BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045794
(578 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 529 bits (1362), Expect = e-150, Method: Compositional matrix adjust.
Identities = 278/549 (50%), Positives = 365/549 (66%), Gaps = 21/549 (3%)
Query: 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED--ILNANRLIFPGVGAFAAAMDVLNK 106
VV ++D +GN++S+ NAI HLG+ ++ V++P+D I +RLI PGVG + +D L
Sbjct: 6 VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFN 65
Query: 107 TGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQ 166
G + + YIE +P +GIC+GLQ LF S E+ GL I + RFD S VP+
Sbjct: 66 RGFEKPIREYIESGKPIMGICVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEK-PVPE 124
Query: 167 IGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKE------WVSSTCNYG-DNFIA 219
IGWN+ I ++ YFVHS+ A+ + + K+ W + YG + FIA
Sbjct: 125 IGWNSC-IPSENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIA 183
Query: 220 SVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTN-IPKKPTEGKAL--------KLAKRV 270
+V + N+ A QFHPEKSG GL+V+ FL ++ IP E K L L +R+
Sbjct: 184 AVNKNNIFATQFHPEKSGKAGLNVIENFLKQQSPPIPNYSAEEKELLMNDYSNYGLTRRI 243
Query: 271 IACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNIT 330
IACLDVR ND+GDLVVTKGDQYDVRE + VRNLGKPV+LA++YY++GADE++FLNIT
Sbjct: 244 IACLDVRTNDQGDLVVTKGDQYDVREKSDGKGVRNLGKPVQLAQKYYQQGADEVTFLNIT 303
Query: 331 GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390
FRD PL D PML+VL+ ++ VFVPLTVGGGI+D D +G +LEVAS YFRSGADK
Sbjct: 304 SFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADK 363
Query: 391 ISIGSDAVYAAEDYLKTGVK-TGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKA 449
+SIG+DAVYAAE Y + G + G S +E IS+ YG QAVV+S+DP+RVY+ D + K
Sbjct: 364 VSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKV 423
Query: 450 VRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF 509
GPNGE+Y WYQCT+ GGRE R +G +EL +A E LGAGEILLNCID DG G+
Sbjct: 424 FETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSGY 483
Query: 510 DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569
D++LI+ + DAV IPVIASSGAG EHF + F KT A A L AG+FHR E + VKE+L
Sbjct: 484 DLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYL 543
Query: 570 YKEGIEVRI 578
+ G++VR+
Sbjct: 544 LEHGLKVRM 552
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1OX4|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 525 bits (1351), Expect = e-149, Method: Compositional matrix adjust.
Identities = 277/549 (50%), Positives = 364/549 (66%), Gaps = 21/549 (3%)
Query: 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED--ILNANRLIFPGVGAFAAAMDVLNK 106
VV ++D +GN++S+ NAI HLG+ ++ V++P+D I +RLI PGVG + +D L
Sbjct: 6 VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFN 65
Query: 107 TGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQ 166
G + + YIE +P +GI +GLQ LF S E+ GL I + RFD S VP+
Sbjct: 66 RGFEKPIREYIESGKPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEK-PVPE 124
Query: 167 IGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKE------WVSSTCNYG-DNFIA 219
IGWN+ I ++ YFVHS+ A+ + + K+ W + YG + FIA
Sbjct: 125 IGWNSC-IPSENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIA 183
Query: 220 SVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTN-IPKKPTEGKAL--------KLAKRV 270
+V + N+ A QFHPEKSG GL+V+ FL ++ IP E K L L +R+
Sbjct: 184 AVNKNNIFATQFHPEKSGKAGLNVIENFLKQQSPPIPNYSAEEKELLMNDYSNYGLTRRI 243
Query: 271 IACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNIT 330
IACLDVR ND+GDLVVTKGDQYDVRE + VRNLGKPV+LA++YY++GADE++FLNIT
Sbjct: 244 IACLDVRTNDQGDLVVTKGDQYDVREKSDGKGVRNLGKPVQLAQKYYQQGADEVTFLNIT 303
Query: 331 GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390
FRD PL D PML+VL+ ++ VFVPLTVGGGI+D D +G +LEVAS YFRSGADK
Sbjct: 304 SFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADK 363
Query: 391 ISIGSDAVYAAEDYLKTGVK-TGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKA 449
+SIG+DAVYAAE Y + G + G S +E IS+ YG QAVV+S+DP+RVY+ D + K
Sbjct: 364 VSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKV 423
Query: 450 VRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF 509
GPNGE+Y WYQCT+ GGRE R +G +EL +A E LGAGEILLNCID DG G+
Sbjct: 424 FETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSGY 483
Query: 510 DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569
D++LI+ + DAV IPVIASSGAG EHF + F KT A A L AG+FHR E + VKE+L
Sbjct: 484 DLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYL 543
Query: 570 YKEGIEVRI 578
+ G++VR+
Sbjct: 544 LEHGLKVRM 552
>pdb|1H5Y|A Chain A, Hisf Protein From Pyrobaculum Aerophilum
pdb|1H5Y|B Chain B, Hisf Protein From Pyrobaculum Aerophilum
Length = 253
Score = 169 bits (427), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 168/313 (53%), Gaps = 62/313 (19%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
+A R+I CLD+ D G VV KG + +R +G PVE+A +Y +EGADEI+
Sbjct: 3 MALRIIPCLDI---DGGAKVVVKGVNF--------QGIREVGDPVEMAVRYEEEGADEIA 51
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
L+IT P G + ++ +E V +P+ VGGG+R SLE A+ FR
Sbjct: 52 ILDITAA---PEGRATFIDSVKRVAEAVSIPVLVGGGVR-----------SLEDATTLFR 97
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
+GADK+S+ + AV + ++R +G+Q+ VV+ID +
Sbjct: 98 AGADKVSVNTAAV------------RNPQLVALLAREFGSQSTVVAIDAKW--------- 136
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
NGE +Y+ V GGRE + A + AK VE+LGAGEILL ID DG
Sbjct: 137 ------------NGE---YYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGT 181
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G G+D++LI+ ++D+V IPVIAS GAG VEHF + + A+ +FH + + I V
Sbjct: 182 GLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAAS-LFHFRVLSIAQV 240
Query: 566 KEHLYKEGIEVRI 578
K +L + G+EVRI
Sbjct: 241 KRYLKERGVEVRI 253
>pdb|1KA9|F Chain F, Imidazole Glycerol Phosphate Synthase
Length = 252
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/315 (34%), Positives = 164/315 (52%), Gaps = 64/315 (20%)
Query: 264 LKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADE 323
+ LAKR++ CLDV A V KG + +R+ G PVE AR Y + GADE
Sbjct: 1 MSLAKRIVPCLDVHAGR-----VVKGVNF--------VNLRDAGDPVEAARAYDEAGADE 47
Query: 324 ISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383
+ FL+I+ + +L V+ +E VF+PLTVGGG+R SLE A +
Sbjct: 48 LVFLDISATHE---ERAILLDVVARVAERVFIPLTVGGGVR-----------SLEDARKL 93
Query: 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPN 443
SGADK+S+ S AV E + +++ +G QAVV++ID R
Sbjct: 94 LLSGADKVSVNSAAVRRPE------------LIRELADHFGAQAVVLAIDARW------- 134
Query: 444 DVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD 503
G+ + + V GGR + A E A +LGAGEILL +D D
Sbjct: 135 --------------RGD---FPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRD 177
Query: 504 GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQ 563
G +G+D+ L +++++AV +PVIAS GAG +EHF + F+ +A A+ +FH E+PI
Sbjct: 178 GTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAAS-VFHFGEIPIP 236
Query: 564 SVKEHLYKEGIEVRI 578
+K +L ++G+ VR+
Sbjct: 237 KLKRYLAEKGVHVRL 251
>pdb|2A0N|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate Synthase
Subunit Hisf (ec 4.1.3.-) (tm1036) From Thermotoga
Maritima At 1.64 A Resolution
Length = 265
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 160/313 (51%), Gaps = 64/313 (20%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR+IACLDV+ D V KG ++ +R+ G PVEL + Y + G DE+
Sbjct: 14 LAKRIIACLDVK-----DGRVVKGTNFE--------NLRDSGDPVELGKFYSEIGIDELV 60
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT + ML+++ +E + +P TVGGGI DF E ASE
Sbjct: 61 FLDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIHDF-----------ETASELIL 106
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
GADK+SI + AV S + QI++ +G+QAVVV+ID +RV
Sbjct: 107 RGADKVSINTAAV------------ENPSLITQIAQTFGSQAVVVAIDAKRV-------- 146
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+GE + G++ I + VE GAGEILL ID DG
Sbjct: 147 ------------DGE----FMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT 190
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D ++I+ + ++P+IAS GAG +EHF + F +A A+ +FH +E+ ++ +
Sbjct: 191 KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAAS-VFHFREIDVREL 249
Query: 566 KEHLYKEGIEVRI 578
KE+L K G+ VR+
Sbjct: 250 KEYLKKHGVNVRL 262
>pdb|1THF|D Chain D, Cyclase Subunit Of Imidazoleglycerolphosphate Synthase
From Thermotoga Maritima
Length = 253
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 160/313 (51%), Gaps = 64/313 (20%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR+IACLDV+ D V KG ++ +R+ G PVEL + Y + G DE+
Sbjct: 2 LAKRIIACLDVK-----DGRVVKGSNFE--------NLRDSGDPVELGKFYSEIGIDELV 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT + ML+++ +E + +P TVGGGI DF E ASE
Sbjct: 49 FLDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIHDF-----------ETASELIL 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
GADK+SI + AV S + QI++ +G+QAVVV+ID +RV
Sbjct: 95 RGADKVSINTAAV------------ENPSLITQIAQTFGSQAVVVAIDAKRV-------- 134
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+GE + G++ I + VE GAGEILL ID DG
Sbjct: 135 ------------DGE----FMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT 178
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D ++I+ + ++P+IAS GAG +EHF + F +A A+ +FH +E+ ++ +
Sbjct: 179 KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAAS-VFHFREIDVREL 237
Query: 566 KEHLYKEGIEVRI 578
KE+L K G+ VR+
Sbjct: 238 KEYLKKHGVNVRL 250
>pdb|2WJZ|A Chain A, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|C Chain C, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|E Chain E, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|3ZR4|A Chain A, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|C Chain C, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|E Chain E, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
Length = 253
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 160/313 (51%), Gaps = 64/313 (20%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR+IACLDV+ D V KG ++ +R+ G PVEL + Y + G DE+
Sbjct: 2 LAKRIIACLDVK-----DGRVVKGTNFE--------NLRDSGDPVELGKFYSEIGIDELV 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT + ML+++ +E + +P TVGGGI DF E ASE
Sbjct: 49 FLDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIHDF-----------ETASELIL 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
GADK+SI + AV S + QI++ +G+QAVVV+ID +RV
Sbjct: 95 RGADKVSINTAAV------------ENPSLITQIAQTFGSQAVVVAIDAKRV-------- 134
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+GE + G++ I + VE GAGEILL ID DG
Sbjct: 135 ------------DGE----FMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT 178
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D ++I+ + ++P+IAS GAG +EHF + F +A A+ +FH +E+ ++ +
Sbjct: 179 KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAAS-VFHFREIDVREL 237
Query: 566 KEHLYKEGIEVRI 578
KE+L K G+ VR+
Sbjct: 238 KEYLKKHGVNVRL 250
>pdb|1VH7|A Chain A, Crystal Structure Of A Cyclase Subunit Of
Imidazolglycerolphosphate Synthase
Length = 265
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 160/313 (51%), Gaps = 64/313 (20%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR+IACLDV+ D V KG ++ +R+ G PVEL + Y + G DE+
Sbjct: 4 LAKRIIACLDVK-----DGRVVKGTNFE--------NLRDSGDPVELGKFYSEIGIDELV 50
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT + ML+++ +E + +P TVGGGI DF E ASE
Sbjct: 51 FLDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIHDF-----------ETASELIL 96
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
GADK+SI + AV S + QI++ +G+QAVVV+ID +RV
Sbjct: 97 RGADKVSINTAAV------------ENPSLITQIAQTFGSQAVVVAIDAKRV-------- 136
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+GE + G++ I + VE GAGEILL ID DG
Sbjct: 137 ------------DGE----FMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT 180
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D ++I+ + ++P+IAS GAG +EHF + F +A A+ +FH +E+ ++ +
Sbjct: 181 KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAAS-VFHFREIDVREL 239
Query: 566 KEHLYKEGIEVRI 578
KE+L K G+ VR+
Sbjct: 240 KEYLKKHGVNVRL 252
>pdb|1GPW|A Chain A, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|C Chain C, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|E Chain E, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex
Length = 253
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 160/313 (51%), Gaps = 64/313 (20%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR+IACL+V+ D V KG ++ +R+ G PVEL + Y + G DE+
Sbjct: 2 LAKRIIACLNVK-----DGRVVKGTNFE--------NLRDSGDPVELGKFYSEIGIDELV 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT + ML+++ +E + +P TVGGGI DF E ASE
Sbjct: 49 FLDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIHDF-----------ETASELIL 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
GADK+SI + AV S + QI++ +G+QAVVV+ID +RV
Sbjct: 95 RGADKVSINTAAV------------ENPSLITQIAQTFGSQAVVVAIDAKRV-------- 134
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+GE + G++ I + VE GAGEILL ID DG
Sbjct: 135 ------------DGE----FMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT 178
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D ++I+ + ++P+IAS GAG +EHF + F +A A+ +FH +E+ ++ +
Sbjct: 179 KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAAS-VFHFREIDVREL 237
Query: 566 KEHLYKEGIEVRI 578
KE+L K G+ VR+
Sbjct: 238 KEYLKKHGVNVRL 250
>pdb|4EWN|D Chain D, Structure Of Hisf-D130v+d176v With Bound Rcdrp
Length = 253
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 158/313 (50%), Gaps = 64/313 (20%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR+IACLDV+ D V KG ++ +R+ G PVEL + Y + G DE+
Sbjct: 2 LAKRIIACLDVK-----DGRVVKGTNFE--------NLRDSGDPVELGKFYSEIGIDELV 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT + ML+++ +E + +P TVGGGI DF E ASE
Sbjct: 49 FLDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIHDF-----------ETASELIL 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
GADK+SI + AV S + QI++ +G+QAVVV+I +RV
Sbjct: 95 RGADKVSINTAAV------------ENPSLITQIAQTFGSQAVVVAIVAKRV-------- 134
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+GE + G++ I + VE GAGEILL ID G
Sbjct: 135 ------------DGE----FMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRVGT 178
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D ++I+ + ++P+IAS GAG +EHF + F +A A+ +FH +E+ ++ +
Sbjct: 179 KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAAS-VFHFREIDVREL 237
Query: 566 KEHLYKEGIEVRI 578
KE+L K G+ VR+
Sbjct: 238 KEYLKKHGVNVRL 250
>pdb|2RKX|A Chain A, The 3d Structure Of Chain D, Cyclase Subunit Of
Imidazoleglycerol_evolvedcerolphosphate Synthase
Length = 255
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 103/313 (32%), Positives = 153/313 (48%), Gaps = 64/313 (20%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR+IA L V+ D V KG ++ +R+ G PVEL + Y + G DE+S
Sbjct: 2 LAKRIIAALIVK-----DGRVVKGSNFE--------NLRDSGDPVELGKFYSEIGIDELS 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
F +IT + ML+++ +E + +P TVGGGI DF E ASE
Sbjct: 49 FWDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIHDF-----------ETASELIL 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
GADK+ I + AV S + QI++ +G+QAVVV I +RV
Sbjct: 95 RGADKVEINTAAV------------ENPSLITQIAQTFGSQAVVVYIAAKRV-------- 134
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+GE + G++ I + VE GAGEI+L ID G
Sbjct: 135 ------------DGE----FMVFTYSGKKNTGILLRDWVVEVEKRGAGEIVLGSIDRLGT 178
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D ++I+ + ++P+IA GAG +EHF + F A AA A +FH +E+ ++ +
Sbjct: 179 KSGYDTEMIRFVRPLTTLPIIAHGGAGKMEHFLEAFL-AGADAAKANSVFHFREIDVREL 237
Query: 566 KEHLYKEGIEVRI 578
KE+L K G+ VR+
Sbjct: 238 KEYLKKHGVNVRL 250
>pdb|1KA9|H Chain H, Imidazole Glycerol Phosphate Synthase
Length = 200
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 109/202 (53%), Gaps = 16/202 (7%)
Query: 52 LLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAE 111
L+DYG+GN+RS A+ GF + Q P+ A+ L+ PG G F M ++G E
Sbjct: 7 LIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQESGFVE 66
Query: 112 ALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNA 171
+ ++E+ PFLGIC+G+Q+L++ SEE V GLGL+PG V RF + RVPQ+GWNA
Sbjct: 67 RVRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAG---RVPQMGWNA 123
Query: 172 LQITKDSEILDDVGDHHVYFVHSYRA--MPSDDNKEWVSSTCNYGDNFIASVRRGNVHAV 229
L+ L H YF +SY P K T F A + + N+ A
Sbjct: 124 LEFGGAFAPLT---GRHFYFANSYYGPLTPYSLGKGEYEGT-----PFTALLAKENLLAP 175
Query: 230 QFHPEKSGDVGLSVL---RRFL 248
QFHPEKSG GL+ L RR+
Sbjct: 176 QFHPEKSGKAGLAFLALARRYF 197
>pdb|3IIO|A Chain A, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIO|B Chain B, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIO|C Chain C, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIO|D Chain D, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIO|E Chain E, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIO|F Chain F, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
Length = 262
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 152/315 (48%), Gaps = 64/315 (20%)
Query: 264 LKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADE 323
+ LAKR+ A L V+ D V KG ++ +R+ G PVEL + Y + G DE
Sbjct: 1 MALAKRIDAALIVK-----DGRVVKGSNFE--------NLRDSGDPVELGKFYSEIGIDE 47
Query: 324 ISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383
+SF +IT + ML+++ +E + +P TVGGGI DF E ASE
Sbjct: 48 LSFWDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIHDF-----------ETASEL 93
Query: 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPN 443
GADK+ I + AV S + QI++ +G+QAVVV I +RV
Sbjct: 94 ILRGADKVEINTAAV------------ENPSLITQIAQTFGSQAVVVYIAAKRV------ 135
Query: 444 DVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD 503
+GE + G + I + VE GAGEI+L ID
Sbjct: 136 --------------DGE----FMVFTYSGEKNTGILLRDWVVEVEKRGAGEIVLGSIDRL 177
Query: 504 GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQ 563
G G+D ++I+ + ++P+IA GAG +EHF + F A AA A +FH +E+ ++
Sbjct: 178 GTKSGYDTEMIRFVRPLTTLPIIAHRGAGKMEHFLEAFL-AGADAAKADSVFHFREIDVR 236
Query: 564 SVKEHLYKEGIEVRI 578
+KE+L K G+ VR+
Sbjct: 237 ELKEYLKKHGVNVRL 251
>pdb|3IIP|A Chain A, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIP|B Chain B, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIP|C Chain C, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIP|D Chain D, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIP|E Chain E, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIP|F Chain F, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
Length = 256
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 153/315 (48%), Gaps = 64/315 (20%)
Query: 264 LKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADE 323
+ LAKR+ A L V+ D V +G ++ +R+ G PVEL + Y + G DE
Sbjct: 1 MALAKRIDAALIVK-----DGRVVEGSNFE--------NLRDSGDPVELGKFYSEIGIDE 47
Query: 324 ISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383
+SF +IT + ML+++ +E + +P TVGGGI DF E ASE
Sbjct: 48 LSFWDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIHDF-----------ETASEL 93
Query: 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPN 443
GADK+ I + AV S + QI++ +G+QAVVV I +RV
Sbjct: 94 ILRGADKVEINTAAV------------ENPSLITQIAQTFGSQAVVVYIAAKRV------ 135
Query: 444 DVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD 503
D EF Y T N G I + VE GAGEI+L ID
Sbjct: 136 DGEFMVFT-------------YSGTKNTG-----ILLRDWVVEVEKRGAGEIVLGSIDRL 177
Query: 504 GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQ 563
G G+D ++I+ + ++P+IA GAG +EHF + F A AA A +FH +E+ ++
Sbjct: 178 GTKSGYDTEMIRFVRPLTTLPIIAHRGAGKMEHFLEAFL-AGADAAKADSVFHFREIDVR 236
Query: 564 SVKEHLYKEGIEVRI 578
+KE+L K G+ VR+
Sbjct: 237 ELKEYLKKHGVNVRL 251
>pdb|3IIV|A Chain A, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
pdb|3IIV|B Chain B, Evolutionary Optimization Of Computationally Designed
Enzymes: Kemp Eliminases Of The Ke07 Series
Length = 263
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 152/313 (48%), Gaps = 64/313 (20%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR+ A L ++ D V KG ++ +R+ G PVEL + Y + G DE+S
Sbjct: 2 LAKRIDAALILK-----DGRVVKGSNFE--------NLRDSGDPVELGKFYSEIGIDELS 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
F +IT + ML+++ +E + +P+TVGGGI DF E ASE
Sbjct: 49 FWDITASVE---KRKTMLELVEKVAEQIDIPITVGGGIYDF-----------ETASELIL 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
GADK+ I + AV S + QI++ +G+QAVVV I +RV D
Sbjct: 95 RGADKVEINTAAV------------ENPSLITQIAQTFGSQAVVVYIAAKRV------DG 136
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
EF Y T N G I + VE GAGEI+L ID G
Sbjct: 137 EFMVFT-------------YSGTKNTG-----ILLRDWVVEVEKRGAGEIVLGSIDRLGT 178
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D ++I+ + ++P+IA GAG EHF + F A AA A +FH +E+ ++ +
Sbjct: 179 KSGYDTEMIRFVRPLTTLPIIAHRGAGKTEHFLEAFL-AGADAAKADSVFHSREIDVREL 237
Query: 566 KEHLYKEGIEVRI 578
KE+L K G+ VR+
Sbjct: 238 KEYLKKHGVNVRL 250
>pdb|4GUD|A Chain A, Crystal Structure Of Amidotransferase Hish From Vibrio
Cholerae
pdb|4GUD|B Chain B, Crystal Structure Of Amidotransferase Hish From Vibrio
Cholerae
Length = 211
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 14/206 (6%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
V ++D G N+ SV+ AI LG+ + + P+ +L A++L PGVG + A L + +
Sbjct: 5 VVIIDTGCANISSVKFAIERLGYAVTISRDPQVVLAADKLFLPGVGTASEAXKNLTERDL 64
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGP-----VNGLGLIPGVVGRFDSSNGFRV 164
E L +EK P LGICLG QLL + SEE G V LGL+ G V R + +
Sbjct: 65 IE-LVKRVEK--PLLGICLGXQLLGKLSEEKGQKADEIVQCLGLVDGEV-RLLQTGDLPL 120
Query: 165 PQIGWNALQITKDSEILDDV-GDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRR 223
P GWN +Q+ + + + + D + YFVHS+ A P D + + C YG F A+++
Sbjct: 121 PHXGWNTVQVKEGHPLFNGIEPDAYFYFVHSF-AXPVGD---YTIAQCEYGQPFSAAIQA 176
Query: 224 GNVHAVQFHPEKSGDVGLSVLRRFLH 249
GN + VQFHPE+S G +++ FL
Sbjct: 177 GNYYGVQFHPERSSKAGARLIQNFLE 202
>pdb|1GPW|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1K9V|F Chain F, Structural Evidence For Ammonia Tunelling Across The
(Beta- Alpha)8-Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
Length = 201
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 112/205 (54%), Gaps = 19/205 (9%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDV-----QTPEDILNANRLIFPGVGAFAAAMDVL 104
+ ++ G GN+ ++ ++ +DV ++P + L + L PGVG F M L
Sbjct: 3 IGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRNDL-YDLLFIPGVGHFGEGMRRL 61
Query: 105 NKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRV 164
+ + + + ++E +R +G+CLG+QLLF+ SEE V GL LI G V + S R+
Sbjct: 62 RENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSR---RL 118
Query: 165 PQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNY-GDNFIASVRR 223
P +GWN + I KD+ + + YFVH+YRA+ + E V T Y G+ F ++VR+
Sbjct: 119 PHMGWNEV-IFKDT-----FPNGYYYFVHTYRAVCEE---EHVLGTTEYDGEIFPSAVRK 169
Query: 224 GNVHAVQFHPEKSGDVGLSVLRRFL 248
G + QFHPEKS +G +L + +
Sbjct: 170 GRILGFQFHPEKSSKIGRKLLEKVI 194
>pdb|1KXJ|A Chain A, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
pdb|1KXJ|B Chain B, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
Length = 205
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 112/205 (54%), Gaps = 19/205 (9%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDV-----QTPEDILNANRLIFPGVGAFAAAMDVL 104
+ ++ G GN+ ++ ++ +DV ++P + L + L PGVG F M L
Sbjct: 5 IGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRNDL-YDLLFIPGVGHFGEGMRRL 63
Query: 105 NKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRV 164
+ + + + ++E +R +G+CLG+QLLF+ SEE V GL LI G V + S R+
Sbjct: 64 RENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSR---RL 120
Query: 165 PQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNY-GDNFIASVRR 223
P +GWN + I KD+ + + YFVH+YRA+ + E V T Y G+ F ++VR+
Sbjct: 121 PHMGWNEV-IFKDT-----FPNGYYYFVHTYRAVCEE---EHVLGTTEYDGEIFPSAVRK 171
Query: 224 GNVHAVQFHPEKSGDVGLSVLRRFL 248
G + QFHPEKS +G +L + +
Sbjct: 172 GRILGFQFHPEKSSKIGRKLLEKVI 196
>pdb|2WJZ|B Chain B, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|D Chain D, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|F Chain F, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
Length = 201
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 110/205 (53%), Gaps = 19/205 (9%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDV-----QTPEDILNANRLIFPGVGAFAAAMDVL 104
+ ++ G GN+ ++ ++ +DV ++P + L + L PGVG F M L
Sbjct: 3 IGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRNDL-YDLLFIPGVGHFGEGMRRL 61
Query: 105 NKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRV 164
+ + + + ++E +R +G+CLG+QLLF+ SEE V GL LI G V + S R+
Sbjct: 62 RENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSR---RL 118
Query: 165 PQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNY-GDNFIASVRR 223
P +GWN + I KD+ + + FVH+YRA+ + E V T Y G+ F ++VR+
Sbjct: 119 PHMGWNEV-IFKDT-----FPNGYYAFVHTYRAVCEE---EHVLGTTEYDGEIFPSAVRK 169
Query: 224 GNVHAVQFHPEKSGDVGLSVLRRFL 248
G + QFHPE S +G +L + +
Sbjct: 170 GRILGFQFHPEASSKIGRKLLEKVI 194
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 26/179 (14%)
Query: 401 AEDYL-KTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNG 459
A+D++ T S + QI++ +G+QAVVV+ID +RV +G
Sbjct: 76 AKDFIVNTAAVENPSLITQIAQTFGSQAVVVAIDAKRV--------------------DG 115
Query: 460 EEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISD 519
E + G++ I + VE GAGEILL ID DG G+D ++I+ +
Sbjct: 116 E----FMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRP 171
Query: 520 AVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578
++P+IAS GAG +EHF + F +A A+ +FH +E+ ++ +KE+L K G+ VR+
Sbjct: 172 LTTLPIIASGGAGKMEHFLEAFLAGADAALAAS-VFHFREIDVRELKEYLKKHGVNVRL 229
>pdb|2W6R|A Chain A, Crystal Structure Of An Artificial (Ba)8-Barrel Protein
Designed From Identical Half Barrels
Length = 266
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 25/148 (16%)
Query: 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAK 485
Q VVV+ID +RV +GE + + G++ I +
Sbjct: 2 QRVVVAIDAKRV--------------------DGE----FMVFTHSGKKNTGILLRDWVV 37
Query: 486 AVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTN 545
VE GAGEILL ID DG G+D ++I+ + ++P+IAS GAG +EHF + F
Sbjct: 38 EVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-AG 96
Query: 546 ASAALAAGIFHRKEVPIQSVKEHLYKEG 573
A ALAA +FH +E+ ++ +KE+L K G
Sbjct: 97 ADKALAASVFHFREIDMRELKEYLKKHG 124
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 25/153 (16%)
Query: 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAK 485
QAVVV+ID +RV +GE + + G++ I +
Sbjct: 128 QAVVVAIDAKRV--------------------DGE----FMVFTHSGKKNTGILLRDWVV 163
Query: 486 AVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTN 545
VE GAGEILL ID DG G+D ++I+ + ++P+IAS GAG +EHF + F
Sbjct: 164 EVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGA 223
Query: 546 ASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578
+A A+ +FH +E+ ++ +KE+L K G+ VR+
Sbjct: 224 DAALAAS-VFHFREIDMRELKEYLKKHGVNVRL 255
>pdb|3OG3|A Chain A, Crystal Structure Of An Artificial Thermostable
(Ba)8-Barrel Protein From Identical Half Barrels
Length = 251
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 36/160 (22%)
Query: 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITH 441
E F +GADK+SI + AV S + QI++ +G+QAVVV+ID +RV
Sbjct: 91 EAFLAGADKVSINTAAV------------ENPSLITQIAQTFGSQAVVVAIDAKRV---- 134
Query: 442 PNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID 501
+GE + + G++ I + VE GAGEILL ID
Sbjct: 135 ----------------DGE----FMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSID 174
Query: 502 CDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVF 541
DG G+D ++I+ + ++P+IAS GAG +EHF + F
Sbjct: 175 RDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF 214
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 24/116 (20%)
Query: 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAK 485
Q VVV+ID +RV +GE + + G++ I +
Sbjct: 2 QRVVVAIDAKRV--------------------DGE----FMVFTHSGKKNTGILLRDWVV 37
Query: 486 AVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVF 541
VE GAGEILL ID DG G+D ++I+ + ++P+IAS GAG +EHF + F
Sbjct: 38 EVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF 93
>pdb|3TDN|A Chain A, Computationally Designed Two-Fold Symmetric Tim-Barrel
Protein, Flr
pdb|3TDN|B Chain B, Computationally Designed Two-Fold Symmetric Tim-Barrel
Protein, Flr
Length = 247
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 36/162 (22%)
Query: 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITH 441
E F GADK+SI + AV S + QI++ +G+QAVVV+ID +RV
Sbjct: 96 EAFLRGADKVSINTAAV------------ENPSLITQIAQTFGSQAVVVAIDAKRV---- 139
Query: 442 PNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID 501
+GE + G++ I + VE GAGEILL ID
Sbjct: 140 ----------------DGE----FMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSID 179
Query: 502 CDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRK 543
DG G+D ++I+ + ++P+IAS GAG +EHF + F +
Sbjct: 180 RDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLR 221
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 24/119 (20%)
Query: 425 NQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELA 484
+QAVVV+ID +RV +GE + G++ I +
Sbjct: 6 SQAVVVAIDAKRV--------------------DGE----FMVFTYSGKKNTGILLRDWV 41
Query: 485 KAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRK 543
VE GAGEILL ID DG G+D ++I+ + ++P+IAS GAG +EHF + F +
Sbjct: 42 VEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLR 100
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
(BetaALPHA)-Barrel From Fragments Of Different Folds
Length = 234
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 25/161 (15%)
Query: 414 SSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGR 473
S + Q+++ +G+QAVVV+ID +RV +GE + G+
Sbjct: 90 SLITQLAQTFGSQAVVVAIDAKRV--------------------DGE----FMVFTYSGK 125
Query: 474 EGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533
+ I + VE GAGEILL ID DG G+D ++I+ + ++P+IAS GAG
Sbjct: 126 KNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGK 185
Query: 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGI 574
+EHF + F +AA A+ +FH +E+ + +KE+L K G+
Sbjct: 186 MEHFLEAFLAGADAAAAAS-VFHFREIDGRELKEYLKKHGV 225
>pdb|3TDM|A Chain A, Computationally Designed Tim-Barrel Protein, Halfflr
pdb|3TDM|B Chain B, Computationally Designed Tim-Barrel Protein, Halfflr
pdb|3TDM|C Chain C, Computationally Designed Tim-Barrel Protein, Halfflr
pdb|3TDM|D Chain D, Computationally Designed Tim-Barrel Protein, Halfflr
Length = 126
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 24/119 (20%)
Query: 425 NQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELA 484
+QAVVV+ID +RV +GE + G++ I +
Sbjct: 6 SQAVVVAIDAKRV--------------------DGE----FMVFTYSGKKNTGILLRDWV 41
Query: 485 KAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRK 543
VE GAGEILL ID DG G+D ++I+ + ++P+IAS GAG +EHF + F +
Sbjct: 42 VEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLR 100
>pdb|4GJ1|A Chain A, Crystal Structure Of
1-(5-Phosphoribosyl)-5-[(5-Phosphoribosylamino)
Methylideneamino] Imidazole-4-Carboxamide Isomerase
(Hisa)
Length = 243
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 111/278 (39%), Gaps = 63/278 (22%)
Query: 286 VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQV 345
+ KGD Y+ ++ K N P++ ++Y K GA E+ +++TG +D +++
Sbjct: 18 LVKGD-YEQKKVYKYN-------PLKKFKEYEKAGAKELHLVDLTGAKDPSKRQFALIEK 69
Query: 346 LRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405
L ++ V V L VGGGIR S E G ++ IGS A+ A L
Sbjct: 70 L---AKEVSVNLQVGGGIR-----------SKEEVKALLDCGVKRVVIGSXAIKDATLCL 115
Query: 406 KTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465
+I + +G++A+V+++D T L + Y
Sbjct: 116 ------------EILKEFGSEAIVLALD-------------------TILKED------Y 138
Query: 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPV 525
VN +E E+ + G IL I DG +G ++ L KLI +
Sbjct: 139 VVAVNAWQEASDKKLXEVLDFYSNKGLKHILCTDISKDGTXQGVNVRLYKLIHEIFPNIC 198
Query: 526 IASSGAGA----VEHFSDVFRKTNASAALAAGIFHRKE 559
I +SG A +E+ + AL G+F +E
Sbjct: 199 IQASGGVASLKDLENLKGICSGVIVGKALLDGVFSVEE 236
>pdb|2ISS|D Chain D, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|E Chain E, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|F Chain F, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
Length = 208
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 81/198 (40%), Gaps = 30/198 (15%)
Query: 58 GNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYI 117
G+VR A+ LG V+ PE + + LI PG G + +L + M E L I
Sbjct: 30 GDVREHVEALHKLGVETLIVKLPEQLDMVDGLILPG-GESTTMIRILKEMDMDEKLVERI 88
Query: 118 EKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGR------FDSSNGF-RVPQIGWN 170
P C G+ LL + + N LG++ V R +S F +P +G +
Sbjct: 89 NNGLPVFATCAGVILLAKRIK-NYSQEKLGVLDITVERNAYGRQVESFETFVEIPAVGKD 147
Query: 171 ALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQ 230
+ F+ + R + + N E + +T +Y V+ GN+ A
Sbjct: 148 PFR---------------AIFIRAPRIVETGKNVE-ILATYDYDPVL---VKEGNILACT 188
Query: 231 FHPEKSGDVGLSVLRRFL 248
FHPE + D+ L R FL
Sbjct: 189 FHPELTDDLRLH--RYFL 204
>pdb|2YWJ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Methanocaldococcus Jannaschii
Length = 186
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 56/193 (29%), Positives = 84/193 (43%), Gaps = 24/193 (12%)
Query: 58 GNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYI 117
G+V AI+ G+ K V+ ED+ + LI PG G A ++ K G+ E +
Sbjct: 10 GDVEEHEEAIKKAGYEAKKVKRVEDLEGIDALIIPG-GESTAIGKLMKKYGLLEKI---K 65
Query: 118 EKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKD 177
+ P LG C G+ LL + + N + L L+ V R N + G K+
Sbjct: 66 NSNLPILGTCAGMVLLSKGTGINQIL--LELMDITVKR----NAY-----GRQVDSFEKE 114
Query: 178 SEILDDVGDHHVYFVHS--YRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEK 235
E D+G + F+ + + SDD V GD I V++G A+ FHPE
Sbjct: 115 IE-FKDLGKVYGVFIRAPVVDKILSDD----VEVIARDGDK-IVGVKQGKYMALSFHPEL 168
Query: 236 SGDVGLSVLRRFL 248
S D G V + F+
Sbjct: 169 SED-GYKVYKYFV 180
>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase
From Pyrococcus Horikoshii Ot3
Length = 209
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 46 SDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDV--QTP-EDI--LNANRLIFPGVGAFAAA 100
S ++ ++D G V + +R+LG K + TP E+I +N +IF G +
Sbjct: 19 SHMMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGPS---- 74
Query: 101 MDVLNKTGMAE-ALCAYIEKDRPFLGICLGLQLL 133
L TG E L Y E + P LGICLG QL+
Sbjct: 75 ---LENTGNCEKVLEHYDEFNVPILGICLGHQLI 105
>pdb|1Q7R|A Chain A, X-Ray Crystallographic Analysis Of A Predicted
Amidotransferase From B. Stearothermophilus At 1.9 A
Resolution
Length = 219
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 25/186 (13%)
Query: 58 GNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYI 117
G VR AI G V+ E + + L+ PG G ++++ G+ E L +
Sbjct: 33 GAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPG-GESTTXRRLIDRYGLXEPLKQFA 91
Query: 118 EKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKD 177
+P G C GL LL + +VG + G + N+ ++
Sbjct: 92 AAGKPXFGTCAGLILLAKR---------------IVGYDEPHLGLXDITVERNSFGRQRE 136
Query: 178 S---EI-LDDVGDHHV-YFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFH 232
S E+ + VGD V F+ + + + D + +++ Y D +A+ R+G FH
Sbjct: 137 SFEAELSIKGVGDGFVGVFIRAPHIVEAGDGVDVLAT---YNDRIVAA-RQGQFLGCSFH 192
Query: 233 PEKSGD 238
PE + D
Sbjct: 193 PELTDD 198
>pdb|2NV0|A Chain A, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV0|B Chain B, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
Length = 196
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 58 GNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYI 117
G VR +AI G V+ PE + + LI PG G +++ E L +
Sbjct: 11 GAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPG-GESTTMRRLIDTYQFMEPLREFA 69
Query: 118 EKDRPFLGICLGLQLLFQSSEENGPVN-GLGLIPGVVGRFDSSNGFRVPQIGWNALQITK 176
+ +P G C GL +L + E G N LGL+ VV R +S G +V + L I
Sbjct: 70 AQGKPMFGTCAGLIIL--AKEIAGSDNPHLGLLNVVVER--NSFGRQVDSFEAD-LTIKG 124
Query: 177 DSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKS 236
E V F+ + + + +N E +S + I + ++G FHPE +
Sbjct: 125 LDEPFTGV------FIRAPHILEAGENVEVLSEH----NGRIVAAKQGQFLGCSFHPELT 174
Query: 237 GD 238
D
Sbjct: 175 ED 176
>pdb|2Z6J|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
pdb|2Z6J|B Chain B, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
Length = 332
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 483 LAKAVEDLGAGEILLNCIDCDGQ-GKGFDMDLIKLISDAVSIPVIASSG 530
LAK +E +GA ++ ++ G GK M L++ ++ A+SIPVIA+ G
Sbjct: 122 LAKRMEKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGG 170
>pdb|1R9G|A Chain A, Three-Dimensional Structure Of Yaae From Bacillus Subtilis
pdb|1R9G|B Chain B, Three-Dimensional Structure Of Yaae From Bacillus Subtilis
Length = 216
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 58 GNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYI 117
G VR +AI G V+ PE + + LI PG G +++ E L +
Sbjct: 31 GAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPG-GESTTXRRLIDTYQFXEPLREFA 89
Query: 118 EKDRPFLGICLGLQLLFQSSEENGPVN-GLGLIPGVVGRFDSSNGFRVPQIGWNALQITK 176
+ +P G C GL +L + E G N LGL+ VV R +S G +V + L I
Sbjct: 90 AQGKPXFGTCAGLIIL--AKEIAGSDNPHLGLLNVVVER--NSFGRQVDSFEAD-LTIKG 144
Query: 177 DSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKS 236
E V F+ + + + +N E +S + I + ++G FHPE +
Sbjct: 145 LDEPFTGV------FIRAPHILEAGENVEVLSEH----NGRIVAAKQGQFLGCSFHPELT 194
Query: 237 GD 238
D
Sbjct: 195 ED 196
>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus
Horikoshii
Length = 189
Score = 35.4 bits (80), Expect = 0.088, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDV--QTP-EDI--LNANRLIFPGVGAFAAAMDV 103
++ ++D G V + +R+LG K + TP E+I +N +IF G +
Sbjct: 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGPS------- 54
Query: 104 LNKTGMAE-ALCAYIEKDRPFLGICLGLQLL 133
L TG E L Y E + P LGICLG QL+
Sbjct: 55 LENTGNCEKVLEHYDEFNVPILGICLGHQLI 85
>pdb|2YWD|A Chain A, Crystal Structure Of Glutamine Amidotransferase
Length = 191
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 71/182 (39%), Gaps = 16/182 (8%)
Query: 58 GNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYI 117
G+ R + A++ LG K+V+ E + LI PG G + + G+ + + +
Sbjct: 12 GDFREHKEALKRLGIEAKEVRKKEHLEGLKALIVPG-GESTTIGKLAREYGIEDEVRKRV 70
Query: 118 EK-DRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK 176
E+ G C G L + LG++ V R N F G +
Sbjct: 71 EEGSLALFGTCAGAIWLAKEIVGYPEQPRLGVLEAWVER----NAF-----GRQVESFEE 121
Query: 177 DSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKS 236
D E+ + +G H F+ RA E V GD VR+G V A FHPE +
Sbjct: 122 DLEV-EGLGSFHGVFI---RAPVFRRLGEGVEVLARLGD-LPVLVRQGKVLASSFHPELT 176
Query: 237 GD 238
D
Sbjct: 177 ED 178
>pdb|2NV2|B Chain B, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|D Chain D, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|F Chain F, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|H Chain H, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|J Chain J, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|L Chain L, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|N Chain N, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|P Chain P, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|R Chain R, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|T Chain T, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|V Chain V, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|X Chain X, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 204
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 58 GNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYI 117
G VR +AI G V+ PE + + LI PG G +++ E L +
Sbjct: 11 GAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPG-GESTTMRRLIDTYQFMEPLREFA 69
Query: 118 EKDRPFLGICLGLQLLFQSSEENGPVN-GLGLIPGVVGRFDSSNGFRVPQIGWNALQITK 176
+ +P G C GL +L + E G N LGL+ VV R +S G +V + L I
Sbjct: 70 AQGKPMFGTCAGLIIL--AKEIAGSDNPHLGLLNVVVER--NSFGRQVDSFEAD-LTIKG 124
Query: 177 DSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKS 236
E V F+ + + + +N E +S + I + ++G F+PE +
Sbjct: 125 LDEPFTGV------FIRAPHILEAGENVEVLSEH----NGRIVAAKQGQFLGCSFNPELT 174
Query: 237 GD 238
D
Sbjct: 175 ED 176
>pdb|2Z6I|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk)
pdb|2Z6I|B Chain B, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk)
Length = 332
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 483 LAKAVEDLGAGEILLNCIDCDGQ-GKGFDMDLIKLISDAVSIPVIASSG 530
LAK E +GA ++ + G GK L++ ++ A+SIPVIA+ G
Sbjct: 122 LAKRXEKIGADAVIAEGXEAGGHIGKLTTXTLVRQVATAISIPVIAAGG 170
>pdb|1N19|A Chain A, Structure Of The Hsod A4v Mutant
pdb|1N19|B Chain B, Structure Of The Hsod A4v Mutant
Length = 154
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 109 MAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG 168
MA + A ++ D P GI + F+ E NGPV G I G+ + +GF V + G
Sbjct: 1 MATKVVAVLKGDGPVQGI-----INFEQKESNGPVKVWGSIKGLT---EGLHGFHVHEFG 52
Query: 169 WNALQIT 175
N T
Sbjct: 53 DNTAGCT 59
>pdb|2CFF|A Chain A, Crystal Structure Of N-((5'-Phosphoribosyl)-Formimino)-5-
Aminoimidazol-4-Carboxamid Ribonucleotid Isomerase
Mutant D127v (Ec 3.1.3.15, Hisa)
pdb|2CFF|B Chain B, Crystal Structure Of N-((5'-Phosphoribosyl)-Formimino)-5-
Aminoimidazol-4-Carboxamid Ribonucleotid Isomerase
Mutant D127v (Ec 3.1.3.15, Hisa)
Length = 241
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 86/232 (37%), Gaps = 57/232 (24%)
Query: 299 KENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLT 358
KEN + PVEL + +EG I ++++ + +LP+L+ L +E++
Sbjct: 22 KENTIFYEKDPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLSEFAEHI----Q 77
Query: 359 VGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQ 418
+GGGIR A E R + I S V +LK SL +
Sbjct: 78 IGGGIRSLDYA------------EKLRKLGYRRQIVSSKVLEDPSFLK--------SLRE 117
Query: 419 ISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPI 478
I ++P +T V FK G EE I
Sbjct: 118 I-----------DVEPVFSLVTRGGRVAFK-------GWLAEE---------------EI 144
Query: 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSG 530
L K +++ G EI+ I+ DG + D L K I+ + V+A+ G
Sbjct: 145 DPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGG 196
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 30/215 (13%)
Query: 39 LSIRATSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIF-PGVGAF 97
L++ + DS V + G + S IR+ IK ++ ++ +RLI PG G
Sbjct: 3 LTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIER----IDPDRLIISPGPGTP 58
Query: 98 AAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFD 157
D+ G++ + Y+ K P LG+CLG Q +G G R
Sbjct: 59 EKREDI----GVSLDVIKYLGKRTPILGVCLGHQ-------------AIGYAFGAKIR-- 99
Query: 158 SSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDD-NKEWVSSTCNYGDN 216
+V + + + +S + G + Y ++ D+ ++ + + DN
Sbjct: 100 --RARKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVDEVHRPLIVDAISAEDN 157
Query: 217 FIASVRRGN--VHAVQFHPEKSG-DVGLSVLRRFL 248
I ++ ++ VQFHPE G +G +L FL
Sbjct: 158 EIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFL 192
>pdb|1N18|A Chain A, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|B Chain B, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|C Chain C, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|D Chain D, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|E Chain E, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|F Chain F, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|G Chain G, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|H Chain H, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|I Chain I, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|J Chain J, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
Length = 154
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 109 MAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG 168
MA A ++ D P GI + F+ E NGPV G I G+ + +GF V + G
Sbjct: 1 MATKAVAVLKGDGPVQGI-----INFEQKESNGPVKVWGSIKGLT---EGLHGFHVHEFG 52
Query: 169 WNALQIT 175
N T
Sbjct: 53 DNTAGCT 59
>pdb|2R27|A Chain A, Constitutively Zinc-Deficient Mutant Of Human Superoxide
Dismutase (Sod), C6a, H80s, H83s, C111s
pdb|2R27|B Chain B, Constitutively Zinc-Deficient Mutant Of Human Superoxide
Dismutase (Sod), C6a, H80s, H83s, C111s
Length = 154
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 109 MAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG 168
MA A ++ D P GI + F+ E NGPV G I G+ + +GF V + G
Sbjct: 1 MATKAVAVLKGDGPVQGI-----INFEQKESNGPVKVWGSIKGLT---EGLHGFHVHEFG 52
Query: 169 WNALQIT 175
N T
Sbjct: 53 DNTAGCT 59
>pdb|3GQF|A Chain A, Structural And Biophysical Properties Of The Pathogenic
Sod1 Variant H46rH48Q
pdb|3GQF|B Chain B, Structural And Biophysical Properties Of The Pathogenic
Sod1 Variant H46rH48Q
pdb|3GQF|C Chain C, Structural And Biophysical Properties Of The Pathogenic
Sod1 Variant H46rH48Q
pdb|3GQF|D Chain D, Structural And Biophysical Properties Of The Pathogenic
Sod1 Variant H46rH48Q
pdb|3GQF|E Chain E, Structural And Biophysical Properties Of The Pathogenic
Sod1 Variant H46rH48Q
pdb|3GQF|F Chain F, Structural And Biophysical Properties Of The Pathogenic
Sod1 Variant H46rH48Q
pdb|3K91|A Chain A, Polysulfane Bridge In Cu-Zn Superoxide Dismutase
pdb|3K91|B Chain B, Polysulfane Bridge In Cu-Zn Superoxide Dismutase
Length = 153
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 111 EALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWN 170
+A+C ++ D P GI + F+ E NGPV G I G+ + +GFRV + G N
Sbjct: 3 KAVC-VLKGDGPVQGI-----INFEQKESNGPVKVWGSIKGLT---EGLHGFRVQEFGDN 53
Query: 171 ALQIT 175
T
Sbjct: 54 TAGCT 58
>pdb|2NNX|A Chain A, Crystal Structure Of The H46r, H48q Double Mutant Of Human
[cu-Zn] Superoxide Dismutase
pdb|2NNX|B Chain B, Crystal Structure Of The H46r, H48q Double Mutant Of Human
[cu-Zn] Superoxide Dismutase
pdb|2NNX|C Chain C, Crystal Structure Of The H46r, H48q Double Mutant Of Human
[cu-Zn] Superoxide Dismutase
pdb|2NNX|D Chain D, Crystal Structure Of The H46r, H48q Double Mutant Of Human
[cu-Zn] Superoxide Dismutase
Length = 154
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 111 EALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWN 170
+A+C ++ D P GI + F+ E NGPV G I G+ + +GFRV + G N
Sbjct: 4 KAVC-VLKGDGPVQGI-----INFEQKESNGPVKVWGSIKGLT---EGLHGFRVQEFGDN 54
Query: 171 ALQIT 175
T
Sbjct: 55 TAGCT 59
>pdb|1YAD|A Chain A, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|B Chain B, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|C Chain C, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|D Chain D, Structure Of Teni From Bacillus Subtilis
pdb|3QH2|A Chain A, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|B Chain B, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|C Chain C, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|D Chain D, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
Length = 221
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 475 GRPIGAYELAKAVEDLGAGEILLNCI---DCDGQGKGFDMDLIKLISDAVSIPVIASSGA 531
GR + + E A E A +L + DC +G + L+ I +SIPVIA G
Sbjct: 114 GRSVHSLEEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM 173
Query: 532 GAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571
+ DV + A+ +GIF E P+++ + + K
Sbjct: 174 TP-DRLRDVKQAGADGIAVMSGIFSSAE-PLEAARRYSRK 211
>pdb|1OEZ|W Chain W, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OEZ|X Chain X, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OEZ|Y Chain Y, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OEZ|Z Chain Z, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OZT|M Chain M, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|N Chain N, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|G Chain G, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|H Chain H, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|K Chain K, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|L Chain L, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|I Chain I, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|J Chain J, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
Length = 153
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 111 EALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWN 170
+A+C ++ D P GI + F+ E NGPV G I G+ + +GFRV + G N
Sbjct: 3 KAVC-VLKGDGPVQGI-----INFEQKESNGPVKVWGSIKGLT---EGLHGFRVHEFGDN 53
Query: 171 ALQIT 175
T
Sbjct: 54 TAGCT 58
>pdb|4BCZ|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form.
pdb|4BCZ|B Chain B, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form
Length = 110
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
A A ++ D P GI + F+ E NGPV G I G+ + +GF V G
Sbjct: 1 ATKAVAVLKGDGPVQGI-----INFEQKESNGPVKVWGSIKGLT---EGLHGFHVHGAGG 52
Query: 170 NALQITKDSEILDDV 184
+ +T D + + DV
Sbjct: 53 DLGNVTADKDGVADV 67
>pdb|2WYZ|A Chain A, L38v Sod1 Mutant Complexed With Ump
pdb|2WYZ|F Chain F, L38v Sod1 Mutant Complexed With Ump
Length = 153
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 111 EALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWN 170
+A+C ++ D P GI + F+ E NGPV G I GV + +GF V + G N
Sbjct: 3 KAVC-VLKGDGPVQGI-----INFEQKESNGPVKVWGSIKGVT---EGLHGFHVHEFGDN 53
Query: 171 ALQIT 175
T
Sbjct: 54 TAGCT 58
>pdb|2WYT|A Chain A, 1.0 A Resolution Structure Of L38v Sod1 Mutant
pdb|2WYT|F Chain F, 1.0 A Resolution Structure Of L38v Sod1 Mutant
pdb|2WZ0|A Chain A, L38v Sod1 Mutant Complexed With Aniline.
pdb|2WZ0|F Chain F, L38v Sod1 Mutant Complexed With Aniline.
pdb|2WZ5|A Chain A, L38v Sod1 Mutant Complexed With L-Methionine.
pdb|2WZ5|F Chain F, L38v Sod1 Mutant Complexed With L-Methionine
Length = 153
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 111 EALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWN 170
+A+C ++ D P GI + F+ E NGPV G I GV + +GF V + G N
Sbjct: 3 KAVC-VLKGDGPVQGI-----INFEQKESNGPVKVWGSIKGVT---EGLHGFHVHEFGDN 53
Query: 171 ALQIT 175
T
Sbjct: 54 TAGCT 58
>pdb|1QO2|A Chain A, Crystal Structure Of N-((5'-Phosphoribosyl)-Formimino)-5-
Aminoimidazol-4-Carboxamid Ribonucleotid Isomerase (Ec
3.1.3.15, Hisa)
pdb|1QO2|B Chain B, Crystal Structure Of N-((5'-Phosphoribosyl)-Formimino)-5-
Aminoimidazol-4-Carboxamid Ribonucleotid Isomerase (Ec
3.1.3.15, Hisa)
Length = 241
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 299 KENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLT 358
KEN + PVEL + +EG I ++++ + +LP+L+ L +E++
Sbjct: 22 KENTIFYEKDPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLSEFAEHI----Q 77
Query: 359 VGGGIRDF 366
+GGGIR
Sbjct: 78 IGGGIRSL 85
>pdb|4B3E|A Chain A, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|B Chain B, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|C Chain C, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|D Chain D, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|E Chain E, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|F Chain F, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|G Chain G, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|H Chain H, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|I Chain I, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|J Chain J, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate
Length = 154
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 109 MAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG 168
MA ++ D P GI + F+ E NGPV G I G+ + +GF V + G
Sbjct: 1 MATKAVCVLKGDGPVQGI-----INFEQKESNGPVKVWGSIKGLT---EGLHGFHVHEFG 52
Query: 169 WNALQIT 175
N T
Sbjct: 53 DNTAGCT 59
>pdb|4BD4|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
pdb|4BD4|B Chain B, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
pdb|4BD4|C Chain C, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
pdb|4BD4|D Chain D, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
pdb|4BD4|E Chain E, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
pdb|4BD4|F Chain F, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
pdb|4BD4|G Chain G, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
pdb|4BD4|H Chain H, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
pdb|4BD4|I Chain I, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
Length = 110
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVV-GRFDSSNGFRVPQIG 168
A A ++ D P GI + F+ E NGPV G I G+ G F GF V G
Sbjct: 1 ATKAVAVLKGDGPVQGI-----INFEQKESNGPVKVWGSIKGLTEGLF----GFHVHGAG 51
Query: 169 WNALQITKDSEILDDV 184
+ +T D + + DV
Sbjct: 52 GDLGNVTADKDGVADV 67
>pdb|2ZKW|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group P21
pdb|2ZKW|B Chain B, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group P21
pdb|2ZKX|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group I212121
pdb|2ZKX|B Chain B, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group I212121
pdb|2ZKX|C Chain C, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group I212121
pdb|2ZKX|D Chain D, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group I212121
Length = 159
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 109 MAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG 168
MA ++ D P GI + F+ E NGPV G I G+ + +GF V + G
Sbjct: 6 MATKAVCVLKGDGPVQGI-----INFEQKESNGPVKVWGSIKGLT---EGLHGFHVHEFG 57
Query: 169 WNALQIT 175
N T
Sbjct: 58 DNTAGCT 64
>pdb|2ZKY|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|B Chain B, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|C Chain C, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|D Chain D, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|E Chain E, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|F Chain F, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|G Chain G, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|H Chain H, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|I Chain I, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|J Chain J, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
Length = 159
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 109 MAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG 168
MA ++ D P GI + F+ E NGPV G I G+ + +GF V + G
Sbjct: 6 MATKAVCVLKGDGPVQGI-----INFEQKESNGPVKVWGSIKGLT---EGLHGFHVHEFG 57
Query: 169 WNALQIT 175
N T
Sbjct: 58 DNTAGCT 64
>pdb|4ED9|A Chain A, Crystal Structure Of A CaibBAIF FAMILY PROTEIN FROM
BRUCELLA SUIS
Length = 385
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 55/136 (40%), Gaps = 24/136 (17%)
Query: 361 GGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSS----- 415
GGI D T R + VA AD I G +V A + L +TGK
Sbjct: 155 GGIMDLTGEPDREPQKIGVAF------AD-IFTGLYSVIAIQSALIMRARTGKGQHIDMA 207
Query: 416 -LEQISRVYGNQAV---VVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNG 471
+ +S V NQA+ P+R+ HPN ++ + V+D Y C +G
Sbjct: 208 LFDCMSGVLANQAMNYLASGKSPKRMGNAHPNIAPYQTLSVSD------GYFIIACGNDG 261
Query: 472 --GREGRPIGAYELAK 485
G+ +G ELAK
Sbjct: 262 QFGKLSTLLGIGELAK 277
>pdb|3BW4|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of
Nitroalkane Oxidase From Streptomyces Ansochromogenes
Length = 369
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 14/62 (22%)
Query: 482 ELAKAVEDLGAGEILLNCIDC-------------DGQGKGFDMDLIKLISDAVSIPVIAS 528
E A+AVE GA ++ ++ DG G G + L+ + +AV IPV+A+
Sbjct: 156 EEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGL-LSLLAQVREAVDIPVVAA 214
Query: 529 SG 530
G
Sbjct: 215 GG 216
>pdb|3BW2|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of
Nitroalkane Oxidase From Streptomyces Ansochromogenes
Length = 369
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 14/62 (22%)
Query: 482 ELAKAVEDLGAGEILLNCIDC-------------DGQGKGFDMDLIKLISDAVSIPVIAS 528
E A+AVE GA ++ ++ DG G G + L+ + +AV IPV+A+
Sbjct: 156 EEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGL-LSLLAQVREAVDIPVVAA 214
Query: 529 SG 530
G
Sbjct: 215 GG 216
>pdb|3BW3|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of
Nitroalkane Oxidase From Streptomyces Ansochromogenes
Length = 369
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 14/62 (22%)
Query: 482 ELAKAVEDLGAGEILLNCIDC-------------DGQGKGFDMDLIKLISDAVSIPVIAS 528
E A+AVE GA ++ ++ DG G G + L+ + +AV IPV+A+
Sbjct: 156 EEARAVEAAGADAVIAQGVEAGGDQGTHRDSSEDDGAGIGL-LSLLAQVREAVDIPVVAA 214
Query: 529 SG 530
G
Sbjct: 215 GG 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,442,273
Number of Sequences: 62578
Number of extensions: 786742
Number of successful extensions: 1918
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1770
Number of HSP's gapped (non-prelim): 79
length of query: 578
length of database: 14,973,337
effective HSP length: 104
effective length of query: 474
effective length of database: 8,465,225
effective search space: 4012516650
effective search space used: 4012516650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)