BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045793
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DDG|A Chain A, Crystal Structure Of Sir-Fp60
 pdb|1DDG|B Chain B, Crystal Structure Of Sir-Fp60
 pdb|1DDI|A Chain A, Crystal Structure Of Sir-Fp60
          Length = 374

 Score = 29.6 bits (65), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 12  GAKSFPSDSEAEEGHVRVFVGKDMQFKF 39
           GA SF +D   EEG VRVF+  +  F+ 
Sbjct: 195 GASSFLADRVEEEGEVRVFIEHNDNFRL 222


>pdb|3K45|A Chain A, Alternate Binding Modes Observed For The E- And Z-Isomers
           Of 2,4- Diaminofuro[2,3d]pyrimidines As Ternary
           Complexes With Nadph And Mouse Dihydrofolate Reductase
          Length = 186

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 9   WCCGAKSFPSDSEAEEGHVRVFVGKDMQ 36
           W  G  S   ++  + GH+R+FV + MQ
Sbjct: 113 WIVGGSSVYQEAMNQPGHLRLFVTRIMQ 140


>pdb|2FZJ|A Chain A, New Insights Into Dhfr Interactions: Analysis Of
           Pneumocystis Carinii And Mouse Dhfr Complexes With Nadph
           And Two Highly Potent Trimethoprim Derivatives
 pdb|3D80|A Chain A, Structural Analysis Of A Holo Enzyme Complex Of Mouse
           Dihydrofolate Reductase With Nadph And A Ternary Complex
           Wtih The Potent And Selective Inhibitor
           2,4-Diamino-6-(2'-Hydroxydibenz[b,F]azepin-5-Yl)
           Methylpteridine
 pdb|3D84|X Chain X, Structural Analysis Of A Holo Enzyme Complex Of Mouse
           Dihydrofolate Reductase With Nadph And A Ternary Complex
           With The Potent And Selective Inhibitor
           2.4-Diamino-6-(-2'-Hydroxydibenz[b,F]azepin-5-
           Yl)methylpteridine
 pdb|3K47|A Chain A, Alternate Binding Modes Observed For The E- And Z-Isomers
           Of 2,4- Diaminofuro[2,3-D]pyrimidines As Ternary
           Complexes With Nadph And Mouse Dihydrofolate Reductase
          Length = 186

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 9   WCCGAKSFPSDSEAEEGHVRVFVGKDMQ 36
           W  G  S   ++  + GH+R+FV + MQ
Sbjct: 113 WIVGGSSVYQEAMNQPGHLRLFVTRIMQ 140


>pdb|1U70|A Chain A, Understanding The Role Of Leu22 Variants In Methotrexate
           Resistance: Comparison Of Wild-Type And Leu22arg Variant
           Mouse And Human Dihydrofolate Reductase
          Length = 186

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 9   WCCGAKSFPSDSEAEEGHVRVFVGKDMQ 36
           W  G  S   ++  + GH+R+FV + MQ
Sbjct: 113 WIVGGSSVYQEAMNQPGHLRLFVTRIMQ 140


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,050,278
Number of Sequences: 62578
Number of extensions: 107599
Number of successful extensions: 201
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 5
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)