BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045789
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 86/131 (65%), Gaps = 11/131 (8%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HAKKRG IYAE++ + DA+HIT PHPEG G M +AL +G+A E V YINAH
Sbjct: 243 HAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHG 302
Query: 75 PSTRLGDLREYQALR-----------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHP 123
ST +GD E A++ ++STKS+IGHLLGA+GA EA+AT++A+ G I P
Sbjct: 303 TSTPVGDRAEVLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPP 362
Query: 124 NLNLENPDKHV 134
+NLE+PD +
Sbjct: 363 TINLEDPDPEL 373
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 83/143 (58%), Gaps = 12/143 (8%)
Query: 16 AKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHAP 75
A RG IY E++ ++TCDAYHITAP P+G G + AL SG+ E V+YINAH
Sbjct: 250 ALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGT 309
Query: 76 STRLGDLREYQALR-----------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPN 124
ST D+ E +A++ ++STKS+ GHLLG SG EAVAT+ AI + P
Sbjct: 310 STPANDVTETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPT 369
Query: 125 LNLENPDKHV-LSRTSGASAAFI 146
+NLENPD L G S A I
Sbjct: 370 INLENPDPECDLDYVPGQSRALI 392
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 78/127 (61%), Gaps = 11/127 (8%)
Query: 16 AKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHAP 75
A+ RG NIYAEI+ T DAYHITAP PEG G M+ A+ +G+ +DV Y+NAH
Sbjct: 270 AQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGT 329
Query: 76 STRLGDLREYQA-----------LRMNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPN 124
ST +GDL E +A L+++STKS+ GHLLGA+G EA+ + +I+ + P
Sbjct: 330 STPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPT 389
Query: 125 LNLENPD 131
++ PD
Sbjct: 390 IHAVTPD 396
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 75/125 (60%), Gaps = 11/125 (8%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA +R IYAE+L L+ DA HITAP PEG G + CM AL +GV E+++YINAHA
Sbjct: 275 HAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHA 334
Query: 75 PSTRLGDLREYQALR-----------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHP 123
ST LGD E +A++ ++STK GHLLGA+GA EA T A + P
Sbjct: 335 TSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPP 394
Query: 124 NLNLE 128
LNL+
Sbjct: 395 TLNLD 399
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 103 bits (256), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 75/125 (60%), Gaps = 11/125 (8%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA +R IYAE+L L+ DA HITAP PEG G + CM AL +GV E+++YINAHA
Sbjct: 269 HAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHA 328
Query: 75 PSTRLGDLREYQALR-----------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHP 123
ST LGD E +A++ ++STK GHLLGA+GA EA T A + P
Sbjct: 329 TSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPP 388
Query: 124 NLNLE 128
LNL+
Sbjct: 389 TLNLD 393
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 13/130 (10%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HAK+RG IYAE+ ++ DA+HIT P +G G V M +AL +SG+ ++Y+NAHA
Sbjct: 262 HAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHA 321
Query: 75 PSTRLGDLREYQALR-------------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWI 121
ST +GD E +A++ +STK GHLLGA+GA EA+ +I AI G
Sbjct: 322 TSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVA 381
Query: 122 HPNLNLENPD 131
LN++NPD
Sbjct: 382 PMTLNVKNPD 391
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 76/127 (59%), Gaps = 10/127 (7%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA RG AEI+ T DAYH+TA +G G + M+ AL VA E V+Y+NAHA
Sbjct: 276 HALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHA 335
Query: 75 PSTRLGDLREYQALR----------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPN 124
ST +GD E +AL+ ++STKS GHLLGA+GA EA +I A++ G +
Sbjct: 336 TSTPVGDAGEIEALKTVFGVGAGPAISSTKSATGHLLGAAGAIEAAFSILALRDGVLPGT 395
Query: 125 LNLENPD 131
LNLE+PD
Sbjct: 396 LNLEHPD 402
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 76/127 (59%), Gaps = 10/127 (7%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA RG AEI+ T DAYH+TA +G G + M+ AL VA E V+Y+NAHA
Sbjct: 276 HALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHA 335
Query: 75 PSTRLGDLREYQALR----------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPN 124
ST +GD E +AL+ ++STKS GHLLGA+GA EA +I A++ G +
Sbjct: 336 TSTPVGDAGEIEALKTVFGVGAGPAISSTKSATGHLLGAAGAIEAAFSILALRDGVLPGT 395
Query: 125 LNLENPD 131
LNLE+PD
Sbjct: 396 LNLEHPD 402
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 73/129 (56%), Gaps = 11/129 (8%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HAK RG IYAEI+ T DAYHITAP P G G + A+ +G+ + V+YINAH
Sbjct: 245 HAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAXKXAIDDAGLTPDKVDYINAHG 304
Query: 75 PSTRLGDLREYQALR-----------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHP 123
ST D E QA++ ++STKS GH LGASG EA+ + I+ I P
Sbjct: 305 TSTPYNDEYETQAIKTVFGEHAKKLAISSTKSXTGHTLGASGGIEAIFALLTIRDNIIAP 364
Query: 124 NLNLENPDK 132
++L+N D+
Sbjct: 365 TIHLKNQDE 373
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 75/115 (65%), Gaps = 8/115 (6%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA+KRG I AE++ TCDAYH+T+PHPEG G + ++ AL ++ ++ E V Y+NAH
Sbjct: 264 HAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHG 323
Query: 75 PSTRLGDLREY--------QALRMNSTKSLIGHLLGASGAAEAVATIKAIQTGWI 121
ST + E +A+ ++STKS GHLLGA+GA EA+ TI+A++ ++
Sbjct: 324 TSTPANEKGESGAIVAVLGKAVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFV 378
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 74/115 (64%), Gaps = 8/115 (6%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA+KRG I AE++ TCDAYH+T+PHPEG G + ++ AL ++ ++ E V Y+NAH
Sbjct: 264 HAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHG 323
Query: 75 PSTRLGDLREYQAL--------RMNSTKSLIGHLLGASGAAEAVATIKAIQTGWI 121
ST + E A+ ++STKS GHLLGA+GA EA+ TI+A++ ++
Sbjct: 324 TSTPANEKGESGAIVAVLGKEVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFV 378
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 11/129 (8%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HAKKRG IYAE++ ++ DAYH+T+P G G M AL +G+ + Y+NAH
Sbjct: 260 HAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHG 319
Query: 75 PSTRLGDLREYQALR-----------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHP 123
ST GD E QA++ ++STKS+ GHLLGA+GA E++ +I A++ + P
Sbjct: 320 TSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPP 379
Query: 124 NLNLENPDK 132
+NL+NPD+
Sbjct: 380 TINLDNPDE 388
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 11/129 (8%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HAKKRG IYAE++ ++ DAYH+T+P G G M AL +G+ + Y+NAH
Sbjct: 260 HAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHG 319
Query: 75 PSTRLGDLREYQALR-----------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHP 123
ST GD E QA++ ++STKS+ GHLLGA+GA E++ +I A++ + P
Sbjct: 320 TSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPP 379
Query: 124 NLNLENPDK 132
+NL+NPD+
Sbjct: 380 TINLDNPDE 388
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 11/129 (8%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HAKKRG IYAE++ ++ DAYH+T+P G G M AL +G+ + Y+NAH
Sbjct: 245 HAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHG 304
Query: 75 PSTRLGDLREYQALR-----------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHP 123
ST GD E QA++ ++STKS+ GHLLGA+GA E++ +I A++ + P
Sbjct: 305 TSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPP 364
Query: 124 NLNLENPDK 132
+NL+NPD+
Sbjct: 365 TINLDNPDE 373
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 11/129 (8%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HAKKRG IYAE++ ++ DAYH+T+P G G M AL +G+ + Y+NAH
Sbjct: 260 HAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHG 319
Query: 75 PSTRLGDLREYQALR-----------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHP 123
ST GD E QA++ ++STKS+ GHLLGA+GA E++ +I A++ + P
Sbjct: 320 TSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPP 379
Query: 124 NLNLENPDK 132
+NL+NPD+
Sbjct: 380 TINLDNPDE 388
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 73/115 (63%), Gaps = 8/115 (6%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA+KRG I AE++ TCDAYH+T+PHPEG G + ++ AL ++ ++ E V Y+NA
Sbjct: 265 HAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAAG 324
Query: 75 PSTRLGDLREYQAL--------RMNSTKSLIGHLLGASGAAEAVATIKAIQTGWI 121
ST + E A+ ++STKS GHLLGA+GA EA+ TI+A++ ++
Sbjct: 325 TSTPANEKGESGAIVAVLGKEVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFV 379
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 78/129 (60%), Gaps = 11/129 (8%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HAKKRG IYAE++ ++ DAYH+T+P G G M AL +G+ + Y+NAH
Sbjct: 260 HAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHG 319
Query: 75 PSTRLGDLREYQALR-----------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHP 123
ST GD E QA++ ++ST S+ GHLLGA+GA E++ +I A++ + P
Sbjct: 320 TSTPAGDKAEAQAVKTIFGEAASRVLVSSTASMTGHLLGAAGAVESIYSILALRDQAVPP 379
Query: 124 NLNLENPDK 132
+NL+NPD+
Sbjct: 380 TINLDNPDE 388
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 9/129 (6%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HAK RG NI A I+ S+T D +H+ AP P G + +A+ +G+A D++++NAHA
Sbjct: 270 HAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGLAPGDIDHVNAHA 329
Query: 75 PSTRLGDLREYQALR---------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPNL 125
T++GDL E +A+ + + KS +GH +GA GA E++ T+ A++ I P L
Sbjct: 330 TGTQVGDLAEGRAINNALGGNRPAVYAPKSALGHSVGAVGAVESILTVLALRDQVIPPTL 389
Query: 126 NLENPDKHV 134
NL N D +
Sbjct: 390 NLVNLDPEI 398
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HAK RG A +L +T DA+H+ AP +GV M ++L +G++ D++++NAH
Sbjct: 253 HAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHG 312
Query: 75 PSTRLGDLREYQALRMN--------STKSLIGHLLGASGAAEAVATIKAIQTGWIHPNLN 126
+T +GD E A+R+ + KS +GH +GA GA E+V T+ ++ G I P LN
Sbjct: 313 TATPIGDAAEANAIRVAGCDQAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLN 372
Query: 127 LENPDKHV 134
E PD +
Sbjct: 373 YETPDPEI 380
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HAK RG A +L +T DA+H+ AP +GV M ++L +G++ D++++NAH
Sbjct: 253 HAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHG 312
Query: 75 PSTRLGDLREYQALRMN--------STKSLIGHLLGASGAAEAVATIKAIQTGWIHPNLN 126
+T +GD E A+R+ + KS +GH +GA GA E+V T+ ++ G I P LN
Sbjct: 313 TATPIGDAAEANAIRVAGCDQAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLN 372
Query: 127 LENPDKHV 134
E PD +
Sbjct: 373 YETPDPEI 380
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 76/127 (59%), Gaps = 12/127 (9%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HAKKRG IYAEI+ L+ DAYHITAP G G M AL ++ V +++YINAH
Sbjct: 257 HAKKRGARIYAEIIGYGLSGDAYHITAPSESGEGAQRSMMAALKRAQVNVSELDYINAHG 316
Query: 75 PSTRLGDLREYQALR-----------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHP 123
ST + D+ E A+ M+STKS IGHLLGA+GAAEA+ + AI+
Sbjct: 317 TST-MADVIELAAVERVLGYYAPQVSMSSTKSSIGHLLGAAGAAEAIFCVLAIRDNIAPA 375
Query: 124 NLNLENP 130
LNLENP
Sbjct: 376 TLNLENP 382
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 76/128 (59%), Gaps = 14/128 (10%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA RG +IYAEI+ T D + AP EG V CM+ A+ GV ++Y+N+H
Sbjct: 245 HALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMKMAM--HGV-DTPIDYLNSHG 299
Query: 75 PSTRLGDLREYQALR---------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPNL 125
ST +GD++E A+R +++TK++ GH LGA+G EA+ ++ ++ G+I P++
Sbjct: 300 TSTPVGDVKELAAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSI 359
Query: 126 NLENPDKH 133
N+E D+
Sbjct: 360 NIEELDEQ 367
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 76/128 (59%), Gaps = 14/128 (10%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA RG +IYAEI+ T D + AP EG V CM+ A+ GV ++Y+N+H
Sbjct: 245 HALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMKMAM--HGV-DTPIDYLNSHG 299
Query: 75 PSTRLGDLREYQALR---------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPNL 125
ST +GD++E A+R +++TK++ GH LGA+G EA+ ++ ++ G+I P++
Sbjct: 300 TSTPVGDVKELAAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSI 359
Query: 126 NLENPDKH 133
N+E D+
Sbjct: 360 NIEELDEQ 367
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 76/128 (59%), Gaps = 14/128 (10%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA RG +IYAEI+ T D + AP EG V CM+ A+ GV ++Y+N+H
Sbjct: 245 HALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMKMAM--HGV-DTPIDYLNSHG 299
Query: 75 PSTRLGDLREYQALR---------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPNL 125
ST +GD++E A+R +++TK++ GH LGA+G EA+ ++ ++ G+I P++
Sbjct: 300 TSTPVGDVKELAAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSI 359
Query: 126 NLENPDKH 133
N+E D+
Sbjct: 360 NIEELDEQ 367
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 76/128 (59%), Gaps = 14/128 (10%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA RG +IYAEI+ T D + AP EG V CM+ A+ GV ++Y+N+H
Sbjct: 245 HALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMKMAM--HGV-DTPIDYLNSHG 299
Query: 75 PSTRLGDLREYQALR---------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPNL 125
ST +GD++E A+R +++TK++ GH LGA+G EA+ ++ ++ G+I P++
Sbjct: 300 TSTPVGDVKELAAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSI 359
Query: 126 NLENPDKH 133
N+E D+
Sbjct: 360 NIEELDEQ 367
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 76/128 (59%), Gaps = 14/128 (10%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA RG +IYAEI+ T D + AP EG V CM+ A+ GV ++Y+N+H
Sbjct: 257 HALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMKMAM--HGV-DTPIDYLNSHG 311
Query: 75 PSTRLGDLREYQALR---------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPNL 125
ST +GD++E A+R +++TK++ GH LGA+G EA+ ++ ++ G+I P++
Sbjct: 312 TSTPVGDVKELAAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSI 371
Query: 126 NLENPDKH 133
N+E D+
Sbjct: 372 NIEELDEQ 379
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 76/128 (59%), Gaps = 14/128 (10%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA RG +IYAEI+ T D + AP EG V CM+ A+ GV ++Y+N+H
Sbjct: 245 HALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMKMAM--HGV-DTPIDYLNSHG 299
Query: 75 PSTRLGDLREYQALR---------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPNL 125
ST +GD++E A+R +++T+++ GH LGA+G EA+ ++ ++ G+I P++
Sbjct: 300 TSTPVGDVKELAAIREVFGDKSPAISATRAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSI 359
Query: 126 NLENPDKH 133
N+E D+
Sbjct: 360 NIEELDEQ 367
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 76/127 (59%), Gaps = 12/127 (9%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA RG IYAE++ ++ DA+HITAP G G CM AL ++G+ ++++YINAH
Sbjct: 261 HALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALKRAGIVPDEIDYINAHG 320
Query: 75 PSTRLGDLREYQALR-----------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHP 123
ST + D E A+ M+STKS IGHLLGA+GAAEAV + AI+
Sbjct: 321 TST-MADTIELGAVERVVGEAAAKISMSSTKSSIGHLLGAAGAAEAVFSTLAIRDNIAPA 379
Query: 124 NLNLENP 130
LNL+NP
Sbjct: 380 TLNLDNP 386
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HAK RG I+AEI+ D H+T P M M+ AL + + + Y+NAH
Sbjct: 249 HAKARGATIHAEIVGFGCNSDGAHMT--QPTASTMARAMQLALEDAKLDANAIAYVNAHG 306
Query: 75 PSTRLGDLREYQA--------LRMNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPNLN 126
ST GD+ E QA + ++S KS +GH LGA GA EA TI+ ++ W P LN
Sbjct: 307 TSTDRGDVAESQATARTFGERMPISSLKSYVGHTLGACGALEAWWTIEMMKRNWYAPTLN 366
Query: 127 LENPD 131
L D
Sbjct: 367 LTEVD 371
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 14/128 (10%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA RG +IYAEI+ T D + AP EG V CM+ A+ GV ++Y+N+H
Sbjct: 257 HALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMKMAM--HGV-DTPIDYLNSHG 311
Query: 75 PSTRLGDLREYQALR---------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPNL 125
ST +GD++E A+R +++T ++ GH LGA+G EA+ ++ ++ G+I P++
Sbjct: 312 TSTPVGDVKELAAIREVFGDKSPAISATAAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSI 371
Query: 126 NLENPDKH 133
N+E D+
Sbjct: 372 NIEELDEQ 379
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 14/128 (10%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA RG +IYAEI+ T D + AP EG V CM+ A+ GV ++Y+N+
Sbjct: 257 HALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMKMAM--HGV-DTPIDYLNSQG 311
Query: 75 PSTRLGDLREYQALR---------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPNL 125
ST +GD++E A+R +++TK++ GH LGA+G EA+ ++ ++ G+I P++
Sbjct: 312 TSTPVGDVKELAAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSI 371
Query: 126 NLENPDKH 133
N+E D+
Sbjct: 372 NIEELDEQ 379
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 14/128 (10%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA RG +IYAEI+ T D + AP EG V CM+ A+ GV ++Y+N+
Sbjct: 257 HALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMKMAM--HGV-DTPIDYLNSEG 311
Query: 75 PSTRLGDLREYQALR---------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPNL 125
ST +GD++E A+R +++TK++ GH LGA+G EA+ ++ ++ G+I P++
Sbjct: 312 TSTPVGDVKELAAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSI 371
Query: 126 NLENPDKH 133
N+E D+
Sbjct: 372 NIEELDEQ 379
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 72/128 (56%), Gaps = 14/128 (10%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA 74
HA RG +IYAEI+ T D AP EG V C + A A GV ++Y N H
Sbjct: 249 HALARGAHIYAEIVGYGATSDGADXVAPSGEGA--VRCXQXAXA--GV-DTPIDYXNVHG 303
Query: 75 PSTRLGDLREYQALR---------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPNL 125
ST +GD++E A+R ++STK+ GH LGA+G EA+ ++ ++ G+I P++
Sbjct: 304 TSTPVGDVKELGAIREVFGNNTPAISSTKAXTGHSLGAAGVHEAIFSLLXVEHGFIAPSI 363
Query: 126 NLENPDKH 133
N++N D+
Sbjct: 364 NIDNLDEQ 371
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 27/149 (18%)
Query: 16 AKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHAP 75
A RG IY EI+ T D Y + AP EG + CM+ AL+ ++YIN HA
Sbjct: 265 ALARGAKIYGEIVGYGATSDGYDMVAPSGEGA--IRCMKMALS---TVTSKIDYINPHAT 319
Query: 76 STRLGDLREYQALR-----------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPN 124
ST GD E +A+R + +TKSL GH LGA+G EA+ ++ +Q +I +
Sbjct: 320 STPAGDAPEIEAIRQIFGAGDVCPPIAATKSLTGHSLGATGVQEAIYSLLMMQNNFICES 379
Query: 125 LNLENPDKHVLSRTSGASAAFISIPVIKQ 153
++E D AF +P++++
Sbjct: 380 AHIEELDP-----------AFADMPIVRK 397
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 23/172 (13%)
Query: 16 AKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHAP 75
A RG I+AEI + C+AYH+T +G M + AL +S D++YINAH
Sbjct: 252 ALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRTDATDIDYINAHGS 311
Query: 76 STRLGDLREYQALR-----------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPN 124
TR D E A + ++S KS++GH LGA G+ E A + A++ G + P
Sbjct: 312 GTRQNDRHETAAYKRALGEHARRTPVSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPT 371
Query: 125 LNLENPDKHVLSRTSGASAAFISIPV-IKQFKTRFVLI--SFNGSFLSSLYM 173
NL RTS +P+ ++ K R VL S G F S++ +
Sbjct: 372 ANL---------RTSDPECDLDYVPLEARERKLRSVLTVGSGFGGFQSAMVL 414
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 27/149 (18%)
Query: 16 AKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHAP 75
A RG IY EI+ T D Y + AP EG + CM+ AL+ ++YIN HA
Sbjct: 248 ALARGAKIYGEIVGYGATSDGYDMVAPSGEGA--IRCMKMALS---TVTSKIDYINPHAT 302
Query: 76 STRLGDLREYQALR-----------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHPN 124
ST GD E +A+R + +TKSL GH LGA+G EA+ ++ +Q +I +
Sbjct: 303 STPAGDAPEIEAIRQIFGAGDVCPPIAATKSLTGHSLGATGVQEAIYSLLMMQNNFICES 362
Query: 125 LNLENPDKHVLSRTSGASAAFISIPVIKQ 153
++E D AF +P++++
Sbjct: 363 AHIEELDP-----------AFADMPIVRK 380
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 50.4 bits (119), Expect = 6e-07, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 16 AKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHAP 75
A++ G + A + ++ D P G + +AL +GV DV+Y+ AH
Sbjct: 277 ARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQRVIRRALENAGVRAGDVDYVEAHGT 336
Query: 76 STRLGDLREYQALR--------------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWI 121
TRLGD E AL + S KS IGH A+G A + A++ G
Sbjct: 337 GTRLGDPIEVHALLSTYGAERDPDDPLWIGSVKSNIGHTQAAAGVAGVXKAVLALRHGEX 396
Query: 122 HPNLNLENPDKHV 134
L+ + P +
Sbjct: 397 PRTLHFDEPSPQI 409
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 50.4 bits (119), Expect = 8e-07, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 14/164 (8%)
Query: 16 AKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHAP 75
A++ G + A + +L D P G + +AL G+ DV+ + AH
Sbjct: 255 ARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESCGLEPGDVDAVEAHGT 314
Query: 76 STRLGDLREYQALR--------------MNSTKSLIGHLLGASGAAEAVATIKAIQTGWI 121
T LGD E AL + S KS IGH A+G + + A++ G +
Sbjct: 315 GTALGDPIEANALLDTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGEL 374
Query: 122 HPNLNLENPDKHVLSRTSGASAAFISIPVIKQFKTRFVLISFNG 165
L++E P HV + G + + P + +TR +S G
Sbjct: 375 PATLHVEEPTPHVDWSSGGVALLAGNQPWRRGERTRRAAVSAFG 418
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 13/137 (9%)
Query: 17 KKRGTNIYAEILDGSLTCDAYHITA-PHPEGVGMVSCMEKALAKSGVAKEDVNYINAHAP 75
K +YA IL+ D + P G + +GVA E YI AH
Sbjct: 238 KSLARRVYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSAGVAPESFEYIEAHGT 297
Query: 76 STRLGDLREY------------QALRMNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHP 123
T++GD +E + L + STKS +GH ASG A + +++ G P
Sbjct: 298 GTKVGDPQELNGITRALCATRQEPLLIGSTKSNMGHPEPASGLAALAKVLLSLEHGLWAP 357
Query: 124 NLNLENPDKHVLSRTSG 140
NL+ +P+ + + G
Sbjct: 358 NLHFHSPNPEIPALLDG 374
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 13/137 (9%)
Query: 17 KKRGTNIYAEILD-GSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHAP 75
K +YA IL+ G+ T + P G + A +G E + YI AH
Sbjct: 236 KSLARRVYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDPESLEYIEAHGT 295
Query: 76 STRLGDLREY------------QALRMNSTKSLIGHLLGASGAAEAVATIKAIQTGWIHP 123
T++GD +E + L + STKS +GH ASG A + + +++ G P
Sbjct: 296 GTKVGDPQELNGIVNALCATRREPLLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAP 355
Query: 124 NLNLENPDKHVLSRTSG 140
NL+ P+ + + G
Sbjct: 356 NLHYHTPNPEIPALQDG 372
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 38.5 bits (88), Expect = 0.002, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 26/148 (17%)
Query: 16 AKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMV--------SCMEKALAKSGVAKEDV 67
A K G + A + D H + P P G+G + S + ++LA+ GV +D+
Sbjct: 2828 ALKMGLPVLAVVGYAQSFADGVHTSIPAP-GLGALGAARGGRESTLARSLAQLGVGADDI 2886
Query: 68 NYINAHAPSTRLGDLREYQ---------------ALRMNSTKSLIGHLLGASGAAEAVAT 112
I+ H ST D E + L + S K+L GH G + + +
Sbjct: 2887 AVISKHDTSTLANDPNETELHERIADSMGRAPGNPLFIVSQKTLTGHAKGGAAVFQMMGL 2946
Query: 113 IKAIQTGWIHPNLNLENPDKHVLSRTSG 140
+ ++ G I PN +L+ D + TSG
Sbjct: 2947 CQILRDGVIPPNRSLDCVDDEL--ATSG 2972
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 42 PHPEGVGMVSCMEKALAKSGVAKEDVNYI--NAHAPSTRLGDLREY------QALRMNST 93
P G+G V KAL ++G++ D+ I N + L LRE+ Q L N
Sbjct: 291 PRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNPNGG 350
Query: 94 KSLIGHLLGASGA 106
+GH LGASGA
Sbjct: 351 AIALGHPLGASGA 363
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 42 PHPEGVGMVSCMEKALAKSGVAKEDVNYINAHA--PSTRLGDLREYQ----ALRMNSTKS 95
P G G + KAL K+G++ D++ I A+ + L E Q L +N
Sbjct: 289 PEVMGTGPIPATRKALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDSSKLNVNGGAI 348
Query: 96 LIGHLLGASGAAEAVATIKAIQTGWIHPNL 125
+GH +GASGA V I +Q + L
Sbjct: 349 ALGHPIGASGARILVTLIYEMQKRKVETGL 378
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 50 VSCMEKALAKSGVAKEDVNYINAHAPSTRLGDLRE-----YQALRMNSTKS--------- 95
++ + ALA G+ +D+ + H ST D E Q + TK
Sbjct: 1500 IAPLRGALATWGLTIDDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGNAVLGIFQK 1559
Query: 96 -LIGHLLGASGAAEAVATIKAIQTGWIHPNLNLENPDK 132
L GH GA+GA ++ + TG + N N +N DK
Sbjct: 1560 YLTGHPKGAAGAWMLNGCLQVLNTGIVPGNRNADNVDK 1597
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 50 VSCMEKALAKSGVAKEDVNYINAHAPSTRLGDLREYQAL--------RMNST-------K 94
++ + ALA G+ +D+ + H ST+ D E + R K
Sbjct: 1320 IAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQK 1379
Query: 95 SLIGHLLGASGAAEAVATIKAIQTGWIHPNLNLENPDK 132
L GH GA+GA ++ + +G I N N +N DK
Sbjct: 1380 FLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDK 1417
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 50 VSCMEKALAKSGVAKEDVNYINAHAPSTRLGDLREYQAL--------RMNST-------K 94
++ + ALA G+ +D+ + H ST+ D E + R K
Sbjct: 1519 IAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQK 1578
Query: 95 SLIGHLLGASGAAEAVATIKAIQTGWIHPNLNLENPDK 132
L GH GA+GA ++ + +G I N N +N DK
Sbjct: 1579 FLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDK 1616
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 50 VSCMEKALAKSGVAKEDVNYINAHAPSTRLGDLREYQAL--------RMNST-------K 94
++ + ALA G+ +D+ + H ST+ D E + R K
Sbjct: 1519 IAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQK 1578
Query: 95 SLIGHLLGASGAAEAVATIKAIQTGWIHPNLNLENPDK 132
L GH GA+GA ++ + +G I N N +N DK
Sbjct: 1579 FLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDK 1616
>pdb|3MFG|B Chain B, Crystal Structure Of Toxic Shock Syndrome Toxin 1 (Tsst-1)
In Complex With The Human T Cell Receptor Beta Chain
Vbeta2.1 (Ep-8)
Length = 118
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 31 SLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNYINAHAPSTRL 79
SLT +T+ HPE G C ALA SG + D Y P TRL
Sbjct: 73 SLTLSTLTVTSAHPEDSGFYIC--SALAGSG-SSTDTQYF---GPGTRL 115
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 28.1 bits (61), Expect = 3.3, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 105 GAAEAVATIKAIQTGWIHPNLNLENPDK 132
G++ T++ ++T HP +LENP+K
Sbjct: 752 GSSRRSDTLQQVRTALQHPKFSLENPNK 779
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 42 PHPEGVGMVSCMEKALAKSGVAKEDVNYI--NAHAPSTRLGDLREYQAL-RMNSTKSL-- 96
P G G V +KAL ++G+ D+++I N + L L++ + L +MN +L
Sbjct: 280 PAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHG 339
Query: 97 ----IGHLLGASGA 106
+GH G SGA
Sbjct: 340 GAIALGHPFGCSGA 353
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 15 HAKKRGTNIYAEILDGSLTCDAYHITAPHPEGVGMVSCMEKALAKSGVAKEDVNY--INA 72
A KRG A I+ S P G+G + +++A+ K+G + EDV+ IN
Sbjct: 268 EADKRGLTPLARIVSWSQVG-----VEPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINE 322
Query: 73 HAPSTRLGDLREY----QALRMNSTKSLIGHLLGASG 105
+ ++E + + + +GH LGASG
Sbjct: 323 AFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGASG 359
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 42 PHPEGVGMVSCMEKALAKSGVAKEDVNYINAH--------APSTRLGDLREYQALRMNST 93
P G G + KAL ++G D++ + AH A + LG + + +N
Sbjct: 285 PKVMGTGPIPASRKALERAGWKIGDLDLVEAHEAFAAQACAVNKDLG--WDPSIVNVNGG 342
Query: 94 KSLIGHLLGASGA 106
IGH +GASGA
Sbjct: 343 AIAIGHPIGASGA 355
>pdb|1VEE|A Chain A, Nmr Structure Of The Hypothetical Rhodanese Domain
At4g01050 From Arabidopsis Thaliana
pdb|2DCQ|A Chain A, Fully Automated Nmr Structure Determination Of The
Rhodanese Homology Domain At4g01050(175-295) From
Arabidopsis Thaliana
Length = 134
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 15/131 (11%)
Query: 18 KRGTNIYAEILDGSLTCDAYHITAPHPEGVGM--VSCMEKALAKSGVAKEDVNYINAHAP 75
K GT+ A++LD T D + +P+ +G+G VS + K G K+ ++
Sbjct: 15 KLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKK-LSLKFKDPE 73
Query: 76 STRLGDLREYQALRMNSTKSLIGHLLGASGAAEAVATIKAIQ--TGWIHPNLNLENPDKH 133
+T L Y + + L+ L+ +G A A + GW++ +L P K
Sbjct: 74 NTTL-----YILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIEPKK- 127
Query: 134 VLSRTSGASAA 144
TSG S+
Sbjct: 128 ----TSGPSSG 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,255,883
Number of Sequences: 62578
Number of extensions: 193702
Number of successful extensions: 598
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 56
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)