BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045788
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 28.5 bits (62), Expect = 0.90, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 58 SDTYEFDEVFTEFVSQKRVYEVVAKPVVE 86
S Y FD VF SQ++VY AK +V+
Sbjct: 43 SKPYAFDRVFQSSTSQEQVYNDCAKKIVK 71
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 28.5 bits (62), Expect = 0.90, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 58 SDTYEFDEVFTEFVSQKRVYEVVAKPVVE 86
S Y FD VF SQ++VY AK +V+
Sbjct: 43 SKPYAFDRVFQSSTSQEQVYNDCAKKIVK 71
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human
Kinetochore Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human
Kinetochore Protein Cenp-E
Length = 349
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 58 SDTYEFDEVFTEFVSQKRVYEVVAKPVVE 86
S ++ FD VF + K VYE +A P+++
Sbjct: 43 SKSFNFDRVFHGNETTKNVYEEIAAPIID 71
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 58 SDTYEFDEVFTEFVSQKRVYEVVAKPVVE 86
S Y FD VF SQ++VY AK +V+
Sbjct: 43 SKPYAFDRVFQSSTSQEQVYNDCAKKIVK 71
>pdb|3N75|A Chain A, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|B Chain B, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|C Chain C, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|D Chain D, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|E Chain E, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3Q16|A Chain A, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|B Chain B, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|C Chain C, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|D Chain D, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|E Chain E, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
Length = 715
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 26 NAEETVVDADFADCVELQIELKRLKLRKNNWNSDTYEFDEVFT 68
NA + +++ ++ + E+KRL+ + W D ++ D + T
Sbjct: 419 NAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDT 461
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 24 PRNAEETVVDADFADCVELQIELKRLKLR-KNNWNSDTYEFDEVFTEFVSQKRVYEVVAK 82
P +EE + + E +EL+ + + K+ + FD+VF SQ ++E+V+
Sbjct: 70 PLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVS- 128
Query: 83 PVVE 86
P+++
Sbjct: 129 PLIQ 132
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 24 PRNAEETVVDADFADCVELQIELKRLKLR-KNNWNSDTYEFDEVFTEFVSQKRVYEVVAK 82
P +EE + + E +EL+ + + K+ + FD+VF SQ ++E+V+
Sbjct: 67 PLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVS- 125
Query: 83 PVVE 86
P+++
Sbjct: 126 PLIQ 129
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 61 YEFDEVFTEFVSQKRVYEVVAKPVV 85
Y FD+VF SQ++VY AK +V
Sbjct: 53 YLFDKVFKPNASQEKVYNEAAKSIV 77
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 24 PRNAEETVVDADFADCVELQIELKRLKLR-KNNWNSDTYEFDEVFTEFVSQKRVYEVVAK 82
P +EE + + E +EL+ + + K+ + FD+VF SQ ++E+V+
Sbjct: 67 PLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVS- 125
Query: 83 PVVE 86
P+++
Sbjct: 126 PLIQ 129
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 24 PRNAEETVVDADFADCVELQIELKRLKLR-KNNWNSDTYEFDEVFTEFVSQKRVYEVVAK 82
P +EE + + E +EL+ + + K+ + FD+VF SQ ++E+V+
Sbjct: 78 PLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVS- 136
Query: 83 PVVE 86
P+++
Sbjct: 137 PLIQ 140
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 24 PRNAEETVVDADFADCVELQIELKRLKLR-KNNWNSDTYEFDEVFTEFVSQKRVYEVVAK 82
P +EE + + E +EL+ + + K+ + FD+VF SQ ++E+V+
Sbjct: 64 PLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVS- 122
Query: 83 PVVE 86
P+++
Sbjct: 123 PLIQ 126
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 58 SDTYEFDEVFTEFVSQKRVYEVVAKPVVE 86
+ T+ FD F + + VY A+P+VE
Sbjct: 138 NQTFRFDYAFDDSAPNEMVYRFTARPLVE 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,626,802
Number of Sequences: 62578
Number of extensions: 79477
Number of successful extensions: 206
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 12
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)