Query 045788
Match_columns 111
No_of_seqs 219 out of 1050
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:31:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01370 KISc_KIP3_like Kinesin 99.7 3.1E-17 6.8E-22 125.5 8.7 78 15-94 1-89 (338)
2 KOG0243 Kinesin-like protein [ 99.7 2.4E-17 5.3E-22 138.5 8.0 83 12-94 47-130 (1041)
3 cd01368 KISc_KIF23_like Kinesi 99.7 1.2E-16 2.5E-21 122.8 9.7 80 14-94 1-90 (345)
4 cd01365 KISc_KIF1A_KIF1B Kines 99.7 1.3E-16 2.9E-21 122.7 9.4 79 14-94 1-90 (356)
5 cd01367 KISc_KIF2_like Kinesin 99.7 1.5E-16 3.2E-21 121.1 9.2 81 14-94 1-86 (322)
6 KOG0240 Kinesin (SMY1 subfamil 99.7 7.4E-17 1.6E-21 128.7 7.3 80 12-94 5-84 (607)
7 cd01371 KISc_KIF3 Kinesin moto 99.7 1.8E-16 3.8E-21 121.1 9.0 81 14-94 1-83 (333)
8 cd01373 KISc_KLP2_like Kinesin 99.7 1.7E-16 3.6E-21 121.5 8.8 76 14-94 1-76 (337)
9 cd01376 KISc_KID_like Kinesin 99.7 4.3E-16 9.3E-21 118.3 9.6 79 15-94 1-82 (319)
10 cd01364 KISc_BimC_Eg5 Kinesin 99.7 3E-16 6.4E-21 120.5 8.4 81 14-94 2-83 (352)
11 cd01369 KISc_KHC_KIF5 Kinesin 99.7 6E-16 1.3E-20 117.6 9.1 76 14-94 2-78 (325)
12 KOG4280 Kinesin-like protein [ 99.6 5.7E-16 1.2E-20 124.9 7.2 84 11-94 2-87 (574)
13 cd01374 KISc_CENP_E Kinesin mo 99.6 1.7E-15 3.8E-20 115.0 8.9 75 15-94 1-75 (321)
14 cd01372 KISc_KIF4 Kinesin moto 99.6 1.5E-15 3.1E-20 116.1 8.3 73 15-94 2-75 (341)
15 KOG0245 Kinesin-like protein [ 99.6 1.8E-15 3.9E-20 126.9 7.3 81 12-94 2-89 (1221)
16 smart00129 KISc Kinesin motor, 99.6 1.4E-14 3E-19 110.3 9.1 80 15-94 1-81 (335)
17 cd01366 KISc_C_terminal Kinesi 99.6 2.5E-14 5.4E-19 108.8 9.4 79 13-94 1-79 (329)
18 PLN03188 kinesin-12 family pro 99.5 2.7E-14 5.8E-19 122.0 9.0 71 13-94 97-167 (1320)
19 KOG0242 Kinesin-like protein [ 99.5 2.5E-14 5.4E-19 117.9 8.2 81 13-94 5-88 (675)
20 KOG0239 Kinesin (KAR3 subfamil 99.5 2E-14 4.4E-19 118.3 7.5 83 11-94 311-394 (670)
21 cd00106 KISc Kinesin motor dom 99.5 6.1E-14 1.3E-18 106.4 9.6 77 15-94 1-80 (328)
22 cd01375 KISc_KIF9_like Kinesin 99.5 2.8E-14 6.1E-19 109.1 6.9 75 15-94 1-82 (334)
23 KOG0241 Kinesin-like protein [ 99.5 7.7E-14 1.7E-18 116.9 6.7 80 13-94 3-95 (1714)
24 PF00225 Kinesin: Kinesin moto 99.4 4.4E-13 9.6E-18 101.9 4.7 74 21-94 1-76 (335)
25 KOG0246 Kinesin-like protein [ 99.3 6.3E-12 1.4E-16 101.0 6.8 79 14-92 208-291 (676)
26 KOG0247 Kinesin-like protein [ 98.9 4.8E-09 1E-13 86.5 6.8 79 13-93 30-115 (809)
27 KOG0244 Kinesin-like protein [ 98.7 2.1E-08 4.5E-13 84.4 4.0 67 22-95 1-68 (913)
28 COG5059 KIP1 Kinesin-like prot 98.6 1.6E-07 3.5E-12 76.7 6.8 37 58-94 55-91 (568)
29 cd01363 Motor_domain Myosin an 96.9 0.00085 1.9E-08 47.3 2.8 18 76-94 8-25 (186)
30 PF12444 Sox_N: Sox developmen 59.0 5.7 0.00012 24.9 1.2 23 72-94 53-75 (84)
31 COG3956 Protein containing tet 46.3 11 0.00023 30.0 1.1 31 59-89 50-81 (488)
32 COG3245 CycB Cytochrome c5 [En 36.2 20 0.00043 24.0 1.1 13 83-95 88-100 (126)
33 COG5059 KIP1 Kinesin-like prot 34.4 9.5 0.00021 31.7 -0.8 79 10-91 301-384 (568)
34 TIGR02698 CopY_TcrY copper tra 30.1 84 0.0018 20.8 3.4 27 66-92 62-88 (130)
35 COG4845 Chloramphenicol O-acet 29.8 32 0.0007 25.2 1.4 16 94-109 173-188 (219)
36 PF03965 Penicillinase_R: Peni 27.5 77 0.0017 20.2 2.8 28 65-92 60-87 (115)
37 PRK15376 pathogenicity island 26.9 28 0.0006 28.9 0.6 20 83-102 626-645 (670)
38 TIGR01501 MthylAspMutase methy 21.5 1.2E+02 0.0025 20.5 2.8 24 59-82 107-130 (134)
39 COG1348 NifH Nitrogenase subun 20.9 72 0.0016 24.2 1.8 21 67-87 229-249 (278)
No 1
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=99.71 E-value=3.1e-17 Score=125.52 Aligned_cols=78 Identities=27% Similarity=0.342 Sum_probs=59.4
Q ss_pred CeEEEEEeCCCCCcccccCCcceeeEeccC-ceEEeecCC----------CCcCceEEEEeEEECCCCChHHHHHHhhHH
Q 045788 15 RVRVAVRLWPRNAEETVVDADFADCVELQI-ELKRLKLRK----------NNWNSDTYEFDEVFTEFVSQKRVYEVVAKP 83 (111)
Q Consensus 15 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~p 83 (111)
+|+|+||+||++++|...+... ++...+ ...+..+.. .....+.|.||+||+++++|++||+.+++|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~--~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~p 78 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRR--VVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKP 78 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCce--EEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHH
Confidence 6999999999999997766552 222222 222232221 123468999999999999999999999999
Q ss_pred HHHHhhccccc
Q 045788 84 VVEQQQQQQQW 94 (111)
Q Consensus 84 lV~~~l~GyN~ 94 (111)
+|+++++|||+
T Consensus 79 lv~~~~~G~n~ 89 (338)
T cd01370 79 LVDGVLNGYNA 89 (338)
T ss_pred HHHHHHCCCCc
Confidence 99999999996
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.71 E-value=2.4e-17 Score=138.53 Aligned_cols=83 Identities=20% Similarity=0.343 Sum_probs=64.4
Q ss_pred CCCCeEEEEEeCCCCCcccccCCc-ceeeEeccCceEEeecCCCCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHhhc
Q 045788 12 VPERVRVAVRLWPRNAEETVVDAD-FADCVELQIELKRLKLRKNNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQQ 90 (111)
Q Consensus 12 ~~~~I~V~vRvRP~~~~E~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l~ 90 (111)
...||+|+|||||++.+|...... .+.|........+........-.++|+||+||+|.+.|++||+.++.|+|..|+.
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~ 126 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLE 126 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhc
Confidence 346999999999999999887766 3344443333333332122224789999999999999999999999999999999
Q ss_pred cccc
Q 045788 91 QQQW 94 (111)
Q Consensus 91 GyN~ 94 (111)
||||
T Consensus 127 GyNC 130 (1041)
T KOG0243|consen 127 GYNC 130 (1041)
T ss_pred cCCc
Confidence 9997
No 3
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=99.69 E-value=1.2e-16 Score=122.76 Aligned_cols=80 Identities=18% Similarity=0.304 Sum_probs=59.6
Q ss_pred CCeEEEEEeCCCCCcccccCCc-ceeeEeccCceEEeecCC---------CCcCceEEEEeEEECCCCChHHHHHHhhHH
Q 045788 14 ERVRVAVRLWPRNAEETVVDAD-FADCVELQIELKRLKLRK---------NNWNSDTYEFDEVFTEFVSQKRVYEVVAKP 83 (111)
Q Consensus 14 ~~I~V~vRvRP~~~~E~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~p 83 (111)
.+|+|+||+||++..|...+.. ++.++ ......+..+.. .....+.|.||+||+++++|++||+.+++|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p 79 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVI-NSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALP 79 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEc-CCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHH
Confidence 3799999999999999765544 33322 222222222111 123578999999999999999999999999
Q ss_pred HHHHhhccccc
Q 045788 84 VVEQQQQQQQW 94 (111)
Q Consensus 84 lV~~~l~GyN~ 94 (111)
+|+++++|||+
T Consensus 80 ~v~~~l~G~n~ 90 (345)
T cd01368 80 LVQDLLKGKNS 90 (345)
T ss_pred HHHHHhCCCce
Confidence 99999999995
No 4
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=99.69 E-value=1.3e-16 Score=122.67 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=61.1
Q ss_pred CCeEEEEEeCCCCCcccccCCcceeeEeccCceEEeecCCC----CcCceEEEEeEEECCC-------CChHHHHHHhhH
Q 045788 14 ERVRVAVRLWPRNAEETVVDADFADCVELQIELKRLKLRKN----NWNSDTYEFDEVFTEF-------VSQKRVYEVVAK 82 (111)
Q Consensus 14 ~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~F~FD~VF~~~-------asQ~~Vy~~~a~ 82 (111)
++|+|+||+||++..|...+... ++...+....+..... ....+.|.||+||+++ ++|++||+.++.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~--~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~ 78 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKC--IVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR 78 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCce--EEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence 58999999999999998777653 2333333332322221 2347899999999998 999999999999
Q ss_pred HHHHHhhccccc
Q 045788 83 PVVEQQQQQQQW 94 (111)
Q Consensus 83 plV~~~l~GyN~ 94 (111)
|+|+++++|||+
T Consensus 79 p~v~~~l~G~n~ 90 (356)
T cd01365 79 ELLDHAFEGYNV 90 (356)
T ss_pred HHHHHHhCCCce
Confidence 999999999995
No 5
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=99.69 E-value=1.5e-16 Score=121.06 Aligned_cols=81 Identities=23% Similarity=0.282 Sum_probs=60.0
Q ss_pred CCeEEEEEeCCCCCcccccCCcceeeEeccCceEEeecCC-----CCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHh
Q 045788 14 ERVRVAVRLWPRNAEETVVDADFADCVELQIELKRLKLRK-----NNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQ 88 (111)
Q Consensus 14 ~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~ 88 (111)
.+|+|+|||||+++.|...+...+..+.......+..+.. ...+.+.|.||+||+++++|++||+.+++|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 3799999999999999865554333333332233222111 11235899999999999999999999999999999
Q ss_pred hccccc
Q 045788 89 QQQQQW 94 (111)
Q Consensus 89 l~GyN~ 94 (111)
++|||+
T Consensus 81 ~~G~n~ 86 (322)
T cd01367 81 FEGGVA 86 (322)
T ss_pred hCCCce
Confidence 999995
No 6
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=99.68 E-value=7.4e-17 Score=128.71 Aligned_cols=80 Identities=29% Similarity=0.417 Sum_probs=65.0
Q ss_pred CCCCeEEEEEeCCCCCcccccCCcceeeEeccCceEEeecCCCCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHhhcc
Q 045788 12 VPERVRVAVRLWPRNAEETVVDADFADCVELQIELKRLKLRKNNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQQQ 91 (111)
Q Consensus 12 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l~G 91 (111)
++++|+|+||+||++..|...+...+.+..... .++....++ ..++|.||+||.|+++|++||+.+|+|+|+++|.|
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~-~~v~~~~~~--~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~G 81 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGE-NTVVLETTK--ETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLG 81 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCc-ceEEEeccc--ccccceeeeecCCCccHHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999988877655555432 222322222 23899999999999999999999999999999999
Q ss_pred ccc
Q 045788 92 QQW 94 (111)
Q Consensus 92 yN~ 94 (111)
||+
T Consensus 82 YNG 84 (607)
T KOG0240|consen 82 YNG 84 (607)
T ss_pred cce
Confidence 994
No 7
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=99.68 E-value=1.8e-16 Score=121.08 Aligned_cols=81 Identities=25% Similarity=0.270 Sum_probs=60.9
Q ss_pred CCeEEEEEeCCCCCcccccCCcceeeEeccCceEEeecCC--CCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHhhcc
Q 045788 14 ERVRVAVRLWPRNAEETVVDADFADCVELQIELKRLKLRK--NNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQQQ 91 (111)
Q Consensus 14 ~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l~G 91 (111)
++|+|+||+||++..|...+......+............. .....+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 5899999999999999876655322222222222222222 12357899999999999999999999999999999999
Q ss_pred ccc
Q 045788 92 QQW 94 (111)
Q Consensus 92 yN~ 94 (111)
||+
T Consensus 81 ~n~ 83 (333)
T cd01371 81 YNG 83 (333)
T ss_pred Cce
Confidence 995
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=99.68 E-value=1.7e-16 Score=121.50 Aligned_cols=76 Identities=24% Similarity=0.294 Sum_probs=57.4
Q ss_pred CCeEEEEEeCCCCCcccccCCcceeeEeccCceEEeecCCCCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHhhcccc
Q 045788 14 ERVRVAVRLWPRNAEETVVDADFADCVELQIELKRLKLRKNNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQQQQQ 93 (111)
Q Consensus 14 ~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l~GyN 93 (111)
.+|+|+||+||++..|...+.. .++.......+..... +.+.|.||+||+++++|++||+.+++|+|+++++|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~--~~v~~~~~~~~~~~~~---~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n 75 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQG--QCLKKLSSDTLVWHSH---PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYN 75 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCC--eEEEEcCCCcEEeeCC---CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 4799999999999998754433 2332222222221111 2578999999999999999999999999999999999
Q ss_pred c
Q 045788 94 W 94 (111)
Q Consensus 94 ~ 94 (111)
+
T Consensus 76 ~ 76 (337)
T cd01373 76 G 76 (337)
T ss_pred e
Confidence 5
No 9
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=99.67 E-value=4.3e-16 Score=118.34 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=58.2
Q ss_pred CeEEEEEeCCCCCcccccCCcceeeEeccC---ceEEeecCCCCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHhhcc
Q 045788 15 RVRVAVRLWPRNAEETVVDADFADCVELQI---ELKRLKLRKNNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQQQ 91 (111)
Q Consensus 15 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l~G 91 (111)
+|+|+||+||+.++|.. +..++.....++ .........+....+.|.||+||+++++|++||+.+++|+|+++++|
T Consensus 1 ~i~V~vRvRP~~~~e~~-~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G 79 (319)
T cd01376 1 NVRVVVRVRPFLDCEED-SSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSG 79 (319)
T ss_pred CcEEEEEeCcCCccccC-CCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCC
Confidence 69999999999999843 222333332221 12222222333457899999999999999999999999999999999
Q ss_pred ccc
Q 045788 92 QQW 94 (111)
Q Consensus 92 yN~ 94 (111)
||+
T Consensus 80 ~n~ 82 (319)
T cd01376 80 QNA 82 (319)
T ss_pred Cce
Confidence 995
No 10
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=99.66 E-value=3e-16 Score=120.48 Aligned_cols=81 Identities=25% Similarity=0.311 Sum_probs=59.6
Q ss_pred CCeEEEEEeCCCCCcccccCCcceeeEecc-CceEEeecCCCCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHhhccc
Q 045788 14 ERVRVAVRLWPRNAEETVVDADFADCVELQ-IELKRLKLRKNNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQQQQ 92 (111)
Q Consensus 14 ~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l~Gy 92 (111)
.||+|+||+||+...|...+...+..+... ....+..........+.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 589999999999999976554422112222 2222222211223568999999999999999999999999999999999
Q ss_pred cc
Q 045788 93 QW 94 (111)
Q Consensus 93 N~ 94 (111)
|+
T Consensus 82 n~ 83 (352)
T cd01364 82 NC 83 (352)
T ss_pred eE
Confidence 94
No 11
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=99.65 E-value=6e-16 Score=117.62 Aligned_cols=76 Identities=26% Similarity=0.356 Sum_probs=59.0
Q ss_pred CCeEEEEEeCCCCCcccccCCcceeeEeccCceEE-eecCCCCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHhhccc
Q 045788 14 ERVRVAVRLWPRNAEETVVDADFADCVELQIELKR-LKLRKNNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQQQQ 92 (111)
Q Consensus 14 ~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l~Gy 92 (111)
++|+|+||+||++..|...+... ++...+...+ +... ...+.|.||+||+++++|++||+.+++|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~--~v~~~~~~~v~~~~~---~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~ 76 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKS--IVKFPGEDTVSIAGS---DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGY 76 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCce--EEEEcCCCEEEecCC---CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 68999999999999986555442 2333333222 2221 2468999999999999999999999999999999999
Q ss_pred cc
Q 045788 93 QW 94 (111)
Q Consensus 93 N~ 94 (111)
|+
T Consensus 77 n~ 78 (325)
T cd01369 77 NG 78 (325)
T ss_pred cc
Confidence 96
No 12
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.63 E-value=5.7e-16 Score=124.86 Aligned_cols=84 Identities=20% Similarity=0.198 Sum_probs=61.9
Q ss_pred CCCCCeEEEEEeCCCCCcccccCCc-ceeeEeccCceEEeecCC-CCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHh
Q 045788 11 VVPERVRVAVRLWPRNAEETVVDAD-FADCVELQIELKRLKLRK-NNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQ 88 (111)
Q Consensus 11 ~~~~~I~V~vRvRP~~~~E~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~ 88 (111)
....+++|++|+||++..+...... +..+........+..+.. .....++|+||+||+++++|++||+.+++|+|+++
T Consensus 2 ~~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~sv 81 (574)
T KOG4280|consen 2 SPACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESV 81 (574)
T ss_pred CcccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHH
Confidence 4567999999999999988765544 222222222222222221 22346889999999999999999999999999999
Q ss_pred hccccc
Q 045788 89 QQQQQW 94 (111)
Q Consensus 89 l~GyN~ 94 (111)
|+|||+
T Consensus 82 l~GyNg 87 (574)
T KOG4280|consen 82 LEGYNG 87 (574)
T ss_pred hcccCc
Confidence 999995
No 13
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=99.62 E-value=1.7e-15 Score=114.97 Aligned_cols=75 Identities=25% Similarity=0.371 Sum_probs=56.9
Q ss_pred CeEEEEEeCCCCCcccccCCcceeeEeccCceEEeecCCCCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHhhccccc
Q 045788 15 RVRVAVRLWPRNAEETVVDADFADCVELQIELKRLKLRKNNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQQQQQW 94 (111)
Q Consensus 15 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l~GyN~ 94 (111)
+|+|+||+||++..|.. +..+. +.......+..... ...+.|.||+||+++++|++||+.+++|+|+++++|||+
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~--~~~~~~~~v~~~~~--~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~ 75 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVA--WSIDNDNTISLEES--TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNG 75 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcce--EEECCCCEEEEcCC--CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCce
Confidence 69999999999999884 22332 22222222222111 246899999999999999999999999999999999995
No 14
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=99.62 E-value=1.5e-15 Score=116.10 Aligned_cols=73 Identities=26% Similarity=0.335 Sum_probs=57.4
Q ss_pred CeEEEEEeCCCCCcccccCCc-ceeeEeccCceEEeecCCCCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHhhcccc
Q 045788 15 RVRVAVRLWPRNAEETVVDAD-FADCVELQIELKRLKLRKNNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQQQQQ 93 (111)
Q Consensus 15 ~I~V~vRvRP~~~~E~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l~GyN 93 (111)
+|+|+||+||++..|...+.. ++.+....+ ..... ..+.|.||+||+++++|++||+.+++|+|+++++|||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~-~v~~~------~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n 74 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEP-QVTVG------TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYN 74 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCC-EEEec------CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 699999999999999866655 322222222 22221 1578999999999999999999999999999999999
Q ss_pred c
Q 045788 94 W 94 (111)
Q Consensus 94 ~ 94 (111)
+
T Consensus 75 ~ 75 (341)
T cd01372 75 A 75 (341)
T ss_pred c
Confidence 6
No 15
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.60 E-value=1.8e-15 Score=126.88 Aligned_cols=81 Identities=25% Similarity=0.338 Sum_probs=63.5
Q ss_pred CCCCeEEEEEeCCCCCcccccCCcceeeEeccCceEEeecCCCCcCceEEEEeEEE-------CCCCChHHHHHHhhHHH
Q 045788 12 VPERVRVAVRLWPRNAEETVVDADFADCVELQIELKRLKLRKNNWNSDTYEFDEVF-------TEFVSQKRVYEVVAKPV 84 (111)
Q Consensus 12 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF-------~~~asQ~~Vy~~~a~pl 84 (111)
+..+|+|+||+||+|.+|.....+|+.-+..+. ++++.+... .....|+||++| +.+|+|.+||+++|+++
T Consensus 2 ~~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~-ttii~~~~~-k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~m 79 (1221)
T KOG0245|consen 2 EGSSVKVAVRVRPFNAREKSRDAKCVVQMQGNT-TTIINPKGS-KDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREM 79 (1221)
T ss_pred CCCceEEEEEeccchhhhhhcccceEEEecCCc-eeeecCCCc-ccCCceecceeeecCCCCCCchhhHHHHHHHHhHHH
Confidence 457899999999999999988777765455444 333433322 235669999999 45699999999999999
Q ss_pred HHHhhccccc
Q 045788 85 VEQQQQQQQW 94 (111)
Q Consensus 85 V~~~l~GyN~ 94 (111)
++++++|||+
T Consensus 80 L~~AfEGYN~ 89 (1221)
T KOG0245|consen 80 LDHAFEGYNV 89 (1221)
T ss_pred HHHHhcccce
Confidence 9999999995
No 16
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=99.57 E-value=1.4e-14 Score=110.35 Aligned_cols=80 Identities=25% Similarity=0.300 Sum_probs=61.0
Q ss_pred CeEEEEEeCCCCCcccccCCcceeeEeccCc-eEEeecCCCCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHhhcccc
Q 045788 15 RVRVAVRLWPRNAEETVVDADFADCVELQIE-LKRLKLRKNNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQQQQQ 93 (111)
Q Consensus 15 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l~GyN 93 (111)
+|+|+||+||++..|...+......+..... .............+.|.||+||+++++|++||+.++.|+|+.+++|||
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 6899999999999988766553322322222 222333333345789999999999999999999999999999999999
Q ss_pred c
Q 045788 94 W 94 (111)
Q Consensus 94 ~ 94 (111)
+
T Consensus 81 ~ 81 (335)
T smart00129 81 A 81 (335)
T ss_pred e
Confidence 5
No 17
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=99.55 E-value=2.5e-14 Score=108.82 Aligned_cols=79 Identities=22% Similarity=0.197 Sum_probs=57.3
Q ss_pred CCCeEEEEEeCCCCCcccccCCcceeeEeccCceEEeecCCCCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHhhccc
Q 045788 13 PERVRVAVRLWPRNAEETVVDADFADCVELQIELKRLKLRKNNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQQQQ 92 (111)
Q Consensus 13 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l~Gy 92 (111)
.++|+|+||+||+...|..... ....+...+...+.- .....+.+.|.||+||+++++|++||+.+ +|+|+++++||
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~-~~~~~~~~~~~~i~~-~~~~~~~~~f~fD~vf~~~~~q~~v~~~v-~p~v~~~~~G~ 77 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYS-SVISFPDEDGGTIEL-SKGTGKKKSFSFDRVFDPDASQEDVFEEV-SPLVQSALDGY 77 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCc-cEEEEcCCCceEEEE-eCCCCCceEEecCEEECCCCCHHHHHHHH-HHHHHHHhCCC
Confidence 4789999999999998863222 222333332133222 12223578999999999999999999985 89999999999
Q ss_pred cc
Q 045788 93 QW 94 (111)
Q Consensus 93 N~ 94 (111)
|+
T Consensus 78 ~~ 79 (329)
T cd01366 78 NV 79 (329)
T ss_pred ce
Confidence 94
No 18
>PLN03188 kinesin-12 family protein; Provisional
Probab=99.54 E-value=2.7e-14 Score=121.99 Aligned_cols=71 Identities=23% Similarity=0.340 Sum_probs=54.7
Q ss_pred CCCeEEEEEeCCCCCcccccCCcceeeEeccCceEEeecCCCCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHhhccc
Q 045788 13 PERVRVAVRLWPRNAEETVVDADFADCVELQIELKRLKLRKNNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQQQQ 92 (111)
Q Consensus 13 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l~Gy 92 (111)
.++|+|+||+||++..|. +..++ ....+....+ ..+.|.||+||+++++|++||+.+++|+|+++++||
T Consensus 97 ds~VkV~VRVRPl~~~E~--g~~iV--~~~s~dsl~I-------~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGy 165 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE--GEMIV--QKMSNDSLTI-------NGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165 (1320)
T ss_pred CCCeEEEEEcCCCCCccC--CCeeE--EEcCCCeEEE-------eCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 369999999999998863 22222 2222222222 146899999999999999999999999999999999
Q ss_pred cc
Q 045788 93 QW 94 (111)
Q Consensus 93 N~ 94 (111)
|+
T Consensus 166 Na 167 (1320)
T PLN03188 166 NS 167 (1320)
T ss_pred cc
Confidence 94
No 19
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.53 E-value=2.5e-14 Score=117.90 Aligned_cols=81 Identities=26% Similarity=0.309 Sum_probs=58.7
Q ss_pred CCCeEEEEEeCCCCCcccccCCcceeeEeccCceEEeecC-C--CCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHhh
Q 045788 13 PERVRVAVRLWPRNAEETVVDADFADCVELQIELKRLKLR-K--NNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQ 89 (111)
Q Consensus 13 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l 89 (111)
.++|.|+||+||++++|...+..+......+... ..... . .......|.||+||+++++|++||+.+++|+|.++|
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l 83 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTL-FKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVL 83 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCcee-EeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHh
Confidence 4689999999999999655554443322222221 11111 1 111147899999999999999999999999999999
Q ss_pred ccccc
Q 045788 90 QQQQW 94 (111)
Q Consensus 90 ~GyN~ 94 (111)
+||||
T Consensus 84 ~G~N~ 88 (675)
T KOG0242|consen 84 EGFNA 88 (675)
T ss_pred cCccc
Confidence 99995
No 20
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=99.53 E-value=2e-14 Score=118.27 Aligned_cols=83 Identities=24% Similarity=0.269 Sum_probs=57.3
Q ss_pred CCCCCeEEEEEeCCCCCcccccCCcceeeEeccCceEEeecCC-CCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHhh
Q 045788 11 VVPERVRVAVRLWPRNAEETVVDADFADCVELQIELKRLKLRK-NNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQ 89 (111)
Q Consensus 11 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l 89 (111)
.-.+||||+||+||+.+.|.......+..........+..+.. .....+.|.||+||+|.++|++||+++ .|+|+++|
T Consensus 311 eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~-~~lv~S~l 389 (670)
T KOG0239|consen 311 ELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEV-SPLVQSAL 389 (670)
T ss_pred HhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHH-HHHHHHHh
Confidence 3468999999999999999875322111111111122222221 111234699999999999999999998 69999999
Q ss_pred ccccc
Q 045788 90 QQQQW 94 (111)
Q Consensus 90 ~GyN~ 94 (111)
+|||.
T Consensus 390 DGYnV 394 (670)
T KOG0239|consen 390 DGYNV 394 (670)
T ss_pred cCcce
Confidence 99994
No 21
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=99.53 E-value=6.1e-14 Score=106.35 Aligned_cols=77 Identities=27% Similarity=0.462 Sum_probs=57.0
Q ss_pred CeEEEEEeCCCCCcccccCCcceeeEeccC--ceEEeecCC-CCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHhhcc
Q 045788 15 RVRVAVRLWPRNAEETVVDADFADCVELQI--ELKRLKLRK-NNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQQQ 91 (111)
Q Consensus 15 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l~G 91 (111)
+|+|+||+||+...|...... ++...+ ...+..+.. .....+.|.||+||+++++|++||+.+++|+|+++++|
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G 77 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEES---CITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEG 77 (328)
T ss_pred CeEEEEEcCCCCcccccCCCc---EEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 689999999999887332222 233333 233222221 12346899999999999999999999999999999999
Q ss_pred ccc
Q 045788 92 QQW 94 (111)
Q Consensus 92 yN~ 94 (111)
||+
T Consensus 78 ~~~ 80 (328)
T cd00106 78 YNG 80 (328)
T ss_pred Cce
Confidence 995
No 22
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=99.52 E-value=2.8e-14 Score=109.05 Aligned_cols=75 Identities=27% Similarity=0.341 Sum_probs=53.2
Q ss_pred CeEEEEEeCCCCCcccccCCcceeeEeccCceEE-------eecCCCCcCceEEEEeEEECCCCChHHHHHHhhHHHHHH
Q 045788 15 RVRVAVRLWPRNAEETVVDADFADCVELQIELKR-------LKLRKNNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQ 87 (111)
Q Consensus 15 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~ 87 (111)
.|+|+||+||+...+... +.+.......++ .....+..+.+.|.||+||++ ++|++||+.+++|+|++
T Consensus 1 ~i~V~vRvRP~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~ 75 (334)
T cd01375 1 TIQVFVRVRPTPTKQGSS----IKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDS 75 (334)
T ss_pred CeEEEEECCCCCCCCCcc----EEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHH
Confidence 489999999999854321 111111111111 111223335688999999999 99999999999999999
Q ss_pred hhccccc
Q 045788 88 QQQQQQW 94 (111)
Q Consensus 88 ~l~GyN~ 94 (111)
+++|||+
T Consensus 76 ~~~G~n~ 82 (334)
T cd01375 76 ALDGYNG 82 (334)
T ss_pred HhCCCcc
Confidence 9999995
No 23
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.47 E-value=7.7e-14 Score=116.88 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=62.3
Q ss_pred CCCeEEEEEeCCCCCcccccCCcceeeEeccCceEEeecC------CCCcCceEEEEeEEECC-------CCChHHHHHH
Q 045788 13 PERVRVAVRLWPRNAEETVVDADFADCVELQIELKRLKLR------KNNWNSDTYEFDEVFTE-------FVSQKRVYEV 79 (111)
Q Consensus 13 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~F~FD~VF~~-------~asQ~~Vy~~ 79 (111)
..+|||+||+||++.+|++...+|+.-+ +..++++... +.....++|.||++|.+ .++|+.||+.
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~v--d~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~ 80 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEV--DKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKC 80 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEe--ccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHh
Confidence 4799999999999999999888865333 3333333221 12234799999999944 4889999999
Q ss_pred hhHHHHHHhhccccc
Q 045788 80 VAKPVVEQQQQQQQW 94 (111)
Q Consensus 80 ~a~plV~~~l~GyN~ 94 (111)
++.-+|+++|+|||+
T Consensus 81 lG~~il~naf~GyNa 95 (1714)
T KOG0241|consen 81 LGEGILENAFQGYNA 95 (1714)
T ss_pred cchHHHHHHhhccce
Confidence 999999999999995
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=99.38 E-value=4.4e-13 Score=101.90 Aligned_cols=74 Identities=26% Similarity=0.333 Sum_probs=52.2
Q ss_pred EeCCCCCcccccCCcceeeEec-cCceE-EeecCCCCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHhhccccc
Q 045788 21 RLWPRNAEETVVDADFADCVEL-QIELK-RLKLRKNNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQQQQQW 94 (111)
Q Consensus 21 RvRP~~~~E~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l~GyN~ 94 (111)
|+||++..|.+.+......... ..... ...........+.|.||+||+++++|++||+.++.|+|+++++|||+
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~ 76 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNA 76 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCce
Confidence 8999999999887663222221 11111 11112222346899999999999999999999999999999999994
No 25
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.29 E-value=6.3e-12 Score=101.03 Aligned_cols=79 Identities=25% Similarity=0.261 Sum_probs=57.6
Q ss_pred CCeEEEEEeCCCCCcccccCCcceeeEeccCceEEeecCC-----CCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHh
Q 045788 14 ERVRVAVRLWPRNAEETVVDADFADCVELQIELKRLKLRK-----NNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQ 88 (111)
Q Consensus 14 ~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~ 88 (111)
..|.||||.||+|.+|......-+..+...+.+.+..+.. ...+...|.||++||+.++++.||..+|+|||+.+
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~I 287 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTI 287 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHH
Confidence 5799999999999999876655222222222222221111 12345799999999999999999999999999999
Q ss_pred hccc
Q 045788 89 QQQQ 92 (111)
Q Consensus 89 l~Gy 92 (111)
|+|=
T Consensus 288 F~~G 291 (676)
T KOG0246|consen 288 FEGG 291 (676)
T ss_pred HhCC
Confidence 9884
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=98.88 E-value=4.8e-09 Score=86.51 Aligned_cols=79 Identities=16% Similarity=0.244 Sum_probs=55.6
Q ss_pred CCCeEEEEEeCCCCCcccccCCcceeeEeccCceEE-----eec--CCCCcCceEEEEeEEECCCCChHHHHHHhhHHHH
Q 045788 13 PERVRVAVRLWPRNAEETVVDADFADCVELQIELKR-----LKL--RKNNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVV 85 (111)
Q Consensus 13 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV 85 (111)
...+.|+||+||+.+.....+ |+.++........ ... .+.....+.|.|.+||+|+++|.+||+.++.|+|
T Consensus 30 ~d~v~v~~rvrP~~~~~~~~g--~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV 107 (809)
T KOG0247|consen 30 KDPVLVVCRVRPLSDASEDEG--CLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLV 107 (809)
T ss_pred hcchheeEeecCCCCCccccc--eEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHH
Confidence 357899999999986322222 4444333221110 011 1233346899999999999999999999999999
Q ss_pred HHhhcccc
Q 045788 86 EQQQQQQQ 93 (111)
Q Consensus 86 ~~~l~GyN 93 (111)
.+.+.|-|
T Consensus 108 ~dlLkgqn 115 (809)
T KOG0247|consen 108 KDLLKGQN 115 (809)
T ss_pred HHHHcccc
Confidence 99999998
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=98.65 E-value=2.1e-08 Score=84.36 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=53.5
Q ss_pred eCCCCCcccccCCc-ceeeEeccCceEEeecCCCCcCceEEEEeEEECCCCChHHHHHHhhHHHHHHhhcccccc
Q 045788 22 LWPRNAEETVVDAD-FADCVELQIELKRLKLRKNNWNSDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQQQQQWQ 95 (111)
Q Consensus 22 vRP~~~~E~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l~GyN~~ 95 (111)
+||+..+|...+.. |+.+.+..+...+. +..+|+||+||+....|.++|+.+++|+++.+++|||+-
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig-------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynat 68 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG-------KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNAT 68 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec-------CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcce
Confidence 69999999988876 44433333333211 257899999999999999999999999999999999964
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.57 E-value=1.6e-07 Score=76.68 Aligned_cols=37 Identities=32% Similarity=0.520 Sum_probs=35.6
Q ss_pred ceEEEEeEEECCCCChHHHHHHhhHHHHHHhhccccc
Q 045788 58 SDTYEFDEVFTEFVSQKRVYEVVAKPVVEQQQQQQQW 94 (111)
Q Consensus 58 ~~~F~FD~VF~~~asQ~~Vy~~~a~plV~~~l~GyN~ 94 (111)
..+|.||+||++.++|++||+..++|++++++.||||
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~ 91 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNC 91 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccc
Confidence 5779999999999999999999999999999999996
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=96.88 E-value=0.00085 Score=47.28 Aligned_cols=18 Identities=17% Similarity=0.325 Sum_probs=16.9
Q ss_pred HHHHhhHHHHHHhhccccc
Q 045788 76 VYEVVAKPVVEQQQQQQQW 94 (111)
Q Consensus 76 Vy~~~a~plV~~~l~GyN~ 94 (111)
||+.++ |+|+.+++|||+
T Consensus 8 vf~~~~-~~v~~~~~G~n~ 25 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNV 25 (186)
T ss_pred HHHHHH-HHHHHHhCCcce
Confidence 999999 999999999995
No 30
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=58.98 E-value=5.7 Score=24.87 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=19.9
Q ss_pred ChHHHHHHhhHHHHHHhhccccc
Q 045788 72 SQKRVYEVVAKPVVEQQQQQQQW 94 (111)
Q Consensus 72 sQ~~Vy~~~a~plV~~~l~GyN~ 94 (111)
..++-|-.+.+.-|-.+|+||.+
T Consensus 53 ~~d~~fp~~IrdAVsqVLkGYDW 75 (84)
T PF12444_consen 53 DEDDRFPVCIRDAVSQVLKGYDW 75 (84)
T ss_pred cccccccHHHHHHHHHHhccCCc
Confidence 34778889999999999999985
No 31
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=46.25 E-value=11 Score=30.00 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=26.8
Q ss_pred eEE-EEeEEECCCCChHHHHHHhhHHHHHHhh
Q 045788 59 DTY-EFDEVFTEFVSQKRVYEVVAKPVVEQQQ 89 (111)
Q Consensus 59 ~~F-~FD~VF~~~asQ~~Vy~~~a~plV~~~l 89 (111)
..| .||.+|....+=++||+.++..|++.+-
T Consensus 50 ~~f~~fD~iYE~heqFe~VYd~I~~~LveaAk 81 (488)
T COG3956 50 IKFSFFDDIYETHEQFEAVYDFIAADLVEAAK 81 (488)
T ss_pred ceeeehhHHHhhhhhHHHHHHHHHHHHHHhhc
Confidence 446 5799999999999999999999998863
No 32
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=36.19 E-value=20 Score=24.01 Aligned_cols=13 Identities=0% Similarity=-0.031 Sum_probs=11.0
Q ss_pred HHHHHhhcccccc
Q 045788 83 PVVEQQQQQQQWQ 95 (111)
Q Consensus 83 plV~~~l~GyN~~ 95 (111)
-|++++++|||+-
T Consensus 88 tL~~hai~GfnAM 100 (126)
T COG3245 88 TLLDHAINGFNAM 100 (126)
T ss_pred HHHHHHhccccCC
Confidence 4889999999963
No 33
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=34.38 E-value=9.5 Score=31.67 Aligned_cols=79 Identities=13% Similarity=0.029 Sum_probs=46.5
Q ss_pred eCCCCCeEEEEEeCCCCCcccccCCc--ce-eeEeccCceEEeec--CCCCcCceEEEEeEEECCCCChHHHHHHhhHHH
Q 045788 10 LVVPERVRVAVRLWPRNAEETVVDAD--FA-DCVELQIELKRLKL--RKNNWNSDTYEFDEVFTEFVSQKRVYEVVAKPV 84 (111)
Q Consensus 10 ~~~~~~I~V~vRvRP~~~~E~~~~~~--~~-~~~~~~~~~~~~~~--~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~a~pl 84 (111)
+++..+++|+|+|+|.+....+.-.. .. ..-... ..+... .........|.||.++.....+..++... .-+
T Consensus 301 LgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~ 377 (568)
T COG5059 301 LGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIK--NKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQ-SQL 377 (568)
T ss_pred cCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcC--CcccccCcCcchHHHHHHHhhhhhhhhhhhhHHHHHH-Hhh
Confidence 46667999999999988553221111 00 000000 011111 11112346789999999988888888765 577
Q ss_pred HHHhhcc
Q 045788 85 VEQQQQQ 91 (111)
Q Consensus 85 V~~~l~G 91 (111)
++..++|
T Consensus 378 ~~~~~~~ 384 (568)
T COG5059 378 SQSSLSG 384 (568)
T ss_pred hhhhhhh
Confidence 7777777
No 34
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=30.13 E-value=84 Score=20.77 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=23.7
Q ss_pred EECCCCChHHHHHHhhHHHHHHhhccc
Q 045788 66 VFTEFVSQKRVYEVVAKPVVEQQQQQQ 92 (111)
Q Consensus 66 VF~~~asQ~~Vy~~~a~plV~~~l~Gy 92 (111)
+|.|-.+.++.....++.+++.+++|-
T Consensus 62 ~Y~p~vs~ee~~~~~~~~~~~~~f~gs 88 (130)
T TIGR02698 62 IYTALVSEDEAVENAAQELFSRICSRK 88 (130)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHHCCC
Confidence 677889999999999999999888875
No 35
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=29.79 E-value=32 Score=25.20 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=14.4
Q ss_pred cceeeccceeeceeee
Q 045788 94 WQRSWRRGKIKWPISL 109 (111)
Q Consensus 94 ~~~~~~~~~~~~~~~~ 109 (111)
++.+|++||++-|.+.
T Consensus 173 Grf~~~~Gkl~lPlav 188 (219)
T COG4845 173 GRFYEEDGKLTLPLAV 188 (219)
T ss_pred cceeccCCeEEEeEEE
Confidence 7889999999999875
No 36
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=27.52 E-value=77 Score=20.18 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=24.4
Q ss_pred EEECCCCChHHHHHHhhHHHHHHhhccc
Q 045788 65 EVFTEFVSQKRVYEVVAKPVVEQQQQQQ 92 (111)
Q Consensus 65 ~VF~~~asQ~~Vy~~~a~plV~~~l~Gy 92 (111)
++|.+-.++++.....++.+++.+++|-
T Consensus 60 ~~Y~p~is~~e~~~~~~~~~l~~~~~gs 87 (115)
T PF03965_consen 60 YVYSPLISREEYLAQELRQFLDRLFDGS 87 (115)
T ss_dssp EEEEESSSHHHHHHHHHHHHHHHHSTTH
T ss_pred eEEEeCCcHHHHHHHHHHHHHHHHhCCC
Confidence 4677889999999999999999998884
No 37
>PRK15376 pathogenicity island 1 effector protein SipA; Provisional
Probab=26.86 E-value=28 Score=28.89 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=17.8
Q ss_pred HHHHHhhcccccceeeccce
Q 045788 83 PVVEQQQQQQQWQRSWRRGK 102 (111)
Q Consensus 83 plV~~~l~GyN~~~~~~~~~ 102 (111)
++|..+|+|.-+-.|||+|-
T Consensus 626 ~lls~~LDGi~~D~s~R~~P 645 (670)
T PRK15376 626 YVLSNVLDGLIGDGSWRAGP 645 (670)
T ss_pred HHHHHHHhhhhcchhhhcCc
Confidence 57778999999999999986
No 38
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.50 E-value=1.2e+02 Score=20.48 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=18.2
Q ss_pred eEEEEeEEECCCCChHHHHHHhhH
Q 045788 59 DTYEFDEVFTEFVSQKRVYEVVAK 82 (111)
Q Consensus 59 ~~F~FD~VF~~~asQ~~Vy~~~a~ 82 (111)
+...||+||++.+.=+++-+.+-+
T Consensus 107 ~~~Gv~~vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 107 KEMGFDRVFAPGTPPEVVIADLKK 130 (134)
T ss_pred HHcCCCEEECcCCCHHHHHHHHHH
Confidence 456799999999887777666543
No 39
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=20.94 E-value=72 Score=24.18 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.0
Q ss_pred ECCCCChHHHHHHhhHHHHHH
Q 045788 67 FTEFVSQKRVYEVVAKPVVEQ 87 (111)
Q Consensus 67 F~~~asQ~~Vy~~~a~plV~~ 87 (111)
|.|++.|.+.|..+|+.++.+
T Consensus 229 ~~P~s~~a~~yr~LA~~I~~n 249 (278)
T COG1348 229 YAPDSNQAEEYRELAKKILEN 249 (278)
T ss_pred hCcchhHHHHHHHHHHHHHhC
Confidence 359999999999999988764
Done!