Query 045791
Match_columns 290
No_of_seqs 224 out of 1287
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:33:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03014 carbonic anhydrase 100.0 1.8E-64 3.9E-69 475.9 24.7 248 43-290 72-336 (347)
2 PLN03019 carbonic anhydrase 100.0 3.1E-63 6.7E-68 465.4 25.1 243 47-290 71-330 (330)
3 PLN00416 carbonate dehydratase 100.0 2.7E-60 5.8E-65 436.6 23.8 218 71-288 37-255 (258)
4 PLN03006 carbonate dehydratase 100.0 1.7E-58 3.6E-63 430.1 22.2 220 65-286 61-283 (301)
5 PRK10437 carbonic anhydrase; P 100.0 1.4E-53 3.1E-58 384.0 22.4 196 81-285 2-198 (220)
6 cd00884 beta_CA_cladeB Carboni 100.0 7.8E-54 1.7E-58 378.6 20.0 189 89-278 1-190 (190)
7 PRK15219 carbonic anhydrase; P 100.0 7.9E-53 1.7E-57 384.7 23.9 189 77-278 51-244 (245)
8 PLN02154 carbonic anhydrase 100.0 1.2E-52 2.5E-57 388.9 23.3 205 78-283 71-275 (290)
9 cd00883 beta_CA_cladeA Carboni 100.0 8.2E-53 1.8E-57 369.7 20.0 180 90-278 1-182 (182)
10 COG0288 CynT Carbonic anhydras 100.0 4.9E-52 1.1E-56 371.4 20.3 198 81-285 2-202 (207)
11 cd03378 beta_CA_cladeC Carboni 100.0 1.5E-47 3.3E-52 328.1 18.2 150 79-278 1-154 (154)
12 PF00484 Pro_CA: Carbonic anhy 100.0 5.4E-44 1.2E-48 303.6 15.6 152 116-275 1-153 (153)
13 KOG1578 Predicted carbonic anh 100.0 1.7E-43 3.8E-48 322.1 13.3 201 80-281 60-260 (276)
14 cd00382 beta_CA Carbonic anhyd 100.0 4.7E-42 1E-46 282.6 15.6 119 112-278 1-119 (119)
15 cd03379 beta_CA_cladeD Carboni 100.0 6.8E-39 1.5E-43 271.1 12.3 141 113-278 2-142 (142)
16 KOG1578 Predicted carbonic anh 98.4 2.2E-08 4.8E-13 92.4 -3.7 191 86-279 3-250 (276)
17 PF10070 DUF2309: Uncharacteri 65.7 12 0.00026 40.4 5.7 39 244-282 539-583 (788)
18 COG1254 AcyP Acylphosphatases 55.4 9.7 0.00021 30.1 2.2 19 260-278 29-47 (92)
19 TIGR02742 TrbC_Ftype type-F co 38.9 55 0.0012 27.5 4.4 54 100-172 59-112 (130)
20 PF00355 Rieske: Rieske [2Fe-2 37.7 11 0.00025 28.6 0.1 16 262-277 65-80 (97)
21 PRK11181 23S rRNA (guanosine-2 37.7 1.1E+02 0.0023 28.1 6.5 74 101-184 54-132 (244)
22 PF00009 GTP_EFTU: Elongation 35.4 21 0.00045 30.6 1.4 17 172-188 2-18 (188)
23 PRK14432 acylphosphatase; Prov 34.8 46 0.001 26.1 3.2 20 260-279 27-46 (93)
24 PRK03979 ADP-specific phosphof 32.9 1.1E+02 0.0024 31.1 6.2 55 5-62 321-382 (463)
25 PF04019 DUF359: Protein of un 32.5 2.4E+02 0.0051 23.4 7.2 80 108-195 6-85 (121)
26 PRK14423 acylphosphatase; Prov 32.0 66 0.0014 25.0 3.6 19 260-278 30-48 (92)
27 cd04321 ScAspRS_mt_like_N ScAs 31.2 66 0.0014 24.3 3.5 26 260-285 1-28 (86)
28 PRK14440 acylphosphatase; Prov 31.2 61 0.0013 25.2 3.3 19 260-278 28-46 (90)
29 PRK14430 acylphosphatase; Prov 31.2 58 0.0013 25.5 3.2 19 260-278 29-47 (92)
30 cd03528 Rieske_RO_ferredoxin R 31.1 19 0.00041 27.5 0.4 16 261-276 60-75 (98)
31 PRK11440 putative hydrolase; P 31.0 95 0.0021 26.7 4.9 48 132-189 90-137 (188)
32 PRK14445 acylphosphatase; Prov 30.9 72 0.0016 24.8 3.6 19 260-278 29-47 (91)
33 PF08184 Cuticle_2: Cuticle pr 29.7 26 0.00056 24.6 0.8 13 264-276 7-19 (59)
34 cd01891 TypA_BipA TypA (tyrosi 29.4 33 0.00072 29.4 1.7 14 173-186 2-15 (194)
35 PF05952 ComX: Bacillus compet 29.3 63 0.0014 23.4 2.8 25 242-266 5-29 (57)
36 cd03478 Rieske_AIFL_N AIFL (ap 29.1 18 0.0004 27.6 0.0 15 262-276 60-74 (95)
37 TIGR02045 P_fruct_ADP ADP-spec 28.4 1.6E+02 0.0034 29.9 6.4 53 5-62 307-368 (446)
38 PRK14429 acylphosphatase; Prov 28.1 79 0.0017 24.5 3.4 19 260-278 27-45 (90)
39 PRK14434 acylphosphatase; Prov 28.0 85 0.0018 24.5 3.6 19 260-278 27-46 (92)
40 cd00256 VATPase_H VATPase_H, r 27.6 95 0.0021 31.2 4.7 60 65-124 316-378 (429)
41 TIGR02377 MocE_fam_FeS Rieske 27.0 26 0.00056 27.4 0.5 15 262-276 63-77 (101)
42 PF10500 SR-25: Nuclear RNA-sp 26.8 25 0.00054 32.3 0.4 43 241-284 149-192 (225)
43 PRK14448 acylphosphatase; Prov 26.6 76 0.0017 24.6 3.1 19 260-278 27-45 (90)
44 cd03548 Rieske_RO_Alpha_OMO_CA 26.6 32 0.0007 28.5 1.1 18 261-278 76-93 (136)
45 PRK14441 acylphosphatase; Prov 26.5 1E+02 0.0022 24.1 3.8 19 260-278 30-48 (93)
46 PRK14449 acylphosphatase; Prov 26.1 92 0.002 24.1 3.5 19 260-278 28-46 (90)
47 PRK14451 acylphosphatase; Prov 26.1 81 0.0018 24.4 3.2 19 260-278 28-46 (89)
48 TIGR02378 nirD_assim_sml nitri 25.5 25 0.00055 27.4 0.2 15 262-276 68-82 (105)
49 PRK14436 acylphosphatase; Prov 25.4 95 0.0021 24.2 3.5 19 260-278 29-47 (91)
50 cd01890 LepA LepA subfamily. 25.1 38 0.00082 28.0 1.2 14 174-187 1-14 (179)
51 cd03529 Rieske_NirD Assimilato 25.1 26 0.00055 27.4 0.2 15 262-276 67-81 (103)
52 PF00708 Acylphosphatase: Acyl 24.7 93 0.002 23.8 3.3 19 260-278 29-47 (91)
53 PRK14426 acylphosphatase; Prov 24.7 94 0.002 24.2 3.3 19 260-278 29-47 (92)
54 cd03473 Rieske_CMP_Neu5Ac_hydr 24.4 25 0.00055 28.6 0.0 16 261-276 70-85 (107)
55 PRK14422 acylphosphatase; Prov 24.0 96 0.0021 24.2 3.2 19 260-278 31-49 (93)
56 PRK14420 acylphosphatase; Prov 23.9 1E+02 0.0022 23.8 3.4 19 260-278 27-45 (91)
57 COG1116 TauB ABC-type nitrate/ 23.9 41 0.00089 31.4 1.3 17 172-188 28-44 (248)
58 PRK14425 acylphosphatase; Prov 23.7 1E+02 0.0023 24.1 3.4 19 260-278 31-49 (94)
59 PRK14444 acylphosphatase; Prov 23.5 1E+02 0.0022 24.0 3.3 19 260-278 29-47 (92)
60 PRK09511 nirD nitrite reductas 23.3 29 0.00063 27.7 0.2 15 261-275 70-84 (108)
61 COG2146 {NirD} Ferredoxin subu 23.3 34 0.00073 27.4 0.5 16 261-276 66-81 (106)
62 PRK14446 acylphosphatase; Prov 22.8 1.2E+02 0.0026 23.6 3.5 19 260-278 27-45 (88)
63 PRK09965 3-phenylpropionate di 22.3 33 0.00072 27.0 0.3 15 262-276 63-77 (106)
64 PF01707 Peptidase_C9: Peptida 22.2 27 0.00059 31.4 -0.2 36 244-285 138-174 (202)
65 PRK14433 acylphosphatase; Prov 22.2 1.1E+02 0.0024 23.6 3.3 19 260-278 26-44 (87)
66 PF00857 Isochorismatase: Isoc 21.8 2.5E+02 0.0055 23.2 5.7 45 136-190 85-129 (174)
67 PRK14437 acylphosphatase; Prov 21.7 1E+02 0.0023 24.9 3.1 19 260-278 48-66 (109)
68 PRK14421 acylphosphatase; Prov 21.0 1.2E+02 0.0027 24.1 3.4 19 260-278 29-47 (99)
69 cd03474 Rieske_T4moC Toluene-4 21.0 39 0.00085 26.4 0.5 15 261-275 61-75 (108)
70 cd03530 Rieske_NirD_small_Baci 20.9 31 0.00067 26.5 -0.1 14 262-275 62-75 (98)
71 cd04167 Snu114p Snu114p subfam 20.8 52 0.0011 28.8 1.3 15 174-188 1-15 (213)
72 PRK14438 acylphosphatase; Prov 20.7 1.4E+02 0.0029 23.2 3.5 19 260-278 28-46 (91)
73 PRK14427 acylphosphatase; Prov 20.6 1.4E+02 0.0031 23.3 3.6 19 260-278 31-49 (94)
74 PRK14443 acylphosphatase; Prov 20.5 1.4E+02 0.0031 23.4 3.6 19 260-278 29-47 (93)
75 cd01878 HflX HflX subfamily. 20.5 64 0.0014 27.6 1.8 18 171-188 39-56 (204)
76 PRK14424 acylphosphatase; Prov 20.4 1.3E+02 0.0027 23.7 3.2 19 260-278 32-50 (94)
77 PRK14428 acylphosphatase; Prov 20.3 1.4E+02 0.003 23.7 3.5 19 260-278 33-51 (97)
No 1
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=1.8e-64 Score=475.86 Aligned_cols=248 Identities=55% Similarity=0.946 Sum_probs=222.5
Q ss_pred hHHHHHHHhhh---HHHHHHHHHHHHhhhhh-----------ccccC---CCCCchHHHHHHHHHHhhHhccCCCChhhH
Q 045791 43 KSLRTRLLKTC---KAIELVRMMREKGEADK-----------EVDGH---GHDCFDPVERIIKGFIHFKTSKFDKYPECF 105 (290)
Q Consensus 43 ~~~~~~~~~~~---~~~~~~~~l~~~~~~~~-----------~~~~~---~~~p~~~l~~Ll~GN~rf~~~~~~~~p~~~ 105 (290)
-+||++|...+ ++++|+|+|+++++|++ +++.. +..+++++++|++||++|+++.+..++++|
T Consensus 72 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~~ 151 (347)
T PLN03014 72 PYWSEEMGTEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALY 151 (347)
T ss_pred chhHhhhchhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHHH
Confidence 47999998765 89999999999777665 77642 256899999999999999999999999999
Q ss_pred HhhhcCCCCcEEEEEecCCCCChhhhcCCCCCcEEEEEccCCcCCCCCccccchhhHHHHHHHHhcCCcEEEEEccCCch
Q 045791 106 SELAKGQHPKFLVFACSDSRVSPSHVLDFQPGEAFMARNIANMVPAFNQLRYSCVGATIEYAVANLQVENVLVIGHSRCG 185 (290)
Q Consensus 106 ~~La~gQ~P~~lvItCsDSRV~pe~if~~~pGdlFVvRNaGN~V~~~d~~~~~~~~aSLEyAv~~L~V~~IVV~GHt~CG 185 (290)
++++.||+|+++||+||||||+|+.+||++|||+||+||+||+|+++|...+++++++|||||.+|+|++|||||||+||
T Consensus 152 ~~La~GQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CG 231 (347)
T PLN03014 152 GELAKGQSPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACG 231 (347)
T ss_pred HhhccCCCCCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCch
Confidence 99999999999999999999999999999999999999999999998755445688999999999999999999999999
Q ss_pred hhHHhhcCCCCCCCCccchHHHHHcccchhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCeeEEE
Q 045791 186 GIKRLMSLPDDGSNYYDFIDDWVRIGLPAKAKVKREHPDLSFEQQTALCERESVNLSLVNLLTYPYVQRAVQDGTLALRG 265 (290)
Q Consensus 186 av~aa~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~v~~~v~~g~L~V~G 265 (290)
||+|+++....+....++|++|+..+.|++.....+.+..++.+.+..++++||++||++|+++|+|++++++|+|.|||
T Consensus 232 aV~Aa~~~~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~G 311 (347)
T PLN03014 232 GIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKG 311 (347)
T ss_pred HHHHHHhccccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEEE
Confidence 99999876544444567999999999999887766655567777777788899999999999999999999999999999
Q ss_pred EEEEccCCeEEEEeccCCCCCCcCC
Q 045791 266 GYYDFVNGKFELWELKTDITPPIVI 290 (290)
Q Consensus 266 ~vYDi~TG~v~~~~~~~~~~~~~~~ 290 (290)
|+||+.||+|++|+.+++++|+.|+
T Consensus 312 ~~YDi~TG~V~~l~~~~~~~~~~~~ 336 (347)
T PLN03014 312 GYYDFVKGAFELWGLEFGLSETSSV 336 (347)
T ss_pred EEEECCCceEEEeccccccCCcccc
Confidence 9999999999999999999999875
No 2
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=3.1e-63 Score=465.37 Aligned_cols=243 Identities=58% Similarity=1.003 Sum_probs=213.4
Q ss_pred HHHHhhh---HHHHHHHHHHHHhhhhh-----------cccc---CCCCCchHHHHHHHHHHhhHhccCCCChhhHHhhh
Q 045791 47 TRLLKTC---KAIELVRMMREKGEADK-----------EVDG---HGHDCFDPVERIIKGFIHFKTSKFDKYPECFSELA 109 (290)
Q Consensus 47 ~~~~~~~---~~~~~~~~l~~~~~~~~-----------~~~~---~~~~p~~~l~~Ll~GN~rf~~~~~~~~p~~~~~La 109 (290)
++|.+.+ ++++|+|+|+++++|++ |++. .+++|++++++|++||++|+.+.+..+|++|++|+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~La 150 (330)
T PLN03019 71 RRMGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGELA 150 (330)
T ss_pred HHHhhhhHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCCCCchhHHHHHHHHHHHHHHhccccccHHHHHhhc
Confidence 4455444 89999999999777665 7764 22568999999999999999999988999999999
Q ss_pred cCCCCcEEEEEecCCCCChhhhcCCCCCcEEEEEccCCcCCCCCccccchhhHHHHHHHHhcCCcEEEEEccCCchhhHH
Q 045791 110 KGQHPKFLVFACSDSRVSPSHVLDFQPGEAFMARNIANMVPAFNQLRYSCVGATIEYAVANLQVENVLVIGHSRCGGIKR 189 (290)
Q Consensus 110 ~gQ~P~~lvItCsDSRV~pe~if~~~pGdlFVvRNaGN~V~~~d~~~~~~~~aSLEyAv~~L~V~~IVV~GHt~CGav~a 189 (290)
.||+|+++||+||||||+|+.|||++|||+||+||+||+|+++|...++++++||||||.+|+|++|||||||+||||+|
T Consensus 151 ~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVkA 230 (330)
T PLN03019 151 KGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKG 230 (330)
T ss_pred cCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHHH
Confidence 99999999999999999999999999999999999999999987655567889999999999999999999999999999
Q ss_pred hhcCCCCCCCCccchHHHHHcccchhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCeeEEEEEEE
Q 045791 190 LMSLPDDGSNYYDFIDDWVRIGLPAKAKVKREHPDLSFEQQTALCERESVNLSLVNLLTYPYVQRAVQDGTLALRGGYYD 269 (290)
Q Consensus 190 a~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~v~~~v~~g~L~V~G~vYD 269 (290)
+++....+....++|+.|+..+.|++.......+..++.+.+..+++ ||+.|+++|+++|+|++++++|+|.||||+||
T Consensus 231 al~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~-NV~~qv~nL~t~P~V~e~v~~G~L~I~G~~YD 309 (330)
T PLN03019 231 LMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER-AVNVSLANLLTYPFVREGVVKGTLALKGGYYD 309 (330)
T ss_pred HHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEE
Confidence 98765444445679999999999988766554444566666655665 99999999999999999999999999999999
Q ss_pred ccCCeEEEEeccCCCCCCcCC
Q 045791 270 FVNGKFELWELKTDITPPIVI 290 (290)
Q Consensus 270 i~TG~v~~~~~~~~~~~~~~~ 290 (290)
+.||+|++|+.+++++|++|+
T Consensus 310 l~TG~V~~~~~~~~~~~~~~~ 330 (330)
T PLN03019 310 FVNGSFELWELQFGISPVHSI 330 (330)
T ss_pred CCCceEEEEccccCcCCCCcC
Confidence 999999999999999999985
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=2.7e-60 Score=436.59 Aligned_cols=218 Identities=58% Similarity=0.979 Sum_probs=191.5
Q ss_pred ccccCCCCCchHHHHHHHHHHhhHhccCCCChhhHHhhhcCCCCcEEEEEecCCCCChhhhcCCCCCcEEEEEccCCcCC
Q 045791 71 EVDGHGHDCFDPVERIIKGFIHFKTSKFDKYPECFSELAKGQHPKFLVFACSDSRVSPSHVLDFQPGEAFMARNIANMVP 150 (290)
Q Consensus 71 ~~~~~~~~p~~~l~~Ll~GN~rf~~~~~~~~p~~~~~La~gQ~P~~lvItCsDSRV~pe~if~~~pGdlFVvRNaGN~V~ 150 (290)
.+++...+|.+++++|++||+||+++++..++++|++++.||+|+++|||||||||+|+.|||++|||+||+||+||+|+
T Consensus 37 ~~~~~~~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~ 116 (258)
T PLN00416 37 ELKELDSSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQTPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVP 116 (258)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccC
Confidence 56665578999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CCCccccchhhHHHHHHHHhcCCcEEEEEccCCchhhHHhhcCCCCC-CCCccchHHHHHcccchhhhhhhcCCCCCHHH
Q 045791 151 AFNQLRYSCVGATIEYAVANLQVENVLVIGHSRCGGIKRLMSLPDDG-SNYYDFIDDWVRIGLPAKAKVKREHPDLSFEQ 229 (290)
Q Consensus 151 ~~d~~~~~~~~aSLEyAv~~L~V~~IVV~GHt~CGav~aa~~~~~~~-~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~ 229 (290)
++|....+++++|||||+.+|||++|||||||+||||+|+++..... ....+++..|+....|+...........++.+
T Consensus 117 ~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~ 196 (258)
T PLN00416 117 PFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSIEDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDD 196 (258)
T ss_pred CccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHhccccccccccchHHHHHHHHHHHHHHHHhhccCCCHHH
Confidence 87754345688999999999999999999999999999998643221 11235799999988888766554444456666
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCeeEEEEEEEccCCeEEEEeccCCCCCCc
Q 045791 230 QTALCERESVNLSLVNLLTYPYVQRAVQDGTLALRGGYYDFVNGKFELWELKTDITPPI 288 (290)
Q Consensus 230 ~~~~~~~~nV~~qv~~L~~~p~v~~~v~~g~L~V~G~vYDi~TG~v~~~~~~~~~~~~~ 288 (290)
.++.++++||++|+++|+++|+|++++++|++.||||+||++||+|++++++++-+|..
T Consensus 197 ~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G~~Ydl~TG~v~~~~~~~~~~p~~ 255 (258)
T PLN00416 197 QCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRGGHYNFVKGTFDLWELDFKTTPAF 255 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEeccCcCCCCCc
Confidence 66678889999999999999999999999999999999999999999999999999875
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=1.7e-58 Score=430.11 Aligned_cols=220 Identities=43% Similarity=0.782 Sum_probs=193.3
Q ss_pred HhhhhhccccCC---CCCchHHHHHHHHHHhhHhccCCCChhhHHhhhcCCCCcEEEEEecCCCCChhhhcCCCCCcEEE
Q 045791 65 KGEADKEVDGHG---HDCFDPVERIIKGFIHFKTSKFDKYPECFSELAKGQHPKFLVFACSDSRVSPSHVLDFQPGEAFM 141 (290)
Q Consensus 65 ~~~~~~~~~~~~---~~p~~~l~~Ll~GN~rf~~~~~~~~p~~~~~La~gQ~P~~lvItCsDSRV~pe~if~~~pGdlFV 141 (290)
+.++.+|++... ..|++++++|++||.+|+..++..+|++|++|+.||+|+++||+||||||+|+.|||++|||+||
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe~Ifd~~pGDlFV 140 (301)
T PLN03006 61 TPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPSAVLGFQPGDAFT 140 (301)
T ss_pred hHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHHHHhCCCCCCEEE
Confidence 455666666533 34899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcCCCCCccccchhhHHHHHHHHhcCCcEEEEEccCCchhhHHhhcCCCCCCCCccchHHHHHcccchhhhhhhc
Q 045791 142 ARNIANMVPAFNQLRYSCVGATIEYAVANLQVENVLVIGHSRCGGIKRLMSLPDDGSNYYDFIDDWVRIGLPAKAKVKRE 221 (290)
Q Consensus 142 vRNaGN~V~~~d~~~~~~~~aSLEyAv~~L~V~~IVV~GHt~CGav~aa~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~ 221 (290)
+||+||+|+++|.+. .++.+||||||.+|+|++|||||||+||||+|++...+.+. .+++|+.|+..+.|++..+...
T Consensus 141 VRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g~-~~~~I~~wv~~~~~a~~~v~~~ 218 (301)
T PLN03006 141 VRNIANLVPPYESGP-TETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEGD-SRSFIHNWVVVGKKAKESTKAV 218 (301)
T ss_pred EeccccccCCccccc-cchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccCC-chhHHHHHHHHHHHHHHHHhhh
Confidence 999999999987533 46889999999999999999999999999999987654443 4678999999888877665443
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCeeEEEEEEEccCCeEEEEeccCCCCC
Q 045791 222 HPDLSFEQQTALCERESVNLSLVNLLTYPYVQRAVQDGTLALRGGYYDFVNGKFELWELKTDITP 286 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~v~~~v~~g~L~V~G~vYDi~TG~v~~~~~~~~~~~ 286 (290)
.....++++++.++++||++|+++|++||+|++++++|+|.||||+||+.||+++.|+++++++.
T Consensus 219 ~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~~~~~~~~~ 283 (301)
T PLN03006 219 ASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWTVDYAASR 283 (301)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEecccccccc
Confidence 33446777888899999999999999999999999999999999999999999999999997763
No 5
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=1.4e-53 Score=383.95 Aligned_cols=196 Identities=25% Similarity=0.412 Sum_probs=173.7
Q ss_pred hHHHHHHHHHHhhHhccCCCChhhHHhhhcCCCCcEEEEEecCCCCChhhhcCCCCCcEEEEEccCCcCCCCCccccchh
Q 045791 81 DPVERIIKGFIHFKTSKFDKYPECFSELAKGQHPKFLVFACSDSRVSPSHVLDFQPGEAFMARNIANMVPAFNQLRYSCV 160 (290)
Q Consensus 81 ~~l~~Ll~GN~rf~~~~~~~~p~~~~~La~gQ~P~~lvItCsDSRV~pe~if~~~pGdlFVvRNaGN~V~~~d~~~~~~~ 160 (290)
..+++|++||++|+++.+..+|++|++++.+|+|+++|||||||||+|+.+||++|||+||+||+||+|++.|. ++
T Consensus 2 ~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~ 77 (220)
T PRK10437 2 KDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NC 77 (220)
T ss_pred chHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----ch
Confidence 35889999999999998888999999999999999999999999999999999999999999999999987664 47
Q ss_pred hHHHHHHHHhcCCcEEEEEccCCchhhHHhhcCCCCCCCCccchHHHHHcccchhhhhhhcCCCCCHHHHHHHHHHHHHH
Q 045791 161 GATIEYAVANLQVENVLVIGHSRCGGIKRLMSLPDDGSNYYDFIDDWVRIGLPAKAKVKREHPDLSFEQQTALCERESVN 240 (290)
Q Consensus 161 ~aSLEyAv~~L~V~~IVV~GHt~CGav~aa~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~ 240 (290)
+++||||+.+|+|++|||||||+||||+|+++.. ..+++..|+....|+...........+..+..+.++++||+
T Consensus 78 ~~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~-----~~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~ 152 (220)
T PRK10437 78 LSVVQYAVDVLEVEHIIICGHYGCGGVQAAVENP-----ELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVM 152 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCC-----CcccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998642 23689999999888876544444444556677788899999
Q ss_pred HHHHHHhcCHHHHHHHhCC-CeeEEEEEEEccCCeEEEEeccCCCC
Q 045791 241 LSLVNLLTYPYVQRAVQDG-TLALRGGYYDFVNGKFELWELKTDIT 285 (290)
Q Consensus 241 ~qv~~L~~~p~v~~~v~~g-~L~V~G~vYDi~TG~v~~~~~~~~~~ 285 (290)
.|+++|+++|+|++++++| +|.||||+||+.||+|+.++......
T Consensus 153 ~qv~~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~~ 198 (220)
T PRK10437 153 EQVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNR 198 (220)
T ss_pred HHHHHHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCch
Confidence 9999999999999999999 69999999999999999988765443
No 6
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=7.8e-54 Score=378.61 Aligned_cols=189 Identities=46% Similarity=0.759 Sum_probs=165.9
Q ss_pred HHHhhHhccCCCChhhHHhhhcCCCCcEEEEEecCCCCChhhhcCCCCCcEEEEEccCCcCCCCCcc-ccchhhHHHHHH
Q 045791 89 GFIHFKTSKFDKYPECFSELAKGQHPKFLVFACSDSRVSPSHVLDFQPGEAFMARNIANMVPAFNQL-RYSCVGATIEYA 167 (290)
Q Consensus 89 GN~rf~~~~~~~~p~~~~~La~gQ~P~~lvItCsDSRV~pe~if~~~pGdlFVvRNaGN~V~~~d~~-~~~~~~aSLEyA 167 (290)
||++|++..+..++++|++++.||+|+++|||||||||+|+.+||.+|||+||+||+||+|++++.. .+.++++|||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 7999999988889999999999999999999999999999999999999999999999999986531 234688999999
Q ss_pred HHhcCCcEEEEEccCCchhhHHhhcCCCCCCCCccchHHHHHcccchhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 045791 168 VANLQVENVLVIGHSRCGGIKRLMSLPDDGSNYYDFIDDWVRIGLPAKAKVKREHPDLSFEQQTALCERESVNLSLVNLL 247 (290)
Q Consensus 168 v~~L~V~~IVV~GHt~CGav~aa~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~ 247 (290)
+.+|+|++|||||||+||||+|+++... +....+++..|+....|+........+..+..+..+.++++||.+|+++|+
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~ 159 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLL 159 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986533 123356899999998888876655443445556677889999999999999
Q ss_pred cCHHHHHHHhCCCeeEEEEEEEccCCeEEEE
Q 045791 248 TYPYVQRAVQDGTLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 248 ~~p~v~~~v~~g~L~V~G~vYDi~TG~v~~~ 278 (290)
++|+|++++++|+|.|||||||+.||+|+.+
T Consensus 160 ~~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 160 TYPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred hCHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 9999999999999999999999999999864
No 7
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=7.9e-53 Score=384.71 Aligned_cols=189 Identities=23% Similarity=0.362 Sum_probs=163.8
Q ss_pred CCCchHHHHHHHHHHhhHhccCCCChhhH---HhhhcCCCCcEEEEEecCCCCChhhhcCCCCCcEEEEEccCCcCCCCC
Q 045791 77 HDCFDPVERIIKGFIHFKTSKFDKYPECF---SELAKGQHPKFLVFACSDSRVSPSHVLDFQPGEAFMARNIANMVPAFN 153 (290)
Q Consensus 77 ~~p~~~l~~Ll~GN~rf~~~~~~~~p~~~---~~La~gQ~P~~lvItCsDSRV~pe~if~~~pGdlFVvRNaGN~V~~~d 153 (290)
.+|.+++++|++||+||+++.+. .++++ .+++.||+|+++||||||||||||.+||++|||+||+||+||+|++.
T Consensus 51 ~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~~- 128 (245)
T PRK15219 51 MTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISNDD- 128 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCcc-
Confidence 78999999999999999999875 45544 24678999999999999999999999999999999999999999752
Q ss_pred ccccchhhHHHHHHHHhcCCcEEEEEccCCchhhHHhhcCCCCCCCCccchHHHHHcccchhhhhhhcC-CCCCHHHHHH
Q 045791 154 QLRYSCVGATIEYAVANLQVENVLVIGHSRCGGIKRLMSLPDDGSNYYDFIDDWVRIGLPAKAKVKREH-PDLSFEQQTA 232 (290)
Q Consensus 154 ~~~~~~~~aSLEyAv~~L~V~~IVV~GHt~CGav~aa~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~-~~~~~~~~~~ 232 (290)
+++|||||+.+|+|++|||||||+||||+|+++... .+++..|++.+.|+........ ...+.++..+
T Consensus 129 ------~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~-----~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~ 197 (245)
T PRK15219 129 ------LLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE-----LGNLTGLLDRIKPAIEVTEFDGERSSKNYKFVD 197 (245)
T ss_pred ------hhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC-----cchHHHHHHHHHHHHHHHhhcccccCCHHHHHH
Confidence 678999999999999999999999999999986432 4579999999888876543211 1123456667
Q ss_pred HHHHHHHHHHHHHHhc-CHHHHHHHhCCCeeEEEEEEEccCCeEEEE
Q 045791 233 LCERESVNLSLVNLLT-YPYVQRAVQDGTLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 233 ~~~~~nV~~qv~~L~~-~p~v~~~v~~g~L~V~G~vYDi~TG~v~~~ 278 (290)
.++++||+.|+++|++ +|++++++++|+|+||||+||++||+|+++
T Consensus 198 ~~~~~NV~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 198 AVARKNVELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 7889999999999986 899999999999999999999999999987
No 8
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=1.2e-52 Score=388.90 Aligned_cols=205 Identities=39% Similarity=0.705 Sum_probs=176.2
Q ss_pred CCchHHHHHHHHHHhhHhccCCCChhhHHhhhcCCCCcEEEEEecCCCCChhhhcCCCCCcEEEEEccCCcCCCCCcccc
Q 045791 78 DCFDPVERIIKGFIHFKTSKFDKYPECFSELAKGQHPKFLVFACSDSRVSPSHVLDFQPGEAFMARNIANMVPAFNQLRY 157 (290)
Q Consensus 78 ~p~~~l~~Ll~GN~rf~~~~~~~~p~~~~~La~gQ~P~~lvItCsDSRV~pe~if~~~pGdlFVvRNaGN~V~~~d~~~~ 157 (290)
...+.+++|++||++|+.+++..+++.|++|+.||+|+++||+||||||||+.|||++|||+||+||+||+|++++.. +
T Consensus 71 ~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g-~ 149 (290)
T PLN02154 71 TSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNG-P 149 (290)
T ss_pred hhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCC-c
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999987542 2
Q ss_pred chhhHHHHHHHHhcCCcEEEEEccCCchhhHHhhcCCCCCCCCccchHHHHHcccchhhhhhhcCCCCCHHHHHHHHHHH
Q 045791 158 SCVGATIEYAVANLQVENVLVIGHSRCGGIKRLMSLPDDGSNYYDFIDDWVRIGLPAKAKVKREHPDLSFEQQTALCERE 237 (290)
Q Consensus 158 ~~~~aSLEyAv~~L~V~~IVV~GHt~CGav~aa~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~ 237 (290)
.++++||||||.+|+|++|||||||+||||+|+++.........++++.|+..+.++........+...+++.++.++++
T Consensus 150 ~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~~~~~e~~ 229 (290)
T PLN02154 150 TETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQCRNCEKE 229 (290)
T ss_pred cchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHH
Confidence 35889999999999999999999999999999987432222335689999987666554333222334556667778889
Q ss_pred HHHHHHHHHhcCHHHHHHHhCCCeeEEEEEEEccCCeEEEEeccCC
Q 045791 238 SVNLSLVNLLTYPYVQRAVQDGTLALRGGYYDFVNGKFELWELKTD 283 (290)
Q Consensus 238 nV~~qv~~L~~~p~v~~~v~~g~L~V~G~vYDi~TG~v~~~~~~~~ 283 (290)
||+.|+++|+++|+|++++++|+|+||||+||+.||+|+.|+.+.+
T Consensus 230 NV~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~ 275 (290)
T PLN02154 230 SIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSD 275 (290)
T ss_pred HHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccC
Confidence 9999999999999999999999999999999999999999988764
No 9
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=8.2e-53 Score=369.71 Aligned_cols=180 Identities=32% Similarity=0.465 Sum_probs=157.9
Q ss_pred HHhhHhccCCCChhhHHhhhcCCCCcEEEEEecCCCCChhhhcCCCCCcEEEEEccCCcCCCCCccccchhhHHHHHHHH
Q 045791 90 FIHFKTSKFDKYPECFSELAKGQHPKFLVFACSDSRVSPSHVLDFQPGEAFMARNIANMVPAFNQLRYSCVGATIEYAVA 169 (290)
Q Consensus 90 N~rf~~~~~~~~p~~~~~La~gQ~P~~lvItCsDSRV~pe~if~~~pGdlFVvRNaGN~V~~~d~~~~~~~~aSLEyAv~ 169 (290)
|++|.++.+...|++|++++.||+|+++|||||||||+|+.+||++|||+||+||+||+|++.|. ++.+|||||+.
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~ 76 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVD 76 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999998754 47899999999
Q ss_pred hcCCcEEEEEccCCchhhHHhhcCCCCCCCCccchHHHHHcccchhhhhhhcCCC-CCHHHHHHHHHHHHHHHHHHHHhc
Q 045791 170 NLQVENVLVIGHSRCGGIKRLMSLPDDGSNYYDFIDDWVRIGLPAKAKVKREHPD-LSFEQQTALCERESVNLSLVNLLT 248 (290)
Q Consensus 170 ~L~V~~IVV~GHt~CGav~aa~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~-~~~~~~~~~~~~~nV~~qv~~L~~ 248 (290)
+|||++|||||||+|||++|+++.. ..+.+..|+....++.......... .+..+..+.++++||++|+++|++
T Consensus 77 ~L~v~~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~ 151 (182)
T cd00883 77 VLKVKHIIVCGHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCK 151 (182)
T ss_pred hcCCCEEEEecCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998642 2467999998877766543322222 244455667889999999999999
Q ss_pred CHHHHHHHhC-CCeeEEEEEEEccCCeEEEE
Q 045791 249 YPYVQRAVQD-GTLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 249 ~p~v~~~v~~-g~L~V~G~vYDi~TG~v~~~ 278 (290)
+|+|++++++ |+|.||||+||+.||+|+.+
T Consensus 152 ~p~i~~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 152 TPIVQDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred CHHHHHHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 9999999999 89999999999999999753
No 10
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-52 Score=371.41 Aligned_cols=198 Identities=31% Similarity=0.467 Sum_probs=167.6
Q ss_pred hHHHHHHHHHHhhHhccCCCChhhHHhhh-cCCCCcEEEEEecCCCCChhhhcCCCCCcEEEEEccCCcCCCCCccccch
Q 045791 81 DPVERIIKGFIHFKTSKFDKYPECFSELA-KGQHPKFLVFACSDSRVSPSHVLDFQPGEAFMARNIANMVPAFNQLRYSC 159 (290)
Q Consensus 81 ~~l~~Ll~GN~rf~~~~~~~~p~~~~~La-~gQ~P~~lvItCsDSRV~pe~if~~~pGdlFVvRNaGN~V~~~d~~~~~~ 159 (290)
+.++.|++||++|.++.++..+.+|+.++ .+|+|+++|||||||||+||.+||++|||+||+|||||+|++++. +
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~~----~ 77 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPDG----S 77 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCcc----c
Confidence 56899999999999999888899998876 569999999999999999999999999999999999999998653 5
Q ss_pred hhHHHHHHHHhcCCcEEEEEccCCchhhHHhhcCCCCCCCCccchHHHHHcccchhhhhhhcCCCCCHH-HHHHHHHHHH
Q 045791 160 VGATIEYAVANLQVENVLVIGHSRCGGIKRLMSLPDDGSNYYDFIDDWVRIGLPAKAKVKREHPDLSFE-QQTALCERES 238 (290)
Q Consensus 160 ~~aSLEyAv~~L~V~~IVV~GHt~CGav~aa~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~-~~~~~~~~~n 238 (290)
+++|||||+.+|||++|||||||+|||++|+++....+.. .+..|+....+.........+..... ++....++.|
T Consensus 78 ~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~n 154 (207)
T COG0288 78 VLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDN 154 (207)
T ss_pred hhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHH
Confidence 8899999999999999999999999999999876544332 58999977666554443322222222 4555677899
Q ss_pred HHHHHHHHhcCHHHHHHHhCCC-eeEEEEEEEccCCeEEEEeccCCCC
Q 045791 239 VNLSLVNLLTYPYVQRAVQDGT-LALRGGYYDFVNGKFELWELKTDIT 285 (290)
Q Consensus 239 V~~qv~~L~~~p~v~~~v~~g~-L~V~G~vYDi~TG~v~~~~~~~~~~ 285 (290)
|+.|+++|+++|.|++++..|+ |.||||+||++||+++.++......
T Consensus 155 V~~qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~~ 202 (207)
T COG0288 155 VREQVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATIDF 202 (207)
T ss_pred HHHHHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEecccccc
Confidence 9999999999999999999987 9999999999999999887766543
No 11
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.5e-47 Score=328.08 Aligned_cols=150 Identities=34% Similarity=0.509 Sum_probs=137.5
Q ss_pred CchHHHHHHHHHHhhHhccCCC---ChhhHHhhhcCCCCcEEEEEecCCCCChhhhcCCCCCcEEEEEccCCcCCCCCcc
Q 045791 79 CFDPVERIIKGFIHFKTSKFDK---YPECFSELAKGQHPKFLVFACSDSRVSPSHVLDFQPGEAFMARNIANMVPAFNQL 155 (290)
Q Consensus 79 p~~~l~~Ll~GN~rf~~~~~~~---~p~~~~~La~gQ~P~~lvItCsDSRV~pe~if~~~pGdlFVvRNaGN~V~~~d~~ 155 (290)
|++++++|++||++|.+++... +++.|.+++++|+|+++||||||||++|+.+||.+|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 6889999999999999986431 256788999999999999999999999999999999999999999999986
Q ss_pred ccchhhHHHHHHHHhcCCcEEEEEccCCchhhHHhhcCCCCCCCCccchHHHHHcccchhhhhhhcCCCCCHHHHHHHHH
Q 045791 156 RYSCVGATIEYAVANLQVENVLVIGHSRCGGIKRLMSLPDDGSNYYDFIDDWVRIGLPAKAKVKREHPDLSFEQQTALCE 235 (290)
Q Consensus 156 ~~~~~~aSLEyAv~~L~V~~IVV~GHt~CGav~aa~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~ 235 (290)
++.+|||||+.+|||++|||||||+||+++++ ++
T Consensus 77 ---~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~-------------------------------------------~~ 110 (154)
T cd03378 77 ---DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA-------------------------------------------AV 110 (154)
T ss_pred ---hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH-------------------------------------------HH
Confidence 36799999999999999999999999999874 24
Q ss_pred HHHHHHHHHHHhcCHHHHH-HHhCCCeeEEEEEEEccCCeEEEE
Q 045791 236 RESVNLSLVNLLTYPYVQR-AVQDGTLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 236 ~~nV~~qv~~L~~~p~v~~-~v~~g~L~V~G~vYDi~TG~v~~~ 278 (290)
++||+.|+++|+++|++++ ++++|+++||||+||++||+++++
T Consensus 111 ~~nV~~~v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 111 RANVKATVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 6799999999999999888 999999999999999999999874
No 12
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=5.4e-44 Score=303.59 Aligned_cols=152 Identities=34% Similarity=0.552 Sum_probs=121.9
Q ss_pred EEEEEecCCCCChhhhcCCCCCcEEEEEccCCcCCCCCccccchhhHHHHHHHHhcCCcEEEEEccCCchhhHHhhcCCC
Q 045791 116 FLVFACSDSRVSPSHVLDFQPGEAFMARNIANMVPAFNQLRYSCVGATIEYAVANLQVENVLVIGHSRCGGIKRLMSLPD 195 (290)
Q Consensus 116 ~lvItCsDSRV~pe~if~~~pGdlFVvRNaGN~V~~~d~~~~~~~~aSLEyAv~~L~V~~IVV~GHt~CGav~aa~~~~~ 195 (290)
++||||||||++|+.+||.+|||+||+||+||+|++.+. ++++|||||+.+|++++|||||||+|||+++++....
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~~----~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~ 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPDD----SALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-H----HHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCcccc----chhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc
Confidence 689999999999999999999999999999999987643 5889999999999999999999999999998876211
Q ss_pred CCCCCccchHHHHHcccchhhhhhhcC-CCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCeeEEEEEEEccCCe
Q 045791 196 DGSNYYDFIDDWVRIGLPAKAKVKREH-PDLSFEQQTALCERESVNLSLVNLLTYPYVQRAVQDGTLALRGGYYDFVNGK 274 (290)
Q Consensus 196 ~~~~~~~~i~~wl~~~~pa~~~~~~~~-~~~~~~~~~~~~~~~nV~~qv~~L~~~p~v~~~v~~g~L~V~G~vYDi~TG~ 274 (290)
..+.+++|++...|+......+. ......+.....+++||++|+++|+++|+|++++++|++.||||+||++||+
T Consensus 77 ----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~ 152 (153)
T PF00484_consen 77 ----EDGFLRDWLQKIRPALEECVDELLPSSWDFEDLDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGK 152 (153)
T ss_dssp ----TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTE
T ss_pred ----ccchHHHHHHhhhhhHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCcc
Confidence 34689999998888776532221 2222222333447899999999999999999999999999999999999998
Q ss_pred E
Q 045791 275 F 275 (290)
Q Consensus 275 v 275 (290)
|
T Consensus 153 v 153 (153)
T PF00484_consen 153 V 153 (153)
T ss_dssp E
T ss_pred C
Confidence 6
No 13
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=322.12 Aligned_cols=201 Identities=46% Similarity=0.766 Sum_probs=190.4
Q ss_pred chHHHHHHHHHHhhHhccCCCChhhHHhhhcCCCCcEEEEEecCCCCChhhhcCCCCCcEEEEEccCCcCCCCCccccch
Q 045791 80 FDPVERIIKGFIHFKTSKFDKYPECFSELAKGQHPKFLVFACSDSRVSPSHVLDFQPGEAFMARNIANMVPAFNQLRYSC 159 (290)
Q Consensus 80 ~~~l~~Ll~GN~rf~~~~~~~~p~~~~~La~gQ~P~~lvItCsDSRV~pe~if~~~pGdlFVvRNaGN~V~~~d~~~~~~ 159 (290)
.+.+++++++|..|.++.+.++|.+|.+++++|+|+.+||+|+||||+|++|++++|||.|++||++|+|+|.|...+..
T Consensus 60 ~~~~~~i~~~Fv~~~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~ 139 (276)
T KOG1578|consen 60 FDTLEDIGDMFVVRNSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTN 139 (276)
T ss_pred cchHHHHHhhHhhhccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999988777777
Q ss_pred hhHHHHHHHHhcCCcEEEEEccCCchhhHHhhcCCCCCCCCccchHHHHHcccchhhhhhhcCCCCCHHHHHHHHHHHHH
Q 045791 160 VGATIEYAVANLQVENVLVIGHSRCGGIKRLMSLPDDGSNYYDFIDDWVRIGLPAKAKVKREHPDLSFEQQTALCERESV 239 (290)
Q Consensus 160 ~~aSLEyAv~~L~V~~IVV~GHt~CGav~aa~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV 239 (290)
++|+|||+|.+|+|++|+||||++|||+++++....++. ..+++..|.....+++..+..+...+.+.+++..|+.+.+
T Consensus 140 ~~AalE~aV~~lkvenIiv~ghs~cgGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~ 218 (276)
T KOG1578|consen 140 VGAALEYAVTTLKVENIIVIGHSLCGGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAF 218 (276)
T ss_pred ccchHHHHHHHhccceEEEeccccCCchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHH
Confidence 899999999999999999999999999999998776655 6789999998888888888887778899999999999999
Q ss_pred HHHHHHHhcCHHHHHHHhCCCeeEEEEEEEccCCeEEEEecc
Q 045791 240 NLSLVNLLTYPYVQRAVQDGTLALRGGYYDFVNGKFELWELK 281 (290)
Q Consensus 240 ~~qv~~L~~~p~v~~~v~~g~L~V~G~vYDi~TG~v~~~~~~ 281 (290)
..++.+|.+||++++++.+|.+.+||++||+..|..++|.++
T Consensus 219 ~~s~~~l~sy~~vr~~v~k~~l~~~G~~Y~fskg~~~~~~ld 260 (276)
T KOG1578|consen 219 LVSLARLLSYPFVREAVVKGFLQVHGGYYNFSKGTKEFWELD 260 (276)
T ss_pred HHHHHHHhcChHHHHHHhhcceeeeeeeEEeccCceeEEEec
Confidence 999999999999999999999999999999999999999999
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=4.7e-42 Score=282.58 Aligned_cols=119 Identities=41% Similarity=0.726 Sum_probs=111.6
Q ss_pred CCCcEEEEEecCCCCChhhhcCCCCCcEEEEEccCCcCCCCCccccchhhHHHHHHHHhcCCcEEEEEccCCchhhHHhh
Q 045791 112 QHPKFLVFACSDSRVSPSHVLDFQPGEAFMARNIANMVPAFNQLRYSCVGATIEYAVANLQVENVLVIGHSRCGGIKRLM 191 (290)
Q Consensus 112 Q~P~~lvItCsDSRV~pe~if~~~pGdlFVvRNaGN~V~~~d~~~~~~~~aSLEyAv~~L~V~~IVV~GHt~CGav~aa~ 191 (290)
|+|+++||||||||++|+.+||++|||+||+||+||+|++.|. ++++|||||+.+||+++|+|||||+||++++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~~----~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a-- 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYDL----DVLASLEYAVEVLGVKHIIVCGHTDCGAVKA-- 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCcc----cHHHHHHHHHHhhCCCEEEEEccCCCcHHHH--
Confidence 7899999999999999999999999999999999999987543 5889999999999999999999999999975
Q ss_pred cCCCCCCCCccchHHHHHcccchhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCeeEEEEEEEcc
Q 045791 192 SLPDDGSNYYDFIDDWVRIGLPAKAKVKREHPDLSFEQQTALCERESVNLSLVNLLTYPYVQRAVQDGTLALRGGYYDFV 271 (290)
Q Consensus 192 ~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~v~~~v~~g~L~V~G~vYDi~ 271 (290)
.+++||++|+++|+++|+++++++.+++.|||++||++
T Consensus 75 ------------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~ 112 (119)
T cd00382 75 ------------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIE 112 (119)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECC
Confidence 24579999999999999999999999999999999999
Q ss_pred CCeEEEE
Q 045791 272 NGKFELW 278 (290)
Q Consensus 272 TG~v~~~ 278 (290)
||+++++
T Consensus 113 tG~v~~~ 119 (119)
T cd00382 113 TGKLEVL 119 (119)
T ss_pred CCEEEeC
Confidence 9999864
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=6.8e-39 Score=271.10 Aligned_cols=141 Identities=22% Similarity=0.252 Sum_probs=111.9
Q ss_pred CCcEEEEEecCCCCChhhhcCCCCCcEEEEEccCCcCCCCCccccchhhHHHHHHHHhcCCcEEEEEccCCchhhHHhhc
Q 045791 113 HPKFLVFACSDSRVSPSHVLDFQPGEAFMARNIANMVPAFNQLRYSCVGATIEYAVANLQVENVLVIGHSRCGGIKRLMS 192 (290)
Q Consensus 113 ~P~~lvItCsDSRV~pe~if~~~pGdlFVvRNaGN~V~~~d~~~~~~~~aSLEyAv~~L~V~~IVV~GHt~CGav~aa~~ 192 (290)
.++++||||||||++|+.+||.+|||+||+|||||+|++ ++++|||||+.+||+++|+|||||+|||++++.+
T Consensus 2 ~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~~ 74 (142)
T cd03379 2 ARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTDE 74 (142)
T ss_pred CceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecHH
Confidence 579999999999999999999999999999999999986 3678999999999999999999999999998643
Q ss_pred CCCCCCCCccchHHHHHcccchhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCeeEEEEEEEccC
Q 045791 193 LPDDGSNYYDFIDDWVRIGLPAKAKVKREHPDLSFEQQTALCERESVNLSLVNLLTYPYVQRAVQDGTLALRGGYYDFVN 272 (290)
Q Consensus 193 ~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~v~~~v~~g~L~V~G~vYDi~T 272 (290)
.+..|+............ ...........+++||++|+++|+++|++++ +++||||+||++|
T Consensus 75 ----------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~V~G~~ydi~t 136 (142)
T cd03379 75 ----------ELKEKMKERGIAEAYGGI---DKEFWFLGFDDLEESVREDVERIRNHPLIPD-----DVPVHGYVYDVKT 136 (142)
T ss_pred ----------HHHHHHHHhcCcchhccc---CcchhhcccccHHHHHHHHHHHHHhCcCccC-----CCEEEEEEEECCC
Confidence 245566432111000000 0111111123567899999999999999997 7999999999999
Q ss_pred CeEEEE
Q 045791 273 GKFELW 278 (290)
Q Consensus 273 G~v~~~ 278 (290)
|+++.+
T Consensus 137 G~v~~v 142 (142)
T cd03379 137 GKLTEV 142 (142)
T ss_pred CEEEeC
Confidence 999753
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.35 E-value=2.2e-08 Score=92.41 Aligned_cols=191 Identities=19% Similarity=0.247 Sum_probs=124.7
Q ss_pred HHHHHHhhHhccCCCChhhHHhhhcCCCCcEEEEEecCCCCChhhh----------------cCCCCCcEEEEEccCCcC
Q 045791 86 IIKGFIHFKTSKFDKYPECFSELAKGQHPKFLVFACSDSRVSPSHV----------------LDFQPGEAFMARNIANMV 149 (290)
Q Consensus 86 Ll~GN~rf~~~~~~~~p~~~~~La~gQ~P~~lvItCsDSRV~pe~i----------------f~~~pGdlFVvRNaGN~V 149 (290)
|+.|..||+..... ++..++..-++|.+..++|+|||.-|..- +....||.|++||.||..
T Consensus 3 i~~~~~~~~~t~~~---~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRK---DLVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHH---HhHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 66788888877643 23366777788999999999999999877 677899999999999999
Q ss_pred CCCCc----c-ccchhhHHHHHHHHhcCCcEEEEEccCCchhhHHhhcCCC--CCC---CCccchHHHHHccc-------
Q 045791 150 PAFNQ----L-RYSCVGATIEYAVANLQVENVLVIGHSRCGGIKRLMSLPD--DGS---NYYDFIDDWVRIGL------- 212 (290)
Q Consensus 150 ~~~d~----~-~~~~~~aSLEyAv~~L~V~~IVV~GHt~CGav~aa~~~~~--~~~---~~~~~i~~wl~~~~------- 212 (290)
+.... . ..+.-..+|+.|+......+|+||||++|-+++....... +.. .....++-|+....
T Consensus 80 ~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ 159 (276)
T KOG1578|consen 80 PNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVI 159 (276)
T ss_pred CChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEe
Confidence 85221 0 0111224677888888899999999999999997654322 111 12256888875321
Q ss_pred --c------hhhhhhhcCCCCCHHH-H-----------HHHHHHHHHHHHHHHHhcCHHHH--HHHhCCCeeEEE--EEE
Q 045791 213 --P------AKAKVKREHPDLSFEQ-Q-----------TALCERESVNLSLVNLLTYPYVQ--RAVQDGTLALRG--GYY 268 (290)
Q Consensus 213 --p------a~~~~~~~~~~~~~~~-~-----------~~~~~~~nV~~qv~~L~~~p~v~--~~v~~g~L~V~G--~vY 268 (290)
. +......+.+..+|.+ | .+.+...|..+|.+|..++.+.. ..+.......++ -+.
T Consensus 160 ghs~cgGik~~m~~~~~~~~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~ 239 (276)
T KOG1578|consen 160 GHSLCGGIKGLMSFSLEAPSRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGF 239 (276)
T ss_pred ccccCCchhhcccccccCcchhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcc
Confidence 0 0000000111112221 1 11233457789999999888877 667777777777 667
Q ss_pred EccCCeEEEEe
Q 045791 269 DFVNGKFELWE 279 (290)
Q Consensus 269 Di~TG~v~~~~ 279 (290)
+.-.|..+.++
T Consensus 240 l~~~G~~Y~fs 250 (276)
T KOG1578|consen 240 LQVHGGYYNFS 250 (276)
T ss_pred eeeeeeeEEec
Confidence 77777665543
No 17
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=65.73 E-value=12 Score=40.40 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=30.1
Q ss_pred HHHhcCHHHHHHHhCCC------eeEEEEEEEccCCeEEEEeccC
Q 045791 244 VNLLTYPYVQRAVQDGT------LALRGGYYDFVNGKFELWELKT 282 (290)
Q Consensus 244 ~~L~~~p~v~~~v~~g~------L~V~G~vYDi~TG~v~~~~~~~ 282 (290)
..|...|-||+.+++.. -..+|+..|..|-+|++++.+.
T Consensus 539 A~llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~ 583 (788)
T PF10070_consen 539 AALLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDL 583 (788)
T ss_pred HHHhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCC
Confidence 34556677777777653 4568999999999999998775
No 18
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=55.39 E-value=9.7 Score=30.09 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=17.1
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|+||+++..+|.|+.+
T Consensus 29 ~lgl~G~V~N~~DGsVeiv 47 (92)
T COG1254 29 RLGLTGWVKNLDDGSVEIV 47 (92)
T ss_pred HCCCEEEEEECCCCeEEEE
Confidence 4789999999999999876
No 19
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=38.94 E-value=55 Score=27.46 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=35.0
Q ss_pred CChhhHHhhhcCCCCcEEEEEecCCCCChhhhcCCCCCcEEEEEccCCcCCCCCccccchhhHHHHHHHHhcC
Q 045791 100 KYPECFSELAKGQHPKFLVFACSDSRVSPSHVLDFQPGEAFMARNIANMVPAFNQLRYSCVGATIEYAVANLQ 172 (290)
Q Consensus 100 ~~p~~~~~La~gQ~P~~lvItCsDSRV~pe~if~~~pGdlFVvRNaGN~V~~~d~~~~~~~~aSLEyAv~~L~ 172 (290)
-+|.+|++....+=| ++|+.|.+..+..+.. ..+++-.++ .||+ ||+||++.+.
T Consensus 59 IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d~v--~Gdv--------------sl~~ALe~ia 112 (130)
T TIGR02742 59 IDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYDVV--YGNV--------------SLKGALEKMA 112 (130)
T ss_pred EChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCeeEE--Eecc--------------cHHHHHHHHH
Confidence 489999988777777 5888888875555432 344444333 3554 5788877654
No 20
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=37.73 E-value=11 Score=28.64 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=13.1
Q ss_pred eEEEEEEEccCCeEEE
Q 045791 262 ALRGGYYDFVNGKFEL 277 (290)
Q Consensus 262 ~V~G~vYDi~TG~v~~ 277 (290)
..|||.||+.||++..
T Consensus 65 p~Hg~~Fd~~tG~~~~ 80 (97)
T PF00355_consen 65 PCHGWRFDLDTGECVG 80 (97)
T ss_dssp TTTTEEEETTTSBEEE
T ss_pred CCcCCEEeCCCceEec
Confidence 3599999999998743
No 21
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=37.66 E-value=1.1e+02 Score=28.06 Aligned_cols=74 Identities=11% Similarity=0.032 Sum_probs=43.1
Q ss_pred ChhhHHhhhcCCCCcEEEEEecCCCC----ChhhhcCCCC-CcEEEEEccCCcCCCCCccccchhhHHHHHHHHhcCCcE
Q 045791 101 YPECFSELAKGQHPKFLVFACSDSRV----SPSHVLDFQP-GEAFMARNIANMVPAFNQLRYSCVGATIEYAVANLQVEN 175 (290)
Q Consensus 101 ~p~~~~~La~gQ~P~~lvItCsDSRV----~pe~if~~~p-GdlFVvRNaGN~V~~~d~~~~~~~~aSLEyAv~~L~V~~ 175 (290)
.++.+++++..++|+=++.-|...+. +.+.++.... +-++++= |+-.|. -+++|-=.+..+|++.
T Consensus 54 ~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd---~v~dp~-------NlGai~Rta~a~G~~~ 123 (244)
T PRK11181 54 NRQTLDEKAEGAVHQGIIARVKPGRQLQENDLPDLLASLEQPFLLILD---GVTDPH-------NLGACLRSADAAGVHA 123 (244)
T ss_pred CHHHHhhhhcCCCCceEEEEEecccccchhhHHHHHhcCCCCEEEEEc---CCCCcc-------hHHHHHHHHHHcCCCE
Confidence 45667788887778776666664442 2334443222 2233332 222221 2356666888899999
Q ss_pred EEEEccCCc
Q 045791 176 VLVIGHSRC 184 (290)
Q Consensus 176 IVV~GHt~C 184 (290)
|++.+++.+
T Consensus 124 vi~~~~~~~ 132 (244)
T PRK11181 124 VIVPKDRSA 132 (244)
T ss_pred EEECCCCCC
Confidence 999888744
No 22
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=35.41 E-value=21 Score=30.58 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=13.9
Q ss_pred CCcEEEEEccCCchhhH
Q 045791 172 QVENVLVIGHSRCGGIK 188 (290)
Q Consensus 172 ~V~~IVV~GHt~CGav~ 188 (290)
.+.+|.|+||.+||=.+
T Consensus 2 ~~~~I~i~G~~~sGKTT 18 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTT 18 (188)
T ss_dssp TEEEEEEEESTTSSHHH
T ss_pred CEEEEEEECCCCCCcEe
Confidence 35789999999999643
No 23
>PRK14432 acylphosphatase; Provisional
Probab=34.84 E-value=46 Score=26.09 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=17.1
Q ss_pred CeeEEEEEEEccCCeEEEEe
Q 045791 260 TLALRGGYYDFVNGKFELWE 279 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~~ 279 (290)
++.|.||+.+..+|.|+.+-
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~ 46 (93)
T PRK14432 27 NMKLKGFVKNLNDGRVEIVA 46 (93)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 47799999999999988753
No 24
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=32.88 E-value=1.1e+02 Score=31.14 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=36.0
Q ss_pred CCccccChhhhhhhh-cccccccceeEEEEEEEEEeech------hHHHHHHHhhhHHHHHHHHH
Q 045791 5 SSPEVLNPGMKKLLR-FNFSAQLNYSIHIISYHIIYMHA------KSLRTRLLKTCKAIELVRMM 62 (290)
Q Consensus 5 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l 62 (290)
++||.+--|+++|+. +|.. ---+|-+.|++.+++. +.+|+-+.-++..++.+..+
T Consensus 321 ~~i~~v~~a~~~L~~~~~le---ri~vHT~~y~l~i~~~~~p~~~~~~~~aL~f~~~~Aa~rA~~ 382 (463)
T PRK03979 321 SRIEDVIEGAKILLDELNLE---RVQVHTLYYIMYICKKDNPLSEEELRKSLEFATILAATKAKL 382 (463)
T ss_pred ccHHHHHHHHHHHHHHcCCC---EEEEEecceeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 457777788888876 3322 3668889999988754 66766655555444444443
No 25
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=32.50 E-value=2.4e+02 Score=23.36 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=63.0
Q ss_pred hhcCCCCcEEEEEecCCCCChhhhcCCCCCcEEEEEccCCcCCCCCccccchhhHHHHHHHHhcCCcEEEEEccCCchhh
Q 045791 108 LAKGQHPKFLVFACSDSRVSPSHVLDFQPGEAFMARNIANMVPAFNQLRYSCVGATIEYAVANLQVENVLVIGHSRCGGI 187 (290)
Q Consensus 108 La~gQ~P~~lvItCsDSRV~pe~if~~~pGdlFVvRNaGN~V~~~d~~~~~~~~aSLEyAv~~L~V~~IVV~GHt~CGav 187 (290)
+..|-.|++.++-+==-|-+...... .....+.++|..+.+.. .+..+|..|+..-+--.|+|-|-.|==++
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~-------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE-------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH-------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 45678899999988777877654444 56678999999999976 36678899987877789999999999888
Q ss_pred HHhhcCCC
Q 045791 188 KRLMSLPD 195 (290)
Q Consensus 188 ~aa~~~~~ 195 (290)
-+.+..+.
T Consensus 78 Pail~aP~ 85 (121)
T PF04019_consen 78 PAILYAPE 85 (121)
T ss_pred HHHHhCCC
Confidence 87765543
No 26
>PRK14423 acylphosphatase; Provisional
Probab=32.01 E-value=66 Score=25.04 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=16.8
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+.++.+|.|+.+
T Consensus 30 ~lgl~G~V~N~~dG~Vei~ 48 (92)
T PRK14423 30 ELGVDGWVRNLDDGRVEAV 48 (92)
T ss_pred HcCCEEEEEECCCCeEEEE
Confidence 5789999999999998765
No 27
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=31.22 E-value=66 Score=24.32 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=20.7
Q ss_pred CeeEEEEEEEccC--CeEEEEeccCCCC
Q 045791 260 TLALRGGYYDFVN--GKFELWELKTDIT 285 (290)
Q Consensus 260 ~L~V~G~vYDi~T--G~v~~~~~~~~~~ 285 (290)
++.|+||++.+.. |++.|+++..+-+
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g 28 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNG 28 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCC
Confidence 3689999999997 6899988866443
No 28
>PRK14440 acylphosphatase; Provisional
Probab=31.17 E-value=61 Score=25.22 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=16.5
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+.+..+|.|+.+
T Consensus 28 ~~gl~G~V~N~~dG~Vei~ 46 (90)
T PRK14440 28 RLGIKGYAKNLPDGSVEVV 46 (90)
T ss_pred HcCCEEEEEECCCCCEEEE
Confidence 4779999999999998764
No 29
>PRK14430 acylphosphatase; Provisional
Probab=31.16 E-value=58 Score=25.46 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=16.4
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+.+..+|.|+.+
T Consensus 29 ~lgl~G~VrN~~dGsVei~ 47 (92)
T PRK14430 29 DLGLGGWVRNRADGTVEVM 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 4779999999999998754
No 30
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=31.07 E-value=19 Score=27.54 Aligned_cols=16 Identities=38% Similarity=0.621 Sum_probs=13.3
Q ss_pred eeEEEEEEEccCCeEE
Q 045791 261 LALRGGYYDFVNGKFE 276 (290)
Q Consensus 261 L~V~G~vYDi~TG~v~ 276 (290)
-..|||.||++||++.
T Consensus 60 Cp~Hg~~fd~~~G~~~ 75 (98)
T cd03528 60 CPLHGGRFDLRTGKAL 75 (98)
T ss_pred eCCcCCEEECCCCccc
Confidence 3469999999999864
No 31
>PRK11440 putative hydrolase; Provisional
Probab=31.03 E-value=95 Score=26.73 Aligned_cols=48 Identities=10% Similarity=0.163 Sum_probs=32.4
Q ss_pred cCCCCCcEEEEEccCCcCCCCCccccchhhHHHHHHHHhcCCcEEEEEccCCchhhHH
Q 045791 132 LDFQPGEAFMARNIANMVPAFNQLRYSCVGATIEYAVANLQVENVLVIGHSRCGGIKR 189 (290)
Q Consensus 132 f~~~pGdlFVvRNaGN~V~~~d~~~~~~~~aSLEyAv~~L~V~~IVV~GHt~CGav~a 189 (290)
+...+||.++.++--+-+.. ..|+.-+...|+++++|||=+-..-|.+
T Consensus 90 l~~~~~d~vi~K~~~saF~~----------T~L~~~L~~~gi~~lii~Gv~T~~CV~~ 137 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYG----------TDLELQLRRRGIDTIVLCGISTNIGVES 137 (188)
T ss_pred cCCCCCCEEEecCCcCCCCC----------CCHHHHHHHCCCCEEEEeeechhHHHHH
Confidence 45667898777765444322 1366667889999999999665555443
No 32
>PRK14445 acylphosphatase; Provisional
Probab=30.92 E-value=72 Score=24.76 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=16.6
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+.+..+|.|+..
T Consensus 29 ~~gl~G~V~N~~dG~Vei~ 47 (91)
T PRK14445 29 ELNLSGWVRNLPDGTVEIE 47 (91)
T ss_pred hCCCEEEEEECCCCeEEEE
Confidence 5789999999999998754
No 33
>PF08184 Cuticle_2: Cuticle protein 7 isoform family; InterPro: IPR012540 This family consists of cuticle protein 7 isoforms that are isolated from the carapace cuticle of a juvenile horseshoe crab, Limulus polyphemus. There are 3 isoforms of cuticle protein 7. The 3 isoforms are N-terminally blocked but could be deblocked by treatment with pyroglutaminase, showing that the N-terminal residue is a pyroglutamine residue [].; GO: 0042302 structural constituent of cuticle
Probab=29.72 E-value=26 Score=24.65 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=11.0
Q ss_pred EEEEEEccCCeEE
Q 045791 264 RGGYYDFVNGKFE 276 (290)
Q Consensus 264 ~G~vYDi~TG~v~ 276 (290)
-|..|||+||.|.
T Consensus 7 ngytydietgqvs 19 (59)
T PF08184_consen 7 NGYTYDIETGQVS 19 (59)
T ss_pred CCcEEEeccceec
Confidence 4889999999874
No 34
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=29.37 E-value=33 Score=29.36 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=12.7
Q ss_pred CcEEEEEccCCchh
Q 045791 173 VENVLVIGHSRCGG 186 (290)
Q Consensus 173 V~~IVV~GHt~CGa 186 (290)
+++|+++||++||=
T Consensus 2 ~r~i~ivG~~~~GK 15 (194)
T cd01891 2 IRNIAIIAHVDHGK 15 (194)
T ss_pred ccEEEEEecCCCCH
Confidence 68999999999994
No 35
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=29.31 E-value=63 Score=23.43 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.9
Q ss_pred HHHHHhcCHHHHHHHhCCCeeEEEE
Q 045791 242 SLVNLLTYPYVQRAVQDGTLALRGG 266 (290)
Q Consensus 242 qv~~L~~~p~v~~~v~~g~L~V~G~ 266 (290)
-|..|..+|-+-+.+++|++.+.|.
T Consensus 5 iV~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHHChHHHHHHHcCCeeEecC
Confidence 3677889999999999999999885
No 36
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=29.05 E-value=18 Score=27.64 Aligned_cols=15 Identities=20% Similarity=0.585 Sum_probs=12.8
Q ss_pred eEEEEEEEccCCeEE
Q 045791 262 ALRGGYYDFVNGKFE 276 (290)
Q Consensus 262 ~V~G~vYDi~TG~v~ 276 (290)
..|||.||+.||++.
T Consensus 60 P~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 60 PWHGACFNLRTGDIE 74 (95)
T ss_pred CCCCCEEECCCCcCc
Confidence 469999999999864
No 37
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=28.35 E-value=1.6e+02 Score=29.93 Aligned_cols=53 Identities=28% Similarity=0.289 Sum_probs=35.1
Q ss_pred CCccccChhhhhhhhcccccccc---eeEEEEEEEEEeec------hhHHHHHHHhhhHHHHHHHHH
Q 045791 5 SSPEVLNPGMKKLLRFNFSAQLN---YSIHIISYHIIYMH------AKSLRTRLLKTCKAIELVRMM 62 (290)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l 62 (290)
+++|.+--|+++|+. ++| --+|-+.|++.+++ ++.+|+-+.-++..++.+..+
T Consensus 307 ~~i~~vi~a~~~l~~-----~~~leri~vHT~~y~l~i~~~~~p~~~~~~~~aL~f~~~~Aa~rA~~ 368 (446)
T TIGR02045 307 NRIEDLILGAKILLD-----ELNLEVVQVHTIYYIMYITHADNPLSEEELRRSLEFSTILAATRASL 368 (446)
T ss_pred ccHHHHHHHHHHHHH-----HcCCCEEEEEecceeEEEeccCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 456667778888876 333 56899999999985 367766655555444444444
No 38
>PRK14429 acylphosphatase; Provisional
Probab=28.13 E-value=79 Score=24.47 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=16.4
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+.+..+|.|+.+
T Consensus 27 ~~gl~G~V~N~~dG~Vei~ 45 (90)
T PRK14429 27 ALGVTGYVTNCEDGSVEIL 45 (90)
T ss_pred HhCCEEEEEECCCCeEEEE
Confidence 4779999999999988754
No 39
>PRK14434 acylphosphatase; Provisional
Probab=27.98 E-value=85 Score=24.52 Aligned_cols=19 Identities=16% Similarity=0.417 Sum_probs=16.4
Q ss_pred Cee-EEEEEEEccCCeEEEE
Q 045791 260 TLA-LRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~-V~G~vYDi~TG~v~~~ 278 (290)
++. |.||+.+..+|.|+..
T Consensus 27 ~lg~l~G~V~N~~dGsVei~ 46 (92)
T PRK14434 27 EIGDIYGRVWNNDDGTVEIL 46 (92)
T ss_pred HcCCcEEEEEECCCCCEEEE
Confidence 577 9999999999988754
No 40
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=27.59 E-value=95 Score=31.23 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=30.4
Q ss_pred HhhhhhccccCC---CCCchHHHHHHHHHHhhHhccCCCChhhHHhhhcCCCCcEEEEEecCC
Q 045791 65 KGEADKEVDGHG---HDCFDPVERIIKGFIHFKTSKFDKYPECFSELAKGQHPKFLVFACSDS 124 (290)
Q Consensus 65 ~~~~~~~~~~~~---~~p~~~l~~Ll~GN~rf~~~~~~~~p~~~~~La~gQ~P~~lvItCsDS 124 (290)
-.++..|+.... ++++..=.-=.++..+|..+.+.--..+.+=|.....|.++-|+|.|=
T Consensus 316 fD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Di 378 (429)
T cd00256 316 FDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDI 378 (429)
T ss_pred HHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhH
Confidence 334444555432 344433333345555665544321111222234567899999999984
No 41
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=27.04 E-value=26 Score=27.41 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=12.9
Q ss_pred eEEEEEEEccCCeEE
Q 045791 262 ALRGGYYDFVNGKFE 276 (290)
Q Consensus 262 ~V~G~vYDi~TG~v~ 276 (290)
..|||.||+.||+..
T Consensus 63 P~Hg~~Fdl~tG~~~ 77 (101)
T TIGR02377 63 PKHAGCFDYRTGEAL 77 (101)
T ss_pred CccCCEEECCCCccc
Confidence 479999999999863
No 42
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=26.84 E-value=25 Score=32.28 Aligned_cols=43 Identities=12% Similarity=0.089 Sum_probs=34.1
Q ss_pred HHHHHHhc-CHHHHHHHhCCCeeEEEEEEEccCCeEEEEeccCCC
Q 045791 241 LSLVNLLT-YPYVQRAVQDGTLALRGGYYDFVNGKFELWELKTDI 284 (290)
Q Consensus 241 ~qv~~L~~-~p~v~~~v~~g~L~V~G~vYDi~TG~v~~~~~~~~~ 284 (290)
.|-..|++ -|.-++.|+..+ .|+=.|||.+||+.+++.-|++|
T Consensus 149 eqksr~~am~PmTkEEyearQ-SvIRrVvDpETGRtRLIkGdGEi 192 (225)
T PF10500_consen 149 EQKSRIQAMAPMTKEEYEARQ-SVIRRVVDPETGRTRLIKGDGEI 192 (225)
T ss_pred chhhhhhhcCCCCHHHHHHHH-hhheeeecCCCCceeeecccchH
Confidence 45556665 588888888755 57789999999999999888876
No 43
>PRK14448 acylphosphatase; Provisional
Probab=26.63 E-value=76 Score=24.61 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=16.4
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+.+..+|.|+.+
T Consensus 27 ~lgl~G~V~N~~dG~Vei~ 45 (90)
T PRK14448 27 KIGIKGYVKNRPDGSVEVV 45 (90)
T ss_pred HhCCEEEEEECCCCCEEEE
Confidence 4779999999999998764
No 44
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=26.57 E-value=32 Score=28.46 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=14.8
Q ss_pred eeEEEEEEEccCCeEEEE
Q 045791 261 LALRGGYYDFVNGKFELW 278 (290)
Q Consensus 261 L~V~G~vYDi~TG~v~~~ 278 (290)
-..|||-||+.||++..+
T Consensus 76 Cp~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 76 CWYHGWTYRLDDGKLVTI 93 (136)
T ss_pred ecCCccEEeCCCccEEEc
Confidence 346999999999998654
No 45
>PRK14441 acylphosphatase; Provisional
Probab=26.50 E-value=1e+02 Score=24.08 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=16.8
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+-+..+|.|+.+
T Consensus 30 ~lgL~G~V~N~~dG~Vei~ 48 (93)
T PRK14441 30 RLGVEGWVRNLPDGRVEAE 48 (93)
T ss_pred hcCcEEEEEECCCCEEEEE
Confidence 5889999999999998754
No 46
>PRK14449 acylphosphatase; Provisional
Probab=26.09 E-value=92 Score=24.07 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=16.5
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+.+..+|.|+.+
T Consensus 28 ~lgl~G~V~N~~dG~Vei~ 46 (90)
T PRK14449 28 SLGITGYAENLYDGSVEVV 46 (90)
T ss_pred HcCCEEEEEECCCCeEEEE
Confidence 4779999999999998764
No 47
>PRK14451 acylphosphatase; Provisional
Probab=26.06 E-value=81 Score=24.44 Aligned_cols=19 Identities=21% Similarity=0.516 Sum_probs=16.6
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+-+..+|.|+..
T Consensus 28 ~~gl~G~V~N~~dG~Vei~ 46 (89)
T PRK14451 28 QLMISGWARNLADGRVEVF 46 (89)
T ss_pred HhCCEEEEEECCCCCEEEE
Confidence 4779999999999998764
No 48
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=25.46 E-value=25 Score=27.42 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=12.7
Q ss_pred eEEEEEEEccCCeEE
Q 045791 262 ALRGGYYDFVNGKFE 276 (290)
Q Consensus 262 ~V~G~vYDi~TG~v~ 276 (290)
..|||.||++||+..
T Consensus 68 p~Hg~~Fdl~tG~~~ 82 (105)
T TIGR02378 68 PLHKRNFRLEDGRCL 82 (105)
T ss_pred CcCCCEEEcCCcccc
Confidence 469999999999853
No 49
>PRK14436 acylphosphatase; Provisional
Probab=25.44 E-value=95 Score=24.15 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.5
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+.+..+|.|+.+
T Consensus 29 ~l~l~G~V~N~~dG~Vei~ 47 (91)
T PRK14436 29 KLGVNGWVRNLPDGSVEAV 47 (91)
T ss_pred HcCCEEEEEECCCCcEEEE
Confidence 4779999999999998764
No 50
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=25.07 E-value=38 Score=28.02 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=11.9
Q ss_pred cEEEEEccCCchhh
Q 045791 174 ENVLVIGHSRCGGI 187 (290)
Q Consensus 174 ~~IVV~GHt~CGav 187 (290)
++|+++||++||=-
T Consensus 1 rni~~vG~~~~GKs 14 (179)
T cd01890 1 RNFSIIAHIDHGKS 14 (179)
T ss_pred CcEEEEeecCCCHH
Confidence 57999999999943
No 51
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=25.05 E-value=26 Score=27.40 Aligned_cols=15 Identities=13% Similarity=0.230 Sum_probs=12.8
Q ss_pred eEEEEEEEccCCeEE
Q 045791 262 ALRGGYYDFVNGKFE 276 (290)
Q Consensus 262 ~V~G~vYDi~TG~v~ 276 (290)
..|||.||+.||+..
T Consensus 67 p~Hg~~Fdl~tG~~~ 81 (103)
T cd03529 67 PLYKQHFSLKTGRCL 81 (103)
T ss_pred CCCCCEEEcCCCCcc
Confidence 469999999999863
No 52
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=24.75 E-value=93 Score=23.76 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=14.4
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+.+..+|.|+.+
T Consensus 29 ~~gl~G~V~N~~dg~V~i~ 47 (91)
T PF00708_consen 29 KLGLTGWVRNLPDGSVEIE 47 (91)
T ss_dssp HTT-EEEEEE-TTSEEEEE
T ss_pred HhCCceEEEECCCCEEEEE
Confidence 4669999999999998765
No 53
>PRK14426 acylphosphatase; Provisional
Probab=24.71 E-value=94 Score=24.16 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=16.4
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+.+..+|.|+.+
T Consensus 29 ~~gl~G~V~N~~dG~Vei~ 47 (92)
T PRK14426 29 KLGLTGYAKNLDDGSVEVV 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 4789999999999988754
No 54
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=24.37 E-value=25 Score=28.62 Aligned_cols=16 Identities=13% Similarity=-0.016 Sum_probs=13.7
Q ss_pred eeEEEEEEEccCCeEE
Q 045791 261 LALRGGYYDFVNGKFE 276 (290)
Q Consensus 261 L~V~G~vYDi~TG~v~ 276 (290)
-..|||-||+.||+..
T Consensus 70 CP~Hg~~FDLrTG~~~ 85 (107)
T cd03473 70 CTKHNWKLDVSTMKYV 85 (107)
T ss_pred eCCCCCEEEcCCCCCc
Confidence 4579999999999974
No 55
>PRK14422 acylphosphatase; Provisional
Probab=23.97 E-value=96 Score=24.24 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=16.5
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+-+..+|.|+..
T Consensus 31 ~~gl~G~V~N~~dG~Vei~ 49 (93)
T PRK14422 31 ELGLTGYAANLADGRVQVV 49 (93)
T ss_pred HcCCEEEEEECCCCCEEEE
Confidence 4789999999999988754
No 56
>PRK14420 acylphosphatase; Provisional
Probab=23.95 E-value=1e+02 Score=23.76 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=16.3
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+.+..+|.|+..
T Consensus 27 ~~gl~G~V~N~~dG~Vei~ 45 (91)
T PRK14420 27 KRKLTGWVKNRDDGTVEIE 45 (91)
T ss_pred HcCCEEEEEECCCCcEEEE
Confidence 4679999999999988754
No 57
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.85 E-value=41 Score=31.37 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=13.7
Q ss_pred CCcEEEEEccCCchhhH
Q 045791 172 QVENVLVIGHSRCGGIK 188 (290)
Q Consensus 172 ~V~~IVV~GHt~CGav~ 188 (290)
.-+-|.|+|||+||=-+
T Consensus 28 ~GEfvsilGpSGcGKST 44 (248)
T COG1116 28 KGEFVAILGPSGCGKST 44 (248)
T ss_pred CCCEEEEECCCCCCHHH
Confidence 34788999999999644
No 58
>PRK14425 acylphosphatase; Provisional
Probab=23.68 E-value=1e+02 Score=24.08 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=16.5
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+.+..+|.|+.+
T Consensus 31 ~~gl~G~V~N~~dGsVei~ 49 (94)
T PRK14425 31 RLGLTGWVRNESDGSVTAL 49 (94)
T ss_pred HhCCEEEEEECCCCeEEEE
Confidence 4679999999999999865
No 59
>PRK14444 acylphosphatase; Provisional
Probab=23.46 E-value=1e+02 Score=24.02 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=16.3
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+-+..+|.|+..
T Consensus 29 ~lgl~G~V~N~~dG~Vei~ 47 (92)
T PRK14444 29 EAGVKGWVRNLSDGRVEAV 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 4789999999999988754
No 60
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=23.32 E-value=29 Score=27.70 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=12.9
Q ss_pred eeEEEEEEEccCCeE
Q 045791 261 LALRGGYYDFVNGKF 275 (290)
Q Consensus 261 L~V~G~vYDi~TG~v 275 (290)
-..|||.||+.||+.
T Consensus 70 CP~H~~~Fdl~TG~~ 84 (108)
T PRK09511 70 SPLKKQRFRLSDGLC 84 (108)
T ss_pred CCCCCCEEECCCccc
Confidence 347999999999986
No 61
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=23.31 E-value=34 Score=27.40 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=13.3
Q ss_pred eeEEEEEEEccCCeEE
Q 045791 261 LALRGGYYDFVNGKFE 276 (290)
Q Consensus 261 L~V~G~vYDi~TG~v~ 276 (290)
-..||+.||+.||+..
T Consensus 66 Cp~H~a~Fdl~tG~~~ 81 (106)
T COG2146 66 CPLHGARFDLRTGECL 81 (106)
T ss_pred CCccCCEEEcCCCcee
Confidence 3479999999999863
No 62
>PRK14446 acylphosphatase; Provisional
Probab=22.79 E-value=1.2e+02 Score=23.59 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=16.9
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+-+..+|.|+..
T Consensus 27 ~lgl~G~V~N~~dGsVei~ 45 (88)
T PRK14446 27 ALGLVGHARNQADGSVEVV 45 (88)
T ss_pred eCCeEEEEEECCCCCEEEE
Confidence 6889999999999998764
No 63
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=22.33 E-value=33 Score=26.99 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=12.8
Q ss_pred eEEEEEEEccCCeEE
Q 045791 262 ALRGGYYDFVNGKFE 276 (290)
Q Consensus 262 ~V~G~vYDi~TG~v~ 276 (290)
..|||.||+.||+..
T Consensus 63 p~Hg~~Fd~~tG~~~ 77 (106)
T PRK09965 63 PLHAASFCLRTGKAL 77 (106)
T ss_pred CCCCCEEEcCCCCee
Confidence 469999999999863
No 64
>PF01707 Peptidase_C9: Peptidase family C9; InterPro: IPR002620 The family of alphaviruses includes 26 known members. They infect a variety of hosts including mosquitoes, birds, rodents and other mammals with worldwide distribution. Alphaviruses also pose a potential threat to human health in many area. For example, Venezuelan Equine Encephalitis Virus (VEEV) causes encephalitis in humans as well as livestock in Central and South America, and some variants of Sinbis Virus (SIN) and Semliki Forest Virus (SFV) have been found to cause fever and arthritis in humans []. Alphaviruses possess a single-stranded RNA genome of approximately 12 kb. The genomic RNA of alphaviruses is translated into two polyproteins that, respectively, encode structural proteins and nonstructural proteins. The nonstructural proteins may be translated as one or two polyproteins, nsp123 or nsp1234, depending on the virus. These polyproteins are cleaved to generate nsp1, nsp2, nsp3 and nsp4 by a protease activity that resides within nsp2 []. The nsp2 protein of alphaviruses has multiple enzymatic acivities. Its N-terminal domain has been shown to possess ATPase and GTPase activity, RNA helicase activity and RNA 5'-triphosphatase activity []. The C-terminal nsp2pro domain of nsp2 is responsible for the regulation of 26S subgenome RNA synthesis, switching between negative- and positive-strand RNA synthesis, targeting nsp2 for nuclear transport and proteolytic processing of the nonstructural polyprotein [, ]. The nsp2pro domain is a member of peptidase family C9 of clan CA. The nsp2pro domain consists of two distinct subdomains. The nsp2pro N-terminal subdomain is largely alpha-helical and contains the catalytic dyad cysteine and histidine residues organised in a protein fold that differs significantly from any known cysteine protease or protein folds. The nsp2pro C-terminal subdomain displays structural similarity to S-adenosyl- L-methionine-dependent RNA methyltransferases and provides essential elements that contribute to substrate recognition and may also regulate the structure of the substrate binding cleft []. This entry represents the nsp2pro domain.; PDB: 3TRK_A 2HWK_A.
Probab=22.20 E-value=27 Score=31.37 Aligned_cols=36 Identities=19% Similarity=0.499 Sum_probs=23.8
Q ss_pred HHH-hcCHHHHHHHhCCCeeEEEEEEEccCCeEEEEeccCCCC
Q 045791 244 VNL-LTYPYVQRAVQDGTLALRGGYYDFVNGKFELWELKTDIT 285 (290)
Q Consensus 244 ~~L-~~~p~v~~~v~~g~L~V~G~vYDi~TG~v~~~~~~~~~~ 285 (290)
+.| ++||+++.+++. |-.+|+.||+++.++...++=
T Consensus 138 ~~l~~r~P~l~~a~~~------g~q~dv~~g~~~~~~~~~N~V 174 (202)
T PF01707_consen 138 RELERRYPFLRKAWKT------GRQLDVSTGRLQPYSPTCNLV 174 (202)
T ss_dssp HHHHCC-CCHCCHCCC------T-EEETTTTCEES--TTS--S
T ss_pred HHHHHhCchhhhcccc------CeeEeecCCceecCCCccccc
Confidence 344 689999988775 668999999998877666553
No 65
>PRK14433 acylphosphatase; Provisional
Probab=22.18 E-value=1.1e+02 Score=23.56 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.5
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+.++.+|.|+.+
T Consensus 26 ~~~l~G~V~N~~dG~Vei~ 44 (87)
T PRK14433 26 ELGLSGYAENLSDGRVEVV 44 (87)
T ss_pred HcCCEEEEEECCCCCEEEE
Confidence 4779999999999988765
No 66
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=21.82 E-value=2.5e+02 Score=23.20 Aligned_cols=45 Identities=11% Similarity=0.199 Sum_probs=34.4
Q ss_pred CCcEEEEEccCCcCCCCCccccchhhHHHHHHHHhcCCcEEEEEccCCchhhHHh
Q 045791 136 PGEAFMARNIANMVPAFNQLRYSCVGATIEYAVANLQVENVLVIGHSRCGGIKRL 190 (290)
Q Consensus 136 pGdlFVvRNaGN~V~~~d~~~~~~~~aSLEyAv~~L~V~~IVV~GHt~CGav~aa 190 (290)
+||..+.|+--|..... .|+.-+...|+++|+|+|=.-.+-|.++
T Consensus 85 ~~~~vi~K~~~saf~~t----------~L~~~L~~~gi~~vil~G~~t~~CV~~T 129 (174)
T PF00857_consen 85 PGDPVIEKNRYSAFFGT----------DLDEILRKRGIDTVILCGVATDVCVLAT 129 (174)
T ss_dssp TTSEEEEESSSSTTTTS----------SHHHHHHHTTESEEEEEEESTTTHHHHH
T ss_pred cccceEEeecccccccc----------cccccccccccceEEEcccccCcEEehh
Confidence 39999999866666332 3566688899999999998877777654
No 67
>PRK14437 acylphosphatase; Provisional
Probab=21.74 E-value=1e+02 Score=24.94 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=16.5
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+.+..+|.|+.+
T Consensus 48 ~lgL~G~V~N~~dG~Vei~ 66 (109)
T PRK14437 48 ELQLTGWVKNLSHGDVELV 66 (109)
T ss_pred HhCCeEEEEECCCCCEEEE
Confidence 4779999999999998765
No 68
>PRK14421 acylphosphatase; Provisional
Probab=21.00 E-value=1.2e+02 Score=24.07 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=16.4
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+-+..+|.|+..
T Consensus 29 ~lgL~G~V~N~~dG~Vei~ 47 (99)
T PRK14421 29 ALGLEGWVRNRRDGSVEAL 47 (99)
T ss_pred HhCCEEEEEECCCCEEEEE
Confidence 4779999999999998754
No 69
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=20.96 E-value=39 Score=26.42 Aligned_cols=15 Identities=13% Similarity=-0.111 Sum_probs=12.6
Q ss_pred eeEEEEEEEccCCeE
Q 045791 261 LALRGGYYDFVNGKF 275 (290)
Q Consensus 261 L~V~G~vYDi~TG~v 275 (290)
-..|||.||++||..
T Consensus 61 CP~Hg~~Fdl~~G~~ 75 (108)
T cd03474 61 CRAHLWQFDADTGEG 75 (108)
T ss_pred eCCcCCEEECCCccc
Confidence 346999999999975
No 70
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=20.88 E-value=31 Score=26.47 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=12.2
Q ss_pred eEEEEEEEccCCeE
Q 045791 262 ALRGGYYDFVNGKF 275 (290)
Q Consensus 262 ~V~G~vYDi~TG~v 275 (290)
..|||.||+.||.+
T Consensus 62 p~Hg~~Fdl~~G~~ 75 (98)
T cd03530 62 PLHNWVIDLETGEA 75 (98)
T ss_pred CCCCCEEECCCCCC
Confidence 46999999999975
No 71
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=20.76 E-value=52 Score=28.78 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=12.3
Q ss_pred cEEEEEccCCchhhH
Q 045791 174 ENVLVIGHSRCGGIK 188 (290)
Q Consensus 174 ~~IVV~GHt~CGav~ 188 (290)
++|+|+||.++|=..
T Consensus 1 rnv~iiG~~~~GKTt 15 (213)
T cd04167 1 RNVAIAGHLHHGKTS 15 (213)
T ss_pred CcEEEEcCCCCCHHH
Confidence 479999999999543
No 72
>PRK14438 acylphosphatase; Provisional
Probab=20.73 E-value=1.4e+02 Score=23.21 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=16.4
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+-+..+|.|+.+
T Consensus 28 ~~gl~G~V~N~~dG~Vei~ 46 (91)
T PRK14438 28 RLNVSGWVKNLPNGSVQGC 46 (91)
T ss_pred HcCCEEEEEECCCCEEEEE
Confidence 4779999999999998754
No 73
>PRK14427 acylphosphatase; Provisional
Probab=20.55 E-value=1.4e+02 Score=23.30 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.6
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+-+..+|.|+.+
T Consensus 31 ~lgl~G~V~N~~dGsVei~ 49 (94)
T PRK14427 31 ELGLTGTVRNLDDGSVALV 49 (94)
T ss_pred HcCCEEEEEECCCCeEEEE
Confidence 5789999999999998764
No 74
>PRK14443 acylphosphatase; Provisional
Probab=20.47 E-value=1.4e+02 Score=23.44 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=16.8
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+-++.+|.|+.+
T Consensus 29 ~~gl~G~V~N~~dG~Vei~ 47 (93)
T PRK14443 29 KYDISGTVKNLDDGSVEIH 47 (93)
T ss_pred HcCCEEEEEECCCCEEEEE
Confidence 4789999999999999865
No 75
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=20.46 E-value=64 Score=27.64 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=14.7
Q ss_pred cCCcEEEEEccCCchhhH
Q 045791 171 LQVENVLVIGHSRCGGIK 188 (290)
Q Consensus 171 L~V~~IVV~GHt~CGav~ 188 (290)
-++..|+|+|+++||=-.
T Consensus 39 ~~~~~I~iiG~~g~GKSt 56 (204)
T cd01878 39 SGIPTVALVGYTNAGKST 56 (204)
T ss_pred cCCCeEEEECCCCCCHHH
Confidence 446899999999999643
No 76
>PRK14424 acylphosphatase; Provisional
Probab=20.38 E-value=1.3e+02 Score=23.75 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.3
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+-++.+|.|+.+
T Consensus 32 ~~gl~G~V~N~~dG~Vei~ 50 (94)
T PRK14424 32 ALGLRGWVANLEDGTVEAM 50 (94)
T ss_pred HcCCeEEEEECCCCCEEEE
Confidence 4779999999999988765
No 77
>PRK14428 acylphosphatase; Provisional
Probab=20.30 E-value=1.4e+02 Score=23.68 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.6
Q ss_pred CeeEEEEEEEccCCeEEEE
Q 045791 260 TLALRGGYYDFVNGKFELW 278 (290)
Q Consensus 260 ~L~V~G~vYDi~TG~v~~~ 278 (290)
++.|.||+-+..+|.|+..
T Consensus 33 ~lgL~G~V~N~~dGsVei~ 51 (97)
T PRK14428 33 RLGVQGWVRNCRDGSVELE 51 (97)
T ss_pred HcCCEEEEEECCCCEEEEE
Confidence 4779999999999998765
Done!