Query 045794
Match_columns 578
No_of_seqs 442 out of 3534
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:35:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02617 imidazole glycerol ph 100.0 5.4E-95 1.2E-99 790.9 57.7 533 46-578 5-538 (538)
2 KOG0623 Glutamine amidotransfe 100.0 1.8E-87 3.8E-92 661.3 42.6 530 48-578 2-541 (541)
3 COG0107 HisF Imidazoleglycerol 100.0 1.1E-59 2.5E-64 445.7 26.6 255 265-578 1-255 (256)
4 COG0106 HisA Phosphoribosylfor 100.0 6.2E-52 1.3E-56 401.9 24.2 237 268-571 2-240 (241)
5 PRK14114 1-(5-phosphoribosyl)- 100.0 3.8E-50 8.2E-55 400.0 25.5 234 268-570 1-241 (241)
6 PLN02446 (5-phosphoribosyl)-5- 100.0 2.1E-49 4.6E-54 393.0 25.5 247 269-572 2-260 (262)
7 PF00977 His_biosynth: Histidi 100.0 2.6E-49 5.7E-54 393.0 17.7 228 269-561 1-229 (229)
8 PRK13586 1-(5-phosphoribosyl)- 100.0 5.9E-47 1.3E-51 375.3 24.2 224 268-560 2-226 (232)
9 TIGR01919 hisA-trpF 1-(5-phosp 100.0 1.1E-46 2.3E-51 376.3 25.3 236 267-568 2-241 (243)
10 PRK13587 1-(5-phosphoribosyl)- 100.0 1.5E-46 3.3E-51 373.7 23.4 224 268-558 2-227 (234)
11 PRK14024 phosphoribosyl isomer 100.0 5.7E-46 1.2E-50 372.1 24.3 234 267-569 3-239 (241)
12 PRK01033 imidazole glycerol ph 100.0 3.6E-45 7.8E-50 369.7 27.3 250 265-576 1-258 (258)
13 TIGR02129 hisA_euk phosphoribo 100.0 1.7E-45 3.8E-50 363.8 23.5 233 269-565 2-248 (253)
14 TIGR00735 hisF imidazoleglycer 100.0 8.3E-45 1.8E-49 366.7 28.3 254 265-577 1-254 (254)
15 PRK02083 imidazole glycerol ph 100.0 2.2E-44 4.7E-49 363.7 27.9 253 265-578 1-253 (253)
16 cd04723 HisA_HisF Phosphoribos 100.0 1.2E-43 2.5E-48 353.5 22.4 230 269-566 1-232 (233)
17 PRK04128 1-(5-phosphoribosyl)- 100.0 4.9E-43 1.1E-47 346.9 23.0 224 268-567 2-226 (228)
18 TIGR00734 hisAF_rel hisA/hisF 100.0 3.2E-41 6.9E-46 332.7 20.8 217 268-560 1-221 (221)
19 PRK13585 1-(5-phosphoribosyl)- 100.0 1.9E-40 4.1E-45 332.7 26.0 238 267-570 2-240 (241)
20 PRK00748 1-(5-phosphoribosyl)- 100.0 8.8E-41 1.9E-45 333.4 23.3 231 268-564 1-232 (233)
21 TIGR00007 phosphoribosylformim 100.0 1.3E-40 2.8E-45 331.6 23.3 228 270-563 1-229 (230)
22 cd04732 HisA HisA. Phosphorib 100.0 3.2E-39 6.9E-44 322.3 25.3 232 269-566 1-233 (234)
23 cd04731 HisF The cyclase subun 100.0 5E-38 1.1E-42 315.6 26.6 243 268-572 1-243 (243)
24 COG0118 HisH Glutamine amidotr 100.0 3.2E-38 7E-43 297.1 21.5 201 48-251 2-203 (204)
25 TIGR03572 WbuZ glycosyl amidat 100.0 1E-37 2.3E-42 311.1 25.4 231 265-557 1-232 (232)
26 CHL00188 hisH imidazole glycer 100.0 6.4E-33 1.4E-37 271.2 22.2 200 48-250 2-209 (210)
27 PRK13142 hisH imidazole glycer 100.0 4.4E-32 9.6E-37 260.0 19.3 187 50-251 2-188 (192)
28 PRK13152 hisH imidazole glycer 100.0 2.6E-31 5.5E-36 259.3 22.5 197 50-249 2-200 (201)
29 PRK13170 hisH imidazole glycer 100.0 5.3E-31 1.1E-35 255.9 22.3 194 48-249 1-195 (196)
30 PRK14004 hisH imidazole glycer 100.0 7.1E-31 1.5E-35 256.8 21.9 197 50-251 2-210 (210)
31 PRK13146 hisH imidazole glycer 100.0 1.3E-30 2.9E-35 255.5 21.7 201 48-251 2-208 (209)
32 PRK13181 hisH imidazole glycer 100.0 5.4E-30 1.2E-34 249.7 20.8 196 50-249 2-198 (199)
33 cd01748 GATase1_IGP_Synthase T 100.0 3E-29 6.5E-34 244.2 21.6 197 50-248 1-198 (198)
34 COG1411 Uncharacterized protei 100.0 8.8E-29 1.9E-33 229.8 16.7 224 268-567 1-225 (229)
35 PRK13141 hisH imidazole glycer 100.0 3.3E-28 7.3E-33 238.2 21.8 200 50-252 2-203 (205)
36 TIGR01855 IMP_synth_hisH imida 100.0 2.8E-28 6E-33 237.0 21.0 194 50-249 1-195 (196)
37 PRK13143 hisH imidazole glycer 100.0 4.9E-28 1.1E-32 236.0 22.7 199 48-252 1-199 (200)
38 TIGR00888 guaA_Nterm GMP synth 99.9 3.7E-25 7.9E-30 213.8 18.2 177 50-253 1-187 (188)
39 COG0505 CarA Carbamoylphosphat 99.9 3.6E-25 7.8E-30 224.1 18.2 177 45-254 177-365 (368)
40 PRK06895 putative anthranilate 99.9 1.3E-24 2.9E-29 210.2 20.8 178 48-249 2-187 (190)
41 COG0512 PabA Anthranilate/para 99.9 3.5E-24 7.5E-29 201.3 21.3 177 48-251 2-191 (191)
42 cd01742 GATase1_GMP_Synthase T 99.9 1.2E-24 2.5E-29 208.9 17.6 172 50-248 1-181 (181)
43 PLN02347 GMP synthetase 99.9 3.8E-24 8.3E-29 235.0 24.1 260 49-358 12-288 (536)
44 PLN02832 glutamine amidotransf 99.9 5.3E-24 1.2E-28 211.2 19.3 196 48-254 2-217 (248)
45 PRK00758 GMP synthase subunit 99.9 3.8E-24 8.3E-29 205.9 17.3 173 50-252 2-182 (184)
46 PRK13525 glutamine amidotransf 99.9 4.2E-23 9.2E-28 199.3 21.7 186 48-252 2-188 (189)
47 PRK06774 para-aminobenzoate sy 99.9 4E-23 8.6E-28 200.1 20.0 176 50-249 2-190 (191)
48 PRK08007 para-aminobenzoate sy 99.9 4.7E-23 1E-27 198.8 19.7 174 50-249 2-186 (187)
49 PRK05670 anthranilate synthase 99.9 5.1E-23 1.1E-27 199.0 19.6 177 50-252 2-189 (189)
50 PRK00074 guaA GMP synthase; Re 99.9 6.5E-23 1.4E-27 225.7 23.0 261 48-359 4-275 (511)
51 CHL00101 trpG anthranilate syn 99.9 4.3E-23 9.2E-28 199.6 18.8 176 50-250 2-188 (190)
52 PLN02335 anthranilate synthase 99.9 8.3E-23 1.8E-27 202.0 20.6 189 44-254 15-216 (222)
53 cd01743 GATase1_Anthranilate_S 99.9 1.4E-22 3E-27 195.1 20.6 174 50-248 1-184 (184)
54 PRK07649 para-aminobenzoate/an 99.9 1.1E-22 2.4E-27 197.3 19.5 178 50-252 2-189 (195)
55 PRK05637 anthranilate synthase 99.9 4.1E-22 8.8E-27 194.9 20.3 179 49-253 3-207 (208)
56 PRK07765 para-aminobenzoate sy 99.9 6.2E-22 1.3E-26 194.8 21.5 185 48-257 1-198 (214)
57 TIGR00566 trpG_papA glutamine 99.9 7.7E-22 1.7E-26 190.5 20.8 174 50-249 2-187 (188)
58 TIGR01815 TrpE-clade3 anthrani 99.9 4.3E-22 9.2E-27 225.0 22.0 186 43-254 512-711 (717)
59 COG0518 GuaA GMP synthase - Gl 99.9 9.3E-23 2E-27 197.2 13.7 179 48-249 2-191 (198)
60 PRK12564 carbamoyl phosphate s 99.9 1.3E-21 2.7E-26 205.3 22.1 188 33-251 161-360 (360)
61 PRK08857 para-aminobenzoate sy 99.9 1.4E-21 3E-26 189.6 20.1 176 50-250 2-192 (193)
62 PF00117 GATase: Glutamine ami 99.9 5.9E-22 1.3E-26 191.7 17.1 174 51-249 1-190 (192)
63 TIGR01368 CPSaseIIsmall carbam 99.9 1.3E-21 2.8E-26 204.9 20.6 188 33-252 157-357 (358)
64 PRK13566 anthranilate synthase 99.9 3.2E-21 7E-26 218.3 23.4 186 42-252 521-719 (720)
65 cd01749 GATase1_PB Glutamine A 99.9 3.8E-21 8.2E-26 184.9 18.5 181 50-248 1-183 (183)
66 PRK12838 carbamoyl phosphate s 99.9 6.3E-21 1.4E-25 199.5 21.6 188 33-253 155-352 (354)
67 KOG0370 Multifunctional pyrimi 99.9 2.6E-21 5.7E-26 212.0 18.8 180 46-256 171-357 (1435)
68 CHL00197 carA carbamoyl-phosph 99.9 1.2E-20 2.6E-25 198.6 20.7 175 46-254 191-377 (382)
69 PRK06490 glutamine amidotransf 99.9 1.4E-20 3.1E-25 188.0 18.8 176 48-250 8-192 (239)
70 TIGR03800 PLP_synth_Pdx2 pyrid 99.9 6.4E-20 1.4E-24 176.3 20.6 183 49-249 1-184 (184)
71 cd01744 GATase1_CPSase Small c 99.9 5.2E-20 1.1E-24 176.3 19.8 168 50-248 1-178 (178)
72 PLN02771 carbamoyl-phosphate s 99.8 5.9E-20 1.3E-24 193.7 19.8 158 48-238 241-407 (415)
73 PRK09522 bifunctional glutamin 99.8 9.4E-20 2E-24 200.7 20.1 179 48-254 2-193 (531)
74 PRK07053 glutamine amidotransf 99.8 9.6E-20 2.1E-24 181.5 17.9 172 49-249 4-190 (234)
75 PRK13527 glutamine amidotransf 99.8 8.4E-20 1.8E-24 178.1 17.2 187 49-252 2-198 (200)
76 KOG3055 Phosphoribosylformimin 99.8 1.4E-19 3.1E-24 167.0 17.3 245 268-572 7-259 (263)
77 COG2071 Predicted glutamine am 99.8 4.5E-20 9.7E-25 178.9 13.2 188 61-254 29-241 (243)
78 PRK05665 amidotransferase; Pro 99.8 3.4E-19 7.4E-24 178.0 19.8 165 59-245 23-198 (240)
79 PRK09065 glutamine amidotransf 99.8 2E-19 4.4E-24 179.8 16.3 162 62-249 26-198 (237)
80 PLN02889 oxo-acid-lyase/anthra 99.8 9.3E-19 2E-23 200.1 22.6 184 48-254 82-338 (918)
81 TIGR01823 PabB-fungal aminodeo 99.8 8.6E-19 1.9E-23 199.9 21.7 184 45-254 3-207 (742)
82 PRK13526 glutamine amidotransf 99.8 1.7E-18 3.7E-23 163.5 19.2 176 48-249 3-178 (179)
83 cd01741 GATase1_1 Subgroup of 99.8 7.2E-19 1.6E-23 169.7 17.0 171 50-248 2-188 (188)
84 cd00331 IGPS Indole-3-glycerol 99.8 6.4E-19 1.4E-23 174.0 15.7 187 303-566 27-215 (217)
85 PRK14607 bifunctional glutamin 99.8 7.8E-19 1.7E-23 194.6 18.1 178 50-252 2-190 (534)
86 PRK08250 glutamine amidotransf 99.8 1.3E-18 2.7E-23 173.7 17.5 177 49-251 2-194 (235)
87 PRK06186 hypothetical protein; 99.8 7.3E-19 1.6E-23 172.3 14.9 192 48-253 2-228 (229)
88 cd01750 GATase1_CobQ Type 1 gl 99.8 2.8E-18 6E-23 166.5 18.9 186 50-248 1-194 (194)
89 COG0311 PDX2 Predicted glutami 99.8 3.7E-18 7.9E-23 158.3 17.8 189 48-254 1-193 (194)
90 PRK11366 puuD gamma-glutamyl-g 99.8 3.5E-18 7.6E-23 172.4 17.0 179 61-254 29-247 (254)
91 KOG0026 Anthranilate synthase, 99.8 1.1E-17 2.3E-22 151.4 16.7 193 40-254 12-217 (223)
92 PRK07567 glutamine amidotransf 99.8 5.1E-18 1.1E-22 170.0 16.2 164 61-249 18-202 (242)
93 PF01174 SNO: SNO glutamine am 99.8 7.9E-18 1.7E-22 158.1 15.2 186 52-252 1-187 (188)
94 cd03130 GATase1_CobB Type 1 gl 99.8 3.3E-17 7.1E-22 159.5 18.7 181 59-248 12-198 (198)
95 TIGR01737 FGAM_synth_I phospho 99.8 1.8E-17 3.9E-22 164.7 17.2 187 48-250 1-226 (227)
96 cd01745 GATase1_2 Subgroup of 99.7 9.1E-18 2E-22 162.3 13.0 145 59-248 20-189 (189)
97 PF04131 NanE: Putative N-acet 99.7 4.8E-18 1E-22 159.6 9.5 169 343-570 21-191 (192)
98 PF07722 Peptidase_C26: Peptid 99.7 2.6E-17 5.7E-22 162.4 12.6 162 61-234 27-217 (217)
99 KOG1622 GMP synthase [Nucleoti 99.7 1.8E-17 3.9E-22 170.9 11.0 260 48-359 17-290 (552)
100 TIGR00337 PyrG CTP synthase. C 99.7 1.8E-16 4E-21 171.3 17.4 195 44-250 286-525 (525)
101 PRK03619 phosphoribosylformylg 99.7 3.5E-16 7.5E-21 154.6 17.6 186 48-249 1-218 (219)
102 PRK05380 pyrG CTP synthetase; 99.7 2.7E-16 5.7E-21 170.1 16.9 199 44-254 285-529 (533)
103 cd01747 GATase1_Glutamyl_Hydro 99.7 1.2E-16 2.5E-21 162.8 11.8 182 59-256 21-251 (273)
104 cd01746 GATase1_CTP_Synthase T 99.7 9E-16 2E-20 152.9 16.2 157 82-248 52-235 (235)
105 TIGR00379 cobB cobyrinic acid 99.7 3.6E-15 7.7E-20 162.5 20.3 199 47-252 244-448 (449)
106 PRK13896 cobyrinic acid a,c-di 99.6 9.8E-15 2.1E-19 156.9 20.6 189 48-250 234-432 (433)
107 PRK01077 cobyrinic acid a,c-di 99.6 1.1E-14 2.5E-19 158.8 21.4 198 47-252 245-449 (451)
108 COG0504 PyrG CTP synthase (UTP 99.6 2.9E-15 6.2E-20 157.4 14.9 200 44-254 285-529 (533)
109 PLN02327 CTP synthase 99.6 3.1E-15 6.7E-20 162.1 14.3 201 44-254 294-549 (557)
110 PRK00784 cobyric acid synthase 99.6 1.7E-14 3.6E-19 159.0 19.5 189 47-255 251-450 (488)
111 KOG1224 Para-aminobenzoate (PA 99.6 9.7E-15 2.1E-19 153.1 15.9 181 46-252 13-218 (767)
112 KOG3179 Predicted glutamine sy 99.6 5.2E-15 1.1E-19 138.5 9.5 157 59-237 26-196 (245)
113 COG3010 NanE Putative N-acetyl 99.6 2.9E-14 6.2E-19 134.3 13.4 190 310-571 36-228 (229)
114 PF07685 GATase_3: CobB/CobQ-l 99.5 1.4E-13 3E-18 129.2 16.1 145 81-237 3-155 (158)
115 COG1797 CobB Cobyrinic acid a, 99.5 2.4E-13 5.1E-18 142.4 18.1 197 47-251 245-450 (451)
116 PRK06278 cobyrinic acid a,c-di 99.5 1.5E-13 3.3E-18 149.2 16.2 187 48-256 1-204 (476)
117 TIGR00313 cobQ cobyric acid sy 99.5 2.9E-13 6.3E-18 148.3 17.6 185 48-254 248-440 (475)
118 PRK01033 imidazole glycerol ph 99.5 1.5E-13 3.3E-18 139.2 11.1 123 426-576 4-127 (258)
119 cd04731 HisF The cyclase subun 99.5 1.8E-13 3.8E-18 137.6 11.1 121 427-575 2-123 (243)
120 COG0107 HisF Imidazoleglycerol 99.5 1.4E-13 3E-18 132.1 8.8 125 426-577 4-128 (256)
121 PRK01175 phosphoribosylformylg 99.5 1.8E-12 3.9E-17 130.9 17.2 193 47-251 3-257 (261)
122 COG0047 PurL Phosphoribosylfor 99.5 3.2E-12 7E-17 123.2 17.6 189 47-251 2-230 (231)
123 COG1492 CobQ Cobyric acid synt 99.5 2.4E-12 5.2E-17 137.3 18.3 191 46-254 250-449 (486)
124 KOG3210 Imidazoleglycerol-phos 99.4 7.7E-13 1.7E-17 120.2 11.6 191 46-250 10-218 (226)
125 TIGR00735 hisF imidazoleglycer 99.4 4.6E-13 9.9E-18 135.5 10.3 121 426-576 4-127 (254)
126 PRK10415 tRNA-dihydrouridine s 99.4 1.6E-12 3.6E-17 135.6 11.4 100 471-571 143-243 (321)
127 TIGR03572 WbuZ glycosyl amidat 99.4 1.7E-12 3.8E-17 129.5 10.8 125 425-576 3-127 (232)
128 PRK00748 1-(5-phosphoribosyl)- 99.4 2.2E-12 4.8E-17 128.7 11.0 113 427-570 2-121 (233)
129 PRK01130 N-acetylmannosamine-6 99.4 1.1E-11 2.4E-16 122.8 15.8 198 303-570 19-220 (221)
130 COG3442 Predicted glutamine am 99.4 9.7E-12 2.1E-16 118.3 14.2 188 57-252 20-216 (250)
131 PRK04128 1-(5-phosphoribosyl)- 99.3 2.4E-12 5.2E-17 127.9 9.3 110 427-569 3-118 (228)
132 COG0042 tRNA-dihydrouridine sy 99.3 1.1E-11 2.5E-16 129.1 14.5 166 352-572 66-247 (323)
133 cd04727 pdxS PdxS is a subunit 99.3 8.6E-11 1.9E-15 117.3 16.7 177 310-559 18-232 (283)
134 PRK02083 imidazole glycerol ph 99.3 9.5E-12 2.1E-16 125.9 10.1 97 478-575 30-126 (253)
135 cd01740 GATase1_FGAR_AT Type 1 99.3 4.5E-11 9.7E-16 119.8 14.0 170 54-236 6-215 (238)
136 KOG2387 CTP synthase (UTP-ammo 99.3 1.6E-11 3.5E-16 126.9 10.2 84 48-137 299-409 (585)
137 PRK00278 trpC indole-3-glycero 99.2 7.1E-10 1.5E-14 112.5 19.7 185 306-568 69-256 (260)
138 cd04729 NanE N-acetylmannosami 99.2 2.1E-10 4.7E-15 113.5 15.3 188 303-560 23-214 (219)
139 TIGR00737 nifR3_yhdG putative 99.2 1.8E-10 3.8E-15 120.5 14.0 96 477-572 146-242 (319)
140 PRK10550 tRNA-dihydrouridine s 99.2 1.7E-10 3.7E-15 119.9 13.4 88 480-567 150-239 (312)
141 cd02801 DUS_like_FMN Dihydrour 99.2 1E-10 2.2E-15 116.4 11.2 89 479-567 139-228 (231)
142 TIGR00343 pyridoxal 5'-phospha 99.2 6.4E-10 1.4E-14 111.2 15.9 178 311-561 21-237 (287)
143 cd04723 HisA_HisF Phosphoribos 99.2 9.1E-11 2E-15 117.2 9.6 98 269-400 127-224 (233)
144 PF01207 Dus: Dihydrouridine s 99.2 4.8E-11 1E-15 124.1 7.7 87 478-564 138-225 (309)
145 PF13507 GATase_5: CobB/CobQ-l 99.2 1.4E-09 2.9E-14 109.8 17.3 176 47-236 1-229 (259)
146 PRK05368 homoserine O-succinyl 99.1 1.5E-09 3.2E-14 111.4 17.0 182 47-254 35-254 (302)
147 PRK13587 1-(5-phosphoribosyl)- 99.1 1.9E-10 4.2E-15 114.8 10.2 103 269-400 125-227 (234)
148 TIGR00007 phosphoribosylformim 99.1 3.5E-10 7.5E-15 112.8 10.4 105 469-574 16-123 (230)
149 PRK13585 1-(5-phosphoribosyl)- 99.1 4.6E-10 9.9E-15 112.7 11.3 104 269-401 126-229 (241)
150 PRK04180 pyridoxal biosynthesi 99.1 7.6E-10 1.6E-14 111.0 12.3 178 311-561 28-243 (293)
151 COG0106 HisA Phosphoribosylfor 99.1 4.4E-10 9.6E-15 110.2 10.3 103 269-400 124-227 (241)
152 KOG2335 tRNA-dihydrouridine sy 99.1 1E-09 2.2E-14 112.5 11.6 84 479-562 156-243 (358)
153 PRK14114 1-(5-phosphoribosyl)- 99.0 8.2E-10 1.8E-14 110.6 9.4 103 269-400 121-229 (241)
154 KOG1559 Gamma-glutamyl hydrola 99.0 1.2E-09 2.7E-14 105.2 9.8 182 45-236 50-271 (340)
155 cd04732 HisA HisA. Phosphorib 99.0 1.5E-09 3.2E-14 108.3 10.5 97 477-574 28-124 (234)
156 PF00977 His_biosynth: Histidi 99.0 1.1E-09 2.4E-14 109.1 9.4 102 269-399 123-225 (229)
157 PRK11815 tRNA-dihydrouridine s 99.0 1.2E-09 2.6E-14 114.8 10.0 91 479-571 152-252 (333)
158 PRK14024 phosphoribosyl isomer 99.0 2.1E-09 4.5E-14 108.0 10.8 92 479-572 33-124 (241)
159 TIGR00736 nifR3_rel_arch TIM-b 99.0 1.3E-08 2.8E-13 100.9 15.0 189 311-561 33-229 (231)
160 PLN02446 (5-phosphoribosyl)-5- 98.9 5.3E-09 1.2E-13 104.8 11.6 106 269-400 136-246 (262)
161 TIGR01857 FGAM-synthase phosph 98.9 2.4E-08 5.3E-13 118.5 18.9 195 43-249 973-1237(1239)
162 TIGR00742 yjbN tRNA dihydrouri 98.9 6.3E-09 1.4E-13 108.4 12.2 90 479-570 142-241 (318)
163 TIGR01919 hisA-trpF 1-(5-phosp 98.9 5.6E-09 1.2E-13 104.8 10.4 106 269-400 123-231 (243)
164 TIGR00734 hisAF_rel hisA/hisF 98.9 5.4E-09 1.2E-13 103.5 9.6 96 270-399 123-218 (221)
165 PRK13586 1-(5-phosphoribosyl)- 98.9 9.6E-09 2.1E-13 102.4 10.7 96 479-576 31-126 (232)
166 cd04722 TIM_phosphate_binding 98.9 7.7E-08 1.7E-12 92.0 16.2 186 307-553 12-200 (200)
167 PLN02274 inosine-5'-monophosph 98.8 8.4E-08 1.8E-12 105.8 16.8 190 307-561 182-389 (505)
168 TIGR03151 enACPred_II putative 98.8 5.1E-08 1.1E-12 101.3 13.3 185 307-571 23-211 (307)
169 PRK13957 indole-3-glycerol-pho 98.8 3E-07 6.5E-12 91.7 17.3 185 306-568 60-246 (247)
170 TIGR01037 pyrD_sub1_fam dihydr 98.8 3.4E-07 7.4E-12 95.0 18.2 95 479-574 170-289 (300)
171 PRK07259 dihydroorotate dehydr 98.7 2.1E-07 4.5E-12 96.6 15.7 95 479-574 170-289 (301)
172 PLN03206 phosphoribosylformylg 98.7 2.1E-07 4.6E-12 111.5 17.5 96 40-135 1030-1141(1307)
173 PLN02617 imidazole glycerol ph 98.7 2.8E-08 6.1E-13 109.9 9.3 97 479-576 268-390 (538)
174 TIGR01735 FGAM_synt phosphorib 98.7 2.1E-07 4.4E-12 112.3 17.1 182 44-235 1052-1279(1310)
175 cd04740 DHOD_1B_like Dihydroor 98.7 2.2E-07 4.7E-12 96.3 15.1 90 479-569 167-277 (296)
176 PRK09140 2-dehydro-3-deoxy-6-p 98.7 7.6E-07 1.6E-11 87.2 17.5 171 307-568 22-195 (206)
177 PRK05297 phosphoribosylformylg 98.7 3.4E-07 7.3E-12 110.8 18.1 93 44-136 1032-1140(1290)
178 PRK05458 guanosine 5'-monophos 98.7 3.9E-07 8.4E-12 94.7 14.9 138 358-557 87-235 (326)
179 cd02812 PcrB_like PcrB_like pr 98.7 4.8E-08 1E-12 95.8 7.5 77 307-400 132-210 (219)
180 PRK08318 dihydropyrimidine deh 98.7 5.2E-07 1.1E-11 98.0 16.0 95 479-574 181-309 (420)
181 cd02940 DHPD_FMN Dihydropyrimi 98.6 3.1E-07 6.8E-12 95.2 13.4 88 479-567 181-297 (299)
182 cd03146 GAT1_Peptidase_E Type 98.6 1.6E-07 3.4E-12 92.6 9.8 108 46-154 30-156 (212)
183 TIGR02129 hisA_euk phosphoribo 98.6 1.2E-07 2.5E-12 94.9 8.8 90 479-576 38-132 (253)
184 PRK06843 inosine 5-monophospha 98.6 2.5E-07 5.4E-12 98.5 11.7 126 376-557 154-290 (404)
185 cd02911 arch_FMN Archeal FMN-b 98.6 6.9E-07 1.5E-11 89.2 14.0 79 478-566 152-232 (233)
186 TIGR01302 IMP_dehydrog inosine 98.6 3.8E-07 8.1E-12 99.8 12.8 191 307-562 161-366 (450)
187 PRK00043 thiE thiamine-phospha 98.6 2.7E-06 6E-11 83.3 17.8 176 307-569 21-204 (212)
188 cd04730 NPD_like 2-Nitropropan 98.6 1.5E-06 3.2E-11 86.9 16.1 92 482-574 113-209 (236)
189 PRK05286 dihydroorotate dehydr 98.6 1.4E-06 3.1E-11 92.1 16.3 91 479-570 226-337 (344)
190 TIGR01163 rpe ribulose-phospha 98.6 3E-06 6.4E-11 83.0 17.2 189 308-568 12-208 (210)
191 cd02810 DHOD_DHPD_FMN Dihydroo 98.6 1.2E-06 2.6E-11 90.4 14.7 87 479-566 177-287 (289)
192 PRK07565 dihydroorotate dehydr 98.5 1.6E-06 3.4E-11 91.5 15.4 95 479-574 178-295 (334)
193 cd00452 KDPG_aldolase KDPG and 98.5 3.4E-06 7.3E-11 81.7 15.7 158 307-556 16-175 (190)
194 cd04739 DHOD_like Dihydroorota 98.5 2.7E-06 5.8E-11 89.3 15.5 95 479-574 176-293 (325)
195 PF00218 IGPS: Indole-3-glycer 98.5 2.9E-06 6.3E-11 85.3 14.7 183 306-566 67-252 (254)
196 TIGR01769 GGGP geranylgeranylg 98.5 3.6E-07 7.7E-12 89.0 7.5 67 312-394 139-205 (205)
197 PLN02334 ribulose-phosphate 3- 98.5 9E-06 1.9E-10 81.1 17.6 183 308-559 21-209 (229)
198 PRK05567 inosine 5'-monophosph 98.5 2.1E-06 4.6E-11 94.9 14.2 188 307-559 165-367 (486)
199 cd02803 OYE_like_FMN_family Ol 98.4 1.5E-06 3.4E-11 91.1 12.1 88 479-566 229-325 (327)
200 cd04726 KGPDC_HPS 3-Keto-L-gul 98.4 7.2E-06 1.6E-10 79.9 15.8 178 308-559 14-193 (202)
201 COG0134 TrpC Indole-3-glycerol 98.4 7.6E-06 1.7E-10 81.6 15.9 188 303-568 62-252 (254)
202 PTZ00314 inosine-5'-monophosph 98.4 3E-06 6.5E-11 93.5 14.4 188 307-559 178-380 (495)
203 cd04724 Tryptophan_synthase_al 98.4 4.2E-06 9.1E-11 84.1 14.0 185 308-556 15-219 (242)
204 cd00381 IMPDH IMPDH: The catal 98.4 3.7E-06 8E-11 88.1 14.0 128 377-559 96-233 (325)
205 PLN02460 indole-3-glycerol-pho 98.4 1.1E-05 2.4E-10 83.7 16.5 190 303-570 135-335 (338)
206 TIGR01306 GMP_reduct_2 guanosi 98.4 9.2E-06 2E-10 84.3 15.8 174 311-559 49-234 (321)
207 TIGR00693 thiE thiamine-phosph 98.4 1.7E-05 3.6E-10 77.0 16.9 171 307-560 13-188 (196)
208 cd02809 alpha_hydroxyacid_oxid 98.4 3E-06 6.4E-11 88.0 12.1 77 481-558 183-262 (299)
209 PRK08883 ribulose-phosphate 3- 98.4 1.8E-05 3.9E-10 78.3 17.0 181 307-559 9-202 (220)
210 cd00564 TMP_TenI Thiamine mono 98.4 1.7E-05 3.7E-10 76.3 16.5 168 307-560 12-186 (196)
211 PRK07807 inosine 5-monophospha 98.4 5.9E-06 1.3E-10 90.7 14.8 187 308-559 166-366 (479)
212 cd00429 RPE Ribulose-5-phospha 98.3 2.2E-05 4.8E-10 76.7 17.2 182 308-560 13-202 (211)
213 PRK07695 transcriptional regul 98.3 3.2E-05 6.9E-10 75.5 18.1 86 481-568 105-193 (201)
214 PRK04169 geranylgeranylglycery 98.3 1.3E-05 2.9E-10 79.5 15.3 196 308-560 20-221 (232)
215 PF00478 IMPDH: IMP dehydrogen 98.3 2.5E-06 5.5E-11 89.3 10.7 179 311-559 52-247 (352)
216 TIGR01768 GGGP-family geranylg 98.3 2.6E-06 5.6E-11 83.8 8.9 65 320-400 149-214 (223)
217 cd04728 ThiG Thiazole synthase 98.3 2.1E-06 4.6E-11 84.6 8.3 79 481-561 134-213 (248)
218 cd02812 PcrB_like PcrB_like pr 98.3 9.7E-06 2.1E-10 79.7 12.6 73 480-558 137-210 (219)
219 PRK13802 bifunctional indole-3 98.3 2.9E-05 6.4E-10 88.3 18.3 189 304-570 67-258 (695)
220 PRK07028 bifunctional hexulose 98.3 2E-05 4.3E-10 86.0 16.2 190 307-570 16-207 (430)
221 TIGR01305 GMP_reduct_1 guanosi 98.3 2.1E-05 4.6E-10 81.1 15.1 178 310-561 59-250 (343)
222 TIGR00259 thylakoid_BtpA membr 98.3 9.8E-05 2.1E-09 74.3 19.4 206 309-571 30-251 (257)
223 PRK05096 guanosine 5'-monophos 98.3 1.4E-05 3E-10 82.5 13.5 176 310-559 60-249 (346)
224 PF03437 BtpA: BtpA family; I 98.3 0.00013 2.8E-09 73.4 20.1 206 309-571 31-251 (254)
225 PRK04169 geranylgeranylglycery 98.2 4.4E-06 9.5E-11 82.9 9.1 78 308-401 138-220 (232)
226 cd04741 DHOD_1A_like Dihydroor 98.2 3.1E-05 6.8E-10 80.1 15.7 91 480-571 173-292 (294)
227 PRK00208 thiG thiazole synthas 98.2 4E-06 8.6E-11 82.8 8.3 78 481-560 134-212 (250)
228 PRK13523 NADPH dehydrogenase N 98.2 2.1E-05 4.6E-10 82.8 14.1 94 479-572 228-325 (337)
229 COG0352 ThiE Thiamine monophos 98.2 9.7E-05 2.1E-09 72.3 17.5 176 310-568 24-202 (211)
230 TIGR00262 trpA tryptophan synt 98.2 2.2E-05 4.7E-10 79.6 13.5 187 308-557 25-232 (256)
231 PRK02615 thiamine-phosphate py 98.2 6E-05 1.3E-09 79.3 17.1 178 308-568 158-338 (347)
232 PHA03366 FGAM-synthase; Provis 98.2 2E-05 4.2E-10 95.7 15.3 93 44-136 1025-1133(1304)
233 cd04738 DHOD_2_like Dihydrooro 98.2 4.2E-06 9.1E-11 87.9 8.5 89 479-568 217-326 (327)
234 TIGR01739 tegu_FGAM_synt herpe 98.2 1.4E-05 3E-10 96.5 13.8 95 42-136 924-1034(1202)
235 TIGR01769 GGGP geranylgeranylg 98.2 6.6E-05 1.4E-09 73.2 16.1 186 308-552 12-205 (205)
236 PRK08649 inosine 5-monophospha 98.2 1.1E-05 2.4E-10 85.6 11.3 75 307-394 141-215 (368)
237 cd04733 OYE_like_2_FMN Old yel 98.2 1.3E-05 2.7E-10 84.7 11.6 122 413-566 203-336 (338)
238 PRK13111 trpA tryptophan synth 98.2 2.3E-05 4.9E-10 79.4 12.9 186 308-557 27-233 (258)
239 TIGR01303 IMP_DH_rel_1 IMP deh 98.2 2.2E-05 4.8E-10 86.2 13.4 184 308-559 164-364 (475)
240 PRK07455 keto-hydroxyglutarate 98.2 8.2E-05 1.8E-09 71.9 15.9 161 307-558 24-186 (187)
241 PRK06552 keto-hydroxyglutarate 98.1 0.00015 3.3E-09 71.3 17.5 161 307-558 25-189 (213)
242 PRK05282 (alpha)-aspartyl dipe 98.1 2.1E-05 4.5E-10 78.4 11.3 90 47-137 31-130 (233)
243 TIGR01304 IMP_DH_rel_2 IMP deh 98.1 3E-05 6.5E-10 82.2 13.1 76 307-395 142-217 (369)
244 COG0269 SgbH 3-hexulose-6-phos 98.1 5.1E-05 1.1E-09 73.5 13.4 185 307-566 16-206 (217)
245 PRK07107 inosine 5-monophospha 98.1 4.8E-05 1E-09 84.1 15.0 185 307-557 180-386 (502)
246 PRK05581 ribulose-phosphate 3- 98.1 0.00015 3.2E-09 71.6 17.1 188 308-566 17-212 (220)
247 cd04734 OYE_like_3_FMN Old yel 98.1 3E-05 6.5E-10 82.0 12.7 88 479-566 229-329 (343)
248 PRK04302 triosephosphate isome 98.1 9.7E-05 2.1E-09 73.4 15.5 80 483-563 126-213 (223)
249 PRK06512 thiamine-phosphate py 98.1 0.00015 3.2E-09 72.0 16.5 177 308-566 27-206 (221)
250 PRK09427 bifunctional indole-3 98.1 0.0001 2.2E-09 80.3 16.8 187 304-570 67-256 (454)
251 PRK05718 keto-hydroxyglutarate 98.1 0.00016 3.5E-09 71.1 16.5 172 307-569 27-204 (212)
252 PF02581 TMP-TENI: Thiamine mo 98.1 6.6E-05 1.4E-09 72.0 13.6 166 307-555 12-180 (180)
253 TIGR03128 RuMP_HxlA 3-hexulose 98.1 0.00012 2.6E-09 71.6 15.6 162 343-570 40-203 (206)
254 cd02932 OYE_YqiM_FMN Old yello 98.1 4.2E-05 9.1E-10 80.7 13.2 147 379-564 159-332 (336)
255 PRK13125 trpA tryptophan synth 98.1 7.7E-05 1.7E-09 75.1 14.5 166 344-571 64-235 (244)
256 PRK03512 thiamine-phosphate py 98.0 0.00026 5.6E-09 69.7 17.1 180 308-570 20-204 (211)
257 cd01653 GATase1 Type 1 glutami 98.0 2.8E-05 6.2E-10 65.8 9.2 72 60-133 14-92 (115)
258 CHL00200 trpA tryptophan synth 98.0 7.7E-05 1.7E-09 75.7 13.3 186 308-556 30-235 (263)
259 cd02933 OYE_like_FMN Old yello 98.0 5.8E-05 1.2E-09 79.7 12.2 87 479-566 242-328 (338)
260 cd00405 PRAI Phosphoribosylant 98.0 0.00033 7.1E-09 68.5 16.5 181 311-571 10-202 (203)
261 COG1411 Uncharacterized protei 98.0 2.6E-05 5.7E-10 73.9 8.1 99 268-400 118-216 (229)
262 TIGR01182 eda Entner-Doudoroff 98.0 0.00031 6.8E-09 68.5 15.8 172 307-569 20-197 (204)
263 PLN02591 tryptophan synthase 97.9 0.00017 3.6E-09 72.7 14.1 185 309-556 18-222 (250)
264 TIGR01768 GGGP-family geranylg 97.9 0.0002 4.3E-09 70.6 14.2 192 308-558 15-214 (223)
265 cd03128 GAT_1 Type 1 glutamine 97.9 3.7E-05 8.1E-10 62.1 7.1 71 61-133 15-92 (92)
266 KOG1606 Stationary phase-induc 97.9 2.2E-05 4.7E-10 74.8 6.3 200 311-567 32-253 (296)
267 cd03144 GATase1_ScBLP_like Typ 97.9 2.2E-05 4.8E-10 69.2 5.4 72 59-133 14-90 (114)
268 PF03932 CutC: CutC family; I 97.9 0.00096 2.1E-08 64.9 17.1 175 311-547 11-194 (201)
269 cd02931 ER_like_FMN Enoate red 97.9 0.00024 5.3E-09 76.2 14.4 87 480-566 254-349 (382)
270 cd02930 DCR_FMN 2,4-dienoyl-Co 97.9 0.00032 7E-09 74.6 15.1 88 479-566 225-320 (353)
271 COG0434 SgcQ Predicted TIM-bar 97.8 0.0013 2.8E-08 64.4 17.2 206 309-571 36-256 (263)
272 PRK08745 ribulose-phosphate 3- 97.8 0.0015 3.2E-08 64.9 18.2 192 308-572 17-218 (223)
273 PF03060 NMO: Nitronate monoox 97.8 0.00011 2.4E-09 77.3 10.9 91 481-572 146-241 (330)
274 PRK13307 bifunctional formalde 97.8 0.00046 1E-08 73.7 15.3 151 343-561 214-367 (391)
275 COG0214 SNZ1 Pyridoxine biosyn 97.8 5E-05 1.1E-09 73.5 7.2 197 311-566 31-251 (296)
276 COG0159 TrpA Tryptophan syntha 97.8 0.00047 1E-08 69.4 14.2 186 308-556 32-237 (265)
277 PRK08005 epimerase; Validated 97.8 0.0013 2.7E-08 64.6 16.7 185 310-567 16-205 (210)
278 cd04747 OYE_like_5_FMN Old yel 97.8 0.00044 9.6E-09 73.5 14.7 87 480-566 237-342 (361)
279 cd04735 OYE_like_4_FMN Old yel 97.8 0.00038 8.1E-09 74.0 14.0 87 479-566 236-327 (353)
280 COG2070 Dioxygenases related t 97.8 8.3E-05 1.8E-09 78.2 8.7 92 480-572 136-235 (336)
281 PLN02898 HMP-P kinase/thiamin- 97.8 0.00084 1.8E-08 74.8 17.2 174 307-567 307-490 (502)
282 PLN02495 oxidoreductase, actin 97.8 0.00049 1.1E-08 73.5 14.6 95 479-574 195-326 (385)
283 cd02801 DUS_like_FMN Dihydrour 97.7 6.6E-05 1.4E-09 74.6 7.1 81 307-400 138-219 (231)
284 PF05690 ThiG: Thiazole biosyn 97.7 7.4E-05 1.6E-09 73.1 6.6 81 481-563 134-215 (247)
285 PRK08255 salicylyl-CoA 5-hydro 97.7 0.00028 6.1E-09 82.5 12.5 87 480-566 640-732 (765)
286 PLN02826 dihydroorotate dehydr 97.7 0.00013 2.8E-09 78.6 8.9 95 479-574 277-397 (409)
287 TIGR02708 L_lactate_ox L-lacta 97.7 0.00018 3.9E-09 76.2 9.8 76 481-557 239-317 (367)
288 COG1646 Predicted phosphate-bi 97.7 0.0009 1.9E-08 65.5 13.4 194 307-564 28-232 (240)
289 PF01884 PcrB: PcrB family; I 97.6 0.0001 2.2E-09 72.9 6.7 77 308-401 137-218 (230)
290 COG0167 PyrD Dihydroorotate de 97.6 0.00017 3.6E-09 74.5 8.5 96 479-575 174-298 (310)
291 cd04737 LOX_like_FMN L-Lactate 97.6 0.00021 4.5E-09 75.5 9.5 77 481-558 232-311 (351)
292 CHL00162 thiG thiamin biosynth 97.6 0.00016 3.4E-09 71.6 7.9 87 481-570 148-235 (267)
293 PRK06806 fructose-bisphosphate 97.6 0.0029 6.2E-08 65.0 17.5 212 309-571 31-247 (281)
294 PF01180 DHO_dh: Dihydroorotat 97.6 0.00018 3.9E-09 74.5 8.5 92 479-571 177-293 (295)
295 KOG2333 Uncharacterized conser 97.6 0.00015 3.2E-09 77.1 7.5 102 467-568 395-501 (614)
296 cd00958 DhnA Class I fructose- 97.6 0.00086 1.9E-08 67.0 12.8 78 483-570 148-231 (235)
297 PRK12290 thiE thiamine-phospha 97.6 0.0026 5.7E-08 68.3 16.9 172 307-561 217-401 (437)
298 PF00290 Trp_syntA: Tryptophan 97.6 0.0012 2.5E-08 66.9 13.3 184 310-557 27-231 (259)
299 TIGR01036 pyrD_sub2 dihydrooro 97.6 0.00019 4.1E-09 75.6 7.9 88 479-567 225-333 (335)
300 PTZ00170 D-ribulose-5-phosphat 97.6 0.002 4.3E-08 64.3 14.6 193 307-570 16-218 (228)
301 PRK02506 dihydroorotate dehydr 97.5 0.002 4.4E-08 67.2 15.3 63 511-574 228-297 (310)
302 PRK06801 hypothetical protein; 97.5 0.0068 1.5E-07 62.3 18.8 215 309-571 31-250 (286)
303 PRK11572 copper homeostasis pr 97.5 0.004 8.7E-08 62.2 16.5 176 311-549 12-195 (248)
304 PRK10415 tRNA-dihydrouridine s 97.5 0.00029 6.3E-09 73.9 8.9 91 307-422 149-240 (321)
305 PRK06015 keto-hydroxyglutarate 97.5 0.004 8.7E-08 60.6 15.8 171 307-568 16-192 (201)
306 cd04736 MDH_FMN Mandelate dehy 97.5 0.00043 9.3E-09 73.2 9.7 76 481-557 247-323 (361)
307 TIGR00736 nifR3_rel_arch TIM-b 97.5 0.00027 5.9E-09 70.3 7.6 79 307-401 148-227 (231)
308 TIGR01304 IMP_DH_rel_2 IMP deh 97.5 0.00042 9.1E-09 73.6 9.4 74 478-553 142-217 (369)
309 KOG2550 IMP dehydrogenase/GMP 97.5 0.00075 1.6E-08 70.6 10.9 140 356-557 239-388 (503)
310 PRK08999 hypothetical protein; 97.5 0.0021 4.6E-08 67.0 14.6 163 309-555 146-311 (312)
311 PRK08185 hypothetical protein; 97.5 0.0093 2E-07 61.2 18.8 210 308-570 25-244 (283)
312 cd04740 DHOD_1B_like Dihydroor 97.5 0.00049 1.1E-08 71.3 9.6 87 307-405 166-270 (296)
313 PRK07998 gatY putative fructos 97.5 0.0023 5.1E-08 65.5 14.0 208 310-570 32-245 (283)
314 cd00945 Aldolase_Class_I Class 97.5 0.006 1.3E-07 58.6 16.4 181 307-552 13-201 (201)
315 COG1646 Predicted phosphate-bi 97.5 0.00058 1.3E-08 66.8 9.0 50 339-401 178-227 (240)
316 PRK13957 indole-3-glycerol-pho 97.4 0.00077 1.7E-08 67.5 10.0 96 476-576 59-154 (247)
317 TIGR00737 nifR3_yhdG putative 97.4 0.00054 1.2E-08 71.8 9.3 91 308-423 148-239 (319)
318 PRK08091 ribulose-phosphate 3- 97.4 0.017 3.6E-07 57.4 18.9 190 308-571 26-225 (228)
319 TIGR01382 PfpI intracellular p 97.4 0.0006 1.3E-08 64.1 8.5 71 62-135 17-107 (166)
320 COG0036 Rpe Pentose-5-phosphat 97.4 0.0092 2E-07 58.4 16.7 190 307-569 16-213 (220)
321 PRK09722 allulose-6-phosphate 97.4 0.013 2.7E-07 58.4 18.1 188 311-570 19-216 (229)
322 TIGR00262 trpA tryptophan synt 97.4 0.00051 1.1E-08 69.7 8.3 81 308-399 151-232 (256)
323 TIGR03151 enACPred_II putative 97.4 0.001 2.2E-08 69.4 10.6 78 310-400 119-196 (307)
324 PRK11840 bifunctional sulfur c 97.4 0.0005 1.1E-08 70.9 8.2 80 481-563 208-289 (326)
325 cd02929 TMADH_HD_FMN Trimethyl 97.4 0.0016 3.5E-08 69.6 12.4 86 480-566 241-333 (370)
326 PRK14057 epimerase; Provisiona 97.4 0.013 2.8E-07 59.0 17.9 189 308-570 33-238 (254)
327 PRK05437 isopentenyl pyrophosp 97.4 0.0052 1.1E-07 65.3 16.0 75 481-558 200-296 (352)
328 TIGR01037 pyrD_sub1_fam dihydr 97.4 0.00064 1.4E-08 70.6 8.8 87 307-405 169-273 (300)
329 cd02803 OYE_like_FMN_family Ol 97.4 0.00058 1.3E-08 71.7 8.5 83 307-400 228-317 (327)
330 PF00834 Ribul_P_3_epim: Ribul 97.3 0.0016 3.6E-08 63.5 10.9 179 307-557 12-199 (201)
331 PRK07259 dihydroorotate dehydr 97.3 0.00083 1.8E-08 69.8 9.4 87 307-405 169-273 (301)
332 cd02811 IDI-2_FMN Isopentenyl- 97.3 0.00048 1E-08 72.4 7.7 76 481-559 192-291 (326)
333 TIGR01859 fruc_bis_ald_ fructo 97.3 0.0066 1.4E-07 62.4 15.3 212 309-570 29-246 (282)
334 PLN02535 glycolate oxidase 97.3 0.0011 2.3E-08 70.4 9.7 75 481-558 234-313 (364)
335 PF01081 Aldolase: KDPG and KH 97.3 0.003 6.4E-08 61.3 11.7 162 307-559 20-183 (196)
336 cd04730 NPD_like 2-Nitropropan 97.3 0.0021 4.6E-08 64.1 11.1 79 310-401 112-192 (236)
337 PF04131 NanE: Putative N-acet 97.3 0.00095 2.1E-08 63.6 8.0 77 310-399 102-178 (192)
338 cd04728 ThiG Thiazole synthase 97.3 0.0012 2.5E-08 65.5 8.8 77 307-399 132-209 (248)
339 PRK01130 N-acetylmannosamine-6 97.2 0.0011 2.4E-08 65.7 8.5 76 311-399 130-207 (221)
340 cd03169 GATase1_PfpI_1 Type 1 97.2 0.00062 1.3E-08 65.1 6.5 65 68-135 57-123 (180)
341 PRK07226 fructose-bisphosphate 97.2 0.0049 1.1E-07 62.9 13.4 71 481-560 163-239 (267)
342 TIGR01949 AroFGH_arch predicte 97.2 0.0034 7.4E-08 63.8 12.1 78 482-569 160-243 (258)
343 cd02940 DHPD_FMN Dihydropyrimi 97.2 0.00094 2E-08 69.4 8.1 93 307-421 180-297 (299)
344 KOG0623 Glutamine amidotransfe 97.2 0.0014 3E-08 66.8 8.7 97 479-576 270-393 (541)
345 cd03319 L-Ala-DL-Glu_epimerase 97.2 0.0033 7.1E-08 65.7 11.8 141 378-576 140-282 (316)
346 PRK08649 inosine 5-monophospha 97.2 0.0016 3.5E-08 69.3 9.5 75 478-554 141-217 (368)
347 TIGR02151 IPP_isom_2 isopenten 97.2 0.00078 1.7E-08 71.0 7.0 75 480-557 192-288 (333)
348 PRK00208 thiG thiazole synthas 97.2 0.0013 2.9E-08 65.2 8.1 76 307-399 132-209 (250)
349 cd03134 GATase1_PfpI_like A ty 97.2 0.0018 3.9E-08 60.7 8.8 71 62-135 17-109 (165)
350 cd04724 Tryptophan_synthase_al 97.2 0.0011 2.4E-08 66.7 7.7 81 307-399 139-220 (242)
351 cd03132 GATase1_catalase Type 97.2 0.0024 5.3E-08 58.4 9.5 86 49-136 3-111 (142)
352 cd03133 GATase1_ES1 Type 1 glu 97.2 0.0014 3.1E-08 64.5 8.3 53 84-136 81-141 (213)
353 CHL00200 trpA tryptophan synth 97.2 0.0012 2.7E-08 67.0 8.0 81 308-399 155-236 (263)
354 cd04738 DHOD_2_like Dihydrooro 97.2 0.001 2.2E-08 70.0 7.6 92 308-421 217-325 (327)
355 cd03129 GAT1_Peptidase_E_like 97.1 0.0022 4.7E-08 63.1 9.3 90 46-136 28-130 (210)
356 PF01884 PcrB: PcrB family; I 97.1 0.00021 4.5E-09 70.7 2.0 193 308-570 20-228 (230)
357 PRK07315 fructose-bisphosphate 97.1 0.015 3.1E-07 60.2 15.6 203 311-569 33-247 (293)
358 cd04739 DHOD_like Dihydroorota 97.1 0.0024 5.1E-08 67.2 9.8 88 307-405 175-277 (325)
359 PRK07114 keto-hydroxyglutarate 97.1 0.011 2.4E-07 58.5 13.8 162 307-558 27-194 (222)
360 PRK13111 trpA tryptophan synth 97.1 0.0014 3.1E-08 66.4 7.8 80 308-399 153-233 (258)
361 cd02911 arch_FMN Archeal FMN-b 97.1 0.0017 3.7E-08 65.0 8.2 71 307-396 152-222 (233)
362 PF04204 HTS: Homoserine O-suc 97.1 0.0094 2E-07 61.2 13.6 183 47-254 34-253 (298)
363 COG1902 NemA NADH:flavin oxido 97.1 0.0074 1.6E-07 64.2 13.4 89 479-567 238-333 (363)
364 COG2022 ThiG Uncharacterized e 97.1 0.0023 4.9E-08 62.4 8.6 81 481-563 141-222 (262)
365 PRK05848 nicotinate-nucleotide 97.1 0.0021 4.5E-08 65.6 8.8 68 481-559 192-264 (273)
366 PRK05286 dihydroorotate dehydr 97.1 0.00098 2.1E-08 70.6 6.7 87 308-405 226-329 (344)
367 cd04729 NanE N-acetylmannosami 97.1 0.0019 4E-08 64.0 8.2 75 312-399 135-211 (219)
368 PLN02591 tryptophan synthase 97.0 0.002 4.3E-08 65.0 8.1 81 308-399 142-223 (250)
369 PRK09517 multifunctional thiam 97.0 0.016 3.5E-07 67.7 16.8 176 308-566 20-208 (755)
370 cd03131 GATase1_HTS Type 1 glu 97.0 0.00074 1.6E-08 64.3 4.7 94 83-196 60-158 (175)
371 cd03147 GATase1_Ydr533c_like T 97.0 0.0023 5E-08 63.9 8.5 52 83-136 92-143 (231)
372 cd02810 DHOD_DHPD_FMN Dihydroo 97.0 0.0018 3.8E-08 66.8 7.6 82 308-400 177-278 (289)
373 cd02922 FCB2_FMN Flavocytochro 97.0 0.0035 7.7E-08 66.2 9.8 78 480-560 223-308 (344)
374 KOG2334 tRNA-dihydrouridine sy 97.0 0.002 4.4E-08 67.7 7.7 83 479-561 164-251 (477)
375 PRK11780 isoprenoid biosynthes 97.0 0.0032 6.9E-08 62.3 8.6 54 83-136 83-144 (217)
376 PRK08883 ribulose-phosphate 3- 96.9 0.0036 7.8E-08 62.0 8.7 81 307-400 116-201 (220)
377 PRK07565 dihydroorotate dehydr 96.9 0.0032 6.9E-08 66.4 8.9 88 307-405 177-279 (334)
378 cd03332 LMO_FMN L-Lactate 2-mo 96.9 0.0041 8.8E-08 66.5 9.5 74 481-557 264-342 (383)
379 PRK10605 N-ethylmaleimide redu 96.9 0.014 3.1E-07 62.2 13.6 85 480-566 251-335 (362)
380 PRK11815 tRNA-dihydrouridine s 96.9 0.0029 6.3E-08 66.7 8.0 91 308-422 152-249 (333)
381 PRK10550 tRNA-dihydrouridine s 96.9 0.0033 7.1E-08 65.6 8.3 80 308-400 149-230 (312)
382 cd04743 NPD_PKS 2-Nitropropane 96.9 0.0021 4.5E-08 66.8 6.7 77 481-559 113-209 (320)
383 PRK07709 fructose-bisphosphate 96.9 0.064 1.4E-06 55.2 17.4 207 311-570 33-249 (285)
384 cd04742 NPD_FabD 2-Nitropropan 96.9 0.0021 4.5E-08 69.2 6.8 90 481-572 166-270 (418)
385 PRK12737 gatY tagatose-bisphos 96.8 0.054 1.2E-06 55.7 16.7 211 309-570 31-248 (284)
386 PRK12738 kbaY tagatose-bisphos 96.8 0.07 1.5E-06 54.9 17.3 211 309-570 31-248 (286)
387 PRK09195 gatY tagatose-bisphos 96.8 0.075 1.6E-06 54.6 17.1 212 309-571 31-249 (284)
388 KOG4201 Anthranilate synthase 96.8 0.023 5E-07 54.8 12.2 185 304-563 88-277 (289)
389 PF03575 Peptidase_S51: Peptid 96.8 0.004 8.7E-08 58.1 7.2 94 60-154 2-111 (154)
390 cd03315 MLE_like Muconate lact 96.8 0.016 3.5E-07 59.0 12.2 143 377-576 90-234 (265)
391 cd03138 GATase1_AraC_2 AraC tr 96.7 0.0036 7.7E-08 60.5 6.9 55 81-135 65-119 (195)
392 PF09825 BPL_N: Biotin-protein 96.7 0.078 1.7E-06 56.3 17.3 65 71-137 30-99 (367)
393 cd03135 GATase1_DJ-1 Type 1 gl 96.7 0.0044 9.5E-08 57.8 7.3 50 84-135 59-108 (163)
394 cd00947 TBP_aldolase_IIB Tagat 96.7 0.08 1.7E-06 54.2 16.8 209 309-570 26-242 (276)
395 TIGR02814 pfaD_fam PfaD family 96.7 0.003 6.5E-08 68.4 6.8 90 481-572 171-275 (444)
396 PLN02334 ribulose-phosphate 3- 96.7 0.0097 2.1E-07 59.3 10.0 82 307-400 125-208 (229)
397 cd02932 OYE_YqiM_FMN Old yello 96.7 0.0049 1.1E-07 65.1 8.0 83 307-400 241-326 (336)
398 PRK08318 dihydropyrimidine deh 96.7 0.005 1.1E-07 67.0 8.3 88 307-405 180-293 (420)
399 cd03140 GATase1_PfpI_3 Type 1 96.7 0.0023 5E-08 60.6 4.9 49 84-136 59-107 (170)
400 PRK11197 lldD L-lactate dehydr 96.7 0.0089 1.9E-07 63.8 9.8 75 481-558 256-335 (381)
401 PF04481 DUF561: Protein of un 96.7 0.092 2E-06 51.1 15.6 178 308-557 28-219 (242)
402 cd00331 IGPS Indole-3-glycerol 96.6 0.0075 1.6E-07 59.5 8.7 94 477-575 30-123 (217)
403 TIGR01858 tag_bisphos_ald clas 96.6 0.1 2.2E-06 53.6 16.9 212 308-570 28-246 (282)
404 PF01116 F_bP_aldolase: Fructo 96.6 0.029 6.3E-07 57.8 12.8 214 309-572 30-253 (287)
405 PRK12857 fructose-1,6-bisphosp 96.6 0.11 2.3E-06 53.6 16.6 209 311-570 33-248 (284)
406 COG0693 ThiJ Putative intracel 96.6 0.012 2.5E-07 56.6 9.2 72 62-136 20-115 (188)
407 cd03137 GATase1_AraC_1 AraC tr 96.6 0.0037 8.1E-08 59.9 5.8 52 82-136 61-112 (187)
408 TIGR01383 not_thiJ DJ-1 family 96.5 0.0049 1.1E-07 58.6 6.3 52 83-136 61-112 (179)
409 PRK05835 fructose-bisphosphate 96.5 0.12 2.7E-06 53.5 16.9 210 309-569 30-270 (307)
410 PF01965 DJ-1_PfpI: DJ-1/PfpI 96.5 0.0017 3.6E-08 60.0 3.0 51 83-136 35-87 (147)
411 PRK08072 nicotinate-nucleotide 96.5 0.014 3E-07 59.8 9.8 67 481-558 198-266 (277)
412 TIGR00167 cbbA ketose-bisphosp 96.5 0.14 3E-06 52.8 17.1 210 310-570 32-252 (288)
413 cd00429 RPE Ribulose-5-phospha 96.5 0.012 2.6E-07 57.3 8.7 80 308-400 116-200 (211)
414 PRK04155 chaperone protein Hch 96.5 0.01 2.2E-07 61.2 8.4 51 84-136 146-196 (287)
415 PF01207 Dus: Dihydrouridine s 96.5 0.004 8.7E-08 65.0 5.5 82 307-401 138-220 (309)
416 PRK13125 trpA tryptophan synth 96.5 0.0094 2E-07 60.0 8.0 80 307-399 139-219 (244)
417 TIGR01521 FruBisAldo_II_B fruc 96.5 0.15 3.3E-06 53.6 17.0 218 309-570 29-291 (347)
418 cd01572 QPRTase Quinolinate ph 96.4 0.017 3.7E-07 59.0 9.7 67 481-558 192-260 (268)
419 cd04741 DHOD_1A_like Dihydroor 96.4 0.012 2.7E-07 60.9 8.7 84 308-402 172-280 (294)
420 PLN02979 glycolate oxidase 96.4 0.014 3E-07 61.6 8.9 76 481-557 234-312 (366)
421 cd04726 KGPDC_HPS 3-Keto-L-gul 96.4 0.017 3.7E-07 56.1 9.1 79 307-400 114-192 (202)
422 TIGR02317 prpB methylisocitrat 96.3 0.099 2.2E-06 53.8 14.7 190 308-558 22-235 (285)
423 PRK11320 prpB 2-methylisocitra 96.3 0.11 2.5E-06 53.5 15.1 189 308-557 26-239 (292)
424 PRK11574 oxidative-stress-resi 96.3 0.028 6.1E-07 54.3 10.1 86 48-135 3-114 (196)
425 COG3142 CutC Uncharacterized p 96.3 0.22 4.8E-06 48.9 15.9 177 311-549 12-197 (241)
426 TIGR02319 CPEP_Pphonmut carbox 96.3 0.11 2.3E-06 53.8 14.6 205 307-573 24-255 (294)
427 PRK09196 fructose-1,6-bisphosp 96.3 0.19 4.2E-06 52.9 16.6 222 310-570 32-293 (347)
428 cd02930 DCR_FMN 2,4-dienoyl-Co 96.3 0.011 2.5E-07 62.7 7.7 92 307-421 224-321 (353)
429 PLN02826 dihydroorotate dehydr 96.3 0.02 4.3E-07 61.9 9.6 87 308-405 277-381 (409)
430 KOG3111 D-ribulose-5-phosphate 96.2 0.19 4.1E-06 48.0 14.6 194 306-571 16-215 (224)
431 PRK08610 fructose-bisphosphate 96.2 0.051 1.1E-06 55.8 11.9 195 310-555 32-236 (286)
432 PRK05742 nicotinate-nucleotide 96.2 0.029 6.4E-07 57.4 10.1 68 481-559 199-268 (277)
433 TIGR00078 nadC nicotinate-nucl 96.2 0.032 7E-07 56.9 10.3 68 481-559 188-257 (265)
434 PF05690 ThiG: Thiazole biosyn 96.2 0.027 5.9E-07 55.4 9.1 79 307-400 132-210 (247)
435 PRK13523 NADPH dehydrogenase N 96.2 0.017 3.6E-07 61.0 8.3 95 307-425 227-324 (337)
436 KOG2335 tRNA-dihydrouridine sy 96.1 0.021 4.5E-07 59.5 8.4 101 307-419 155-259 (358)
437 TIGR00742 yjbN tRNA dihydrouri 96.1 0.021 4.5E-07 59.9 8.5 92 307-422 141-239 (318)
438 PF13278 DUF4066: Putative ami 96.1 0.0097 2.1E-07 55.9 5.6 53 81-136 57-109 (166)
439 PLN02493 probable peroxisomal 96.1 0.024 5.1E-07 60.2 8.9 76 481-557 235-313 (367)
440 TIGR01163 rpe ribulose-phospha 96.1 0.031 6.8E-07 54.5 9.3 80 308-400 115-199 (210)
441 PRK01222 N-(5'-phosphoribosyl) 96.1 0.41 8.9E-06 47.1 17.0 186 308-571 12-204 (210)
442 cd01573 modD_like ModD; Quinol 96.0 0.018 4E-07 58.9 7.7 73 482-562 194-268 (272)
443 PF03060 NMO: Nitronate monoox 96.0 0.015 3.3E-07 61.2 7.3 80 307-400 144-225 (330)
444 cd04735 OYE_like_4_FMN Old yel 96.0 0.016 3.6E-07 61.6 7.6 104 307-434 235-340 (353)
445 cd01568 QPRTase_NadC Quinolina 96.0 0.028 6.1E-07 57.4 9.0 66 482-558 192-261 (269)
446 TIGR01036 pyrD_sub2 dihydrooro 96.0 0.011 2.4E-07 62.3 6.1 82 308-400 225-323 (335)
447 cd03321 mandelate_racemase Man 96.0 0.063 1.4E-06 57.1 11.9 159 355-576 131-291 (355)
448 cd03136 GATase1_AraC_ArgR_like 96.0 0.013 2.7E-07 56.2 5.9 50 82-135 61-110 (185)
449 cd03316 MR_like Mandelate race 96.0 0.055 1.2E-06 57.5 11.4 148 377-576 144-294 (357)
450 cd04734 OYE_like_3_FMN Old yel 96.0 0.023 5E-07 60.2 8.4 92 307-421 228-330 (343)
451 cd00377 ICL_PEPM Members of th 96.0 0.23 5E-06 50.0 15.1 191 308-558 18-232 (243)
452 COG0042 tRNA-dihydrouridine sy 96.0 0.021 4.6E-07 59.9 7.9 80 308-400 153-234 (323)
453 CHL00162 thiG thiamin biosynth 96.0 0.033 7.2E-07 55.5 8.6 79 307-400 146-224 (267)
454 PRK07084 fructose-bisphosphate 95.9 0.11 2.5E-06 54.0 12.9 176 344-570 73-284 (321)
455 PRK05581 ribulose-phosphate 3- 95.9 0.035 7.6E-07 54.6 8.9 80 308-400 120-204 (220)
456 PRK13398 3-deoxy-7-phosphohept 95.9 0.31 6.7E-06 49.7 15.8 196 307-571 41-258 (266)
457 PF00290 Trp_syntA: Tryptophan 95.9 0.031 6.7E-07 56.6 8.4 82 307-400 150-232 (259)
458 PRK08091 ribulose-phosphate 3- 95.9 0.06 1.3E-06 53.5 10.2 81 307-400 128-213 (228)
459 KOG1907 Phosphoribosylformylgl 95.9 0.092 2E-06 60.1 12.6 92 45-136 1056-1163(1320)
460 cd03139 GATase1_PfpI_2 Type 1 95.8 0.013 2.9E-07 55.7 5.3 50 83-135 60-109 (183)
461 cd02809 alpha_hydroxyacid_oxid 95.8 0.026 5.7E-07 58.6 7.8 77 310-399 183-261 (299)
462 PRK13958 N-(5'-phosphoribosyl) 95.7 0.73 1.6E-05 45.2 17.2 185 311-571 12-202 (207)
463 PRK04302 triosephosphate isome 95.7 0.037 7.9E-07 55.0 8.1 79 311-400 125-208 (223)
464 cd04722 TIM_phosphate_binding 95.7 0.026 5.7E-07 53.5 6.9 69 316-395 132-200 (200)
465 cd03145 GAT1_cyanophycinase Ty 95.7 0.051 1.1E-06 53.7 9.1 90 46-136 28-133 (217)
466 KOG1436 Dihydroorotate dehydro 95.7 0.054 1.2E-06 55.3 9.1 90 479-569 267-378 (398)
467 PRK13399 fructose-1,6-bisphosp 95.7 0.1 2.3E-06 54.9 11.7 208 311-555 33-280 (347)
468 cd03141 GATase1_Hsp31_like Typ 95.7 0.0094 2E-07 59.1 3.8 52 83-136 88-139 (221)
469 cd04733 OYE_like_2_FMN Old yel 95.7 0.038 8.3E-07 58.4 8.6 81 307-400 236-328 (338)
470 cd00564 TMP_TenI Thiamine mono 95.7 0.057 1.2E-06 51.6 9.1 80 308-400 104-184 (196)
471 COG0167 PyrD Dihydroorotate de 95.7 0.031 6.6E-07 58.0 7.4 90 305-405 171-281 (310)
472 cd04736 MDH_FMN Mandelate dehy 95.7 0.032 7E-07 59.1 7.7 76 311-399 248-323 (361)
473 COG3340 PepE Peptidase E [Amin 95.6 0.041 8.8E-07 53.5 7.6 78 59-137 50-135 (224)
474 PRK07428 nicotinate-nucleotide 95.6 0.055 1.2E-06 55.7 9.2 68 481-559 206-278 (288)
475 COG2070 Dioxygenases related t 95.6 0.024 5.2E-07 59.8 6.5 77 311-400 138-219 (336)
476 cd02931 ER_like_FMN Enoate red 95.6 0.047 1E-06 58.7 8.8 92 307-421 252-350 (382)
477 PRK08745 ribulose-phosphate 3- 95.5 0.096 2.1E-06 52.0 10.1 80 307-400 120-205 (223)
478 PF01070 FMN_dh: FMN-dependent 95.5 0.023 4.9E-07 60.5 6.0 77 481-558 236-315 (356)
479 cd02808 GltS_FMN Glutamate syn 95.5 0.041 8.9E-07 59.4 8.0 78 479-557 226-319 (392)
480 PRK14057 epimerase; Provisiona 95.5 0.084 1.8E-06 53.2 9.6 81 307-400 142-227 (254)
481 TIGR02320 PEP_mutase phosphoen 95.5 0.47 1E-05 48.9 15.3 185 313-557 22-245 (285)
482 PRK00230 orotidine 5'-phosphat 95.5 0.2 4.2E-06 50.1 12.2 198 308-571 13-226 (230)
483 COG0159 TrpA Tryptophan syntha 95.5 0.046 1E-06 55.2 7.6 82 307-400 157-239 (265)
484 cd03148 GATase1_EcHsp31_like T 95.4 0.019 4E-07 57.5 4.8 52 83-136 94-145 (232)
485 cd04737 LOX_like_FMN L-Lactate 95.4 0.048 1E-06 57.8 8.0 76 311-399 233-310 (351)
486 PRK08005 epimerase; Validated 95.4 0.095 2E-06 51.5 9.5 81 307-400 116-197 (210)
487 PRK00507 deoxyribose-phosphate 95.4 0.34 7.3E-06 48.1 13.4 66 480-549 138-205 (221)
488 PF00724 Oxidored_FMN: NADH:fl 95.4 0.02 4.4E-07 60.5 5.1 86 481-566 239-335 (341)
489 TIGR00381 cdhD CO dehydrogenas 95.4 0.31 6.7E-06 51.7 13.6 100 307-425 139-241 (389)
490 PRK00043 thiE thiamine-phospha 95.3 0.082 1.8E-06 51.6 8.8 80 307-400 112-194 (212)
491 cd04727 pdxS PdxS is a subunit 95.3 0.11 2.3E-06 52.9 9.5 49 340-399 180-230 (283)
492 PRK07695 transcriptional regul 95.3 0.099 2.2E-06 50.9 9.2 76 310-399 105-182 (201)
493 COG0036 Rpe Pentose-5-phosphat 95.2 0.11 2.4E-06 50.9 9.3 82 306-400 118-203 (220)
494 KOG2764 Putative transcription 95.2 0.058 1.3E-06 52.8 7.2 65 64-130 25-110 (247)
495 PRK09722 allulose-6-phosphate 95.2 0.12 2.6E-06 51.5 9.5 80 307-399 118-203 (229)
496 PRK11249 katE hydroperoxidase 95.2 0.088 1.9E-06 60.7 9.6 89 46-136 596-707 (752)
497 PLN02274 inosine-5'-monophosph 95.2 0.051 1.1E-06 60.5 7.6 78 310-399 300-385 (505)
498 TIGR01334 modD putative molybd 95.1 0.081 1.8E-06 54.2 8.4 72 480-562 197-273 (277)
499 TIGR02708 L_lactate_ox L-lacta 95.1 0.058 1.3E-06 57.4 7.6 77 310-399 239-317 (367)
500 cd02933 OYE_like_FMN Old yello 95.1 0.069 1.5E-06 56.5 8.2 87 308-421 242-329 (338)
No 1
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=100.00 E-value=5.4e-95 Score=790.94 Aligned_cols=533 Identities=84% Similarity=1.324 Sum_probs=472.7
Q ss_pred CCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEE
Q 045794 46 SDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLG 125 (578)
Q Consensus 46 ~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlG 125 (578)
..++|+|+||++||..++.++|+++|+++.+++.++++.++|+|||||++++...+.++...++.+.|+++++.++|+||
T Consensus 5 ~~~~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~~~~l~~~D~lIlpG~gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLG 84 (538)
T PLN02617 5 ADSEVTLLDYGAGNVRSVRNAIRHLGFTIKDVQTPEDILNADRLIFPGVGAFGSAMDVLNNRGMAEALREYIQNDRPFLG 84 (538)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHCCCeEEEECChhhhccCCEEEECCCCCHHHHHHHHHHcCHHHHHHHHHHcCCCEEE
Confidence 45679999999999999999999999999999988889999999999999887777777766788999999999999999
Q ss_pred EechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCC
Q 045794 126 ICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKE 205 (578)
Q Consensus 126 IClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~ 205 (578)
||+|||+|+.++.|++...|+|++++++.++........|++||+.+....+++++.+++...+|++|++++...+....
T Consensus 85 IC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~~V~~~~~spL~~~l~~~~vy~vHSy~v~~~p~~~~ 164 (538)
T PLN02617 85 ICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQITKDSELLDGVGGRHVYFVHSYRATPSDENKD 164 (538)
T ss_pred ECHHHHHHhhhhhhcCCccCcccccceEEECCccCCCCCCeecceEEEecCCChhHhcCCCcEEEEEeEEEEEecCCCCc
Confidence 99999999998777667889999999998874332356789999999998888999888777889999999766555445
Q ss_pred cEEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccCCCCCCC-cccccccceeEEEeeeEeecCCCCE
Q 045794 206 WVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPT-EGKALKLAKRVIACLDVRANDKGDL 284 (578)
Q Consensus 206 ~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~~~~~~-~~~~~~~~~riIp~iDl~~~~~g~~ 284 (578)
++.++..++++++++++++++||+|||||.+...+..+|++|++.+.......+ ..+...+++|||||||++.+++|..
T Consensus 165 ~v~a~~~~g~~~IaAI~~gnI~GVQFHPE~s~~~G~~L~~nFl~~~~~~~~~~~~~~~~~~l~~riip~l~v~~~~~g~~ 244 (538)
T PLN02617 165 WVLATCNYGGEFIASVRKGNVHAVQFHPEKSGATGLSILRRFLEPKSSATQKPTEGKASKSLAKRVIACLDVRSNDKGDL 244 (538)
T ss_pred EEEEEEccCCCcEEEEEeCCEEEEEcCCccCchhHHHHHHHHHHhhhhhhcCccccccccCccceEEEEEEeecCCCCce
Confidence 566677777789999999999999999999877888999999988875533211 1223678899999999995433777
Q ss_pred EEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCcc
Q 045794 285 VVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIR 364 (578)
Q Consensus 285 v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir 364 (578)
|+|||.+|++|+.......++.+||+++|++|+++||||||++||++++.+...+..++++|+++++++++|+++|||||
T Consensus 245 ~v~kg~~f~~~~~~~~~~~~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr 324 (538)
T PLN02617 245 VVTKGDQYDVREHSEGREVRNLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIR 324 (538)
T ss_pred EEeecccccccccccccCCCcCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCcc
Confidence 79999999888876555778899999999999999999999999999876666778899999999999999999999999
Q ss_pred ccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCc
Q 045794 365 DFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPND 444 (578)
Q Consensus 365 ~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~ 444 (578)
++||+||+-+|.+|+++++|++|||||+|||+|++++++|+..++++||+++++++++||+|+|++|||+|++++..|..
T Consensus 325 ~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~ 404 (538)
T PLN02617 325 DFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSD 404 (538)
T ss_pred ccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccc
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999875433444
Q ss_pred cccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCc
Q 045794 445 VEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIP 524 (578)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ip 524 (578)
..+.++++.+.+++|+.+.||+|+++||++.+++++++|+++++++|+++|++|++++|||++|+|+++++.+++.+++|
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G~d~~l~~~v~~~~~ip 484 (538)
T PLN02617 405 VPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIELVKLVSDAVTIP 484 (538)
T ss_pred cccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeeccccccccCcCHHHHHHHHhhCCCC
Confidence 45556666665666766778999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeecC
Q 045794 525 VIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578 (578)
Q Consensus 525 VIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~~ 578 (578)
||||||+++++|+.++++..|+++++.|+.||++++++.++|++|+++||+||+
T Consensus 485 viasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~vr~ 538 (538)
T PLN02617 485 VIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIETRI 538 (538)
T ss_pred EEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHHCCCccCC
Confidence 999999999999999998788999999999999999999999999999999985
No 2
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-87 Score=661.25 Aligned_cols=530 Identities=70% Similarity=1.172 Sum_probs=494.9
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
++|.++||+.||..++..+|+.+|+++..+..+.|+.+.|-+|+||-+++.+.++.+...++.+.|+++++.++|++|||
T Consensus 2 ~vv~~ld~~agn~~si~nal~hlg~~i~~v~~P~DI~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgic 81 (541)
T KOG0623|consen 2 SVVTLLDYGAGNVRSIRNALRHLGFSIKDVQTPGDILNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGIC 81 (541)
T ss_pred ceEEEEecCCccHHHHHHHHHhcCceeeeccCchhhccCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcCCCeEeeh
Confidence 46889999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCC---CCC
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSD---DNK 204 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~---~~~ 204 (578)
.|+|+|-..+.|+....|||++|+.+.+|+.. ...+||+||+...+..++.+|...+.-+.|++|+|.....+ ++.
T Consensus 82 vGlQaLF~gSvE~p~skGLgvipg~v~RFD~s-~k~VPhIGWNsc~v~sd~effg~~p~~~~YFVHSyl~~ek~~~len~ 160 (541)
T KOG0623|consen 82 VGLQALFDGSVENPPSKGLGVIPGIVGRFDAS-AKIVPHIGWNSCQVGSDSEFFGDVPNRHVYFVHSYLNREKPKSLENK 160 (541)
T ss_pred hhHHHHhcccccCCCcCcccccccceecccCC-CCcCCcccccccccCCcccccccCCCceEEEEeeecccccccCCCCC
Confidence 99999999888888889999999999999876 45589999999988888888877778899999999654433 345
Q ss_pred CcEEEEeecCC-ceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccCC-----CCCCCcccccccceeEEEeeeEee
Q 045794 205 EWVSSTCNYGD-NFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNI-----PKKPTEGKALKLAKRVIACLDVRA 278 (578)
Q Consensus 205 ~~~~~~~~~~d-~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~-----~~~~~~~~~~~~~~riIp~iDl~~ 278 (578)
.|..++.+++. .++.+++..|++++|||||.++..++..+++|+.+-.-. +.++.+++...+.+|||.|+|++.
T Consensus 161 ~wkiat~kYG~E~Fi~ai~knN~~AtQFHPEKSG~aGL~vl~~FL~~~~ppips~e~~kl~en~~sgLtkRiIACLDVRt 240 (541)
T KOG0623|consen 161 DWKIATCKYGSESFISAIRKNNVHATQFHPEKSGEAGLSVLRRFLHQQSPPIPSAETQKLMENKASGLTKRIIACLDVRT 240 (541)
T ss_pred CceEeeeccCcHHHHHHHhcCceeeEecccccccchhHHHHHHHHhccCCCCCchhhhhhhhccchhhhhhheeeeeeec
Confidence 68889988874 778888889999999999999999999999999833211 223345666678899999999999
Q ss_pred cCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEE
Q 045794 279 NDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLT 358 (578)
Q Consensus 279 ~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~ 358 (578)
||.|.+|++||+++++|+-...+++++.+.|+++|++|++.||||+.++++..+++++.+..++++++++.++.+++|++
T Consensus 241 ND~GDLVVTKGDQYDVREkS~g~eVRNLGKPV~Laq~Yyq~GADEv~FLNITsFRdcPl~D~PMlqVL~qaaktVFVPLT 320 (541)
T KOG0623|consen 241 NDKGDLVVTKGDQYDVREKSNGNEVRNLGKPVDLAQQYYQDGADEVSFLNITSFRDCPLGDLPMLQVLRQAAKTVFVPLT 320 (541)
T ss_pred cCCCceEEecCcccchhhccCchhhhccCChHHHHHHHHhcCCceeEEEeeccccCCCcccChHHHHHHHhhceEEEEEe
Confidence 99999999999999999888788999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhcccc-CCchHHHHHHHhCCCCeEEEEEecccc
Q 045794 359 VGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVK-TGKSSLEQISRVYGNQAVVVSIDPRRV 437 (578)
Q Consensus 359 ~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~iv~slD~~~~ 437 (578)
+|||||++.|++|+-+|++|.+..|+..|||+|.|||.++...++|.+.|++ ++...|+.|++.||.|++++|+|.|+.
T Consensus 321 VGGGIrD~~D~dGt~~palEVA~~YFRSGADKvSIGsDAVyAAEkyye~G~k~~Gks~iEtISkaYGnQAVViSvDPkRv 400 (541)
T KOG0623|consen 321 VGGGIRDFTDADGTYYPALEVAAEYFRSGADKVSIGSDAVYAAEKYYESGVKGTGKSSIETISKAYGNQAVVISVDPKRV 400 (541)
T ss_pred ecCcccccccCCCcCchhHHHHHHHHhcCCceeeechhHHHHHHHHHHhccCCCCcChHHHHHHHhCCeeEEEEeCCcee
Confidence 9999999999999999999999999999999999999999988889999999 999999999999999999999999999
Q ss_pred ccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 045794 438 YITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLI 517 (578)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l 517 (578)
++.||.|..++.++++..||||++|+||+++++|+++..+++.+|+.+.++++|+++|+++.|+.||..+|+|+++++.+
T Consensus 401 YVn~p~Dtk~kV~~t~~pGPNGE~YcWYQCTvkGGRE~Rdigv~ELtrAcEalGAGEiLLNCiD~DGsn~GyDieLv~lv 480 (541)
T KOG0623|consen 401 YVNHPDDTKYKVIRTTNPGPNGEEYCWYQCTVKGGREGRDIGVFELTRACEALGAGEILLNCIDCDGSNKGYDIELVKLV 480 (541)
T ss_pred eecCCccCcceEEEecCCCCCCceeEEEEEEEcCCcccCccchhhHHHHHHHhCcchheeeeeccCCCCCCcchhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeecC
Q 045794 518 SDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578 (578)
Q Consensus 518 ~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~~ 578 (578)
+..++||||||.|.+.++++.++++++.|++++.+-+||.++.+++++|++|...+|.||+
T Consensus 481 kdsV~IPVIASSGAG~P~HFeEvF~kT~adAaLaAGiFHR~e~~i~dVKEyL~eh~i~VR~ 541 (541)
T KOG0623|consen 481 KDSVGIPVIASSGAGTPDHFEEVFEKTNADAALAAGIFHRKEVPIQDVKEYLQEHRIEVRI 541 (541)
T ss_pred hcccCCceEecCCCCCcHHHHHHHHhcCchhhhhccceecCccchHHHHHHHHhhceeecC
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 3
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-59 Score=445.65 Aligned_cols=255 Identities=51% Similarity=0.837 Sum_probs=241.3
Q ss_pred ccceeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHH
Q 045794 265 KLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQ 344 (578)
Q Consensus 265 ~~~~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~ 344 (578)
|+.+|||||||++ +|+ +|||.+|. ..++.|||+++|++|+++|||||.|+|+++..+ ++..+++
T Consensus 1 mL~kRIIPCLDVk---~Gr--VVKGv~F~--------~lrd~GDpVelA~~Y~e~GADElvFlDItAs~~---gr~~~~~ 64 (256)
T COG0107 1 MLAKRIIPCLDVK---DGR--VVKGVNFK--------NLRDAGDPVELAKRYNEEGADELVFLDITASSE---GRETMLD 64 (256)
T ss_pred CCcceeEeeEEcc---CCE--EEeccccc--------chhhcCChHHHHHHHHHcCCCeEEEEecccccc---cchhHHH
Confidence 7899999999999 896 67999987 888899999999999999999999999999744 5688999
Q ss_pred HHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCC
Q 045794 345 VLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG 424 (578)
Q Consensus 345 ~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (578)
+|++.++.+++|++||||||++|| ++++|.+|||||.|+|+|+.+ |+++.+++++||
T Consensus 65 vv~r~A~~vfiPltVGGGI~s~eD-----------~~~ll~aGADKVSINsaAv~~------------p~lI~~~a~~FG 121 (256)
T COG0107 65 VVERVAEQVFIPLTVGGGIRSVED-----------ARKLLRAGADKVSINSAAVKD------------PELITEAADRFG 121 (256)
T ss_pred HHHHHHhhceeeeEecCCcCCHHH-----------HHHHHHcCCCeeeeChhHhcC------------hHHHHHHHHHhC
Confidence 999999999999999999999987 999999999999999999995 589999999999
Q ss_pred CCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 425 NQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 425 ~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
+||||+|||+|+.+ +| ++.||+|+++|+++.+++++++|+++++++|++||++|.+++||
T Consensus 122 sQciVvaIDakr~~-------------------~g-~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DG 181 (256)
T COG0107 122 SQCIVVAIDAKRVP-------------------DG-ENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDG 181 (256)
T ss_pred CceEEEEEEeeecc-------------------CC-CCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccc
Confidence 99999999999852 24 35789999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeecC
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~~ 578 (578)
+.+|+|+++++.+++.+++|||||||.++++|+.+++.+..+++++.+|.||++++++.++|+||.++||+||+
T Consensus 182 tk~GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~~~i~evK~yL~~~gi~VR~ 255 (256)
T COG0107 182 TKAGYDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGEITIGEVKEYLAEQGIEVRL 255 (256)
T ss_pred cccCcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCcccHHHHHHHHHHcCCCccc
Confidence 99999999999999999999999999999999999998677999999999999999999999999999999985
No 4
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-52 Score=401.93 Aligned_cols=237 Identities=26% Similarity=0.469 Sum_probs=220.5
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
|.||||||++ +|+|| +++|++ + +...+..||+++|+.|.++||+++|++|||++..+ ...|.++|
T Consensus 2 ~~iiPAIDl~---~G~~VRL~qGd~-~-------~~~~y~~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g---~~~n~~~i 67 (241)
T COG0106 2 MIIIPAIDLK---DGKVVRLVQGDY-G-------KETVYSDDPLEVAKKWSDQGAEWLHLVDLDGAKAG---GPRNLEAI 67 (241)
T ss_pred ceEEEeEEee---CCEEEEeecccC-C-------cceEecCCHHHHHHHHHHcCCcEEEEeeccccccC---CcccHHHH
Confidence 6899999999 99999 999987 3 35567789999999999999999999999998754 36689999
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
++|.+++++|||+||||||.++ ++.|+++|++||++||.++++ |++++++.++|| +
T Consensus 68 ~~i~~~~~~~vQvGGGIRs~~~-----------v~~ll~~G~~rViiGt~av~~------------p~~v~~~~~~~g-~ 123 (241)
T COG0106 68 KEILEATDVPVQVGGGIRSLED-----------VEALLDAGVARVIIGTAAVKN------------PDLVKELCEEYG-D 123 (241)
T ss_pred HHHHHhCCCCEEeeCCcCCHHH-----------HHHHHHCCCCEEEEecceecC------------HHHHHHHHHHcC-C
Confidence 9999999999999999999876 999999999999999999995 478899999999 8
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
+|+++||+|.+ ++.++||++.+++++.++++++++.|+.+||+|||++|||+
T Consensus 124 rivv~lD~r~g----------------------------~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl 175 (241)
T COG0106 124 RIVVALDARDG----------------------------KVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTL 175 (241)
T ss_pred cEEEEEEccCC----------------------------ccccccccccccCCHHHHHHHHHhcCCCeEEEEeccccccc
Confidence 99999999985 46799999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc-CchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT-NASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~-G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
+|+|+++++++++.+++|||+||||+|.+|++.+.+ . |+.|+++|+|+|.+.+++.++.++...
T Consensus 176 ~G~n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~-~~G~~GvIvG~ALy~g~~~l~ea~~~~~~ 240 (241)
T COG0106 176 SGPNVDLVKELAEAVDIPVIASGGVSSLDDIKALKE-LSGVEGVIVGRALYEGKFTLEEALACVRN 240 (241)
T ss_pred CCCCHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHh-cCCCcEEEEehHHhcCCCCHHHHHHHHhc
Confidence 999999999999999999999999999999999985 7 899999999999999999998887654
No 5
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=100.00 E-value=3.8e-50 Score=400.01 Aligned_cols=234 Identities=21% Similarity=0.300 Sum_probs=214.8
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
|+|||||||+ +|+|| +++|+++. ..++.+||+++|+.|+++|++++||+|||++.. ++..|.++|
T Consensus 1 M~IIPaIDl~---~Gk~Vrl~~G~~~~--------~~~~~~dP~~~A~~~~~~ga~~lhivDLd~a~~---g~~~n~~~i 66 (241)
T PRK14114 1 MLVVPAIDLF---RGKVARMVKGKKEN--------TIFYEKDPAELVEKLIEEGFTLIHVVDLSKAIE---NSVENLPVL 66 (241)
T ss_pred CEEEEEEEEE---CCEEEEeeccccCc--------ceEECCCHHHHHHHHHHCCCCEEEEEECCCccc---CCcchHHHH
Confidence 5899999999 99999 99999865 446678999999999999999999999998654 346789999
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
++|++.+ .|+|+||||||++| +++++++||++|+|||+++++ |++++++ ++||++
T Consensus 67 ~~i~~~~-~~v~vGGGIrs~e~-----------~~~~l~~Ga~rvvigT~a~~~------------p~~l~~~-~~~~~~ 121 (241)
T PRK14114 67 EKLSEFA-EHIQIGGGIRSLDY-----------AEKLRKLGYRRQIVSSKVLED------------PSFLKFL-KEIDVE 121 (241)
T ss_pred HHHHhhc-CcEEEecCCCCHHH-----------HHHHHHCCCCEEEECchhhCC------------HHHHHHH-HHhCCC
Confidence 9999988 79999999999977 999999999999999999995 4778999 569865
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
+++|||+|++ ++.++||.+.+++++.+++++++++|++++|+||+++|||+
T Consensus 122 -ivvslD~k~g----------------------------~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~ 172 (241)
T PRK14114 122 -PVFSLDTRGG----------------------------KVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTL 172 (241)
T ss_pred -EEEEEEccCC----------------------------EEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcC
Confidence 9999999864 57899999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc-----C-chHHhhhhhhccCCCCHHHHHHHHH
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT-----N-ASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~-----G-~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+|||+++++++++.+++||||||||++++|+.++.+ . | ++||++|+|+|+|.+++++++++++
T Consensus 173 ~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~-~~~~~~g~v~gvivg~Al~~g~i~~~e~~~~~~ 241 (241)
T PRK14114 173 QEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQR-VHRETNGLLKGVIVGRAFLEGILTVEVMKRYAR 241 (241)
T ss_pred CCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHh-cccccCCcEEEEEEehHHHCCCCCHHHHHHhhC
Confidence 999999999999999999999999999999999986 4 5 9999999999999999999998863
No 6
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=100.00 E-value=2.1e-49 Score=393.03 Aligned_cols=247 Identities=18% Similarity=0.301 Sum_probs=216.6
Q ss_pred eEEEeeeEeecCCCCEE-EEecceeeeee----ccccc-cEEec--CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCc
Q 045794 269 RVIACLDVRANDKGDLV-VTKGDQYDVRE----HTKEN-EVRNL--GKPVELARQYYKEGADEISFLNITGFRDFPLGDL 340 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v-~~~G~~~~~~~----~~~~~-~~~~~--~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~ 340 (578)
|+||||||+ +|+|| +++|+. + +. -.... ...+. .||+++|+.|.+.|++++|+||||+ + ..
T Consensus 2 ~~~PAIDl~---~Gk~VrL~~G~~-~-~~~~~~~~~~~~~~~y~~~~dP~~~A~~~~~~Ga~~lHvVDLdg---g---~~ 70 (262)
T PLN02446 2 RFRPCIDIH---KGKVKQIVGSTL-K-DSKDGSEDGSELVTNFESDKSAAEFAEMYKRDGLTGGHVIMLGA---D---DA 70 (262)
T ss_pred CeeeeEEee---CCEEEEeeCccc-c-ccccccccCCCceEEeCCCCCHHHHHHHHHHCCCCEEEEEECCC---C---Cc
Confidence 789999999 99999 999976 3 00 00000 22343 7999999999999999999999988 2 24
Q ss_pred hhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHH
Q 045794 341 PMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS 420 (578)
Q Consensus 341 ~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (578)
.|.++|++|++ +.+|||+|||||+ |+ +++||++||+||+|||.+++++ ..||+++++++
T Consensus 71 ~n~~~i~~i~~-~~~~vqvGGGIR~-e~-----------i~~~l~~Ga~rViigT~Av~~~--------~~~p~~v~~~~ 129 (262)
T PLN02446 71 SLAAALEALRA-YPGGLQVGGGVNS-EN-----------AMSYLDAGASHVIVTSYVFRDG--------QIDLERLKDLV 129 (262)
T ss_pred ccHHHHHHHHh-CCCCEEEeCCccH-HH-----------HHHHHHcCCCEEEEchHHHhCC--------CCCHHHHHHHH
Confidence 56999999999 8899999999997 76 9999999999999999999962 23578999999
Q ss_pred HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc
Q 045794 421 RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI 500 (578)
Q Consensus 421 ~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi 500 (578)
++||+|+|++|||+|.. +| .|+|+++||++.+++++.+++.++.+.|+++|++|||
T Consensus 130 ~~~G~~~IvvsiD~k~~--------------------~g----~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI 185 (262)
T PLN02446 130 RLVGKQRLVLDLSCRKK--------------------DG----RYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGV 185 (262)
T ss_pred HHhCCCCEEEEEEEEec--------------------CC----CEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEE
Confidence 99999999999999731 12 3799999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc--CchHHhhhhhh--ccCCCCHHHHHHHHHhC
Q 045794 501 DCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT--NASAALAAGIF--HRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 501 ~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~--G~~gv~vgsa~--~~~~~~~~~~~~~l~~~ 572 (578)
++|||++|+|+++++++++.+++||||||||+|++|+.+|.+ . |+.++++|+|+ |.|.++++++.++=+++
T Consensus 186 ~rDGtl~G~d~el~~~l~~~~~ipVIASGGv~sleDi~~L~~-~g~g~~gvIvGkAl~~y~g~~~l~ea~~~~~~~ 260 (262)
T PLN02446 186 DVEGKRLGIDEELVALLGEHSPIPVTYAGGVRSLDDLERVKV-AGGGRVDVTVGSALDIFGGNLPYDDVVAWHKQQ 260 (262)
T ss_pred cCCCcccCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHH-cCCCCEEEEEEeeHHHhCCCccHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999986 5 68999999999 99999999999887654
No 7
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=100.00 E-value=2.6e-49 Score=393.03 Aligned_cols=228 Identities=35% Similarity=0.659 Sum_probs=205.1
Q ss_pred eEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHH
Q 045794 269 RVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLR 347 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~ 347 (578)
||||||||+ +|+|| +++|.++. ..++.+||+++|+.|+++|++++|++|||+++. ++..|.++|+
T Consensus 1 ~iiP~iDl~---~G~~Vr~~~G~~~~--------~~~~~~dP~~~a~~~~~~g~~~l~ivDLdaa~~---g~~~n~~~i~ 66 (229)
T PF00977_consen 1 RIIPAIDLK---NGRVVRLVKGDRFS--------ETVYSGDPVEVAKAFNEQGADELHIVDLDAAKE---GRGSNLELIK 66 (229)
T ss_dssp EEEEEEEEE---TTEEEEESTTCCSC--------EECECCCHHHHHHHHHHTT-SEEEEEEHHHHCC---THHHHHHHHH
T ss_pred CEEEEEEEE---CCEEEECCCeecce--------eeEECcCHHHHHHHHHHcCCCEEEEEEccCccc---CchhHHHHHH
Confidence 799999999 99999 88998854 666789999999999999999999999999853 3478999999
Q ss_pred HHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCe
Q 045794 348 LTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQA 427 (578)
Q Consensus 348 ~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 427 (578)
++++++++|+|+|||||+.+| +++|++.||++|++||+++++ |+++++++++||+|+
T Consensus 67 ~i~~~~~~~i~vgGGIrs~ed-----------~~~ll~~Ga~~Vvigt~~~~~------------~~~l~~~~~~~g~~~ 123 (229)
T PF00977_consen 67 EIAKETGIPIQVGGGIRSIED-----------AERLLDAGADRVVIGTEALED------------PELLEELAERYGSQR 123 (229)
T ss_dssp HHHHHSSSEEEEESSE-SHHH-----------HHHHHHTT-SEEEESHHHHHC------------CHHHHHHHHHHGGGG
T ss_pred HHHhcCCccEEEeCccCcHHH-----------HHHHHHhCCCEEEeChHHhhc------------hhHHHHHHHHcCccc
Confidence 999999999999999999977 999999999999999999985 588899999999999
Q ss_pred EEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCC
Q 045794 428 VVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK 507 (578)
Q Consensus 428 iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~ 507 (578)
|++|||++++ |++.++||.+.+++++.++++++.++|++++|+||+++||+++
T Consensus 124 ivvslD~~~g---------------------------~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~ 176 (229)
T PF00977_consen 124 IVVSLDARDG---------------------------YKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQ 176 (229)
T ss_dssp EEEEEEEEET---------------------------EEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS
T ss_pred EEEEEEeeec---------------------------eEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcC
Confidence 9999999874 5799999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCC
Q 045794 508 GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 508 G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~ 561 (578)
|+|+++++++++.+++|+|++|||++.+|+.++.+ .|++||++|+|||.|.++
T Consensus 177 G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~-~G~~gvivg~al~~g~it 229 (229)
T PF00977_consen 177 GPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKK-AGIDGVIVGSALHEGKIT 229 (229)
T ss_dssp S--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHH-TTECEEEESHHHHTTSS-
T ss_pred CCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHH-CCCcEEEEehHhhCCccC
Confidence 99999999999988999999999999999999984 999999999999999864
No 8
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=100.00 E-value=5.9e-47 Score=375.30 Aligned_cols=224 Identities=21% Similarity=0.284 Sum_probs=201.5
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
||||||||++ +|+|| +++|++. +... .+||+++|+.|+++|++++|++|||+++ ++..|.++|
T Consensus 2 m~iIP~iDl~---~G~~Vr~~~G~~~--------~~~~-~~dP~~~a~~~~~~ga~~lhivDLd~a~----~~~~n~~~i 65 (232)
T PRK13586 2 SKIIPSIDIS---LGKAVKRIRGVKG--------TGLI-LGNPIEIASKLYNEGYTRIHVVDLDAAE----GVGNNEMYI 65 (232)
T ss_pred cEEEEEEEEE---CCEEEEeeecCCC--------CceE-cCCHHHHHHHHHHCCCCEEEEEECCCcC----CCcchHHHH
Confidence 5899999999 99988 8888762 1333 4799999999999999999999999985 246788999
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
+++++++..|+|+||||||.+| +++|++.||++|++||.++++ |+++++++++||+|
T Consensus 66 ~~i~~~~~~~v~vGGGIrs~e~-----------~~~~l~~Ga~kvvigt~a~~~------------p~~~~~~~~~~g~~ 122 (232)
T PRK13586 66 KEISKIGFDWIQVGGGIRDIEK-----------AKRLLSLDVNALVFSTIVFTN------------FNLFHDIVREIGSN 122 (232)
T ss_pred HHHHhhCCCCEEEeCCcCCHHH-----------HHHHHHCCCCEEEECchhhCC------------HHHHHHHHHHhCCC
Confidence 9999966679999999999976 999999999999999999995 47889999999999
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
+|++|||++.+ +++.++||.+ +..++.+++++++++|++++|+||+++|||+
T Consensus 123 ~ivvslD~~~~---------------------------~~v~~~gw~~-~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~ 174 (232)
T PRK13586 123 RVLVSIDYDNT---------------------------KRVLIRGWKE-KSMEVIDGIKKVNELELLGIIFTYISNEGTT 174 (232)
T ss_pred CEEEEEEcCCC---------------------------CEEEccCCee-CCCCHHHHHHHHHhcCCCEEEEecccccccC
Confidence 99999999532 1788999977 7889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCC
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~ 560 (578)
+|+|+++++.+++. ..|+|++|||++.+|++++.+ .|++||++|+|+|.+.+
T Consensus 175 ~G~d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~~-~G~~gvivg~Aly~g~~ 226 (232)
T PRK13586 175 KGIDYNVKDYARLI-RGLKEYAGGVSSDADLEYLKN-VGFDYIIVGMAFYLGKL 226 (232)
T ss_pred cCcCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHH-CCCCEEEEehhhhcCcc
Confidence 99999999999876 567999999999999999985 89999999999998875
No 9
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=100.00 E-value=1.1e-46 Score=376.25 Aligned_cols=236 Identities=17% Similarity=0.203 Sum_probs=211.3
Q ss_pred ceeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHH
Q 045794 267 AKRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQV 345 (578)
Q Consensus 267 ~~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~ 345 (578)
.|+||||||++ +|+|| +++|+. + ..+.++||+++|+.|.+.|++++|++|||++++ ++.|.++
T Consensus 2 ~m~iiPaIDl~---~G~vVrl~~G~~-~--------~~~~y~~p~~~a~~~~~~g~~~lhivDLd~a~g----~~~n~~~ 65 (243)
T TIGR01919 2 TLILLPAVDVN---GGAAVRLQQGAG-G--------SKTYYGSLESAAKWWEQGGAEWIHLVDLDAAFG----GGNNEMM 65 (243)
T ss_pred ceEEEEEEEEE---CCEEEEeecCCC-C--------CceecCCHHHHHHHHHhCCCeEEEEEECCCCCC----CcchHHH
Confidence 46999999999 99999 888875 2 333346999999999999999999999999852 4678999
Q ss_pred HHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 346 LRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 346 i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
|+++++.+++|+|+||||||.+| ++++++.||++|++||+++++ |+++++++++||+
T Consensus 66 i~~i~~~~~~~v~vgGGIrs~e~-----------~~~~l~~Ga~~vvigT~a~~~------------p~~~~~~~~~~g~ 122 (243)
T TIGR01919 66 LEEVVKLLVVVEELSGGRRDDSS-----------LRAALTGGRARVNGGTAALEN------------PWWAAAVIRYGGD 122 (243)
T ss_pred HHHHHHHCCCCEEEcCCCCCHHH-----------HHHHHHcCCCEEEECchhhCC------------HHHHHHHHHHccc
Confidence 99999999999999999999977 999999999999999999985 4788999999986
Q ss_pred CeEEEEEecc-ccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 426 QAVVVSIDPR-RVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 426 ~~iv~slD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
+ |++|||+| ++ + +..+.++||.+ +++++.+++++++++|++++|+||+++||
T Consensus 123 ~-ivvslD~k~~g----------------------~---~~~v~~~Gw~~-~~~~~~~~~~~~~~~g~~~ii~tdI~~dG 175 (243)
T TIGR01919 123 I-VAVGLDVLEDG----------------------E---WHTLGNRGWSD-GGGDLEVLERLLDSGGCSRVVVTDSKKDG 175 (243)
T ss_pred c-EEEEEEEecCC----------------------c---eEEEECCCeec-CCCcHHHHHHHHHhCCCCEEEEEecCCcc
Confidence 5 99999997 32 1 34788999987 78999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH--hcCchHHhhhhhhccCCCCHHHHHHH
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFR--KTNASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~--~~G~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
|++|||+++++++++.+++|||||||+++.+|+.++.+ +.|++||++|+|+|.|.++++++++.
T Consensus 176 t~~G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~i~~~~~~~~ 241 (243)
T TIGR01919 176 LSGGPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARFFTLEAALAV 241 (243)
T ss_pred cCCCcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCCCCHHHHHhh
Confidence 99999999999999999999999999999999999853 35999999999999999999987643
No 10
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=100.00 E-value=1.5e-46 Score=373.66 Aligned_cols=224 Identities=21% Similarity=0.337 Sum_probs=206.0
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHH-cCCCeEEEEecccCCCCCCCCchhHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYK-EGADEISFLNITGFRDFPLGDLPMLQV 345 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~-~g~~~i~~~Dl~~~~~~~~~~~~~~~~ 345 (578)
++|||+|||+ +|+|| +++|++.. ...+.+||+++|+.|++ .||++|||+|||+++.+ +..|+++
T Consensus 2 ~~iiPaIDl~---~G~~Vr~~~G~~~~--------~~~~~~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~---~~~n~~~ 67 (234)
T PRK13587 2 IELWPAIDLI---GSTSVRLTEGKYDS--------EEKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQ---HAREFDY 67 (234)
T ss_pred CEEEEEEEcc---CCEEEEcCcccCCC--------ceEeCCCHHHHHHHHHhccCCCEEEEEECcccccC---CcchHHH
Confidence 5799999999 99999 99998833 33345799999999999 69999999999998643 3678999
Q ss_pred HHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 346 LRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 346 i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
|++|++.+++|||+||||||+|| +++++++||++|++||+++++ |+++++++++||
T Consensus 68 I~~i~~~~~~pi~vGGGIrs~e~-----------v~~~l~~Ga~kvvigt~a~~~------------~~~l~~~~~~fg- 123 (234)
T PRK13587 68 IKSLRRLTTKDIEVGGGIRTKSQ-----------IMDYFAAGINYCIVGTKGIQD------------TDWLKEMAHTFP- 123 (234)
T ss_pred HHHHHhhcCCeEEEcCCcCCHHH-----------HHHHHHCCCCEEEECchHhcC------------HHHHHHHHHHcC-
Confidence 99999999999999999999977 999999999999999999995 578899999998
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
++|++|||++++ ++.++||.+.+++++.+++++++++|++++|+|++++|||
T Consensus 124 ~~ivvslD~~~g----------------------------~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt 175 (234)
T PRK13587 124 GRIYLSVDAYGE----------------------------DIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGK 175 (234)
T ss_pred CCEEEEEEeeCC----------------------------EEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCC
Confidence 569999999864 6789999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
++|+|+++++++.+.+++|||++||+++++|+.++++ .|+++|++|+++|.+
T Consensus 176 ~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~-~G~~~vivG~a~~~~ 227 (234)
T PRK13587 176 MSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLAS-LNVHAAIIGKAAHQA 227 (234)
T ss_pred CCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCCEEEEhHHHHhC
Confidence 9999999999999989999999999999999999995 999999999999984
No 11
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=100.00 E-value=5.7e-46 Score=372.06 Aligned_cols=234 Identities=18% Similarity=0.317 Sum_probs=211.9
Q ss_pred ceeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHH
Q 045794 267 AKRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQV 345 (578)
Q Consensus 267 ~~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~ 345 (578)
.|||||+||++ +|+|| +++|++ + ..+.++||+++|+.|+++|+++||++|||++. +++.|.++
T Consensus 3 ~m~iIP~idl~---~G~~V~~~~g~~-~--------~~~~~~dp~~~a~~~~~~g~~~l~ivDLd~~~----g~~~n~~~ 66 (241)
T PRK14024 3 SLTLLPAVDVV---DGQAVRLVQGEA-G--------SETSYGSPLDAALAWQRDGAEWIHLVDLDAAF----GRGSNREL 66 (241)
T ss_pred ceEEEEEEEeE---CCEEEEeecccc-c--------CceECCCHHHHHHHHHHCCCCEEEEEeccccC----CCCccHHH
Confidence 47999999999 99999 889986 2 34446799999999999999999999999874 34678999
Q ss_pred HHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 346 LRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 346 i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
|++|++.+++|+|+||||||+|| +++++++||+++++||+++++ |+++++++++|++
T Consensus 67 i~~i~~~~~~pv~vgGGirs~ed-----------v~~~l~~Ga~kvviGs~~l~~------------p~l~~~i~~~~~~ 123 (241)
T PRK14024 67 LAEVVGKLDVKVELSGGIRDDES-----------LEAALATGCARVNIGTAALEN------------PEWCARVIAEHGD 123 (241)
T ss_pred HHHHHHHcCCCEEEcCCCCCHHH-----------HHHHHHCCCCEEEECchHhCC------------HHHHHHHHHHhhh
Confidence 99999999999999999999977 999999999999999999995 4788999999985
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
++++|+|++.+ .+.++||.+ +..+++++++++++.|++++++|+++++|+
T Consensus 124 -~i~vsld~~~~----------------------------~v~~~Gw~~-~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~ 173 (241)
T PRK14024 124 -RVAVGLDVRGH----------------------------TLAARGWTR-DGGDLWEVLERLDSAGCSRYVVTDVTKDGT 173 (241)
T ss_pred -hEEEEEEEecc----------------------------EeccCCeee-cCccHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence 59999998753 456789987 567999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH--hcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFR--KTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~--~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
++|+|+++++++++.+++|||++|||++.+|+.++.+ +.||+||++|+++|.+.+++++++++.
T Consensus 174 ~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~~~~ 239 (241)
T PRK14024 174 LTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEALAVV 239 (241)
T ss_pred ccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHHHHh
Confidence 9999999999999999999999999999999999863 369999999999999999999988764
No 12
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=100.00 E-value=3.6e-45 Score=369.73 Aligned_cols=250 Identities=35% Similarity=0.574 Sum_probs=227.9
Q ss_pred ccceeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHH
Q 045794 265 KLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQ 344 (578)
Q Consensus 265 ~~~~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~ 344 (578)
|+++||||+||++ +|++|..+|+. ..++.+||+++|+.|++.|+++||++||+++.. .+++|++
T Consensus 1 m~~~~iipaiD~~---~G~~V~~~~~~----------~~~~~~dp~~~a~~~~~~g~~~l~i~Dl~~~~~---~~~~n~~ 64 (258)
T PRK01033 1 MLRPRIIPCLLLK---DGGLVKTVKFK----------DPRYIGDPINAVRIFNEKEVDELIVLDIDASKR---GSEPNYE 64 (258)
T ss_pred CCCcEEEEEEEEE---CCcEEEeeccc----------CceeCCCHHHHHHHHHHcCCCEEEEEECCCCcC---CCcccHH
Confidence 6789999999999 89988666654 223568999999999999999999999999742 3478999
Q ss_pred HHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCC
Q 045794 345 VLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG 424 (578)
Q Consensus 345 ~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (578)
+|+++++.+++||++||||++++| +++++++|+++|++||+++++ |+++++++++||
T Consensus 65 ~i~~i~~~~~~pv~~gGGi~s~~d-----------~~~l~~~G~~~vvigs~~~~~------------~~~~~~~~~~~~ 121 (258)
T PRK01033 65 LIENLASECFMPLCYGGGIKTLEQ-----------AKKIFSLGVEKVSINTAALED------------PDLITEAAERFG 121 (258)
T ss_pred HHHHHHHhCCCCEEECCCCCCHHH-----------HHHHHHCCCCEEEEChHHhcC------------HHHHHHHHHHhC
Confidence 999999999999999999999977 999999999999999999985 478899999999
Q ss_pred CCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 425 NQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 425 ~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
+++|++|||+|.+.. | .|++.++||++.++.++.+++++++++|++++++|+++++|
T Consensus 122 ~~~i~vsiD~k~g~~-------------------~----~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G 178 (258)
T PRK01033 122 SQSVVVSIDVKKNLG-------------------G----KFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDG 178 (258)
T ss_pred CCcEEEEEEEecCCC-------------------C----cEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCC
Confidence 999999999987511 1 37899999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC--------CCCHHHHHHHHHhCCCee
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK--------EVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~--------~~~~~~~~~~l~~~~i~v 576 (578)
+++|+|+++++++++.+++|||++|||++.+|+.+++++.||+||++|+|||+. ..++..+|.+|++++|++
T Consensus 179 ~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (258)
T PRK01033 179 TMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFKGVYKAVLINYPNGDEKEELLKAGIPV 258 (258)
T ss_pred CcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeCcccccccccccHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999866999999999999999 999999999999999975
No 13
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=100.00 E-value=1.7e-45 Score=363.85 Aligned_cols=233 Identities=20% Similarity=0.314 Sum_probs=201.2
Q ss_pred eEEEeeeEeecCCCCEE-EEecceeeeeecccccc------E-EecCCH-HHHHHHHHHcCCCeEEEEecccCCCCCCCC
Q 045794 269 RVIACLDVRANDKGDLV-VTKGDQYDVREHTKENE------V-RNLGKP-VELARQYYKEGADEISFLNITGFRDFPLGD 339 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~------~-~~~~~p-~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~ 339 (578)
++||+|||+ +|+|| +++|+. + +. . .+..|| +++|+.|.++||++||+||| + .
T Consensus 2 ~~iPAIDl~---~Gk~VrL~qG~~-~-------~~~~~~~~~~~y~~~pp~~~A~~~~~~Ga~~lHvVDL-g-------~ 62 (253)
T TIGR02129 2 KFRPCIDIH---NGKVKQIVGGTL-T-------SKKGSVLKTNFVSDKPSSYYAKLYKDDGVKGCHVIML-G-------P 62 (253)
T ss_pred ceEeEEEee---CCEEEEeeCcCc-c-------ccccCCcceEEecCCCHHHHHHHHHHcCCCEEEEEEC-C-------C
Confidence 689999999 99999 999986 3 23 3 455667 99999999999999999999 2 1
Q ss_pred chhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHH
Q 045794 340 LPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQI 419 (578)
Q Consensus 340 ~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~ 419 (578)
. |.++|++|++++++||++|||||+ |+ ++++|++||++|+|||.+++++ .++|++++++
T Consensus 63 ~-n~~~i~~i~~~~~~~v~vGGGIr~-e~-----------v~~~l~aGa~rVvIGS~av~~~--------~i~~~~~~~i 121 (253)
T TIGR02129 63 N-NDDAAKEALHAYPGGLQVGGGIND-TN-----------AQEWLDEGASHVIVTSWLFTKG--------KFDLKRLKEI 121 (253)
T ss_pred C-cHHHHHHHHHhCCCCEEEeCCcCH-HH-----------HHHHHHcCCCEEEECcHHHhCC--------CCCHHHHHHH
Confidence 3 789999999999999999999998 76 9999999999999999999853 2357899999
Q ss_pred HHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHH-HHHHHHHHcCCcEEEEe
Q 045794 420 SRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAY-ELAKAVEDLGAGEILLN 498 (578)
Q Consensus 420 ~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-e~~~~~~~~G~~~ii~t 498 (578)
+++||+|+|++|||+|.. .+| .|+|+++||.+.+++++. ++++++++. +++|++|
T Consensus 122 ~~~fG~~~IvvsiD~k~~-------------------~~g----~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~T 177 (253)
T TIGR02129 122 VSLVGKDRLIVDLSCRKT-------------------QDG----RWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIH 177 (253)
T ss_pred HHHhCCCCEEEEEEEEEc-------------------CCC----cEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEe
Confidence 999999999999999721 012 379999999999999999 999999999 9999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh-cCchHHhhhhhhc-c--CCCCHHHH
Q 045794 499 CIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRK-TNASAALAAGIFH-R--KEVPIQSV 565 (578)
Q Consensus 499 di~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~-~G~~gv~vgsa~~-~--~~~~~~~~ 565 (578)
|+++|||++|+|+++++++++.+++|||||||+++++|++++.+. .|..++++|+|++ + +.+.+.++
T Consensus 178 dI~rDGtl~G~dlel~~~l~~~~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~f~~~~~~~~~~ 248 (253)
T TIGR02129 178 AADVEGLCKGIDEELVSKLGEWSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDIFGGNLVKFTDC 248 (253)
T ss_pred eecccCccccCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHHhCCCCccHHHH
Confidence 999999999999999999999999999999999999999999542 2677788888764 2 33444443
No 14
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=100.00 E-value=8.3e-45 Score=366.70 Aligned_cols=254 Identities=50% Similarity=0.847 Sum_probs=230.4
Q ss_pred ccceeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHH
Q 045794 265 KLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQ 344 (578)
Q Consensus 265 ~~~~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~ 344 (578)
|++++|||+||++ +|+| |+|++++ ...+..||+++|+.|.+.|++++|++||+++.. ..+.|++
T Consensus 1 ~~~~~iip~iD~~---~G~~--V~~~~~~--------~~~~~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~---~~~~n~~ 64 (254)
T TIGR00735 1 MLAKRIIPCLDVR---DGRV--VKGVQFL--------NLRDAGDPVELAQRYDEEGADELVFLDITASSE---GRTTMID 64 (254)
T ss_pred CCCCeEEEEEEeE---CCEE--EEeEeec--------CceECCCHHHHHHHHHHcCCCEEEEEcCCcccc---cChhhHH
Confidence 7789999999999 8985 6777643 345567999999999999999999999998632 3478999
Q ss_pred HHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCC
Q 045794 345 VLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG 424 (578)
Q Consensus 345 ~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (578)
+|+++++.+++||++||||||.+| +++++++||++|++||+++++ |++++++.++||
T Consensus 65 ~i~~i~~~~~~pv~~~GGi~s~~d-----------~~~~~~~Ga~~vivgt~~~~~------------p~~~~~~~~~~~ 121 (254)
T TIGR00735 65 VVERTAETVFIPLTVGGGIKSIED-----------VDKLLRAGADKVSINTAAVKN------------PELIYELADRFG 121 (254)
T ss_pred HHHHHHHhcCCCEEEECCCCCHHH-----------HHHHHHcCCCEEEEChhHhhC------------hHHHHHHHHHcC
Confidence 999999999999999999999977 999999999999999999985 478899999999
Q ss_pred CCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 425 NQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 425 ~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
+++|++|||++++.+. + +.||+|+++||.+.++.++.++++.+++.|+++|++|+++++|
T Consensus 122 ~~~iv~slD~~~g~~~------------------~--~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g 181 (254)
T TIGR00735 122 SQCIVVAIDAKRVYVN------------------S--YCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDG 181 (254)
T ss_pred CCCEEEEEEeccCCCC------------------C--CccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCccc
Confidence 9999999999875321 0 1368999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeec
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 577 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~ 577 (578)
++.|+|+++++++++.+++|||++|||++++|+.++++..||+||++|+++|++.+++++++++|++.||+||
T Consensus 182 ~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~~ 254 (254)
T TIGR00735 182 TKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIPVR 254 (254)
T ss_pred CCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCccC
Confidence 9999999999999999999999999999999999999744599999999999999999999999999999986
No 15
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=100.00 E-value=2.2e-44 Score=363.72 Aligned_cols=253 Identities=48% Similarity=0.788 Sum_probs=229.0
Q ss_pred ccceeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHH
Q 045794 265 KLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQ 344 (578)
Q Consensus 265 ~~~~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~ 344 (578)
|++++|||+||++ +|+|| +++++. ...+.+||+++|+.|.+.|++++|++|+++... .++.|++
T Consensus 1 ~~~~~iip~idl~---~g~~V--~~~~~~--------~~~~~~d~~~~a~~~~~~G~~~i~i~dl~~~~~---~~~~~~~ 64 (253)
T PRK02083 1 MLAKRIIPCLDVK---DGRVV--KGVNFV--------NLRDAGDPVELAKRYNEEGADELVFLDITASSE---GRDTMLD 64 (253)
T ss_pred CCCCeEEEEEEEE---CCEEE--EeEEec--------ceeecCCHHHHHHHHHHcCCCEEEEEeCCcccc---cCcchHH
Confidence 7789999999999 89965 444433 346678999999999999999999999998532 2378999
Q ss_pred HHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCC
Q 045794 345 VLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG 424 (578)
Q Consensus 345 ~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (578)
+|+++++++++||++||||++.+| ++++++.||++|++||.++.+ |++++++++.||
T Consensus 65 ~i~~i~~~~~ipv~~~GGi~s~~~-----------~~~~l~~Ga~~Viigt~~l~~------------p~~~~ei~~~~g 121 (253)
T PRK02083 65 VVERVAEQVFIPLTVGGGIRSVED-----------ARRLLRAGADKVSINSAAVAN------------PELISEAADRFG 121 (253)
T ss_pred HHHHHHHhCCCCEEeeCCCCCHHH-----------HHHHHHcCCCEEEEChhHhhC------------cHHHHHHHHHcC
Confidence 999999999999999999999977 999999999999999999985 478899999999
Q ss_pred CCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 425 NQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 425 ~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
+++|++|+|++++.. .| .|+|+++||.+.++.++.++++++++.|++++++|+++++|
T Consensus 122 ~~~iv~slD~~~~~~------------------~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g 179 (253)
T PRK02083 122 SQCIVVAIDAKRDPE------------------PG----RWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDG 179 (253)
T ss_pred CCCEEEEEEeccCCC------------------CC----CEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCC
Confidence 999999999986421 01 26899999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeecC
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~~ 578 (578)
+++|+|+++++++++.+++|||++||+++.+|+.++++..||+||++|+++|++.+++++++++|+++||+||+
T Consensus 180 ~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~~~~~~~~ 253 (253)
T PRK02083 180 TKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAEQGIPVRL 253 (253)
T ss_pred CCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHHCCCcccC
Confidence 99999999999999999999999999999999999987579999999999999999999999999999999985
No 16
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=100.00 E-value=1.2e-43 Score=353.47 Aligned_cols=230 Identities=26% Similarity=0.400 Sum_probs=206.1
Q ss_pred eEEEeeeEeecCCCCEE-EEecceeeeeeccc-cccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 269 RVIACLDVRANDKGDLV-VTKGDQYDVREHTK-ENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~-~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
|||||||++ +|+|| +++|++. .|+| ++...+.+||+++|+.|++.|++++|++|||++. +...|+++|
T Consensus 1 riiP~iDl~---~G~~V~~~~G~~~---~~~p~~~~~~~~~dp~~~a~~~~~~g~~~l~i~DLd~~~----~~~~n~~~i 70 (233)
T cd04723 1 RIIPVIDLK---DGVVVHGVGGDRD---NYRPITSNLCSTSDPLDVARAYKELGFRGLYIADLDAIM----GRGDNDEAI 70 (233)
T ss_pred CeEEEEECc---CCEEEEeeccChh---hccccccCcccCCCHHHHHHHHHHCCCCEEEEEeCcccc----CCCccHHHH
Confidence 699999999 99988 7788763 3444 3455667899999999999999999999999974 246789999
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
+++++.+++|+|+|||||++|| +++++++||++|++||.++++ +++++++++||+|
T Consensus 71 ~~i~~~~~~~v~vgGGir~~ed-----------v~~~l~~Ga~~viigt~~~~~-------------~~~~~~~~~~~~~ 126 (233)
T cd04723 71 RELAAAWPLGLWVDGGIRSLEN-----------AQEWLKRGASRVIVGTETLPS-------------DDDEDRLAALGEQ 126 (233)
T ss_pred HHHHHhCCCCEEEecCcCCHHH-----------HHHHHHcCCCeEEEcceeccc-------------hHHHHHHHhcCCC
Confidence 9999999999999999999977 999999999999999999983 5679999999988
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
++++|||++++. +. | +.+..++.++++++++. +++++++|++++|++
T Consensus 127 ~iivslD~~~~~----------------------------~~---~-~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~ 173 (233)
T cd04723 127 RLVLSLDFRGGQ----------------------------LL---K-PTDFIGPEELLRRLAKW-PEELIVLDIDRVGSG 173 (233)
T ss_pred CeEEEEeccCCe----------------------------ec---c-ccCcCCHHHHHHHHHHh-CCeEEEEEcCccccC
Confidence 999999998752 22 2 44578999999999999 999999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
+|+|+++++++.+.+++||+++|||++++|++++++ .|+++|++||++|.+.+++++++
T Consensus 174 ~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~-~G~~~vivGsal~~g~~~~~~~~ 232 (233)
T cd04723 174 QGPDLELLERLAARADIPVIAAGGVRSVEDLELLKK-LGASGALVASALHDGGLTLEDVV 232 (233)
T ss_pred CCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH-cCCCEEEEehHHHcCCCCHHHHh
Confidence 999999999999999999999999999999999996 89999999999999999998876
No 17
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=100.00 E-value=4.9e-43 Score=346.92 Aligned_cols=224 Identities=20% Similarity=0.365 Sum_probs=200.7
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
|||||+||++ +|+|| +++||+. ....++||+++|+.|.+. ++++|++|||++..+ ...|+++|
T Consensus 2 mrIip~iD~~---~G~vVr~~~G~~~---------~~~~~~dp~~~a~~~~~~-~~~l~ivDldga~~g---~~~n~~~i 65 (228)
T PRK04128 2 MRIYPAIDLM---NGKAVRLYKGRKE---------EVKVYGDPVEIALRFSEY-VDKIHVVDLDGAFEG---KPKNLDVV 65 (228)
T ss_pred cEEEEEEEeE---CCEEEEEEecccc---------CceECCCHHHHHHHHHHh-CCEEEEEECcchhcC---CcchHHHH
Confidence 5999999999 99998 9999983 233346999999999998 999999999987543 35789999
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
+++++.+++||++|||||+.+| +++++++|+++|++||+++ + |+++++++++||+
T Consensus 66 ~~i~~~~~~pv~~gGGIrs~ed-----------v~~l~~~G~~~vivGtaa~-~------------~~~l~~~~~~~g~- 120 (228)
T PRK04128 66 KNIIRETGLKVQVGGGLRTYES-----------IKDAYEIGVENVIIGTKAF-D------------LEFLEKVTSEFEG- 120 (228)
T ss_pred HHHHhhCCCCEEEcCCCCCHHH-----------HHHHHHCCCCEEEECchhc-C------------HHHHHHHHHHcCC-
Confidence 9999999999999999999977 9999999999999999999 5 3778999999973
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
|++|||+|++ ++.++||.+.++.+++++++++++. ++++|+|++++|||+
T Consensus 121 -ivvslD~~~g----------------------------~v~~~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~ 170 (228)
T PRK04128 121 -ITVSLDVKGG----------------------------RIAVKGWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTL 170 (228)
T ss_pred -EEEEEEccCC----------------------------eEecCCCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcc
Confidence 9999999874 5779999999999999999999999 999999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHH
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKE 567 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~ 567 (578)
+|+| ++.+.+ .++||||+|||++++|+.++.+ .|++||++|+|||++.++++++++
T Consensus 171 ~G~d-~l~~~~---~~~pviasGGv~~~~Dl~~l~~-~g~~gvivg~al~~g~~~~~~~~~ 226 (228)
T PRK04128 171 TGIE-EIERFW---GDEEFIYAGGVSSAEDVKKLAE-IGFSGVIIGKALYEGRISLEELLE 226 (228)
T ss_pred cCHH-HHHHhc---CCCCEEEECCCCCHHHHHHHHH-CCCCEEEEEhhhhcCCcCHHHHHh
Confidence 9999 444432 4799999999999999999986 899999999999999999998764
No 18
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=100.00 E-value=3.2e-41 Score=332.66 Aligned_cols=217 Identities=20% Similarity=0.236 Sum_probs=187.7
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccc-cccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTK-ENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQV 345 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~-~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~ 345 (578)
|||||+||++ +|+|| +++|++. .|+| ++...+.+||+++|+.|+++|++++|++|||++. ++..|+++
T Consensus 1 m~iIP~iDl~---~g~~Vr~~~G~~~---~~~~~~~~~~~~~dP~~~a~~~~~~g~~~l~ivDLd~~~----~~~~n~~~ 70 (221)
T TIGR00734 1 MKIIPVIDLK---DGIAVAGKSGERE---SYPPLESVSRLSSSPDDAAKVIEEIGARFIYIADLDRIV----GLGDNFSL 70 (221)
T ss_pred CEEEEEEEee---CCEEEEccccCcc---cccccccceecCCCHHHHHHHHHHcCCCEEEEEEccccc----CCcchHHH
Confidence 5999999999 99998 8888763 3444 2345667999999999999999999999999974 34678999
Q ss_pred HHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH--cCcceeecchhhhccchhhhhccccCCchHHHHHHHhC
Q 045794 346 LRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR--SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY 423 (578)
Q Consensus 346 i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~--~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (578)
|++|+++ +|+|+|||||+.|| +++++. .||+||++||.++++ |++++++.
T Consensus 71 i~~i~~~--~~v~vgGGirs~e~-----------~~~~~~~l~~a~rvvigT~a~~~------------p~~l~~~~--- 122 (221)
T TIGR00734 71 LSKLSKR--VELIADCGVRSPED-----------LETLPFTLEFASRVVVATETLDI------------TELLRECY--- 122 (221)
T ss_pred HHHHHhh--CcEEEcCccCCHHH-----------HHHHHhhhccceEEeecChhhCC------------HHHHHHhh---
Confidence 9999987 49999999999977 888865 269999999999995 36667764
Q ss_pred CCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC
Q 045794 424 GNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD 503 (578)
Q Consensus 424 g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d 503 (578)
+++|||++++ ++.++||.+ ++.++.+.+.++|+ ++++||+++|
T Consensus 123 ----~vvslD~~~g----------------------------~v~~~g~~~----~~~~~~~~~~~~g~-~ii~tdI~~d 165 (221)
T TIGR00734 123 ----TVVSLDFKEK----------------------------FLDASGLFE----SLEEVRDFLNSFDY-GLIVLDIHSV 165 (221)
T ss_pred ----hEEEEEeECC----------------------------ccccccccc----cHHHHHHHHHhcCC-EEEEEECCcc
Confidence 6999999864 244578875 57888999999998 8999999999
Q ss_pred CCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCC
Q 045794 504 GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 504 G~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~ 560 (578)
||++|+|+++++++++.+++|||++|||++++|++++++ .|++||++|+|+|+|.+
T Consensus 166 Gt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~-~Ga~~vivgsal~~g~i 221 (221)
T TIGR00734 166 GTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKE-MGVSAVLVATAVHKGKI 221 (221)
T ss_pred ccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHH-CCCCEEEEhHHhhCCCC
Confidence 999999999999999999999999999999999999885 89999999999999864
No 19
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=100.00 E-value=1.9e-40 Score=332.70 Aligned_cols=238 Identities=27% Similarity=0.492 Sum_probs=216.9
Q ss_pred ceeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHH
Q 045794 267 AKRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQV 345 (578)
Q Consensus 267 ~~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~ 345 (578)
.||||||||++ +|+|| +++|.+.. ...+.+||+++|+.|.+.|++++|++|++++.. +...+.+.
T Consensus 2 ~~~iip~idl~---~g~~v~~~~g~~~~--------~~~~~~~~~e~a~~~~~~G~~~l~i~dl~~~~~---~~~~~~~~ 67 (241)
T PRK13585 2 SFEVIPAVDMK---GGKCVQLVQGEPGT--------ETVSYGDPVEVAKRWVDAGAETLHLVDLDGAFE---GERKNAEA 67 (241)
T ss_pred CeEEEEEEEeE---CCeEEEeeccccCC--------ceEECCCHHHHHHHHHHcCCCEEEEEechhhhc---CCcccHHH
Confidence 37999999999 99998 88888743 334568999999999999999999999997643 33667999
Q ss_pred HHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 346 LRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 346 i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
|+++++.+++|+++|||||+.+| ++.++++||++|++||.++++ |+++.++.+.||+
T Consensus 68 i~~i~~~~~~~l~v~GGi~~~~~-----------~~~~~~~Ga~~v~iGs~~~~~------------~~~~~~i~~~~g~ 124 (241)
T PRK13585 68 IEKIIEAVGVPVQLGGGIRSAED-----------AASLLDLGVDRVILGTAAVEN------------PEIVRELSEEFGS 124 (241)
T ss_pred HHHHHHHcCCcEEEcCCcCCHHH-----------HHHHHHcCCCEEEEChHHhhC------------hHHHHHHHHHhCC
Confidence 99999999999999999999977 999999999999999999985 4778999999999
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
++|++++|++++ ++.++||.+.++.++.++++++++.|++++++|+++++|+
T Consensus 125 ~~i~~sid~~~~----------------------------~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~ 176 (241)
T PRK13585 125 ERVMVSLDAKDG----------------------------EVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGL 176 (241)
T ss_pred CcEEEEEEeeCC----------------------------EEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 999999998864 5778999998888999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
..|+|+++++++++.+++||+++|||++++|+.++++ .||+||++|+++|.++..+++++++++
T Consensus 177 ~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~-~Ga~gv~vgsa~~~~~~~~~~~~~~~~ 240 (241)
T PRK13585 177 LEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKE-AGAAGVVVGSALYKGKFTLEEAIEAVK 240 (241)
T ss_pred cCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCCEEEEEHHHhcCCcCHHHHHHHhc
Confidence 9999999999999999999999999999999999874 999999999999999999999988875
No 20
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=100.00 E-value=8.8e-41 Score=333.37 Aligned_cols=231 Identities=23% Similarity=0.386 Sum_probs=208.8
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
|+|||+||++ +|+|| +++||++. ...+.+||+++|+.|++.|++++|++|||++..+ ++.|++++
T Consensus 1 m~iip~iD~~---~g~~v~~~~G~~~~--------~~~~~~~~~~~a~~~~~~g~~~i~v~dld~~~~g---~~~~~~~i 66 (233)
T PRK00748 1 MIIIPAIDLK---DGKCVRLYQGDYDQ--------ATVYSDDPVAQAKAWEDQGAKWLHLVDLDGAKAG---KPVNLELI 66 (233)
T ss_pred CeEEEEEEEE---CCeEEEcccccccc--------ceEecCCHHHHHHHHHHcCCCEEEEEeCCccccC---CcccHHHH
Confidence 4899999999 99988 79999843 4445689999999999999999999999987533 36789999
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
+++++.+++||++|||||+.+| +++++++||++|++|++++++ |+++++++++|+ +
T Consensus 67 ~~i~~~~~~pv~~~GGI~~~ed-----------~~~~~~~Ga~~vilg~~~l~~------------~~~l~ei~~~~~-~ 122 (233)
T PRK00748 67 EAIVKAVDIPVQVGGGIRSLET-----------VEALLDAGVSRVIIGTAAVKN------------PELVKEACKKFP-G 122 (233)
T ss_pred HHHHHHCCCCEEEcCCcCCHHH-----------HHHHHHcCCCEEEECchHHhC------------HHHHHHHHHHhC-C
Confidence 9999999999999999999977 999999999999999999985 467899999995 6
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
++++++|+|.+ .+.++||.+.+..++.++++++++.|++++++|+++++|++
T Consensus 123 ~i~vsid~k~~----------------------------~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~ 174 (233)
T PRK00748 123 KIVVGLDARDG----------------------------KVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTL 174 (233)
T ss_pred CceeeeeccCC----------------------------EEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCc
Confidence 79999999752 57789999888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHH
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQS 564 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~ 564 (578)
+|+|+++++++++.+++|||++|||++++|++++++..||+||++|+++|++.+++.+
T Consensus 175 ~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~~~~~~~ 232 (233)
T PRK00748 175 SGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEGKFDLAE 232 (233)
T ss_pred CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcCCcCccc
Confidence 9999999999999999999999999999999999974349999999999999988765
No 21
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=100.00 E-value=1.3e-40 Score=331.56 Aligned_cols=228 Identities=29% Similarity=0.481 Sum_probs=208.5
Q ss_pred EEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH
Q 045794 270 VIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL 348 (578)
Q Consensus 270 iIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~ 348 (578)
|||+||++ +|+|| +++|+++. ...+.+||+++|+.|++.|++++|++||+++..+ +..|+++|++
T Consensus 1 iip~id~~---~g~~v~~~~G~~~~--------~~~~~~dp~~~a~~~~~~g~~~l~v~dl~~~~~g---~~~~~~~i~~ 66 (230)
T TIGR00007 1 IIPAIDIK---DGKCVRLYQGDYDK--------ETVYGDDPVEAAKKWEEEGAERIHVVDLDGAKEG---GPVNLPVIKK 66 (230)
T ss_pred CEeEEEee---CCEEEEeeccccCc--------ceEecCCHHHHHHHHHHcCCCEEEEEeCCccccC---CCCcHHHHHH
Confidence 69999999 99998 89999854 3334579999999999999999999999998543 3568999999
Q ss_pred HhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeE
Q 045794 349 TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAV 428 (578)
Q Consensus 349 i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~i 428 (578)
+++.+++|+++|||||+.+| +++++++||++|++||.++++ |+.+.+++++||+++|
T Consensus 67 i~~~~~~pi~~ggGI~~~ed-----------~~~~~~~Ga~~vvlgs~~l~d------------~~~~~~~~~~~g~~~i 123 (230)
T TIGR00007 67 IVRETGVPVQVGGGIRSLED-----------VEKLLDLGVDRVIIGTAAVEN------------PDLVKELLKEYGPERI 123 (230)
T ss_pred HHHhcCCCEEEeCCcCCHHH-----------HHHHHHcCCCEEEEChHHhhC------------HHHHHHHHHHhCCCcE
Confidence 99999999999999999977 999999999999999999985 4778999999999999
Q ss_pred EEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC
Q 045794 429 VVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG 508 (578)
Q Consensus 429 v~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G 508 (578)
++|+|+|.+ ++.++||.+.+..++.++++.+++.|++++++|+++++|+..|
T Consensus 124 ~~sid~~~~----------------------------~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g 175 (230)
T TIGR00007 124 VVSLDARGG----------------------------EVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSG 175 (230)
T ss_pred EEEEEEECC----------------------------EEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCC
Confidence 999999864 5778999998888999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHH
Q 045794 509 FDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQ 563 (578)
Q Consensus 509 ~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~ 563 (578)
+|+++++++++.+++||+++|||++.+|++++++ .||+||++|+++|.+.++++
T Consensus 176 ~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~-~Gadgv~ig~a~~~~~~~~~ 229 (230)
T TIGR00007 176 PNFELTKELVKAVNVPVIASGGVSSIDDLIALKK-LGVYGVIVGKALYEGKITLE 229 (230)
T ss_pred CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-CCCCEEEEeHHHHcCCCCCC
Confidence 9999999999999999999999999999999985 99999999999999988754
No 22
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=100.00 E-value=3.2e-39 Score=322.28 Aligned_cols=232 Identities=25% Similarity=0.451 Sum_probs=210.7
Q ss_pred eEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHH
Q 045794 269 RVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLR 347 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~ 347 (578)
.||||||++ ||+|| .++|++.+ ..++..||+++|+.|++.|++++||+||++... +.+.|.++++
T Consensus 1 ~iip~idl~---~g~~v~~~~G~~~~--------~~~~~~dp~~~a~~~~~~g~d~l~v~dl~~~~~---~~~~~~~~i~ 66 (234)
T cd04732 1 IIIPAIDLK---DGKCVRLYQGDYDK--------KTVYSDDPVEVAKKWEEAGAKWLHVVDLDGAKG---GEPVNLELIE 66 (234)
T ss_pred CEEEEEEeE---CCEEEEeecccCCC--------CeEECCCHHHHHHHHHHcCCCEEEEECCCcccc---CCCCCHHHHH
Confidence 489999999 99998 88888733 345678999999999999999999999998643 2467899999
Q ss_pred HHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCe
Q 045794 348 LTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQA 427 (578)
Q Consensus 348 ~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 427 (578)
++++.+++|+++||||++.+| ++++++.|||+|++|+.++.+ |+++++++++||+++
T Consensus 67 ~i~~~~~~pv~~~GgI~~~e~-----------~~~~~~~Gad~vvigs~~l~d------------p~~~~~i~~~~g~~~ 123 (234)
T cd04732 67 EIVKAVGIPVQVGGGIRSLED-----------IERLLDLGVSRVIIGTAAVKN------------PELVKELLKEYGGER 123 (234)
T ss_pred HHHHhcCCCEEEeCCcCCHHH-----------HHHHHHcCCCEEEECchHHhC------------hHHHHHHHHHcCCce
Confidence 999999999999999999976 999999999999999999985 477899999999999
Q ss_pred EEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCC
Q 045794 428 VVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK 507 (578)
Q Consensus 428 iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~ 507 (578)
|++|+|++.+ ++.+++|.+.+..++.++++.+++.|++++++|+++++|+++
T Consensus 124 i~~sid~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~ 175 (234)
T cd04732 124 IVVGLDAKDG----------------------------KVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLS 175 (234)
T ss_pred EEEEEEeeCC----------------------------EEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccC
Confidence 9999998764 466788987778899999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 508 GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 508 G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
|+|+++++++++.+++||+++|||++.+|+.++++ .||+||++|+++|.+.+++.++.
T Consensus 176 g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~-~Ga~gv~vg~~~~~~~~~~~~~~ 233 (234)
T cd04732 176 GPNFELYKELAAATGIPVIASGGVSSLDDIKALKE-LGVAGVIVGKALYEGKITLEEAL 233 (234)
T ss_pred CCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHH-CCCCEEEEeHHHHcCCCCHHHHh
Confidence 99999999999999999999999999999999996 89999999999999999887653
No 23
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=100.00 E-value=5e-38 Score=315.59 Aligned_cols=243 Identities=49% Similarity=0.765 Sum_probs=217.1
Q ss_pred eeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHH
Q 045794 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLR 347 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~ 347 (578)
+||||+||++ +|+||...+++ ...+..||+++|+.|++.|+++||++|+++. + ..++.|+++++
T Consensus 1 ~~ii~~iD~~---~g~~v~~~~~~----------~~~~~~d~~~~a~~~~~~G~~~i~i~d~~~~--~-~~~~~~~~~i~ 64 (243)
T cd04731 1 KRIIPCLDVK---DGRVVKGVNFK----------NLRDAGDPVELAKRYNEQGADELVFLDITAS--S-EGRETMLDVVE 64 (243)
T ss_pred CeEEEEEEEE---CCeEEEeEccc----------cceeCCCHHHHHHHHHHCCCCEEEEEcCCcc--c-ccCcccHHHHH
Confidence 5899999999 99987444433 3345679999999999999999999999974 2 23477999999
Q ss_pred HHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCe
Q 045794 348 LTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQA 427 (578)
Q Consensus 348 ~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 427 (578)
++++++++||+++|||++.+| ++++++.|++.|++|+.++.+ |+++.++.++|++++
T Consensus 65 ~i~~~~~~pv~~~GGI~s~~d-----------~~~~l~~G~~~v~ig~~~~~~------------p~~~~~i~~~~~~~~ 121 (243)
T cd04731 65 RVAEEVFIPLTVGGGIRSLED-----------ARRLLRAGADKVSINSAAVEN------------PELIREIAKRFGSQC 121 (243)
T ss_pred HHHHhCCCCEEEeCCCCCHHH-----------HHHHHHcCCceEEECchhhhC------------hHHHHHHHHHcCCCC
Confidence 999999999999999999977 999999999999999999985 477899999999899
Q ss_pred EEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCC
Q 045794 428 VVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK 507 (578)
Q Consensus 428 iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~ 507 (578)
++++||++.+.. . .+++.++||.+.+..+..++++.+++.|+++|++|+++++|+++
T Consensus 122 i~~~ld~k~~~~-------------------~----~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~ 178 (243)
T cd04731 122 VVVSIDAKRRGD-------------------G----GYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKK 178 (243)
T ss_pred EEEEEEeeecCC-------------------C----ceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCC
Confidence 999999986421 0 14899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 508 GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 508 G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
|+|+++++++++.+++|||++|||++++|+.++++..||++|++|+++|++.+.+++++++|++.
T Consensus 179 g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~~~~~~~~~ 243 (243)
T cd04731 179 GYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAELKEYLAER 243 (243)
T ss_pred CCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHHHHHHHhhC
Confidence 99999999999999999999999999999999997569999999999999999999999999763
No 24
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-38 Score=297.08 Aligned_cols=201 Identities=48% Similarity=0.873 Sum_probs=183.7
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
++|+|+||++||+.++.++|++.|+++.+.+.++++..+|+||+||=|.+...+..+++.++.+.|+++++.++|+||||
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~~AD~liLPGVGaf~~am~~L~~~gl~~~i~~~~~~~kP~LGIC 81 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEILKADKLILPGVGAFGAAMANLRERGLIEAIKEAVESGKPFLGIC 81 (204)
T ss_pred CEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHHhhCCEEEecCCCCHHHHHHHHHhcchHHHHHHHHhcCCCEEEEe
Confidence 56999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCC-eEEEEEeeeeeecCCCCCCc
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGD-HHVYFVHSYRAMPSDDNKEW 206 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~-~~~~~~H~~~v~~~~~~~~~ 206 (578)
+|||||...++|++...|||++++++.+|..+ ..+.||+||+++.+.+++++|.++++ .++|++|||++.+.. ...
T Consensus 82 lGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~-~~kvPHMGWN~l~~~~~~~l~~gi~~~~~~YFVHSY~~~~~~--~~~ 158 (204)
T COG0118 82 LGMQLLFERSEEGGGVKGLGLIPGKVVRFPAE-DLKVPHMGWNQVEFVRGHPLFKGIPDGAYFYFVHSYYVPPGN--PET 158 (204)
T ss_pred HhHHhhhhcccccCCCCCcceecceEEEcCCC-CCCCCccccceeeccCCChhhcCCCCCCEEEEEEEEeecCCC--Cce
Confidence 99999999998887779999999999999876 47899999999999978899999984 899999999987622 344
Q ss_pred EEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhc
Q 045794 207 VSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPK 251 (578)
Q Consensus 207 ~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~ 251 (578)
+.+.++++..+..++..+|++|+|||||.++..+..+++||++++
T Consensus 159 v~~~~~YG~~f~AaV~k~N~~g~QFHPEKSg~~Gl~lL~NFl~~~ 203 (204)
T COG0118 159 VVATTDYGEPFPAAVAKDNVFGTQFHPEKSGKAGLKLLKNFLEWI 203 (204)
T ss_pred EEEeccCCCeeEEEEEeCCEEEEecCcccchHHHHHHHHHHHhhc
Confidence 566688887798999999999999999999999999999999875
No 25
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=100.00 E-value=1e-37 Score=311.13 Aligned_cols=231 Identities=44% Similarity=0.691 Sum_probs=203.7
Q ss_pred ccceeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhH
Q 045794 265 KLAKRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPML 343 (578)
Q Consensus 265 ~~~~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~ 343 (578)
|...||||+||++ +|++| ++++.. . .+..||+++|+.|++.|++++|++||++... +.+.|+
T Consensus 1 ~~~~~ii~~iD~~---~g~~V~~~~~~~----------~-~~~~dp~~~a~~~~~~g~~~i~i~dl~~~~~---~~~~n~ 63 (232)
T TIGR03572 1 MLKKRIIPCLLLK---DGRLVKTVQFKD----------P-RYIGDPVNAARIYNAKGADELIVLDIDASKR---GREPLF 63 (232)
T ss_pred CCCceEEEEEEEE---CCeEEEeeccCC----------C-eECCCHHHHHHHHHHcCCCEEEEEeCCCccc---CCCCCH
Confidence 5678999999999 89877 444322 1 1356999999999999999999999999632 347889
Q ss_pred HHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhC
Q 045794 344 QVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY 423 (578)
Q Consensus 344 ~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (578)
++++++++++++|+++|||||+++| ++++++.|+++|++||+++++ |++++++.++|
T Consensus 64 ~~~~~i~~~~~~pv~~~ggi~~~~d-----------~~~~~~~G~~~vilg~~~l~~------------~~~~~~~~~~~ 120 (232)
T TIGR03572 64 ELISNLAEECFMPLTVGGGIRSLED-----------AKKLLSLGADKVSINTAALEN------------PDLIEEAARRF 120 (232)
T ss_pred HHHHHHHHhCCCCEEEECCCCCHHH-----------HHHHHHcCCCEEEEChhHhcC------------HHHHHHHHHHc
Confidence 9999999999999999999999977 999999999999999999985 47789999999
Q ss_pred CCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC
Q 045794 424 GNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD 503 (578)
Q Consensus 424 g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d 503 (578)
|+++|++++|++.+.+ + ..|++.++||++.+..++.++++.+++.|++++++|+++++
T Consensus 121 ~~~~i~vsld~~~~~~-------------------~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~ 178 (232)
T TIGR03572 121 GSQCVVVSIDVKKELD-------------------G---SDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRD 178 (232)
T ss_pred CCceEEEEEEeccCCC-------------------C---CcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 9888999999987411 0 01579999999988999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 504 GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 504 G~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
|+.+|+|+++++++++.+++|||++||+++++|+.++++..||+||++|+|||+
T Consensus 179 g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h~ 232 (232)
T TIGR03572 179 GTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLFHF 232 (232)
T ss_pred CCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhhC
Confidence 999999999999999999999999999999999999444699999999999995
No 26
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=100.00 E-value=6.4e-33 Score=271.22 Aligned_cols=200 Identities=38% Similarity=0.701 Sum_probs=171.5
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
++|+|+||+.||+.++.++|+.+|+++.+++.++++.++|+||+||++++...+..+++.++.+.++++++.++|+||||
T Consensus 2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~~~l~~~d~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIC 81 (210)
T CHL00188 2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSESELAQVHALVLPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGIC 81 (210)
T ss_pred cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCHHHhhhCCEEEECCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEEC
Confidence 46999999999999999999999999999998888889999999999988777777877788899999999999999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccC------CcccccCC-CeEEEEEeeeeeecC
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKD------SEILDDVG-DHHVYFVHSYRAMPS 200 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~------~~l~~~l~-~~~~~~~H~~~v~~~ 200 (578)
+|||+|++.+.+ +...|++++++++.++...+..+.||+||.++.++.+ +++|++++ ...+|++|++.+.+
T Consensus 82 lG~Qll~~~~~~-~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~~v~~~HS~~v~p- 159 (210)
T CHL00188 82 LGLHLLFETSEE-GKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLNPWAYFVHSYGVMP- 159 (210)
T ss_pred HHHHHHhhcccc-CCcCCccceeEEEEECCCCCCCccCccCCccceecCCcccccCChhhcCCCCCCEEEEeCccEecC-
Confidence 999999987544 4568999999999997543345789999999998765 56888887 78999999998752
Q ss_pred CCCCCcEEEEeecC-CceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhh
Q 045794 201 DDNKEWVSSTCNYG-DNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHP 250 (578)
Q Consensus 201 ~~~~~~~~~~~~~~-d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~ 250 (578)
.....+.++..++ +.++++++.+++||+|||||++...+..+++||++.
T Consensus 160 -~~~~~l~~t~~~~~~~~v~a~~~~~i~GvQFHPE~s~~~G~~il~nfl~~ 209 (210)
T CHL00188 160 -KSQACATTTTFYGKQQMVAAIEYDNIFAMQFHPEKSGEFGLWLLREFMKK 209 (210)
T ss_pred -CCCceEEEEEecCCcceEEEEecCCEEEEecCCccccHhHHHHHHHHHhh
Confidence 2234456666675 688999998899999999999977999999999864
No 27
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=100.00 E-value=4.4e-32 Score=260.04 Aligned_cols=187 Identities=40% Similarity=0.772 Sum_probs=160.6
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEech
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLG 129 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG 129 (578)
|+|+||++||+.++.++|++.|+++.+++.++++.++|+|||||++++..++.++++.++.+.|++ ..++|+||||+|
T Consensus 2 i~iidyg~gN~~s~~~al~~~g~~~~~v~~~~~l~~~D~lIlPG~g~~~~~~~~L~~~gl~~~i~~--~~g~PvlGIClG 79 (192)
T PRK13142 2 IVIVDYGLGNISNVKRAIEHLGYEVVVSNTSKIIDQAETIILPGVGHFKDAMSEIKRLNLNAILAK--NTDKKMIGICLG 79 (192)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCEEEEeCHHHhccCCEEEECCCCCHHHHHHHHHHCCcHHHHHH--hCCCeEEEECHH
Confidence 899999999999999999999999999999999999999999999988888888887788888988 568999999999
Q ss_pred HHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcEEE
Q 045794 130 LQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSS 209 (578)
Q Consensus 130 ~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~~~ 209 (578)
||+|+..+.+ +...|||++|++|.+|.. ..+.||+||+.+.. ..++++ ..+|++|+|++. . .....+
T Consensus 80 mQlL~~~~~e-g~~~GLgll~~~V~rf~~--~~~vph~GWn~~~~--~~~l~~----~~~yFVhSy~v~-~---~~~v~~ 146 (192)
T PRK13142 80 MQLMYEHSDE-GDASGLGFIPGNISRIQT--EYPVPHLGWNNLVS--KHPMLN----QDVYFVHSYQAP-M---SENVIA 146 (192)
T ss_pred HHHHhhhccc-CCcCccCceeEEEEECCC--CCCCCcccccccCC--CCcccc----cEEEEECCCeEC-C---CCCEEE
Confidence 9999998866 456799999999999864 36789999998753 334443 478999999883 2 234567
Q ss_pred EeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhc
Q 045794 210 TCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPK 251 (578)
Q Consensus 210 ~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~ 251 (578)
.+.++..++.+++++|++|+|||||.+.+.+.+|+++|++-+
T Consensus 147 ~~~yg~~~~~~v~~~n~~g~QFHPEkS~~~G~~ll~nf~~~~ 188 (192)
T PRK13142 147 YAQYGADIPAIVQFNNYIGIQFHPEKSGTYGLQILRQAIQGG 188 (192)
T ss_pred EEECCCeEEEEEEcCCEEEEecCcccCcHhHHHHHHHHHhcc
Confidence 777776688888899999999999999989999999998754
No 28
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.98 E-value=2.6e-31 Score=259.30 Aligned_cols=197 Identities=40% Similarity=0.766 Sum_probs=164.5
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHH-HhCCCCEEEEec
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAY-IEKDRPFLGICL 128 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~-~~~g~PIlGICl 128 (578)
|+|+|||.+|..++.++|++.|+++.+++.++++.++|+|||||++++.+++..++..++...++++ .+.++|+||||+
T Consensus 2 i~iid~g~~n~~~v~~~l~~~g~~~~~~~~~~~l~~~d~lilPG~g~~~~~~~~l~~~~~~~~l~~~~~~~~~pvlGiC~ 81 (201)
T PRK13152 2 IALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICL 81 (201)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCeEEEECCHHHHcCCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHhCCCcEEEECH
Confidence 8999999999999999999999999999999889999999999999888877777766777777775 478999999999
Q ss_pred hHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCcE
Q 045794 129 GLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEWV 207 (578)
Q Consensus 129 G~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~~ 207 (578)
|||+|+.+..+++...++|++++++.++........+++||+++++..+++++++++ +..++++|++++...+ ...
T Consensus 82 G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~~~v~~~~~~~l~~~l~~~~~~~~vHS~~v~~~~---~~v 158 (201)
T PRK13152 82 GMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEILKQSPLYQGIPEKSDFYFVHSFYVKCKD---EFV 158 (201)
T ss_pred hHHHHhhcccccCCcCCcccccEEEEECCCCCCCcCCccCeEEEEECCCChhhhCCCCCCeEEEEcccEeecCC---CcE
Confidence 999999975555667889999999987643212346799999999988899998887 6789999999997643 223
Q ss_pred EEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 208 SSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 208 ~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
.+...++..++++++.++++|+|||||++...+..||++|++
T Consensus 159 ~a~~~~g~~~~~a~~~~~i~GvQFHPE~~~~~g~~ll~~Fl~ 200 (201)
T PRK13152 159 SAKAQYGHKFVASLQKDNIFATQFHPEKSQNLGLKLLENFAR 200 (201)
T ss_pred EEEECCCCEEEEEEecCCEEEEeCCCeecChhhHHHHHHHHh
Confidence 444444445777888889999999999987788999999986
No 29
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.98 E-value=5.3e-31 Score=255.87 Aligned_cols=194 Identities=40% Similarity=0.723 Sum_probs=160.8
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
++|+|+||++||..++.++|++.|+++++++.++++.++|+|||||++.+..++..+++..+.+.+++ .++||||||
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~~~~~d~iIlPG~G~~~~~~~~l~~~~l~~~i~~---~~~PilGIC 77 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDVILAADKLFLPGVGTAQAAMDQLRERELIDLIKA---CTQPVLGIC 77 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHHhCCCCEEEECCCCchHHHHHHHHHcChHHHHHH---cCCCEEEEC
Confidence 46999999999999999999999999999999988999999999999888888887776666666665 479999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCc
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEW 206 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~ 206 (578)
+|||+|+.++.+++...++|++++++.++... ..+.|++||+++.+..++++++.++ ...+|++|++.+. .. ..
T Consensus 78 lG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~~-~~~~p~~G~~~v~~~~~~~l~~~l~~~~~v~~~Hs~~lp---~~-~~ 152 (196)
T PRK13170 78 LGMQLLGERSEESGGVDCLGIIDGPVKKMTDF-GLPLPHMGWNQVTPQAGHPLFQGIEDGSYFYFVHSYAMP---VN-EY 152 (196)
T ss_pred HHHHHHhhhcccCCCCCCcccccEEEEECCCC-CCCCCccccceeEeCCCChhhhCCCcCCEEEEECeeecC---CC-Cc
Confidence 99999999876554467899999999886432 3567899999999888888998887 7899999998652 22 23
Q ss_pred EEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 207 VSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 207 ~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
..+++..+..+...++.+++||+|||||++...+..++++|++
T Consensus 153 ~la~s~~~~~~~~~~~~~~i~G~QFHPE~~~~~G~~~l~nfl~ 195 (196)
T PRK13170 153 TIAQCNYGEPFSAAIQKDNFFGVQFHPERSGAAGAQLLKNFLE 195 (196)
T ss_pred EEEEecCCCeEEEEEEcCCEEEEECCCCCcccccHHHHHHHhh
Confidence 4455544445555566789999999999998899999999986
No 30
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=7.1e-31 Score=256.80 Aligned_cols=197 Identities=39% Similarity=0.703 Sum_probs=161.8
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEech
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLG 129 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG 129 (578)
|+|+|||+||+.++.++++..+.++.+++.++++.++|+||+||++++..++..+++.++.+.++++++.++|+||||+|
T Consensus 2 i~iidyg~gNl~s~~~al~~~~~~~~~~~~~~~l~~~d~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pilGiC~G 81 (210)
T PRK14004 2 IAILDYGMGNIHSCLKAVSLYTKDFVFTSDPETIENSKALILPGDGHFDKAMENLNSTGLRSTIDKHVESGKPLFGICIG 81 (210)
T ss_pred EEEEECCCchHHHHHHHHHHcCCeEEEECCHHHhccCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHcCCCEEEECHh
Confidence 89999999999999999999999999999999999999999999999888888887778999999999999999999999
Q ss_pred HHHHhhhcccCC------CcCCCcccCceeeeecCCCCCCcceeeeEEEEEc--cCCcccccCC-CeEEEEEeeeeeecC
Q 045794 130 LQLLFQSSEENG------PVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQIT--KDSEILDDVG-DHHVYFVHSYRAMPS 200 (578)
Q Consensus 130 ~QlLa~a~~e~~------~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~--~~~~l~~~l~-~~~~~~~H~~~v~~~ 200 (578)
||+|+.++.|.+ ...|||++++++++++.. ..+.||+||+++..+ ..+++|.+++ ...+|++|++....
T Consensus 82 ~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~-~~~~ph~Gw~~v~~~~~~~~~lf~~l~~~~~v~~~HS~~~~~- 159 (210)
T PRK14004 82 FQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGK-DFKVPHIGWNRLQIRRKDKSKLLKGIGDQSFFYFIHSYRPTG- 159 (210)
T ss_pred HHHHHHhcccccCCCcCcccCCcceeEEEEEEcCCC-CCcCCccCcccceeccCCCCccccCCCCCCEEEEeceeecCC-
Confidence 999999887532 367999999999987532 357899999999876 4567888887 78999999985422
Q ss_pred CCCCCcEEEEeecCC-ce-EEEE-EeCCEEEEeeCCcccCcchHHHHHHHhhhc
Q 045794 201 DDNKEWVSSTCNYGD-NF-IASV-RRGNVHAVQFHPEKSGDVGLSVLRRFLHPK 251 (578)
Q Consensus 201 ~~~~~~~~~~~~~~d-~~-iegi-~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~ 251 (578)
......+..+.. +. ..++ ..+++||+|||||++...+..|+++|++.+
T Consensus 160 ---~~~l~~sa~~~~~g~~~~a~~~~~~i~GvQFHPE~s~~~G~~iL~nfl~~~ 210 (210)
T PRK14004 160 ---AEGNAITGLCDYYQEKFPAVVEKENIFGTQFHPEKSHTHGLKLLENFIEFV 210 (210)
T ss_pred ---CCcceEEEeeeECCEEEEEEEecCCEEEEeCCcccCchhHHHHHHHHHhhC
Confidence 111222222221 22 2334 467999999999998888999999999854
No 31
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=1.3e-30 Score=255.52 Aligned_cols=201 Identities=42% Similarity=0.771 Sum_probs=162.2
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCC--eEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHH-HhCCCCEE
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGF--GIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAY-IEKDRPFL 124 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv--~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~-~~~g~PIl 124 (578)
++|+|+|||+|+..++.++|++.|+ ++.+++.++++.++|+|||||++.+..++.+++..++.+.+.+. .+.++|+|
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Pvl 81 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAVAAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFL 81 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHhcCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEE
Confidence 5799999999999999999999998 88889988899999999999998777666666655555555554 46899999
Q ss_pred EEechHHHHhhhcccCCCcCCCcccCceeeeecC-CCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCC
Q 045794 125 GICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDS-SNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 125 GIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~-~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~ 202 (578)
|||+|||+|+....|++...|+|++++++.++.+ ....+.|++||+++.+..++++|.+++ .+.++++|++.+...+
T Consensus 82 GiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G~~~v~~~~~~~lf~~~~~~~~v~~~Hs~~v~~~~- 160 (209)
T PRK13146 82 GICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMGWNTVDQTRDHPLFAGIPDGARFYFVHSYYAQPAN- 160 (209)
T ss_pred EECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccChHHeeeCCCChhccCCCCCCEEEEEeEEEEEcCC-
Confidence 9999999999986666678899999999988521 112357899999999988889999887 7899999999987554
Q ss_pred CCCcEEEEeecCCceEEEEE-eCCEEEEeeCCcccCcchHHHHHHHhhhc
Q 045794 203 NKEWVSSTCNYGDNFIASVR-RGNVHAVQFHPEKSGDVGLSVLRRFLHPK 251 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~-~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~ 251 (578)
...+.+++..+.. ++++. .+++||+|||||++...+..|+++|++..
T Consensus 161 -~~~~la~s~~~~~-~~a~~~~~~i~GvQFHPE~s~~~G~~ll~nfl~~~ 208 (209)
T PRK13146 161 -PADVVAWTDYGGP-FTAAVARDNLFATQFHPEKSQDAGLALLRNFLAWL 208 (209)
T ss_pred -CCcEEEEEcCCCE-EEEEEecCCEEEEEcCCcccHHHHHHHHHHHHhhc
Confidence 2345555544333 34444 67999999999998778999999999763
No 32
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=5.4e-30 Score=249.68 Aligned_cols=196 Identities=50% Similarity=0.861 Sum_probs=163.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEech
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLG 129 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG 129 (578)
|+|+|||++|..++.++|+++|++++++..++++.++|+||+|||+++...+.++...++.+.++++++.++|+||||+|
T Consensus 2 i~vid~g~gn~~~~~~~l~~~g~~v~~~~~~~~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G 81 (199)
T PRK13181 2 IAIIDYGAGNLRSVANALKRLGVEAVVSSDPEEIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLG 81 (199)
T ss_pred EEEEeCCCChHHHHHHHHHHCCCcEEEEcChHHhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHh
Confidence 89999999999999999999999999998888899999999999887766666666567888999999999999999999
Q ss_pred HHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCcEE
Q 045794 130 LQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEWVS 208 (578)
Q Consensus 130 ~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~~~ 208 (578)
||+|+.++.+ +...|+|++++++.+.... ..+.+++||+.+.+..++++++.++ ...++.+|++++.+.+. ....
T Consensus 82 ~Qll~~~~~~-~~~~glg~l~~~v~~~~~~-~~~~~~~G~~~v~~~~~~~lf~~l~~~~~~~~~Hs~~v~~~~~--~~~l 157 (199)
T PRK13181 82 MQLLFESSEE-GNVKGLGLIPGDVKRFRSE-PLKVPQMGWNSVKPLKESPLFKGIEEGSYFYFVHSYYVPCEDP--EDVL 157 (199)
T ss_pred HHHhhhhccc-CCcCCcceEEEEEEEcCCC-CCCCCccCccccccCCCChhHcCCCCCCEEEEeCeeEeccCCc--ccEE
Confidence 9999998765 3567899999999875321 1345789999998887888998887 67889999998865443 2445
Q ss_pred EEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 209 STCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 209 ~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
+++..+..++++++.+++||+|||||++...+..++++|++
T Consensus 158 A~s~~~~~~~~~~~~~~i~GvQFHPE~~~~~g~~ll~nfl~ 198 (199)
T PRK13181 158 ATTEYGVPFCSAVAKDNIYAVQFHPEKSGKAGLKLLKNFAE 198 (199)
T ss_pred EEEcCCCEEEEEEECCCEEEEECCCccCCHHHHHHHHHHHh
Confidence 55554455666777889999999999987788999999986
No 33
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.97 E-value=3e-29 Score=244.23 Aligned_cols=197 Identities=51% Similarity=0.934 Sum_probs=157.2
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEech
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLG 129 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG 129 (578)
|+|+|+|++|..++.++|+++|+++++++..+++.++|+||||||+.+......+...++.+.++++.+.++||||||+|
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G 80 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEEILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLG 80 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHHhccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHH
Confidence 58999999999999999999999999999888899999999999876655444454456788999999999999999999
Q ss_pred HHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCcEE
Q 045794 130 LQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEWVS 208 (578)
Q Consensus 130 ~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~~~ 208 (578)
||+|+.++.+++...++|++++++.+..+....+.+++||+.+..+.++++|.+++ .+.++++|++++...+. ....
T Consensus 81 ~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~v~~~~~~~lf~~l~~~~~v~~~Hs~~v~~~~~--~~~l 158 (198)
T cd01748 81 MQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEITKESPLFKGIPDGSYFYFVHSYYAPPDDP--DYIL 158 (198)
T ss_pred HHHhccccccCCCCCCCCCcceEEEECCCCCCceEEEeccceEEECCCChhhhCCCCCCeEEEEeEEEEecCCc--ceEE
Confidence 99999987666667889999999987321000124689999999988888998887 68999999999875432 3344
Q ss_pred EEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHh
Q 045794 209 STCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFL 248 (578)
Q Consensus 209 ~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl 248 (578)
+++..+..+....+.+++||+|||||++...+..++++|+
T Consensus 159 a~s~~~~~~~~~~~~~~i~GvQFHPE~~~~~g~~~~~nf~ 198 (198)
T cd01748 159 ATTDYGGKFPAAVEKDNIFGTQFHPEKSGKAGLKLLKNFL 198 (198)
T ss_pred EEecCCCeEEEEEEcCCEEEEECCCccccHhHHHHHHhhC
Confidence 4443333333334467999999999998778899999995
No 34
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=99.96 E-value=8.8e-29 Score=229.75 Aligned_cols=224 Identities=20% Similarity=0.278 Sum_probs=187.2
Q ss_pred eeEEEeeeEeecCCCCEEEEecceeeeeeccc-cccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTK-ENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~-~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
|++||+|||+ +|+||+-||- ++++|.| ++..+.++||+++|+.+...|++.+|++|||++.+ .+.|.++|
T Consensus 1 m~vi~viDik---~g~vV~gKsg--~re~Y~Pis~~~~~s~dP~eia~~lr~rgar~vYiADLdaI~g----~g~n~d~i 71 (229)
T COG1411 1 MKVIFVIDIK---DGKVVVGKSG--EREEYRPISSRYCLSDDPLEIAEALRERGARFVYIADLDAILG----GGDNADTI 71 (229)
T ss_pred CceEEEEEec---cCcEEeccCC--CcccccCcceeecCCCChHHHHHHHhhccCceEEeeehHHHhc----CCCcHHHH
Confidence 5899999999 9997743333 3467988 57677789999999999999999999999999864 36789999
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
+++.... +++++-|+|++++ .++.+.. +++.+++|..+++- ++.++ .
T Consensus 72 ~~l~~~~--~~ivD~Gv~dL~s-----------~~~~l~~-~~~~vv~TEt~e~~------------e~~e~-------~ 118 (229)
T COG1411 72 RELSSLE--KVIVDVGVRDLES-----------HAHRLIP-AETAVVGTETLEDT------------EEDEE-------G 118 (229)
T ss_pred HHHHhhh--hheeecccccccC-----------HHHhcCC-Ccceeeccchhhhh------------hhhhc-------c
Confidence 9998754 4789999998876 7777754 88999999999852 22222 5
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
++++|+|+|.+.+. .-|.+ +.++..+.+....---+|+.|+.+.|++
T Consensus 119 r~vvslD~k~~~Ll-----------------------------~~~~e----d~le~Vk~l~~~~~~~lIvLDi~aVGt~ 165 (229)
T COG1411 119 RIVVSLDVKGGELL-----------------------------GPWLE----DFLETVKDLNYRRDPGLIVLDIGAVGTK 165 (229)
T ss_pred ceEEEEecCCCeec-----------------------------CCCch----hHHHHHHHHhccCCCCeEEEEccccccc
Confidence 89999999987553 12322 4678888888887788999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHH
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKE 567 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~ 567 (578)
+|||.+++..+......||+.+|||+.+||+..++. +|++||++|+|+|.|.++++..+.
T Consensus 166 ~G~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~~-~Gv~gvLvaTalh~G~vple~~~~ 225 (229)
T COG1411 166 SGPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLG-MGVSGVLVATALHEGVVPLEVEQA 225 (229)
T ss_pred cCCCHHHHHHHHHhccCceeecCCcCcHHHHHHHhc-CCCceeeehhhhhcCcCcHHHHhc
Confidence 999999999999999999999999999999999986 999999999999999999887653
No 35
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=3.3e-28 Score=238.15 Aligned_cols=200 Identities=47% Similarity=0.863 Sum_probs=160.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEech
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLG 129 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG 129 (578)
|+|+|++.+|..++.++|+++|+++.+++.++++.++|+||||||+.+.+....+...++.++|+++.+.++|+||||+|
T Consensus 2 i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~~~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G 81 (205)
T PRK13141 2 IAIIDYGMGNLRSVEKALERLGAEAVITSDPEEILAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLG 81 (205)
T ss_pred EEEEEcCCchHHHHHHHHHHCCCeEEEECCHHHhccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHH
Confidence 89999999999999999999999999999888899999999999876655555544456788999999999999999999
Q ss_pred HHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCcEE
Q 045794 130 LQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEWVS 208 (578)
Q Consensus 130 ~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~~~ 208 (578)
+|+|+..+.+.+...++|++++++.+.........++.|++.+.++.++++++.++ ...++.+|++++...+ ...+.
T Consensus 82 ~Qll~~~~~~~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~~i~~~~~~~l~~~l~~~~~v~~~Hs~~v~~~~--~~~v~ 159 (205)
T PRK13141 82 MQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLELKKESPLLKGIPDGAYVYFVHSYYADPCD--EEYVA 159 (205)
T ss_pred HHHhhhccccCCCCCccceEEEEEEEcCCCCCCcccEecCccceeCCCChhhhCCCCCCEEEEECeeEeccCC--cCeEE
Confidence 99999976554567789999999887431112346788999999888889998887 6788999999986432 22333
Q ss_pred EEeecCCceEEEEE-eCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 209 STCNYGDNFIASVR-RGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 209 ~~~~~~d~~iegi~-~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
+....+ ..++++. .+++||+|||||+....+..+|++|++.++
T Consensus 160 a~~~~~-~~~~a~~~~~~i~GvQfHPE~~~~~g~~l~~~fl~~~~ 203 (205)
T PRK13141 160 ATTDYG-VEFPAAVGKDNVFGAQFHPEKSGDVGLKILKNFVEMVE 203 (205)
T ss_pred EEEeCC-cEEEEEEecCCEEEEeCCCccchHHHHHHHHHHHHHhh
Confidence 433322 3455555 569999999999987788999999998763
No 36
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.96 E-value=2.8e-28 Score=236.95 Aligned_cols=194 Identities=43% Similarity=0.787 Sum_probs=155.5
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEech
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLG 129 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG 129 (578)
|+|+|++.+|..++.++|+.+|+++++++.+++++++|+||+||++++...+.++....+...++++++.++|+||||+|
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~~~l~~~d~lii~G~~~~~~~~~~l~~~~~~~l~~~~~~~~~pvlGiC~G 80 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDSKEAELADKLILPGVGAFGAAMARLRENGLDLFVELVVRLGKPVLGICLG 80 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCHHHhccCCEEEECCCCCHHHHHHHHHHcCcHHHHHHHHhCCCCEEEECHH
Confidence 57999999999999999999999999999888889999999999776655555665433333447788899999999999
Q ss_pred HHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCcEE
Q 045794 130 LQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEWVS 208 (578)
Q Consensus 130 ~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~~~ 208 (578)
||+|+.++.+++...|+|++++++.+... ...+++||..+.....++++++++ .+.++++|++.+...+ ....
T Consensus 81 ~Qll~~~~~~~~~~~glg~~~~~v~~~~~---~~~~~~g~~~~~~~~~~~l~~~l~~~~~v~~~Hs~~v~~~~---~~~~ 154 (196)
T TIGR01855 81 MQLLFERSEEGGGVPGLGLIKGNVVKLEA---RKVPHMGWNEVHPVKESPLLNGIDEGAYFYFVHSYYAVCEE---EAVL 154 (196)
T ss_pred HHHhhhccccCCCCCCcceeeEEEEECCC---CCCCcccCeeeeeCCCChHHhCCCCCCEEEEECeeEecCCC---CcEE
Confidence 99999987666678899999999877321 146789999998888888998887 6899999999886433 2333
Q ss_pred EEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 209 STCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 209 ~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
+..+.+..+...++.+++||+|||||++...+..++++|++
T Consensus 155 a~~~~g~~~~~~~~~~~i~GvQFHPE~~~~~g~~ll~~f~~ 195 (196)
T TIGR01855 155 AYADYGEKFPAAVQKGNIFGTQFHPEKSGKTGLKLLENFLE 195 (196)
T ss_pred EEEcCCcEEEEEEecCCEEEEECCCccCcHhHHHHHHHHHh
Confidence 43333334445556789999999999987788999999986
No 37
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=4.9e-28 Score=235.97 Aligned_cols=199 Identities=45% Similarity=0.863 Sum_probs=156.9
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
++|+|+|+++++..++.++|+++|+++.+++.+.++.++|+||||||+.+.....++. .+.+.++++++.++|+||||
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~d~iii~G~~~~~~~~~~~~--~~~~~i~~~~~~~~PilgIC 78 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEEILDADGIVLPGVGAFGAAMENLS--PLRDVILEAARSGKPFLGIC 78 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHHHccCCEEEECCCCCHHHHHHHHH--HHHHHHHHHHHcCCCEEEEC
Confidence 4799999999999999999999999999998887889999999999766554455554 56788999999999999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcE
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWV 207 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~ 207 (578)
+|+|+|+.++.++....++|++++++.++.+. ...+++||+.+.++.+++++++++....+.+|++++...+. ..+
T Consensus 79 ~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~--~~~~~~g~~~v~~~~~~~l~~~l~~~~~~~~Hs~~~~~~~~--~~~ 154 (200)
T PRK13143 79 LGMQLLFESSEEGGGVRGLGLFPGRVVRFPAG--VKVPHMGWNTVKVVKDCPLFEGIDGEYVYFVHSYYAYPDDE--DYV 154 (200)
T ss_pred HHHHHHhhhhccCCCCCCcceeeEEEEEcCCC--CCCCeecceEEEEcCCChhhccCCCcEEEEEeeeeeCCCCc--ceE
Confidence 99999999876666678899999998764321 33467899999988888888777766678899998864332 233
Q ss_pred EEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 208 SSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 208 ~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
.++...+.....+...+++||+|||||++...+.+||++|++.++
T Consensus 155 la~~~~~~~~~~~~~~~~~~gvQfHPE~~~~~g~~i~~~f~~~~~ 199 (200)
T PRK13143 155 VATTDYGIEFPAAVCNDNVFGTQFHPEKSGETGLKILENFVELIK 199 (200)
T ss_pred EEEEcCCCEEEEEEEcCCEEEEeCCCccchHHHHHHHHHHHHHHh
Confidence 333332223334445679999999999987778899999998764
No 38
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.93 E-value=3.7e-25 Score=213.75 Aligned_cols=177 Identities=25% Similarity=0.392 Sum_probs=134.9
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCc---cCCCCCC--EEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP---EDILNAN--RLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFL 124 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~---~dl~~~D--GlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIl 124 (578)
|+|+|+++++..++.++|+++|+++.++++. +++.++| |||||||.....+. ....+++++.+.++|+|
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~glii~Gg~~~~~~~------~~~~~i~~~~~~~~Pil 74 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYAE------NAPRADEKIFELGVPVL 74 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEEeCCCCHHHHhhcCCCEEEECCCCCCcCcC------CchHHHHHHHhCCCCEE
Confidence 5799999999999999999999999888654 3454444 99999986432221 22456778888999999
Q ss_pred EEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCC
Q 045794 125 GICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDN 203 (578)
Q Consensus 125 GIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~ 203 (578)
|||+|||+|+.+ +| +++.+ ...+++|+.++.++..++++..++ .+.++++|++.+...+.
T Consensus 75 GIC~G~Qll~~~---------lg---g~v~~------~~~~~~g~~~v~~~~~~~l~~~~~~~~~~~~~H~~~v~~l~~- 135 (188)
T TIGR00888 75 GICYGMQLMAKQ---------LG---GEVGR------AEKREYGKAELEILDEDDLFRGLPDESTVWMSHGDKVKELPE- 135 (188)
T ss_pred EECHHHHHHHHh---------cC---ceEec------CCCccceeEEEEEecCCHhhcCCCCCcEEEeEccceeecCCC-
Confidence 999999999994 22 56654 223678999999988888888877 68899999999865543
Q ss_pred CCcEEEEeecCCceEEEEEeC--CEEEEeeCCcccCc-chHHHHHHHhh-hccC
Q 045794 204 KEWVSSTCNYGDNFIASVRRG--NVHAVQFHPEKSGD-VGLSVLRRFLH-PKTN 253 (578)
Q Consensus 204 ~~~~~~~~~~~d~~iegi~~~--~i~gvQFHPE~~~~-~~~~l~~~Fl~-~~~~ 253 (578)
.+.. .....+..+++++.+ ++||+|||||++.+ ++..||++|++ .++|
T Consensus 136 -~~~v-la~~~~~~v~a~~~~~~~~~g~QfHPE~~~~~~g~~i~~~f~~~~~~~ 187 (188)
T TIGR00888 136 -GFKV-LATSDNCPVAAMAHEEKPIYGVQFHPEVTHTEYGNELLENFVYDVCGC 187 (188)
T ss_pred -CCEE-EEECCCCCeEEEEECCCCEEEEeeCCccCCChhhHHHHHHHHHHhhCC
Confidence 2222 222234678999843 89999999999764 78999999998 6555
No 39
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.93 E-value=3.6e-25 Score=224.06 Aligned_cols=177 Identities=21% Similarity=0.274 Sum_probs=132.0
Q ss_pred CCCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC---C--CCCCEEEECCC-CCchHHHHHHHhhcHHHHHHHHHh
Q 045794 45 SSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED---I--LNANRLIFPGV-GAFAAAMDVLNKTGMAEALCAYIE 118 (578)
Q Consensus 45 ~~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d---l--~~~DGlILpGG-g~~~~~~~~l~~~~l~~~i~~~~~ 118 (578)
....+|+++||| .+.|++|.|..+|+++.++++... + .++|||+|+.| |++.... ...+.++++++
T Consensus 177 ~~~~~Vv~iD~G--vK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP~~~~------~~i~~ik~l~~ 248 (368)
T COG0505 177 EPGKHVVVIDFG--VKRNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDPAPLD------YAIETIKELLG 248 (368)
T ss_pred CCCcEEEEEEcC--ccHHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCCChhHHH------HHHHHHHHHhc
Confidence 357789999976 999999999999999999987643 2 57999999887 4443222 22457888888
Q ss_pred CCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeee--EEEEEccCCcccccCCCeEEEEEeeee
Q 045794 119 KDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW--NALQITKDSEILDDVGDHHVYFVHSYR 196 (578)
Q Consensus 119 ~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~--~~i~~~~~~~l~~~l~~~~~~~~H~~~ 196 (578)
..+|+||||||||||+.+ .|+.+++++ |+++ +.+.|.... ..+ .-..++|+|.
T Consensus 249 ~~iPifGICLGHQllalA-------~Ga~T~Kmk---FGHr-G~NhPV~dl~tgrv--------------~ITSQNHGya 303 (368)
T COG0505 249 TKIPIFGICLGHQLLALA-------LGAKTYKMK---FGHR-GANHPVKDLDTGRV--------------YITSQNHGYA 303 (368)
T ss_pred cCCCeEEEcHHHHHHHHh-------cCCceeecc---cCCC-CCCcCcccccCCeE--------------EEEecCCcee
Confidence 889999999999999995 476666655 6665 444443210 111 2336899999
Q ss_pred eecCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc--chHHHHHHHhhhccCC
Q 045794 197 AMPSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD--VGLSVLRRFLHPKTNI 254 (578)
Q Consensus 197 v~~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~--~~~~l~~~Fl~~~~~~ 254 (578)
+++............+.+|+.+||+++ .|+|++|||||.+++ |...||+.|++.++..
T Consensus 304 Vd~~s~~~~~~vth~nlnDgTvEGi~h~~~P~fSVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~ 365 (368)
T COG0505 304 VDEDSLVETLKVTHVNLNDGTVEGIRHKDLPAFSVQYHPEASPGPHDTRYLFDEFIELMEAA 365 (368)
T ss_pred cChhhcCCCceeEEEeCCCCCccceecCCCceEEEccCCCCCCCCcccHHHHHHHHHHHHHh
Confidence 986532222135566778899999995 489999999999865 8899999999998764
No 40
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.93 E-value=1.3e-24 Score=210.18 Aligned_cols=178 Identities=20% Similarity=0.324 Sum_probs=134.3
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCC----ccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQT----PEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~----~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
++|+|+|+.+++.+++.++|+++|+++.+++. ++++..+|+|||+||...... .. .+.++++. ++.++|+
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~~~d~iIi~gGp~~~~~---~~--~~~~~i~~-~~~~~Pi 75 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVENFSHILISPGPDVPRA---YP--QLFAMLER-YHQHKSI 75 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhccCCEEEECCCCCChHH---hh--HHHHHHHH-hcCCCCE
Confidence 57999999999999999999999999988773 245678999998877532211 11 23456665 5678999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCC
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~ 202 (578)
||||+|||+|+.+ .| +++.++ .+.++.+|..+....+++++++++ .+.++++|++.+.....
T Consensus 76 LGIClG~Qlla~~-------~G-----g~V~~~-----~~~~~g~~~~v~~~~~~~l~~~~~~~~~v~~~Hs~~v~~~~l 138 (190)
T PRK06895 76 LGVCLGHQTLCEF-------FG-----GELYNL-----NNVRHGQQRPLKVRSNSPLFDGLPEEFNIGLYHSWAVSEENF 138 (190)
T ss_pred EEEcHHHHHHHHH-------hC-----CeEeec-----CCCccCceEEEEECCCChhhhcCCCceEEEcchhheeccccc
Confidence 9999999999995 23 566542 123455677787777888998887 68899999998864222
Q ss_pred CCCcEEEEeecCCceEEEEEeC--CEEEEeeCCcc-cCcchHHHHHHHhh
Q 045794 203 NKEWVSSTCNYGDNFIASVRRG--NVHAVQFHPEK-SGDVGLSVLRRFLH 249 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~~~--~i~gvQFHPE~-~~~~~~~l~~~Fl~ 249 (578)
+ ..+.....++++.+++++++ |+||+|||||+ ....+..++++|++
T Consensus 139 p-~~l~~~a~~~~~~i~a~~~~~~pi~GvQFHPE~~~~~~g~~il~nf~~ 187 (190)
T PRK06895 139 P-TPLEITAVCDENVVMAMQHKTLPIYGVQFHPESYISEFGEQILRNWLA 187 (190)
T ss_pred C-CCeEEEEECCCCcEEEEEECCCCEEEEEeCCCcCCCcchHHHHHHHHh
Confidence 2 33556666677889999864 59999999997 34478899999986
No 41
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.93 E-value=3.5e-24 Score=201.30 Aligned_cols=177 Identities=27% Similarity=0.386 Sum_probs=132.4
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc-C-----CCCCCEEEE-CCCCCchHHHHHHHhhc-HHHHHHHHHhC
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE-D-----ILNANRLIF-PGVGAFAAAMDVLNKTG-MAEALCAYIEK 119 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~-d-----l~~~DGlIL-pGGg~~~~~~~~l~~~~-l~~~i~~~~~~ 119 (578)
++|+++|+.+++.+|+++++++.|.++.+++.+. + ..++|+||| ||++.+.+. + ..+.|+++ ..
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~-------G~~~~~i~~~-~~ 73 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDA-------GISLELIRRF-AG 73 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHc-------chHHHHHHHh-cC
Confidence 4699999999999999999999999999887752 1 246899999 666654421 2 35667776 67
Q ss_pred CCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeee
Q 045794 120 DRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAM 198 (578)
Q Consensus 120 g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~ 198 (578)
++||||||||||.|+++ .| +++.+ .+.+-.|...........+|++++ ++.+..+||..+.
T Consensus 74 ~~PiLGVCLGHQai~~~-------fG-----g~V~~------a~~~~HGK~s~i~h~g~~iF~glp~~f~v~RYHSLvv~ 135 (191)
T COG0512 74 RIPILGVCLGHQAIAEA-------FG-----GKVVR------AKEPMHGKTSIITHDGSGLFAGLPNPFTVTRYHSLVVD 135 (191)
T ss_pred CCCEEEECccHHHHHHH-------hC-----CEEEe------cCCCcCCeeeeeecCCcccccCCCCCCEEEeeEEEEec
Confidence 79999999999999995 24 66665 223445655533344578999999 7999999999887
Q ss_pred cCCCCCCcEEEEeecCC-ceEEEEEe--CCEEEEeeCCcccC-cchHHHHHHHhhhc
Q 045794 199 PSDDNKEWVSSTCNYGD-NFIASVRR--GNVHAVQFHPEKSG-DVGLSVLRRFLHPK 251 (578)
Q Consensus 199 ~~~~~~~~~~~~~~~~d-~~iegi~~--~~i~gvQFHPE~~~-~~~~~l~~~Fl~~~ 251 (578)
+...+ ..+..++...+ +.++|+++ .|++|+|||||+.- ..+.+|++||++++
T Consensus 136 ~~~lP-~~l~vtA~~~d~~~IMai~h~~~pi~gvQFHPESilT~~G~~il~Nfl~~~ 191 (191)
T COG0512 136 PETLP-EELEVTAESEDGGVIMAVRHKKLPIYGVQFHPESILTEYGHRILENFLRLA 191 (191)
T ss_pred CCCCC-CceEEEEEeCCCCEEEEEeeCCCCEEEEecCCccccccchHHHHHHHHhhC
Confidence 63332 23444444433 58999996 48999999999854 47899999999863
No 42
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.92 E-value=1.2e-24 Score=208.85 Aligned_cols=172 Identities=23% Similarity=0.394 Sum_probs=129.6
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc-----CCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE-----DILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFL 124 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~-----dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIl 124 (578)
|+|+|+++++..++.++|+++|+++++++... ++.++||||||||.....+.. .....++..+.++|+|
T Consensus 1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgvIl~Gg~~~~~~~~------~~~~~~~~~~~~~Pil 74 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEED------APRVDPEIFELGVPVL 74 (181)
T ss_pred CEEEECCCchHHHHHHHHHhcCceEEEecCCCChhhhcccCCCEEEECCCcccccccc------cchhhHHHHhcCCCEE
Confidence 57999999999999999999999998887653 467899999999864322111 0122344455699999
Q ss_pred EEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCC
Q 045794 125 GICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDN 203 (578)
Q Consensus 125 GIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~ 203 (578)
|||+|||+|+.+ .| +++.+ ...+++|+..+..+..++++.+++ .+.++++|++.+...+..
T Consensus 75 GIC~G~Qll~~~-------~g-----g~v~~------~~~~~~G~~~v~~~~~~~l~~~~~~~~~~~~~H~~~v~~l~~~ 136 (181)
T cd01742 75 GICYGMQLIAKA-------LG-----GKVER------GDKREYGKAEIEIDDSSPLFEGLPDEQTVWMSHGDEVVKLPEG 136 (181)
T ss_pred EEcHHHHHHHHh-------cC-----CeEEe------CCCCcceEEEEEecCCChhhcCCCCceEEEcchhhhhhhcCCC
Confidence 999999999994 22 56655 223678999988888888998887 688899999987655432
Q ss_pred CCcEEEEeecCCceEEEEEeC--CEEEEeeCCcccCc-chHHHHHHHh
Q 045794 204 KEWVSSTCNYGDNFIASVRRG--NVHAVQFHPEKSGD-VGLSVLRRFL 248 (578)
Q Consensus 204 ~~~~~~~~~~~d~~iegi~~~--~i~gvQFHPE~~~~-~~~~l~~~Fl 248 (578)
....++. .+..+++++.+ ++||+|||||++.. ++..+|++|+
T Consensus 137 -~~~la~~--~~~~i~a~~~~~~~~~g~QfHPE~~~~~~g~~ll~~f~ 181 (181)
T cd01742 137 -FKVIASS--DNCPVAAIANEEKKIYGVQFHPEVTHTEKGKEILKNFL 181 (181)
T ss_pred -cEEEEeC--CCCCEEEEEeCCCcEEEEEcCCccccCcChHHHHHhhC
Confidence 1222332 35678999853 89999999999864 8899999995
No 43
>PLN02347 GMP synthetase
Probab=99.92 E-value=3.8e-24 Score=234.99 Aligned_cols=260 Identities=20% Similarity=0.287 Sum_probs=168.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCeEEEeCCc---cCCC--CCCEEEECCCCCchHHH--HHHHhhcHHHHHHHHHhCCC
Q 045794 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP---EDIL--NANRLIFPGVGAFAAAM--DVLNKTGMAEALCAYIEKDR 121 (578)
Q Consensus 49 ~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~---~dl~--~~DGlILpGGg~~~~~~--~~l~~~~l~~~i~~~~~~g~ 121 (578)
+|+|+|||+++.+++.++++++|+.++++++. +++. ++||||||||+....+. .++. ...++.+.+.++
T Consensus 12 ~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~----~~i~~~~~~~~i 87 (536)
T PLN02347 12 VVLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVEGAPTVP----EGFFDYCRERGV 87 (536)
T ss_pred EEEEEECCCcHHHHHHHHHHHCCCeEEEEECCCCHHHHhcCCCCEEEECCCCCcccccCCchhh----HHHHHHHHhcCC
Confidence 59999999999999999999999998888654 3343 68999999986433221 1221 123333345789
Q ss_pred CEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-C--eEEEEEeeeeee
Q 045794 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-D--HHVYFVHSYRAM 198 (578)
Q Consensus 122 PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~--~~~~~~H~~~v~ 198 (578)
||||||+|||+|+.+ .| +++.+. ..+++|+..+.+..++++|.+++ . ..+|++|++.+.
T Consensus 88 PILGIClG~QlLa~a-------lG-----G~V~~~------~~~e~G~~~v~i~~~~~Lf~~l~~~~~~~v~~~Hsd~V~ 149 (536)
T PLN02347 88 PVLGICYGMQLIVQK-------LG-----GEVKPG------EKQEYGRMEIRVVCGSQLFGDLPSGETQTVWMSHGDEAV 149 (536)
T ss_pred cEEEECHHHHHHHHH-------cC-----CEEEec------CCcccceEEEEEcCCChhhhcCCCCceEEEEEEEEEEee
Confidence 999999999999994 23 677652 23578999998888888998887 3 689999999886
Q ss_pred cCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccC-cchHHHHHHHh-hhccCCCCCCCcccccccceeEEEee
Q 045794 199 PSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSG-DVGLSVLRRFL-HPKTNIPKKPTEGKALKLAKRVIACL 274 (578)
Q Consensus 199 ~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~-~~~~~l~~~Fl-~~~~~~~~~~~~~~~~~~~~riIp~i 274 (578)
..|.. ....+++ .++.++++++ +++||+|||||++. ..+..|++||+ +.+++.+.+.+..-....-.++.-.
T Consensus 150 ~lP~g-~~vlA~s--~~~~iaai~~~~~~i~GvQFHPE~~~t~~G~~iL~NFl~~ic~~~~~~~~~~~~~~~i~~i~~~- 225 (536)
T PLN02347 150 KLPEG-FEVVAKS--VQGAVVAIENRERRIYGLQYHPEVTHSPKGMETLRHFLFDVCGVTADWKMQDVLEEQIELIKAT- 225 (536)
T ss_pred eCCCC-CEEEEEe--CCCcEEEEEECCCCEEEEEccCCCCccchHHHHHHHHHHHHhCcCCCcCcchHHHHHHHHHHHH-
Confidence 55532 1223333 3456799984 68999999999986 47899999998 5666666665432221111122211
Q ss_pred eEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHH-cCCCeEEEEecc-cCCCCCCCCchhHHHHHHHhh
Q 045794 275 DVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYK-EGADEISFLNIT-GFRDFPLGDLPMLQVLRLTSE 351 (578)
Q Consensus 275 Dl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~-~g~~~i~~~Dl~-~~~~~~~~~~~~~~~i~~i~~ 351 (578)
+.. +++++ ++.|.. |-.-+|....+ .| +.++-+=+| +.. ......+..+++++
T Consensus 226 -~~~--~~~vvvalSGGV----------------DSsvla~l~~~alG-~~v~av~id~g~~----~~~E~~~~~~~~a~ 281 (536)
T PLN02347 226 -VGP--DEHVICALSGGV----------------DSTVAATLVHKAIG-DRLHCVFVDNGLL----RYKEQERVMETFKR 281 (536)
T ss_pred -hcc--CCeEEEEecCCh----------------hHHHHHHHHHHHhC-CcEEEEEEeCCCC----ChhHHHHHHHHHHH
Confidence 121 35544 666643 22223333333 46 556655554 321 11223455566777
Q ss_pred hccccEE
Q 045794 352 NVFVPLT 358 (578)
Q Consensus 352 ~~~~pi~ 358 (578)
+.++++.
T Consensus 282 ~lgi~~~ 288 (536)
T PLN02347 282 DLHLPVT 288 (536)
T ss_pred HcCCcEE
Confidence 7777765
No 44
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.92 E-value=5.3e-24 Score=211.23 Aligned_cols=196 Identities=26% Similarity=0.401 Sum_probs=145.8
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHh-hcHHHHHHHHHhCCCCEEEE
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNK-TGMAEALCAYIEKDRPFLGI 126 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~-~~l~~~i~~~~~~g~PIlGI 126 (578)
++|+|+++ .|.+.+..++|+++|+++.+++.++++.++|+||||||.+ ..+..+.. .++.+.|+++++.++|+|||
T Consensus 2 m~igVLa~-qG~~~e~~~aL~~lG~ev~~v~~~~~L~~~DgLILPGGfs--~~~~~L~~~~gl~~~I~~~v~~g~PvLGi 78 (248)
T PLN02832 2 MAIGVLAL-QGSFNEHIAALRRLGVEAVEVRKPEQLEGVSGLIIPGGES--TTMAKLAERHNLFPALREFVKSGKPVWGT 78 (248)
T ss_pred cEEEEEeC-CCchHHHHHHHHHCCCcEEEeCCHHHhccCCEEEeCCCHH--HHHHHHHhhcchHHHHHHHHHcCCCEEEE
Confidence 46999999 5899999999999999999999999999999999999653 34445543 37889999999999999999
Q ss_pred echHHHHhhhcccC--CCcCCCcccCceeee---------ecCCCCCCcceeeeEEEE-------EccCCcccccCCCeE
Q 045794 127 CLGLQLLFQSSEEN--GPVNGLGLIPGVVGR---------FDSSNGFRVPQIGWNALQ-------ITKDSEILDDVGDHH 188 (578)
Q Consensus 127 ClG~QlLa~a~~e~--~~~~Glgl~~~~v~~---------~~~~~~~~~~~~G~~~i~-------~~~~~~l~~~l~~~~ 188 (578)
|+|||+|+..+.+. +....+|.++..+.+ |.. ..+.|++||+++. +.....+.. ....
T Consensus 79 C~GmqlLa~~~~~~~~~~~~~lg~Ldi~v~RN~~g~qv~sfe~--~l~ip~~gwn~~~~~~~~~vFirap~i~~--~~~~ 154 (248)
T PLN02832 79 CAGLIFLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINSFET--ELPVPELAASEGGPETFRAVFIRAPAILS--VGPG 154 (248)
T ss_pred ChhHHHHHHHhcccccCCcceeCCccceEEecccCceeEeEEc--CCcCCccccccccccccceEEecCCceEe--CCCc
Confidence 99999999987542 222335555555444 543 3678999997653 111222211 1346
Q ss_pred EEEEeeeeeecCCCCCCcEEEEeecCC-ceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccCC
Q 045794 189 VYFVHSYRAMPSDDNKEWVSSTCNYGD-NFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 189 ~~~~H~~~v~~~~~~~~~~~~~~~~~d-~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~ 254 (578)
++..|+|.+...+. ....++..++. +++.+++++|++|+|||||++++. +++++|++++...
T Consensus 155 v~~l~sy~~~~~~~--~~~~a~~~y~~~~~~~aV~qgnvlatqFHPEls~d~--rih~~Fl~~~~~~ 217 (248)
T PLN02832 155 VEVLAEYPLPSEKA--LYSSSTDAEGRDKVIVAVKQGNLLATAFHPELTADT--RWHSYFVKMVSES 217 (248)
T ss_pred EEEEEEeccccccc--ccccccccccCCceEEEEEeCCEEEEEccCccCCcc--HHHHHHHHHHHHh
Confidence 78899997654322 22344555554 788899999999999999998755 9999999998753
No 45
>PRK00758 GMP synthase subunit A; Validated
Probab=99.92 E-value=3.8e-24 Score=205.94 Aligned_cols=173 Identities=25% Similarity=0.386 Sum_probs=130.7
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCc---cCCCCC-CEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP---EDILNA-NRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLG 125 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~---~dl~~~-DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlG 125 (578)
|+|+|+++++.+++.++|+++|+++.+++.. +++.++ ||||||||++ ..+.. .+.++++ +.++||||
T Consensus 2 i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~l~~~~dgivi~Gg~~----~~~~~--~~~~~l~---~~~~PilG 72 (184)
T PRK00758 2 IVVVDNGGQYNHLIHRTLRYLGVDAKIIPNTTPVEEIKAFEDGLILSGGPD----IERAG--NCPEYLK---ELDVPILG 72 (184)
T ss_pred EEEEECCCchHHHHHHHHHHcCCcEEEEECCCCHHHHhhcCCEEEECCCCC----hhhcc--ccHHHHH---hCCCCEEE
Confidence 8999999999999999999999998887743 456778 9999999873 22221 2233443 46899999
Q ss_pred EechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCC
Q 045794 126 ICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNK 204 (578)
Q Consensus 126 IClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~ 204 (578)
||+|||+|+.+ .| +++.+ ...+++|+..+.++..++++.+++ .+.++.+|++.+...+..
T Consensus 73 IC~G~Q~L~~a-------~G-----g~v~~------~~~~~~g~~~i~~~~~~~l~~~~~~~~~~~~~H~~~v~~l~~~- 133 (184)
T PRK00758 73 ICLGHQLIAKA-------FG-----GEVGR------GEYGEYALVEVEILDEDDILKGLPPEIRVWASHADEVKELPDG- 133 (184)
T ss_pred EeHHHHHHHHh-------cC-----cEEec------CCCceeeeEEEEEcCCChhhhCCCCCcEEEeehhhhhhhCCCC-
Confidence 99999999994 22 56655 233578999998888888888777 688999999987654432
Q ss_pred CcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc-chHHHHHHHhhhcc
Q 045794 205 EWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD-VGLSVLRRFLHPKT 252 (578)
Q Consensus 205 ~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~-~~~~l~~~Fl~~~~ 252 (578)
+.......++.+++++. .++||+|||||++.. ++..||++|++.+.
T Consensus 134 --~~~la~~~~~~v~a~~~~~~~~~g~QfHPE~~~~~~g~~l~~~f~~~~~ 182 (184)
T PRK00758 134 --FEILARSDICEVEAMKHKEKPIYGVQFHPEVAHTEYGEEIFKNFLEICG 182 (184)
T ss_pred --CEEEEECCCCCEEEEEECCCCEEEEEcCCccCCCchHHHHHHHHHHHHc
Confidence 22233334467899985 469999999999754 78999999997654
No 46
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.91 E-value=4.2e-23 Score=199.32 Aligned_cols=186 Identities=28% Similarity=0.385 Sum_probs=139.3
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
|+|.|+++ .|+..+..++|+..|+++..++.++++.++||||||||.....+ .......+.+.++++.+.++|++|||
T Consensus 2 m~~~i~~~-~g~~~~~~~~l~~~g~~~~~~~~~~~l~~~dgiii~GG~~~~~~-~~~~~~~~~~~i~~~~~~g~PilGIC 79 (189)
T PRK13525 2 MKIGVLAL-QGAVREHLAALEALGAEAVEVRRPEDLDEIDGLILPGGESTTMG-KLLRDFGLLEPLREFIASGLPVFGTC 79 (189)
T ss_pred CEEEEEEc-ccCHHHHHHHHHHCCCEEEEeCChhHhccCCEEEECCCChHHHH-HHHHhccHHHHHHHHHHCCCeEEEEC
Confidence 57999998 48888888999999999999998888999999999998643221 11123356788999999999999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCc
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEW 206 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~ 206 (578)
+|+|+|+.++.+. ...|+|++++++.+.. ..+..|.... +.++.+++ .+.++++|++.+...|....
T Consensus 80 ~G~QlL~~~~gg~-~~~~lg~~~~~v~~~~-----~g~~~g~~~~-----~~~~~~~~~~~~~~~~H~d~v~~lp~~~~- 147 (189)
T PRK13525 80 AGMILLAKEIEGY-EQEHLGLLDITVRRNA-----FGRQVDSFEA-----ELDIKGLGEPFPAVFIRAPYIEEVGPGVE- 147 (189)
T ss_pred HHHHHHHhhcccC-CCCceeeEEEEEEEcc-----CCCceeeEEe-----cccccCCCCCeEEEEEeCceeeccCCCcE-
Confidence 9999999976443 5678999999987622 1233443322 23444444 67899999998876665332
Q ss_pred EEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 207 VSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 207 ~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
++++. +..+++++.+++||+|||||++.. .+||++|++.+.
T Consensus 148 vlA~~---~~~~~~~~~~~~~g~QfHPE~~~~--~~~~~~f~~~~~ 188 (189)
T PRK13525 148 VLATV---GGRIVAVRQGNILATSFHPELTDD--TRVHRYFLEMVK 188 (189)
T ss_pred EEEEc---CCEEEEEEeCCEEEEEeCCccCCC--chHHHHHHHHhh
Confidence 33332 245678888899999999999764 589999998874
No 47
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.91 E-value=4e-23 Score=200.05 Aligned_cols=176 Identities=22% Similarity=0.245 Sum_probs=125.8
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc----CC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE----DI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~----dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
|+|+|+.+++.+|+.++|+++|+++.++++.+ ++ .++|+|||+||+....+. ......++. .+.++||
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~-----~~~~~~i~~-~~~~~Pi 75 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEA-----GISLAVIRH-FADKLPI 75 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhC-----CCchHHHHH-hcCCCCE
Confidence 88999999999999999999999999988652 23 258999998885322221 112344443 4678999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCC
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~ 202 (578)
||||+|||+|+.+ .| +++.+. .....|+..+.....++++++++ ...++++|++.+.....
T Consensus 76 LGIC~G~Qlla~~-------~G-----G~v~~~------~~~~~G~~~~~~~~~~~lf~~l~~~~~v~~~Hs~~v~~~~l 137 (191)
T PRK06774 76 LGVCLGHQALGQA-------FG-----ARVVRA------RQVMHGKTSAICHSGQGVFRGLNQPLTVTRYHSLVIAADSL 137 (191)
T ss_pred EEECHHHHHHHHH-------hC-----CEEEeC------CcceecceEEEEecCchhhcCCCCCcEEEEeCcceeeccCC
Confidence 9999999999994 23 676551 22456887777766777888877 68999999998853221
Q ss_pred CCC-cEEEEeecCC--ceEEEEEeC--CEEEEeeCCcc-cCcchHHHHHHHhh
Q 045794 203 NKE-WVSSTCNYGD--NFIASVRRG--NVHAVQFHPEK-SGDVGLSVLRRFLH 249 (578)
Q Consensus 203 ~~~-~~~~~~~~~d--~~iegi~~~--~i~gvQFHPE~-~~~~~~~l~~~Fl~ 249 (578)
+.. .+.+++..+. +.+++++++ |+||+|||||+ ...++..||++|++
T Consensus 138 p~~~~vlA~s~~d~~~~~i~~~~~~~~~i~GvQfHPE~~~~~~G~~i~~nf~~ 190 (191)
T PRK06774 138 PGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQFHPESILSEQGHQLLDNFLK 190 (191)
T ss_pred CCCeEEEEEeCCCCCcceEEEEEeCCCCEEEEEECCCcCCCccHHHHHHHHhh
Confidence 122 2333333221 345677755 99999999999 44588999999986
No 48
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.91 E-value=4.7e-23 Score=198.76 Aligned_cols=174 Identities=22% Similarity=0.271 Sum_probs=123.7
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc----CC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE----DI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~----dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
|+++|+.+++.+++.++|+++|+++.++++.+ ++ .++|+|||+||+....+.. ...+.++. .+.++|+
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~-----~~~~~~~~-~~~~~Pi 75 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAG-----ISLDVIRH-YAGRLPI 75 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCC-----ccHHHHHH-hcCCCCE
Confidence 88999999999999999999999999887653 22 3689999988753222211 12344444 4678999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceee-eEEEEEccCCcccccCC-CeEEEEEeeeeeecCC
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG-WNALQITKDSEILDDVG-DHHVYFVHSYRAMPSD 201 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G-~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~ 201 (578)
||||+|||+||.+ .| +++.+. ..++.| ..++..+ .++++.+++ .+.++++|++.+....
T Consensus 76 LGIClG~Q~la~a-------~G-----g~v~~~------~~~~~g~~~~v~~~-~~~l~~~~~~~~~v~~~H~~~v~~~~ 136 (187)
T PRK08007 76 LGVCLGHQAMAQA-------FG-----GKVVRA------AKVMHGKTSPITHN-GEGVFRGLANPLTVTRYHSLVVEPDS 136 (187)
T ss_pred EEECHHHHHHHHH-------cC-----CEEEeC------CCcccCCceEEEEC-CCCcccCCCCCcEEEEcchhEEccCC
Confidence 9999999999995 24 666552 122334 3445433 445777776 5889999999885333
Q ss_pred CCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcc-cCcchHHHHHHHhh
Q 045794 202 DNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEK-SGDVGLSVLRRFLH 249 (578)
Q Consensus 202 ~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~-~~~~~~~l~~~Fl~ 249 (578)
.+.. +.......++.++++++ .++||+|||||. ....+..+|++|++
T Consensus 137 lp~~-~~v~a~~~~~~i~a~~~~~~~i~GvQfHPE~~~t~~G~~il~nFl~ 186 (187)
T PRK08007 137 LPAC-FEVTAWSETREIMGIRHRQWDLEGVQFHPESILSEQGHQLLANFLH 186 (187)
T ss_pred CCCC-eEEEEEeCCCcEEEEEeCCCCEEEEEeCCcccCCcchHHHHHHHhh
Confidence 2222 33444445678999984 589999999998 44588999999986
No 49
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.91 E-value=5.1e-23 Score=198.99 Aligned_cols=177 Identities=24% Similarity=0.269 Sum_probs=123.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc----CC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE----DI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~----dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
|.|+|+++++.+++.++|+++|+++.+++... ++ .++||||++||+-...+.. ...+++++ +..++|+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~-----~~~~~l~~-~~~~~Pv 75 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAG-----ISLELIRE-FAGKVPI 75 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcc-----hHHHHHHH-hcCCCCE
Confidence 89999999999999999999999999887642 12 2489999987752222211 12345544 4578999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeE-EEEEccCCcccccCC-CeEEEEEeeeeeecCC
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWN-ALQITKDSEILDDVG-DHHVYFVHSYRAMPSD 201 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~-~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~ 201 (578)
||||+|||+|+.+ .| +++.+. ..++.|+. .+. ...++++.+++ ...++++|++.+....
T Consensus 76 LGIClG~Qlla~a-------lG-----g~v~~~------~~~~~g~~~~v~-~~~~~l~~~~~~~~~v~~~H~~~v~~~~ 136 (189)
T PRK05670 76 LGVCLGHQAIGEA-------FG-----GKVVRA------KEIMHGKTSPIE-HDGSGIFAGLPNPFTVTRYHSLVVDRES 136 (189)
T ss_pred EEECHHHHHHHHH-------hC-----CEEEec------CCcccCceeEEE-eCCCchhccCCCCcEEEcchhheecccc
Confidence 9999999999995 23 555541 11234443 333 45667777776 6789999999985311
Q ss_pred CCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCccc-CcchHHHHHHHhhhcc
Q 045794 202 DNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKS-GDVGLSVLRRFLHPKT 252 (578)
Q Consensus 202 ~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~-~~~~~~l~~~Fl~~~~ 252 (578)
.+.. +.......++.+++++. .++||+|||||.. +.++..||++|++.++
T Consensus 137 lp~~-~~~la~s~~~~i~a~~~~~~~~~gvQfHPE~~~~~~g~~i~~~F~~~~~ 189 (189)
T PRK05670 137 LPDC-LEVTAWTDDGEIMGVRHKELPIYGVQFHPESILTEHGHKLLENFLELAR 189 (189)
T ss_pred CCCc-eEEEEEeCCCcEEEEEECCCCEEEEeeCCCcCCCcchHHHHHHHHHhhC
Confidence 1122 22222234568999985 4899999999996 3478999999998754
No 50
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.91 E-value=6.5e-23 Score=225.71 Aligned_cols=261 Identities=21% Similarity=0.259 Sum_probs=169.3
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCc---cCCCC--CCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP---EDILN--ANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~---~dl~~--~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
.+|+|+|||+++...+.++++++|+..++++.. +++.+ +||||||||+....+... ....+...+.++|
T Consensus 4 ~~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~~~~~~l~~~~~dgIIlsGGp~sv~~~~~------p~~~~~i~~~~~P 77 (511)
T PRK00074 4 DKILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEEGA------PRADPEIFELGVP 77 (511)
T ss_pred CEEEEEECCCCcHHHHHHHHHHCCCeEEEEECCCCHHHHhccCCCEEEECCCCcccccCCC------ccccHHHHhCCCC
Confidence 459999999999999999999999988877543 34544 499999998653322111 1122344567999
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCC
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSD 201 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~ 201 (578)
|||||+|||+|+.++ | +++.+ ...+++|+..+.++.++++|++++ ...++.+|++.+...+
T Consensus 78 vLGIC~G~QlLa~~l-------G-----G~V~~------~~~~e~G~~~i~i~~~~~Lf~~l~~~~~v~~~H~d~V~~lp 139 (511)
T PRK00074 78 VLGICYGMQLMAHQL-------G-----GKVER------AGKREYGRAELEVDNDSPLFKGLPEEQDVWMSHGDKVTELP 139 (511)
T ss_pred EEEECHHHHHHHHHh-------C-----CeEEe------cCCcccceEEEEEcCCChhhhcCCCceEEEEECCeEEEecC
Confidence 999999999999952 2 56655 223678999999888888998887 6789999999987655
Q ss_pred CCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc-chHHHHHHHh-hhccCCCCCCCcccccccceeEEEeeeEe
Q 045794 202 DNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD-VGLSVLRRFL-HPKTNIPKKPTEGKALKLAKRVIACLDVR 277 (578)
Q Consensus 202 ~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~-~~~~l~~~Fl-~~~~~~~~~~~~~~~~~~~~riIp~iDl~ 277 (578)
.. ..+.+. ..+..++++++ +++||+|||||++.. .+..||++|+ +.+.+.+.+.+..-....-.+|-- .++
T Consensus 140 ~g-~~vlA~--s~~~~v~ai~~~~~~i~GvQFHPE~~~t~~G~~il~nFl~~i~~~~~~~~~~~~~~~~~~~l~~--~v~ 214 (511)
T PRK00074 140 EG-FKVIAS--TENCPIAAIANEERKFYGVQFHPEVTHTPQGKKLLENFVFDICGCKGDWTMENFIEEAIEEIRE--QVG 214 (511)
T ss_pred CC-cEEEEE--eCCCCEEEEEeCCCCEEEEeCCCCcCCchhHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHH--hcC
Confidence 42 222333 23466889874 689999999999754 7899999999 566666666544222111111111 123
Q ss_pred ecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcccc
Q 045794 278 ANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVP 356 (578)
Q Consensus 278 ~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~p 356 (578)
+++++ ++.|.. ++.+-++-.....| .+++.+=+|.- ........++.+.+++..++|
T Consensus 215 ---~~~vlva~SGGv---------------DS~vll~ll~~~lg-~~v~av~vd~g---~~~~~e~~~~~~~~a~~lgi~ 272 (511)
T PRK00074 215 ---DKKVILGLSGGV---------------DSSVAAVLLHKAIG-DQLTCVFVDHG---LLRKNEAEQVMEMFREHFGLN 272 (511)
T ss_pred ---CCcEEEEeCCCc---------------cHHHHHHHHHHHhC-CceEEEEEeCC---CCCHHHHHHHHHHHHHHcCCc
Confidence 35555 667654 23333333223347 45776666531 111112233334466778888
Q ss_pred EEE
Q 045794 357 LTV 359 (578)
Q Consensus 357 i~~ 359 (578)
+.+
T Consensus 273 ~~v 275 (511)
T PRK00074 273 LIH 275 (511)
T ss_pred EEE
Confidence 764
No 51
>CHL00101 trpG anthranilate synthase component 2
Probab=99.91 E-value=4.3e-23 Score=199.62 Aligned_cols=176 Identities=20% Similarity=0.270 Sum_probs=124.9
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc----CC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE----DI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~----dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
|.|+|+++++.+++.++|+++|+++.+++... ++ ..+|||||+||+....+. .....+.++.+.++|+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~------~~~~~i~~~~~~~~Pi 75 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDS------GISLDVISSYAPYIPI 75 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHC------cchHHHHHHhcCCCcE
Confidence 89999999999999999999999998887542 23 469999998885332221 2223344556789999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCC
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~ 202 (578)
||||+|||+|+.+ .| +++.+. ..+..|+........++++.+++ .+.++++|++.+.....
T Consensus 76 LGIClG~Qlla~~-------~G-----g~V~~~------~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~~H~~~v~~~~l 137 (190)
T CHL00101 76 LGVCLGHQSIGYL-------FG-----GKIIKA------PKPMHGKTSKIYHNHDDLFQGLPNPFTATRYHSLIIDPLNL 137 (190)
T ss_pred EEEchhHHHHHHH-------hC-----CEEEEC------CCcccCceeeEeeCCcHhhccCCCceEEEcchhheeecccC
Confidence 9999999999994 23 676652 12234444333445567887777 67899999999853221
Q ss_pred CCCcEEEEeecCCceEEEEEe--CC-EEEEeeCCccc-CcchHHHHHHHhhh
Q 045794 203 NKEWVSSTCNYGDNFIASVRR--GN-VHAVQFHPEKS-GDVGLSVLRRFLHP 250 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~~--~~-i~gvQFHPE~~-~~~~~~l~~~Fl~~ 250 (578)
+.. +.......++.++++++ .+ +||+|||||.. ...+..|+++|++.
T Consensus 138 p~~-~~vla~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~~l~~nf~~~ 188 (190)
T CHL00101 138 PSP-LEITAWTEDGLIMACRHKKYKMLRGIQFHPESLLTTHGQQILRNFLSL 188 (190)
T ss_pred CCc-eEEEEEcCCCcEEEEEeCCCCCEEEEEeCCccCCChhHHHHHHHHHhh
Confidence 122 22333345677899984 36 99999999996 34788999999874
No 52
>PLN02335 anthranilate synthase
Probab=99.90 E-value=8.3e-23 Score=201.98 Aligned_cols=189 Identities=16% Similarity=0.232 Sum_probs=130.4
Q ss_pred CCCCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc-C---C--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHH
Q 045794 44 TSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE-D---I--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYI 117 (578)
Q Consensus 44 ~~~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~-d---l--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~ 117 (578)
....++|+|+|+++++.+++.++|+++|+++.+++... + + .++|+|||+||+....+... ..+.++ ..
T Consensus 15 ~~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~-----~~~~~~-~~ 88 (222)
T PLN02335 15 SKQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGI-----SLQTVL-EL 88 (222)
T ss_pred cCccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccc-----hHHHHH-Hh
Confidence 34556799999999999999999999999999887642 1 2 35899999887532322111 122333 24
Q ss_pred hCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEcc--CCcccccCC-CeEEEEEee
Q 045794 118 EKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK--DSEILDDVG-DHHVYFVHS 194 (578)
Q Consensus 118 ~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~--~~~l~~~l~-~~~~~~~H~ 194 (578)
..++|+||||+|||+|+.+ .| +++.+.. ....+.++.++..+. .+++|.+++ .+.++++|+
T Consensus 89 ~~~~PiLGIClG~QlLa~a-------lG-----g~v~~~~----~~~~~G~~~~v~~~~~~~~~Lf~~l~~~~~v~~~H~ 152 (222)
T PLN02335 89 GPLVPLFGVCMGLQCIGEA-------FG-----GKIVRSP----FGVMHGKSSPVHYDEKGEEGLFSGLPNPFTAGRYHS 152 (222)
T ss_pred CCCCCEEEecHHHHHHHHH-------hC-----CEEEeCC----CccccCceeeeEECCCCCChhhhCCCCCCEEEechh
Confidence 5679999999999999995 23 4554411 111233455565543 347888887 688999999
Q ss_pred eeeecCCCCCCcEEEEeecCCceEEEEEeC--C-EEEEeeCCcccC-cchHHHHHHHhhhccCC
Q 045794 195 YRAMPSDDNKEWVSSTCNYGDNFIASVRRG--N-VHAVQFHPEKSG-DVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 195 ~~v~~~~~~~~~~~~~~~~~d~~iegi~~~--~-i~gvQFHPE~~~-~~~~~l~~~Fl~~~~~~ 254 (578)
+.+.........+.......++.++++++. + +||+|||||... .++..||++|++.+...
T Consensus 153 ~~v~~~~lp~~~~~v~a~~~~~~v~ai~~~~~~~i~GvQfHPE~~~~~~g~~i~~nF~~~~~~~ 216 (222)
T PLN02335 153 LVIEKDTFPSDELEVTAWTEDGLIMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIIEKK 216 (222)
T ss_pred heEecccCCCCceEEEEEcCCCCEEEEEecCCCCEEEEEeCCCCCCChhHHHHHHHHHHHHHhh
Confidence 988643222221333444456789999954 4 999999999863 47899999999887654
No 53
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.90 E-value=1.4e-22 Score=195.15 Aligned_cols=174 Identities=23% Similarity=0.329 Sum_probs=124.6
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc------CCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE------DILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~------dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
|.|+|+++.+.+++.++|+++|+++.+++... ++.++||||++||+....+.. ....+++++..++|+
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~------~~~~i~~~~~~~~Pv 74 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAG------ISLEIIRALAGKVPI 74 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccch------hHHHHHHHHhcCCCE
Confidence 57899999999999999999999999887652 257899999977643221111 234455556778999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCC
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~ 202 (578)
||||+|||+|+.+ .| +++.+.. ...+.+++.+..+ .++++..++ .+.++++|++++...+.
T Consensus 75 lGIC~G~Qlla~~-------~G-----g~v~~~~-----~~~~g~~~~v~~~-~~~~~~~~~~~~~~~~~H~~~v~~~~~ 136 (184)
T cd01743 75 LGVCLGHQAIAEA-------FG-----GKVVRAP-----EPMHGKTSEIHHD-GSGLFKGLPQPFTVGRYHSLVVDPDPL 136 (184)
T ss_pred EEECHhHHHHHHH-------hC-----CEEEeCC-----CCCcCceeEEEEC-CCccccCCCCCcEEEeCcEEEEecCCC
Confidence 9999999999995 23 5665421 1122334555554 456777776 68899999999876554
Q ss_pred CCCcEEEEeecCCceEEEEEeC--CEEEEeeCCccc-CcchHHHHHHHh
Q 045794 203 NKEWVSSTCNYGDNFIASVRRG--NVHAVQFHPEKS-GDVGLSVLRRFL 248 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~~~--~i~gvQFHPE~~-~~~~~~l~~~Fl 248 (578)
.. .........+..+++++.+ ++||+|||||+. ...+..||++|+
T Consensus 137 ~~-~~~~la~~~~~~v~a~~~~~~~i~gvQfHPE~~~~~~g~~l~~~f~ 184 (184)
T cd01743 137 PD-LLEVTASTEDGVIMALRHRDLPIYGVQFHPESILTEYGLRLLENFL 184 (184)
T ss_pred Cc-eEEEEEeCCCCeEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHhhC
Confidence 32 1233344456789999954 699999999984 357899999995
No 54
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.90 E-value=1.1e-22 Score=197.28 Aligned_cols=178 Identities=20% Similarity=0.207 Sum_probs=124.2
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC------CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED------ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d------l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
|+|+|+.+++.+++.++|+++|+++.+++..+. ..++|+|||+||+....+. ......++. .+.++|+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~-----~~~~~~i~~-~~~~~Pv 75 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEA-----GISMEVIRY-FAGKIPI 75 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhC-----CCchHHHHH-hcCCCCE
Confidence 899999999999999999999999998876531 2468999998885332221 112344443 3578999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCC
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~ 202 (578)
||||+|||+|+.+ .| +++.+. ..++.|+.........++|.+++ .+.++++|++.+.....
T Consensus 76 LGIClG~Qlla~~-------lG-----g~V~~~------~~~~~G~~~~i~~~~~~lf~~~~~~~~v~~~H~~~v~~~~l 137 (195)
T PRK07649 76 FGVCLGHQSIAQV-------FG-----GEVVRA------ERLMHGKTSLMHHDGKTIFSDIPNPFTATRYHSLIVKKETL 137 (195)
T ss_pred EEEcHHHHHHHHH-------cC-----CEEeeC------CCcccCCeEEEEECCChhhcCCCCCCEEEEechheEecccC
Confidence 9999999999995 23 666552 12334443322234567888887 68999999998743221
Q ss_pred CCCcEEEEeecCCceEEEEEeC--CEEEEeeCCcccC-cchHHHHHHHhhhcc
Q 045794 203 NKEWVSSTCNYGDNFIASVRRG--NVHAVQFHPEKSG-DVGLSVLRRFLHPKT 252 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~~~--~i~gvQFHPE~~~-~~~~~l~~~Fl~~~~ 252 (578)
+.. +.......++.+++++++ ++||+|||||... ..+..++++|++...
T Consensus 138 p~~-~~~~a~s~~~~v~a~~~~~~~i~gvQFHPE~~~t~~g~~il~nfl~~~~ 189 (195)
T PRK07649 138 PDC-LEVTSWTEEGEIMAIRHKTLPIEGVQFHPESIMTSHGKELLQNFIRKYS 189 (195)
T ss_pred CCC-eEEEEEcCCCcEEEEEECCCCEEEEEECCCCCCCccHHHHHHHHHHHhH
Confidence 122 233333445678999854 6999999999753 478899999998664
No 55
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.89 E-value=4.1e-22 Score=194.94 Aligned_cols=179 Identities=22% Similarity=0.313 Sum_probs=119.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc---CC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE---DI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 49 ~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~---dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
+|+++|+++++++++.++|+++|+.++++++.. ++ .++|+|||+||+....+... ..+.++.+. .++||
T Consensus 3 ~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~~~l~~~~~~~iIlsgGPg~~~d~~~-----~~~li~~~~-~~~Pi 76 (208)
T PRK05637 3 HVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPRDAGN-----MMALIDRTL-GQIPL 76 (208)
T ss_pred EEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCHHHHHhcCCCEEEEeCCCCCHHHhhH-----HHHHHHHHh-CCCCE
Confidence 599999999999999999999999999988743 33 36899999776433322211 124454433 57999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceee-eEEEEEcc---CCcccccCC-------------C
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG-WNALQITK---DSEILDDVG-------------D 186 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G-~~~i~~~~---~~~l~~~l~-------------~ 186 (578)
||||+|||+|+.++ | +++.+. . +..| +..+.++. .++++.+++ .
T Consensus 77 LGIClG~Qlla~al-------G-----G~V~~~------~-~~~G~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~ 137 (208)
T PRK05637 77 LGICLGFQALLEHH-------G-----GKVEPC------G-PVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRK 137 (208)
T ss_pred EEEcHHHHHHHHHc-------C-----CeeccC------C-cccceEEEeEECCCCCCCcccCCCCcccccccccccCCc
Confidence 99999999999952 3 444321 1 1222 22333332 334555442 3
Q ss_pred eEEEEEeeeeeecCCCCCCcEEEEeecCC-ceEEEEE--eCCEEEEeeCCcccCc-chHHHHHHHhhhccC
Q 045794 187 HHVYFVHSYRAMPSDDNKEWVSSTCNYGD-NFIASVR--RGNVHAVQFHPEKSGD-VGLSVLRRFLHPKTN 253 (578)
Q Consensus 187 ~~~~~~H~~~v~~~~~~~~~~~~~~~~~d-~~iegi~--~~~i~gvQFHPE~~~~-~~~~l~~~Fl~~~~~ 253 (578)
+.++.+|++.+...+.. ..+.+++..++ +++++++ .+++||+|||||...+ .+..||+||+...-+
T Consensus 138 ~~V~~~H~~~v~~lp~~-~~vlA~s~~~~~~v~~a~~~~~~~~~GvQfHPE~~~T~~G~~il~nfl~~~~~ 207 (208)
T PRK05637 138 VPIARYHSLGCVVAPDG-MESLGTCSSEIGPVIMAAETTDGKAIGLQFHPESVLSPTGPIILSRCVEQLLA 207 (208)
T ss_pred eEEEEechhhhhcCCCC-eEEEEEecCCCCCEEEEEEECCCCEEEEEeCCccCcCCCHHHHHHHHHHHHhc
Confidence 67889999887665542 22333332222 4667766 5699999999999654 899999999987543
No 56
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.89 E-value=6.2e-22 Score=194.76 Aligned_cols=185 Identities=20% Similarity=0.248 Sum_probs=130.8
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC--------CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhC
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED--------ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEK 119 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d--------l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~ 119 (578)
++|.|+|.++....++.++|+++|+++.+++...+ +.++|||||+||+....+. ....++++++.+.
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~-----~~~~~~i~~~~~~ 75 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERA-----GASIDMVRACAAA 75 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhc-----chHHHHHHHHHhC
Confidence 46899999888999999999999999888765421 3579999999885322211 1235788888888
Q ss_pred CCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeee-EEEEEccCCcccccCC-CeEEEEEeeeee
Q 045794 120 DRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW-NALQITKDSEILDDVG-DHHVYFVHSYRA 197 (578)
Q Consensus 120 g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~-~~i~~~~~~~l~~~l~-~~~~~~~H~~~v 197 (578)
++||||||+|||+|+.+ .| +++.+. ..+..|. +.+.++. ..++.+++ .+.++++|++.+
T Consensus 76 ~~PiLGIC~G~Qlla~a-------~G-----G~v~~~------~~~~~g~~~~v~~~~-~~~~~~~~~~~~v~~~H~~~v 136 (214)
T PRK07765 76 GTPLLGVCLGHQAIGVA-------FG-----ATVDRA------PELLHGKTSSVHHTG-VGVLAGLPDPFTATRYHSLTI 136 (214)
T ss_pred CCCEEEEccCHHHHHHH-------hC-----CEEeeC------CCCccCceeEEEECC-CccccCCCCccEEEecchheE
Confidence 99999999999999995 23 566541 1223344 3344443 34566655 578999999988
Q ss_pred ecCCCCCCcEEEEeecCCceEEEEEeC--CEEEEeeCCccc-CcchHHHHHHHhhhccCCCCC
Q 045794 198 MPSDDNKEWVSSTCNYGDNFIASVRRG--NVHAVQFHPEKS-GDVGLSVLRRFLHPKTNIPKK 257 (578)
Q Consensus 198 ~~~~~~~~~~~~~~~~~d~~iegi~~~--~i~gvQFHPE~~-~~~~~~l~~~Fl~~~~~~~~~ 257 (578)
.+...+.. +.......++.+++++.+ ++||+|||||.. ...+..++++|+..+.+.+.+
T Consensus 137 ~~~~lp~~-~~vla~s~~~~vqa~~~~~~~i~gvQfHPE~~~t~~g~~~l~~f~~~~~~~~~~ 198 (214)
T PRK07765 137 LPETLPAE-LEVTARTDSGVIMAVRHRELPIHGVQFHPESVLTEGGHRMLANWLTVCGWAPDE 198 (214)
T ss_pred ecccCCCc-eEEEEEcCCCcEEEEEeCCCCEEEEeeCCCcccCcchHHHHHHHHHHhccccch
Confidence 63222222 233333456778999954 799999999975 446889999999988766554
No 57
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.89 E-value=7.7e-22 Score=190.49 Aligned_cols=174 Identities=22% Similarity=0.211 Sum_probs=122.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCc----cCCC--CCCEEEECCCC-CchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP----EDIL--NANRLIFPGVG-AFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~----~dl~--~~DGlILpGGg-~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
|.|+|+.+++.+++.++|+++|+++.+++.. +++. ++|||||+||+ ++.... ...+.++++ ..++|
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~~------~~~~~i~~~-~~~~P 74 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAG------ISLEAIRHF-AGKLP 74 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhcc------hhHHHHHHh-ccCCC
Confidence 8899999999999999999999999887743 2232 48999998875 432211 124566666 67899
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCC
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSD 201 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~ 201 (578)
|||||+|||+|+.+ .| +++.+. .+..+.++..+..+. +.++.+++ .+.++++|++.+....
T Consensus 75 vLGIC~G~Qll~~~-------~G-----G~v~~~-----~~~~~g~~~~v~~~~-~~~~~~l~~~~~v~~~H~~~v~~~~ 136 (188)
T TIGR00566 75 ILGVCLGHQAMGQA-------FG-----GDVVRA-----NTVMHGKTSEIEHNG-AGIFRGLFNPLTATRYHSLVVEPET 136 (188)
T ss_pred EEEECHHHHHHHHH-------cC-----CEEeeC-----CCccccceEEEEECC-CccccCCCCCcEEEEcccceEeccc
Confidence 99999999999994 23 666552 122344467776544 44566655 5788999999885322
Q ss_pred CCCCcEEEEeecCC-ceEEEEEeC--CEEEEeeCCccc-CcchHHHHHHHhh
Q 045794 202 DNKEWVSSTCNYGD-NFIASVRRG--NVHAVQFHPEKS-GDVGLSVLRRFLH 249 (578)
Q Consensus 202 ~~~~~~~~~~~~~d-~~iegi~~~--~i~gvQFHPE~~-~~~~~~l~~~Fl~ 249 (578)
.+.. +.......+ +.+++++++ ++||+|||||.. ...+..||++|+.
T Consensus 137 l~~~-~~v~a~s~~~~~v~a~~~~~~~i~gvQfHPE~~~t~~G~~il~nfl~ 187 (188)
T TIGR00566 137 LPTC-FPVTAWEEENIEIMAIRHRDLPLEGVQFHPESILSEQGHQLLANFLH 187 (188)
T ss_pred CCCc-eEEEEEcCCCCEEEEEEeCCCCEEEEEeCCCccCCcccHHHHHHHHh
Confidence 2222 233332222 488999853 899999999984 4588999999986
No 58
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.89 E-value=4.3e-22 Score=225.01 Aligned_cols=186 Identities=22% Similarity=0.318 Sum_probs=140.4
Q ss_pred CCCCCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCc--cC---CCCCCEEEECCC-CCchHHHHHHHhhcHHHHHHHH
Q 045794 43 ATSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP--ED---ILNANRLIFPGV-GAFAAAMDVLNKTGMAEALCAY 116 (578)
Q Consensus 43 ~~~~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~--~d---l~~~DGlILpGG-g~~~~~~~~l~~~~l~~~i~~~ 116 (578)
.++..++|+|+|+++++.+++.++|+++|+++.+++.. ++ ..++|+|||+|| +++. + ..+.+.++++
T Consensus 512 ~~~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~~~~~~~~~~DgLILsgGPGsp~-d------~~~~~~I~~~ 584 (717)
T TIGR01815 512 RGGEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPA-D------FDVAGTIDAA 584 (717)
T ss_pred CCCCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCChhhhhhcCCCEEEEcCCCCCch-h------cccHHHHHHH
Confidence 44667889999999999999999999999999888654 22 256999999665 4432 1 1345678888
Q ss_pred HhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceee-eEEEEEccCCcccccCC-CeEEEEEee
Q 045794 117 IEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG-WNALQITKDSEILDDVG-DHHVYFVHS 194 (578)
Q Consensus 117 ~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G-~~~i~~~~~~~l~~~l~-~~~~~~~H~ 194 (578)
++.++|+||||+|||+|+.+ .| +++.+ .+.+++| ++++.++..+++|.+++ .+.++++|+
T Consensus 585 ~~~~iPvLGICLG~QlLa~a-------~G-----G~V~~------~~~p~~G~~~~V~~~~~~~Lf~~lp~~~~v~~~HS 646 (717)
T TIGR01815 585 LARGLPVFGVCLGLQGMVEA-------FG-----GALDV------LPEPVHGKASRIRVLGPDALFAGLPERLTVGRYHS 646 (717)
T ss_pred HHCCCCEEEECHHHHHHhhh-------hC-----CEEEE------CCCCeeCcceEEEECCCChhhhcCCCCCEEEEECC
Confidence 88999999999999999994 23 67665 2346777 56787777778898887 789999999
Q ss_pred eeeecCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCccc----CcchHHHHHHHhhhccCC
Q 045794 195 YRAMPSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKS----GDVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 195 ~~v~~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~----~~~~~~l~~~Fl~~~~~~ 254 (578)
+.+.....+.. +......+++.++++++ .++||+|||||.. ...+..|++||++.+...
T Consensus 647 ~~~~~~~LP~~-~~vlA~s~d~~v~Ai~~~~~~i~GVQFHPEsi~T~sg~~G~~ilkNfl~~~~~~ 711 (717)
T TIGR01815 647 LFARRDRLPAE-LTVTAESADGLIMAIEHRRLPLAAVQFHPESIMTLDGGAGLAMIGNVVDRLAAG 711 (717)
T ss_pred CCcccccCCCC-eEEEEEeCCCcEEEEEECCCCEEEEEeCCeeCCccCchhHHHHHHHHHHHHhhc
Confidence 87643222222 23333445678999995 5899999999983 336899999999988644
No 59
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.89 E-value=9.3e-23 Score=197.17 Aligned_cols=179 Identities=26% Similarity=0.389 Sum_probs=135.0
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCC-CeEEEeCCccC-----CCCCCEEEECCCCCchHHHH-HHHhhcHHHHHHHHHhCC
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLG-FGIKDVQTPED-----ILNANRLIFPGVGAFAAAMD-VLNKTGMAEALCAYIEKD 120 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~G-v~v~~v~~~~d-----l~~~DGlILpGGg~~~~~~~-~l~~~~l~~~i~~~~~~g 120 (578)
.+|+|+|++..+...+.|++++.| +-.+++++..+ ..++||+||+||..+..+.. |.. ...+.|+++...+
T Consensus 2 ~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~--~~~~~i~~~~~p~ 79 (198)
T COG0518 2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLP--REKDLIKDAGVPG 79 (198)
T ss_pred cEEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCCCCcccccccCCCEEEEcCCCCCCccccccch--hHHHHHHHhCCCC
Confidence 359999999999999999999999 66666554422 24569999999974443322 333 4567788877778
Q ss_pred CCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEcc-CCcccccCC-Ce-EEEEEeeeee
Q 045794 121 RPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK-DSEILDDVG-DH-HVYFVHSYRA 197 (578)
Q Consensus 121 ~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~-~~~l~~~l~-~~-~~~~~H~~~v 197 (578)
+||||||+|||+||.+ +| ++|.+ ....++||.+++++. .++++++++ .. .++++|.+.+
T Consensus 80 ~pvLGIC~G~Ql~A~~---------lG---g~V~~------~~~~E~G~~~v~~~~~~~~l~~gl~~~~~~v~~sH~D~v 141 (198)
T COG0518 80 KPVLGICLGHQLLAKA---------LG---GKVER------GPKREIGWTPVELTEGDDPLFAGLPDLFTTVFMSHGDTV 141 (198)
T ss_pred CCEEEEChhHHHHHHH---------hC---CEEec------cCCCccceEEEEEecCccccccCCccccCccccchhCcc
Confidence 8899999999999995 23 78765 223789999999984 447888877 44 4999999998
Q ss_pred ecCCCCCCcEEEEeecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 198 MPSDDNKEWVSSTCNYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 198 ~~~~~~~~~~~~~~~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
...|.....+..+..+ -++++++ +++||+|||||++...+..++++|..
T Consensus 142 ~~lP~g~~vlA~s~~c---p~qa~~~~~~~~gvQFHpEv~~~~~~~~l~nf~~ 191 (198)
T COG0518 142 VELPEGAVVLASSETC---PNQAFRYGKRAYGVQFHPEVTHEYGEALLENFAH 191 (198)
T ss_pred ccCCCCCEEEecCCCC---hhhheecCCcEEEEeeeeEEeHHHHHHHHHHhhh
Confidence 8777644433333333 3577875 49999999999998888999999995
No 60
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.89 E-value=1.3e-21 Score=205.33 Aligned_cols=188 Identities=19% Similarity=0.259 Sum_probs=124.1
Q ss_pred ecCCCcccccC--CCCCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc---CC--CCCCEEEECCCCCchHHHHHHH
Q 045794 33 FKSPRALSIRA--TSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE---DI--LNANRLIFPGVGAFAAAMDVLN 105 (578)
Q Consensus 33 ~~~~~~~~~~~--~~~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~---dl--~~~DGlILpGGg~~~~~~~~l~ 105 (578)
+++..++.... .+.+.+|+|+|+| .+++++++|+++|+++.++++.. ++ .++|||||+||+...... .
T Consensus 161 vs~~~~~~~~~~~~~~~~~I~viD~G--~k~nivr~L~~~G~~v~vvp~~~~~~~i~~~~~DGIvLSgGPgdp~~~---~ 235 (360)
T PRK12564 161 VSTKEPYPWPGPGGELKYKVVAIDFG--VKRNILRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPGDPAAL---D 235 (360)
T ss_pred eCCCCCEECCCCCCCCCCEEEEEeCC--cHHHHHHHHHHCCCEEEEEeCCCCHHHHHhcCCCEEEEeCCCCChHHH---H
Confidence 44444444421 2336789999976 89999999999999999988653 23 269999999885322211 1
Q ss_pred hhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeee-EEEEEccCCcccccC
Q 045794 106 KTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW-NALQITKDSEILDDV 184 (578)
Q Consensus 106 ~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~-~~i~~~~~~~l~~~l 184 (578)
...+.++++++.++|+||||+|||+|+.+ .| +++.+.. ..+.|. +++......
T Consensus 236 --~~~~~i~~~~~~~~PilGIClG~QlLa~a-------~G-----g~v~kl~------~gh~G~~~pv~~~~~~------ 289 (360)
T PRK12564 236 --YAIEMIRELLEKKIPIFGICLGHQLLALA-------LG-----AKTYKMK------FGHRGANHPVKDLETG------ 289 (360)
T ss_pred --HHHHHHHHHHHcCCeEEEECHHHHHHHHH-------hC-----CcEeccC------CCccCCceeeEECCCC------
Confidence 34567888888899999999999999995 24 3333311 112221 233222111
Q ss_pred CCeEEEEEeeeeeecCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc--chHHHHHHHhhhc
Q 045794 185 GDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD--VGLSVLRRFLHPK 251 (578)
Q Consensus 185 ~~~~~~~~H~~~v~~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~--~~~~l~~~Fl~~~ 251 (578)
......++|++.+.+...+..+.....+.+++.+|++++ .|+||+|||||..++ ++..+|++|++.+
T Consensus 290 ~~~its~~H~~~V~~~~lp~~l~v~a~~~~Dg~iegi~~~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~~ 360 (360)
T PRK12564 290 KVEITSQNHGFAVDEDSLPANLEVTHVNLNDGTVEGLRHKDLPAFSVQYHPEASPGPHDSAYLFDEFVELM 360 (360)
T ss_pred cEEEEecCcccEEcccccCCceEEEEEeCCCCcEEEEEECCCCEEEEEeCCcCCCCCCCHHHHHHHHHHhC
Confidence 123457789998863333233433333445788999995 489999999999653 6788999999764
No 61
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.88 E-value=1.4e-21 Score=189.59 Aligned_cols=176 Identities=23% Similarity=0.275 Sum_probs=120.9
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc-C-----CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE-D-----ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~-d-----l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
|+++|..+++.+++.++|+++|+++.+++..+ + -.++|+||++||+-...+.. ...++++. ++.++|+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~-----~~~~~i~~-~~~~~Pi 75 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAG-----ISLQAIEH-FAGKLPI 75 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCc-----chHHHHHH-hcCCCCE
Confidence 89999999999999999999999999887552 2 12589999988752222111 12345544 5688999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeE-EEEEccCCcccccCC-CeEEEEEeeeeeecCC
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWN-ALQITKDSEILDDVG-DHHVYFVHSYRAMPSD 201 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~-~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~ 201 (578)
||||+|||+|+.+ .| +++.+. ..++.|+. .+.. ..++++.+++ .+.++++|++.+....
T Consensus 76 LGIClG~Qlia~a-------~G-----g~v~~~------~~~~~G~~~~~~~-~~~~l~~~~~~~~~v~~~H~~~v~~~~ 136 (193)
T PRK08857 76 LGVCLGHQAIAQV-------FG-----GQVVRA------RQVMHGKTSPIRH-TGRSVFKGLNNPLTVTRYHSLVVKNDT 136 (193)
T ss_pred EEEcHHHHHHHHH-------hC-----CEEEeC------CCceeCceEEEEE-CCCcccccCCCccEEEEccEEEEEcCC
Confidence 9999999999995 23 566541 22345653 3333 3456777776 6889999999875322
Q ss_pred CCCC-cEEEEeecCC---ceEEEEEeC--CEEEEeeCCccc-CcchHHHHHHHhhh
Q 045794 202 DNKE-WVSSTCNYGD---NFIASVRRG--NVHAVQFHPEKS-GDVGLSVLRRFLHP 250 (578)
Q Consensus 202 ~~~~-~~~~~~~~~d---~~iegi~~~--~i~gvQFHPE~~-~~~~~~l~~~Fl~~ 250 (578)
.+.. .+.++....+ ..+++++++ |+||+|||||.. ...+..||++|++.
T Consensus 137 lp~~~~v~a~s~~~~~~~~~i~~~~~~~~pi~gvQfHPE~~~t~~g~~i~~nFl~~ 192 (193)
T PRK08857 137 LPECFELTAWTELEDGSMDEIMGFQHKTLPIEAVQFHPESIKTEQGHQLLANFLAR 192 (193)
T ss_pred CCCCeEEEEEecCcCCCcceEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHHHHhh
Confidence 2222 2233332112 467888754 999999999986 34789999999874
No 62
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.88 E-value=5.9e-22 Score=191.74 Aligned_cols=174 Identities=26% Similarity=0.397 Sum_probs=126.0
Q ss_pred EEEECCCCCHHHHHHHHHHCCCeEEEeCCcc-------CCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 51 TLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE-------DILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 51 ~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~-------dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
+|+|+++++..++.++++++|+++++++... ++.++|||||+||.....+ +. .+.+.++++.+.++|+
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d---~~--~~~~~i~~~~~~~~Pi 75 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD---IE--GLIELIREARERKIPI 75 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS---HH--HHHHHHHHHHHTTSEE
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc---cc--ccccccccccccceEE
Confidence 5899999999999999999999888876542 2678999999998544433 22 4567788888899999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEc-cCCcccccCC-CeEEEEEeeeeeec--
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQIT-KDSEILDDVG-DHHVYFVHSYRAMP-- 199 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~-~~~~l~~~l~-~~~~~~~H~~~v~~-- 199 (578)
||||+|||+|+.++ | +++.+. ...++.|+...... ..++++.+.+ .+.++++|++.+..
T Consensus 76 lGIC~G~Q~la~~~-------G-----~~v~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~v~~~~ 138 (192)
T PF00117_consen 76 LGICLGHQILAHAL-------G-----GKVVPS-----PEKPHHGGNIPISETPEDPLFYGLPESFKAYQYHSDAVNPDD 138 (192)
T ss_dssp EEETHHHHHHHHHT-------T-----HEEEEE-----ESEEEEEEEEEEEEEEEHGGGTTSTSEEEEEEEECEEEEEGH
T ss_pred EEEeehhhhhHHhc-------C-----Cccccc-----ccccccccccccccccccccccccccccccccccceeeeccc
Confidence 99999999999952 3 455441 12355665544333 2347777776 78999999999886
Q ss_pred -CCCCCCcEEEEeecCCc-eEEEEEe--CCEEEEeeCCcccCc-chHHHHHHHhh
Q 045794 200 -SDDNKEWVSSTCNYGDN-FIASVRR--GNVHAVQFHPEKSGD-VGLSVLRRFLH 249 (578)
Q Consensus 200 -~~~~~~~~~~~~~~~d~-~iegi~~--~~i~gvQFHPE~~~~-~~~~l~~~Fl~ 249 (578)
.+.. +.......++ .+++++. +++||+|||||++.. .+..++++|+-
T Consensus 139 ~~p~~---~~~la~s~~~~~~~~~~~~~~~i~g~QfHPE~~~~~~~~~~l~nf~~ 190 (192)
T PF00117_consen 139 LLPEG---FEVLASSSDGCPIQAIRHKDNPIYGVQFHPEFSSSPGGPQLLKNFFL 190 (192)
T ss_dssp HHHTT---EEEEEEETTTTEEEEEEECTTSEEEESSBTTSTTSTTHHHHHHHHHH
T ss_pred ccccc---cccccccccccccccccccccEEEEEecCCcCCCCCCcchhhhheeE
Confidence 4432 2233333233 5677764 359999999999876 45899999974
No 63
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.88 E-value=1.3e-21 Score=204.86 Aligned_cols=188 Identities=20% Similarity=0.280 Sum_probs=122.3
Q ss_pred ecCCCcccccC--CCCCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC---CC--CCCEEEECCCCCchHHHHHHH
Q 045794 33 FKSPRALSIRA--TSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED---IL--NANRLIFPGVGAFAAAMDVLN 105 (578)
Q Consensus 33 ~~~~~~~~~~~--~~~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d---l~--~~DGlILpGGg~~~~~~~~l~ 105 (578)
+++..++.... .+.+++|+++|+| .+++++++|+++|+++.++++..+ +. .+|||||+||+..... ..
T Consensus 157 vs~~~~~~~~~~~~~~~~~i~viD~G--~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~pDGIiLSgGPgdp~~---~~ 231 (358)
T TIGR01368 157 VSTKEPYTWGQKRGGKKKRVVVIDFG--VKQNILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPGDPAA---VE 231 (358)
T ss_pred eccCCCEEeCCCCCCCccEEEEEeCC--cHHHHHHHHHHCCCEEEEEcCCCCHHHHHhhCCCEEEECCCCCCHHH---HH
Confidence 44444444432 2233689999975 889999999999999999876533 32 4699999998532211 11
Q ss_pred hhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceee-eEEEEEccCCcccccC
Q 045794 106 KTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG-WNALQITKDSEILDDV 184 (578)
Q Consensus 106 ~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G-~~~i~~~~~~~l~~~l 184 (578)
...+.++++++ ++|+||||+|||+|+.+ .| +++.+.. ..+.| .+++.......+
T Consensus 232 --~~i~~i~~~~~-~~PILGIClG~QlLa~a-------~G-----g~v~kl~------~gh~G~nhpV~~~~~~~v---- 286 (358)
T TIGR01368 232 --PAIETIRKLLE-KIPIFGICLGHQLLALA-------FG-----AKTYKMK------FGHRGGNHPVKDLITGRV---- 286 (358)
T ss_pred --HHHHHHHHHHc-CCCEEEECHHHHHHHHH-------hC-----CceeccC------cCcCCCceeeEECCCCcE----
Confidence 23567777776 89999999999999995 34 3332211 11222 123322211111
Q ss_pred CCeEEEEEeeeeeecCCCC-CCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc--chHHHHHHHhhhcc
Q 045794 185 GDHHVYFVHSYRAMPSDDN-KEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD--VGLSVLRRFLHPKT 252 (578)
Q Consensus 185 ~~~~~~~~H~~~v~~~~~~-~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~--~~~~l~~~Fl~~~~ 252 (578)
....++|++.+...... ..+.....+.+|+.+|++++ .|+||+|||||..+. +...||++|++.+.
T Consensus 287 --~itsqnH~~aV~~~~l~~~~l~vta~~~nDg~Vegi~h~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~~~ 357 (358)
T TIGR01368 287 --EITSQNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKDLPVFSVQYHPEASPGPHDTEYLFDEFIDLIK 357 (358)
T ss_pred --EEeecCCCcEEcccccCCCceEEEEEECCCCcEEEEEECCCCEEEEEECCCCCCCCCChHHHHHHHHHHhh
Confidence 23457899988643322 23433334446788999995 589999999999754 67889999998764
No 64
>PRK13566 anthranilate synthase; Provisional
Probab=99.88 E-value=3.2e-21 Score=218.26 Aligned_cols=186 Identities=24% Similarity=0.348 Sum_probs=139.7
Q ss_pred cCCCCCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC-----CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHH
Q 045794 42 RATSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED-----ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAY 116 (578)
Q Consensus 42 ~~~~~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d-----l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~ 116 (578)
..++..++|+|+|+++++.+++.++|++.|+++.+++...+ ..++|+|||+||+....+ ..+..+++.+
T Consensus 521 ~~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGpgsp~d------~~~~~lI~~a 594 (720)
T PRK13566 521 AAVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSD------FDCKATIDAA 594 (720)
T ss_pred CCCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCCCChhh------CCcHHHHHHH
Confidence 34567788999999999999999999999999998876532 357899999666422211 2356788888
Q ss_pred HhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCccee-eeEEEEEccCCcccccCC-CeEEEEEee
Q 045794 117 IEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQI-GWNALQITKDSEILDDVG-DHHVYFVHS 194 (578)
Q Consensus 117 ~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~-G~~~i~~~~~~~l~~~l~-~~~~~~~H~ 194 (578)
++.++||||||+|||+|+.+ .| +++.+. ..++. +++++.++..+++|++++ .+.++++|+
T Consensus 595 ~~~~iPILGIClG~QlLa~a-------lG-----G~V~~~------~~~~~G~~~~V~v~~~~~Lf~~lp~~~~v~~~Hs 656 (720)
T PRK13566 595 LARNLPIFGVCLGLQAIVEA-------FG-----GELGQL------AYPMHGKPSRIRVRGPGRLFSGLPEEFTVGRYHS 656 (720)
T ss_pred HHCCCcEEEEehhHHHHHHH-------cC-----CEEEEC------CCCccCCceEEEECCCCchhhcCCCCCEEEEecc
Confidence 88999999999999999995 23 566542 22333 356788888788888887 789999999
Q ss_pred eeeecCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCccc----CcchHHHHHHHhhhcc
Q 045794 195 YRAMPSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKS----GDVGLSVLRRFLHPKT 252 (578)
Q Consensus 195 ~~v~~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~----~~~~~~l~~~Fl~~~~ 252 (578)
+++.....+.. +......+++.++++++ .|+||+|||||+. ...+..||+||++.+.
T Consensus 657 ~~v~~~~Lp~~-~~vlA~s~dg~V~ai~~~~~pi~GVQFHPE~i~t~~~~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 657 LFADPETLPDE-LLVTAETEDGVIMAIEHKTLPVAAVQFHPESIMTLGGDVGLRIIENVVRLLA 719 (720)
T ss_pred eeEeeccCCCc-eEEEEEeCCCcEEEEEECCCCEEEEeccCeeCCcCCchhHHHHHHHHHHHhh
Confidence 87754222222 33444446678999996 4899999999983 2468999999998764
No 65
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.87 E-value=3.8e-21 Score=184.91 Aligned_cols=181 Identities=29% Similarity=0.460 Sum_probs=131.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEech
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLG 129 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG 129 (578)
|+|+.+ .+...+..++|++.|+++.+++..+++.++|+||+|||+....+ .......+.+.|+++++.++|+||||+|
T Consensus 1 igvl~~-qg~~~e~~~~l~~~g~~v~~v~~~~~l~~~dgiii~Gg~~~~~~-~~~~~~~~~~~i~~~~~~g~PvlGiC~G 78 (183)
T cd01749 1 IGVLAL-QGDFREHIRALERLGVEVIEVRTPEDLEGIDGLIIPGGESTTIG-KLLRRTGLLDPLREFIRAGKPVFGTCAG 78 (183)
T ss_pred CEEEEe-cCCcHHHHHHHHHCCCeEEEECCHHHhccCCEEEECCchHHHHH-HHHHhCCHHHHHHHHHHcCCeEEEECHH
Confidence 345555 35555666999999999999999888999999999998743322 2333446788899999999999999999
Q ss_pred HHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccC--CCeEEEEEeeeeeecCCCCCCcE
Q 045794 130 LQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDV--GDHHVYFVHSYRAMPSDDNKEWV 207 (578)
Q Consensus 130 ~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l--~~~~~~~~H~~~v~~~~~~~~~~ 207 (578)
+|+|+.++...+...|+|+++.++.+.. ..+..|+....++ +... ..+.++.+|...+...++....
T Consensus 79 ~qlL~~~~~~~~~~~glG~~~~~v~~~~-----~g~~~g~~~~~l~-----~~~~~~~~~~~~~~h~~~v~~~p~~~~~- 147 (183)
T cd01749 79 LILLAKEVEDQGGQPLLGLLDITVRRNA-----FGRQVDSFEADLD-----IPGLGLGPFPAVFIRAPVIEEVGPGVEV- 147 (183)
T ss_pred HHHHHHHhcccCCCCccCceeEEEEeec-----cccccceEEEcCC-----CCcCCCCccEEEEEECcEEEEcCCCcEE-
Confidence 9999998765456789999999987621 2234454444332 1122 2578889999888766553332
Q ss_pred EEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHh
Q 045794 208 SSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFL 248 (578)
Q Consensus 208 ~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl 248 (578)
.++. +..+++++.+++||+|||||++.. .+++++|+
T Consensus 148 la~~---~~~~~a~~~~~~~g~qfHPE~~~~--~~~~~~f~ 183 (183)
T cd01749 148 LAEY---DGKIVAVRQGNVLATSFHPELTDD--TRIHEYFL 183 (183)
T ss_pred EEec---CCEEEEEEECCEEEEEcCCccCCC--cchhhhhC
Confidence 2332 345568888899999999999864 37888885
No 66
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.87 E-value=6.3e-21 Score=199.47 Aligned_cols=188 Identities=19% Similarity=0.248 Sum_probs=123.8
Q ss_pred ecCCCcccccCCCCCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC---C--CCCCEEEECCCCCchHHHHHHHhh
Q 045794 33 FKSPRALSIRATSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED---I--LNANRLIFPGVGAFAAAMDVLNKT 107 (578)
Q Consensus 33 ~~~~~~~~~~~~~~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d---l--~~~DGlILpGGg~~~~~~~~l~~~ 107 (578)
++++.++... ..+++|+++|+| .+.+++++|+++|+++.++++..+ + .++|||||+||+....+..
T Consensus 155 vs~~~~~~~~--~~~~~V~viD~G--~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~DGIiLsgGPgdp~~~~----- 225 (354)
T PRK12838 155 VSTKEPYTYG--NGGKHVALIDFG--YKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVLSNGPGDPKELQ----- 225 (354)
T ss_pred EEcCCCEEeC--CCCCEEEEECCC--HHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEEcCCCCChHHhH-----
Confidence 3344444432 235789999975 899999999999999999876532 3 3699999998863222211
Q ss_pred cHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCe
Q 045794 108 GMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDH 187 (578)
Q Consensus 108 ~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~ 187 (578)
...+.++++++. +|+||||+|||+|+.+ .| +++.+... ..+-+.+++........ +
T Consensus 226 ~~~~~i~~~~~~-~PvlGIClG~QlLa~a-------~G-----g~v~kl~~-----gh~G~~hpV~~~~~~~~------~ 281 (354)
T PRK12838 226 PYLPEIKKLISS-YPILGICLGHQLIALA-------LG-----ADTEKLPF-----GHRGANHPVIDLTTGRV------W 281 (354)
T ss_pred HHHHHHHHHhcC-CCEEEECHHHHHHHHH-------hC-----CEEecCCC-----CccCCceEEEECCCCeE------E
Confidence 234567777766 9999999999999995 24 45443211 01123345543322222 2
Q ss_pred EEEEEeeeeeecCCCCCC-cEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc--chHHHHHHHhhhccC
Q 045794 188 HVYFVHSYRAMPSDDNKE-WVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD--VGLSVLRRFLHPKTN 253 (578)
Q Consensus 188 ~~~~~H~~~v~~~~~~~~-~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~--~~~~l~~~Fl~~~~~ 253 (578)
.+.++|++.+........ +.....+.+++.+|++++ .|+||+|||||+... ++..||++|++.++.
T Consensus 282 ~ts~~H~~aV~~~sl~~~~l~v~a~~~~Dg~Veai~~~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~~~~ 352 (354)
T PRK12838 282 MTSQNHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKPVLSVQFHPEAHPGPHDAEYIFDEFLEMMEK 352 (354)
T ss_pred EeccchheEecccccCCCCcEEEEEECCCCeEEEEEECCCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHh
Confidence 345688888864322222 333333456789999995 489999999998653 678999999998753
No 67
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.87 E-value=2.6e-21 Score=211.96 Aligned_cols=180 Identities=18% Similarity=0.212 Sum_probs=137.5
Q ss_pred CCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCC--CCCCEEEECCC-CCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 46 SDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDI--LNANRLIFPGV-GAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 46 ~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl--~~~DGlILpGG-g~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
...+|+.+| ||.+.|++|+|..+|+++.++++..++ .+||||++++| |++.-.. .+.+.+++.++.++|
T Consensus 171 k~~~I~aiD--cG~K~N~IRcL~~RGa~vtVvPw~~~i~~~~yDGlflSNGPGdPe~~~------~~v~~vr~lL~~~~P 242 (1435)
T KOG0370|consen 171 KSLRILAID--CGLKYNQIRCLVKRGAEVTVVPWDYPIAKEEYDGLFLSNGPGDPELCP------LLVQNVRELLESNVP 242 (1435)
T ss_pred cccEEEEcc--cCchHHHHHHHHHhCceEEEecCCccccccccceEEEeCCCCCchhhH------HHHHHHHHHHhCCCC
Confidence 345566666 679999999999999999999998775 47999999887 4432221 123456666667799
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCC
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~ 202 (578)
|||||+|||+||.+ .|..+++++ |+++ +++.|+..... .. -+-..++|+|.++....
T Consensus 243 vfGIClGHQllA~A-------aGakT~KmK---yGNR-GhNiP~~~~~t----Gr--------c~ITSQNHGYAVD~~tL 299 (1435)
T KOG0370|consen 243 VFGICLGHQLLALA-------AGAKTYKMK---YGNR-GHNIPCTCRAT----GR--------CFITSQNHGYAVDPATL 299 (1435)
T ss_pred eEEEehhhHHHHHh-------hCCceEEee---cccc-CCCccceeccC----ce--------EEEEecCCceeeccccc
Confidence 99999999999995 576666655 7776 66666653110 00 12335899999988666
Q ss_pred CCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc--chHHHHHHHhhhccCCCC
Q 045794 203 NKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD--VGLSVLRRFLHPKTNIPK 256 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~--~~~~l~~~Fl~~~~~~~~ 256 (578)
+..|-..+.+.+|+..+++.+ +|++++|||||.+++ ++..+|+.|++.+.....
T Consensus 300 p~gWk~lFvN~NDgSNEGI~Hss~P~fSvQFHPEat~GP~DTeyLFDiFi~lvkk~ks 357 (1435)
T KOG0370|consen 300 PAGWKPLFVNANDGSNEGIMHSSKPFFSVQFHPEATPGPHDTEYLFDVFIELVKKSKS 357 (1435)
T ss_pred cCCCchheeecccCCCceEecCCCCceeeecCCcCCCCCcchHHHHHHHHHHHHHHhc
Confidence 678888899999999999985 599999999999765 889999999999887744
No 68
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.86 E-value=1.2e-20 Score=198.63 Aligned_cols=175 Identities=15% Similarity=0.234 Sum_probs=115.9
Q ss_pred CCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC---C--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCC
Q 045794 46 SDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED---I--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKD 120 (578)
Q Consensus 46 ~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d---l--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g 120 (578)
.+++|+|+|++ .++++.++|+++|+++.++++..+ + .++|||||+||+....... .+.+.++++++.+
T Consensus 191 ~~~~I~viD~g--~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~dgIilSgGPg~p~~~~-----~~i~~i~~~~~~~ 263 (382)
T CHL00197 191 YQLKIIVIDFG--VKYNILRRLKSFGCSITVVPATSPYQDILSYQPDGILLSNGPGDPSAIH-----YGIKTVKKLLKYN 263 (382)
T ss_pred CCCEEEEEECC--cHHHHHHHHHHCCCeEEEEcCCCCHHHHhccCCCEEEEcCCCCChhHHH-----HHHHHHHHHHhCC
Confidence 36789999974 999999999999999999976532 2 3689999988843222211 2345566666678
Q ss_pred CCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceee-eEEEEEccCCcccccCCCe-EEEEEeeeeee
Q 045794 121 RPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG-WNALQITKDSEILDDVGDH-HVYFVHSYRAM 198 (578)
Q Consensus 121 ~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G-~~~i~~~~~~~l~~~l~~~-~~~~~H~~~v~ 198 (578)
+|+||||+|||+|+.+ .| +++.+.. ..+.| .+++..+ ..+ ...++|++.+.
T Consensus 264 ~PilGIClGhQlLa~a-------~G-----g~v~k~~------~Gh~g~n~pv~~~---------~~v~itsq~H~~~v~ 316 (382)
T CHL00197 264 IPIFGICMGHQILSLA-------LE-----AKTFKLK------FGHRGLNHPSGLN---------QQVEITSQNHGFAVN 316 (382)
T ss_pred CCEEEEcHHHHHHHHH-------hC-----CEEeccC------CCCCCCCEecCCC---------CceEEeecchheEee
Confidence 9999999999999995 23 4443311 11112 1221100 012 22467888775
Q ss_pred cCCCCC-CcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc--chHHHHHHHhhhccCC
Q 045794 199 PSDDNK-EWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD--VGLSVLRRFLHPKTNI 254 (578)
Q Consensus 199 ~~~~~~-~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~--~~~~l~~~Fl~~~~~~ 254 (578)
...... ++.....+.+++.+|++++ .|+||+|||||+.+. +...+|++|++.++..
T Consensus 317 ~~sv~~~~~~vt~~~~nDgtvegi~h~~~pi~gVQFHPE~~~gp~d~~~lf~~Fv~~~~~~ 377 (382)
T CHL00197 317 LESLAKNKFYITHFNLNDGTVAGISHSPKPYFSVQYHPEASPGPHDADYLFEYFIEIIKHS 377 (382)
T ss_pred ccccCCCCcEEEEEECCCCCEEEEEECCCCcEEEeeCCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 332221 2333333445788999995 489999999999653 5667999999988764
No 69
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.86 E-value=1.4e-20 Score=188.00 Aligned_cols=176 Identities=21% Similarity=0.298 Sum_probs=126.4
Q ss_pred cEEEEE-ECCCCCHHHHHHHHHHCCCeEEEeCC------ccCCCCCCEEEECCCCCc-hHHHHHHHhhcHHHHHHHHHhC
Q 045794 48 SVVTLL-DYGAGNVRSVRNAIRHLGFGIKDVQT------PEDILNANRLIFPGVGAF-AAAMDVLNKTGMAEALCAYIEK 119 (578)
Q Consensus 48 ~~I~vl-d~~~g~~~~i~~~L~~~Gv~v~~v~~------~~dl~~~DGlILpGGg~~-~~~~~~l~~~~l~~~i~~~~~~ 119 (578)
++|.|+ ++++++...+.++|+++|.++.+++. ++++.++||+||+||... .+...|+. .+.++|+++++.
T Consensus 8 ~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l~~~dgvii~Ggp~~~~d~~~wi~--~~~~~i~~~~~~ 85 (239)
T PRK06490 8 RPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTLEDHAGAVIFGGPMSANDPDDFIR--REIDWISVPLKE 85 (239)
T ss_pred ceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcccccCEEEEECCCCCCCCCchHHH--HHHHHHHHHHHC
Confidence 445555 78888999999999999998887753 235778999999998532 22334555 467889999999
Q ss_pred CCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeec
Q 045794 120 DRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMP 199 (578)
Q Consensus 120 g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~ 199 (578)
++|+||||+|||+|+.+ +| +++.+.. ...+++|++++.++...+.+..++ ..++++|++. ..
T Consensus 86 ~~PvLGIC~G~Qlla~a---------lG---G~V~~~~----~G~~e~G~~~i~~~~~~~~~~~~~-~~~~~~H~d~-~~ 147 (239)
T PRK06490 86 NKPFLGICLGAQMLARH---------LG---ARVAPHP----DGRVEIGYYPLRPTEAGRALMHWP-EMVYHWHREG-FD 147 (239)
T ss_pred CCCEEEECHhHHHHHHH---------cC---CEeecCC----CCCCccceEEeEECCCcccccCCC-CEEEEECCcc-cc
Confidence 99999999999999995 23 6765521 112478999999887666554443 4688899987 33
Q ss_pred CCCCCCcEEEEeecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHHHHhhh
Q 045794 200 SDDNKEWVSSTCNYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLRRFLHP 250 (578)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~~Fl~~ 250 (578)
.|... .++++ ..+..+++++. +++||+|||||++. .++++|+..
T Consensus 148 lP~~~-~~LA~--s~~~~~qa~~~~~~v~g~QfHPE~~~----~~~~~~i~~ 192 (239)
T PRK06490 148 LPAGA-ELLAT--GDDFPNQAFRYGDNAWGLQFHPEVTR----AMMHRWVVR 192 (239)
T ss_pred CCCCC-EEEEe--CCCCCeEEEEeCCCEEEEeeCccCCH----HHHHHHHHh
Confidence 44432 22333 23345788885 48999999999964 678888764
No 70
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.85 E-value=6.4e-20 Score=176.26 Aligned_cols=183 Identities=28% Similarity=0.385 Sum_probs=128.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHH-HhhcHHHHHHHHHhCCCCEEEEe
Q 045794 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVL-NKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 49 ~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l-~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
+|+|+.+ .|+..+..++|+++|+++++++.+++++++|+||||||.... +..+ ...++.+.|+++++.++|++|||
T Consensus 1 ~igvl~~-qg~~~e~~~~l~~~g~~~~~v~~~~~l~~~d~liipGG~~~~--~~~l~~~~~l~~~i~~~~~~g~pilGIC 77 (184)
T TIGR03800 1 KIGVLAL-QGAVREHARALEALGVEGVEVKRPEQLDEIDGLIIPGGESTT--LSRLLDKYGMFEPLRNFILSGLPVFGTC 77 (184)
T ss_pred CEEEEEc-cCCHHHHHHHHHHCCCEEEEECChHHhccCCEEEECCCCHHH--HHHHHHhccHHHHHHHHHHcCCcEEEEC
Confidence 3788888 589999999999999999999999899999999999985322 2222 33467888999999999999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcE
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWV 207 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~ 207 (578)
+|||+|+.++.... ...+|++++++.+... ....+.....++.... .. .+......|...+...+.. +
T Consensus 78 ~G~qlL~~~~~~~~-~~~lg~~~~~v~~~~~-----g~~~~s~~~~l~~~~~-~~--~~~~~~~~h~~~v~~lp~~---~ 145 (184)
T TIGR03800 78 AGLIMLAKEIIGQK-EGYLGLLDMTVERNAY-----GRQVDSFEAEVDIKGV-GD--DPITGVFIRAPKIVSVGNG---V 145 (184)
T ss_pred HHHHHHHhhhccCC-CCccCcEEEEEEeecc-----CCccccEEEEeecccC-CC--CcceEEEEcCCCcccCCCC---e
Confidence 99999999863211 1248888999877321 1234444443332111 00 0234456777766655432 3
Q ss_pred EEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 208 SSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 208 ~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
......+ +.+++++.+++||+|||||.+... ++++.|++
T Consensus 146 ~vla~~~-~~~~a~~~~~~~gvQfHPE~~~~~--~~~~~f~~ 184 (184)
T TIGR03800 146 EILAKVG-NRIVAVRQGNILVSSFHPELTDDH--RVHEYFLE 184 (184)
T ss_pred EEEEEeC-CeeEEEEeCCEEEEEeCCccCCCc--hHHHHhhC
Confidence 3333333 456788888999999999997544 89999974
No 71
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.85 E-value=5.2e-20 Score=176.26 Aligned_cols=168 Identities=21% Similarity=0.294 Sum_probs=110.2
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC-----CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED-----ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFL 124 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d-----l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIl 124 (578)
|+|+|+|+. +++.++++++|+++.+++...+ ..++|||||+||....... ....+.++++.+.++|+|
T Consensus 1 i~i~d~g~~--~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~~~~-----~~~~~~~~~~~~~~~Pvl 73 (178)
T cd01744 1 VVVIDFGVK--HNILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPALL-----DEAIKTVRKLLGKKIPIF 73 (178)
T ss_pred CEEEecCcH--HHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCChhHh-----HHHHHHHHHHHhCCCCEE
Confidence 579998855 6899999999999988875432 3579999999985322221 134567888888999999
Q ss_pred EEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceee-eEEEEEccCCcccccCCCeEEEEEeeeeeecCCCC
Q 045794 125 GICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG-WNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDN 203 (578)
Q Consensus 125 GIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G-~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~ 203 (578)
|||+|||+|+.+ .| +++.+.. .++.| .+++....... ...+..+|++.+.....+
T Consensus 74 GIC~G~Q~l~~~-------~G-----g~v~~~~------~~~~g~~~~v~~~~~~~------~~~v~~~H~~~v~~~~lp 129 (178)
T cd01744 74 GICLGHQLLALA-------LG-----AKTYKMK------FGHRGSNHPVKDLITGR------VYITSQNHGYAVDPDSLP 129 (178)
T ss_pred EECHHHHHHHHH-------cC-----CceecCC------CCCCCCceeeEEcCCCC------cEEEEcCceEEEcccccC
Confidence 999999999995 23 3333211 01111 23333322111 234567898887532222
Q ss_pred CCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc--chHHHHHHHh
Q 045794 204 KEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD--VGLSVLRRFL 248 (578)
Q Consensus 204 ~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~--~~~~l~~~Fl 248 (578)
..+.......+++.+|++++ .++||+|||||.... +...||++|+
T Consensus 130 ~~~~v~a~s~~~~~i~a~~~~~~~i~GvQfHPE~~~~~~~~~~lf~~f~ 178 (178)
T cd01744 130 GGLEVTHVNLNDGTVEGIRHKDLPVFSVQFHPEASPGPHDTEYLFDEFL 178 (178)
T ss_pred CceEEEEEECCCCcEEEEEECCCCeEEEeeCCCCCCCCCCchHhHhhhC
Confidence 23333322234567899985 489999999998653 5668999985
No 72
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.84 E-value=5.9e-20 Score=193.71 Aligned_cols=158 Identities=22% Similarity=0.296 Sum_probs=105.7
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC---C--CCCCEEEECCCC-CchHHHHHHHhhcHHHHHHHHHhCCC
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED---I--LNANRLIFPGVG-AFAAAMDVLNKTGMAEALCAYIEKDR 121 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d---l--~~~DGlILpGGg-~~~~~~~~l~~~~l~~~i~~~~~~g~ 121 (578)
++|+++|+| ++++|+++|.++|++++++++..+ + .++|||||+||+ ++. ...+ ..+.+++++ .++
T Consensus 241 ~~IvviD~G--~K~nIlr~L~~~G~~v~VvP~~~~~~ei~~~~pDGIiLSnGPGDP~-~~~~-----~ie~ik~l~-~~i 311 (415)
T PLN02771 241 YHVIAYDFG--IKHNILRRLASYGCKITVVPSTWPASEALKMKPDGVLFSNGPGDPS-AVPY-----AVETVKELL-GKV 311 (415)
T ss_pred CEEEEECCC--hHHHHHHHHHHcCCeEEEECCCCCHHHHhhcCCCEEEEcCCCCChh-HhhH-----HHHHHHHHH-hCC
Confidence 678888865 999999999999999999987532 2 369999999984 332 2222 234455544 479
Q ss_pred CEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceee-eEEEEEccCCcccccCCCeEEEEEeeeeeecC
Q 045794 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG-WNALQITKDSEILDDVGDHHVYFVHSYRAMPS 200 (578)
Q Consensus 122 PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G-~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~ 200 (578)
||||||+|||+|+.+ .| +++.++ +..+.| .+++.......+ ..+.++|++.+.+.
T Consensus 312 PIlGICLGhQlLa~A-------lG-----Gkv~K~------~~Gh~G~n~pV~~~~~~~v------~itsqnHg~aVd~~ 367 (415)
T PLN02771 312 PVFGICMGHQLLGQA-------LG-----GKTFKM------KFGHHGGNHPVRNNRTGRV------EISAQNHNYAVDPA 367 (415)
T ss_pred CEEEEcHHHHHHHHh-------cC-----CeEEEC------CCCcccceEEEEECCCCCE------EEEecCHHHhhccc
Confidence 999999999999995 24 565542 122333 233332211111 24568999988544
Q ss_pred CCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc
Q 045794 201 DDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD 238 (578)
Q Consensus 201 ~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~ 238 (578)
..+..+.....+.+|+.+||+++ .++||+|||||..++
T Consensus 368 sLp~~~~vt~~nlnDgtvegi~~~~~pi~gVQFHPEa~pg 407 (415)
T PLN02771 368 SLPEGVEVTHVNLNDGSCAGLAFPALNVMSLQYHPEASPG 407 (415)
T ss_pred cCCCceEEEEEeCCCCcEEEEEECCCCEEEEEcCCCCCCC
Confidence 33333333334456789999985 489999999999754
No 73
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.84 E-value=9.4e-20 Score=200.70 Aligned_cols=179 Identities=19% Similarity=0.238 Sum_probs=125.1
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCc-------cCC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHh
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP-------EDI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIE 118 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~-------~dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~ 118 (578)
.+|+|+|+++++.+++.+.|+++|+++.+++.. +++ .++|+|||+||+....+.. ....+.+.+.
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~------~~~~i~~~~~ 75 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAG------CMPELLTRLR 75 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhCC------CCHHHHHHHh
Confidence 369999999999999999999999998888653 122 3478999988754333221 1122333345
Q ss_pred CCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeee
Q 045794 119 KDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRA 197 (578)
Q Consensus 119 ~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v 197 (578)
.++||||||+|||+|+.+ .| +++.+ ...+..|+.........++|.+++ .+.++.+|++.+
T Consensus 76 ~~iPILGIClG~QlLa~a-------~G-----G~V~~------~~~~~~G~~~~i~~~~~~lf~~~~~~~~v~~~Hs~~v 137 (531)
T PRK09522 76 GKLPIIGICLGHQAIVEA-------YG-----GYVGQ------AGEILHGKASSIEHDGQAMFAGLTNPLPVARYHSLVG 137 (531)
T ss_pred cCCCEEEEcHHHHHHHHh-------cC-----CEEEe------CCceeeeeEEEEeecCCccccCCCCCcEEEEehheec
Confidence 689999999999999994 23 56554 122334543222233456777776 689999999988
Q ss_pred ecCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccC-cchHHHHHHHhhhccCC
Q 045794 198 MPSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSG-DVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 198 ~~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~-~~~~~l~~~Fl~~~~~~ 254 (578)
...|.. +..... .++.++++++ .++||+|||||+.. .++..|++||++.+.+.
T Consensus 138 ~~lP~~---l~vlA~-sd~~v~ai~~~~~~i~GVQFHPEs~~T~~G~~il~NFl~~~~~~ 193 (531)
T PRK09522 138 SNIPAG---LTINAH-FNGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQQK 193 (531)
T ss_pred ccCCCC---cEEEEe-cCCCEEEEEECCCCEEEEEecCccccCcchHHHHHHHHHHHhhc
Confidence 655432 222222 3577899985 68999999999854 48999999999998764
No 74
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.83 E-value=9.6e-20 Score=181.50 Aligned_cols=172 Identities=22% Similarity=0.270 Sum_probs=121.8
Q ss_pred EEEEEEC-CCCCHHHHHHHHHHCCCeEEEeCCc------cCCCCCCEEEECCCCCchHH---HHHHHhhcHHHHHHHHHh
Q 045794 49 VVTLLDY-GAGNVRSVRNAIRHLGFGIKDVQTP------EDILNANRLIFPGVGAFAAA---MDVLNKTGMAEALCAYIE 118 (578)
Q Consensus 49 ~I~vld~-~~g~~~~i~~~L~~~Gv~v~~v~~~------~dl~~~DGlILpGGg~~~~~---~~~l~~~~l~~~i~~~~~ 118 (578)
+|.|+.. ...+...+.++|+++|.++.+++.. .++.++|+|||+||.....+ ..|+. .+.++|+++++
T Consensus 4 ~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~--~~~~~i~~~~~ 81 (234)
T PRK07053 4 TAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLA--PEIALLRQRLA 81 (234)
T ss_pred eEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHH--HHHHHHHHHHH
Confidence 4666643 3557778999999999998887642 23567999999998532222 23554 56788999999
Q ss_pred CCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccC---CcccccCC-CeEEEEEee
Q 045794 119 KDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKD---SEILDDVG-DHHVYFVHS 194 (578)
Q Consensus 119 ~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~---~~l~~~l~-~~~~~~~H~ 194 (578)
.++|+||||+|||+|+.+ .| +++.+ ...+++||.++.+++. +++. +++ .+.++++|+
T Consensus 82 ~~~PvlGIC~G~Qlla~a-------lG-----g~V~~------~~~~e~G~~~i~~t~~g~~~pl~-~~~~~~~~~~~H~ 142 (234)
T PRK07053 82 AGLPTLGICLGAQLIARA-------LG-----ARVYP------GGQKEIGWAPLTLTDAGRASPLR-HLGAGTPVLHWHG 142 (234)
T ss_pred CCCCEEEECccHHHHHHH-------cC-----CcEec------CCCCeEeEEEEEEeccccCChhh-cCCCcceEEEEeC
Confidence 999999999999999995 23 56544 1246899999988753 3443 444 678999999
Q ss_pred eeeecCCCCCCcEEEEeecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 195 YRAMPSDDNKEWVSSTCNYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 195 ~~v~~~~~~~~~~~~~~~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
+.+. .|.... +++++. ...+++++. +++||+|||||++. .+++.|+.
T Consensus 143 d~~~-lP~ga~-~La~s~--~~~~qaf~~g~~~~g~QfHpE~~~----~~~~~w~~ 190 (234)
T PRK07053 143 DTFD-LPEGAT-LLASTP--ACRHQAFAWGNHVLALQFHPEARE----DRFEAWLI 190 (234)
T ss_pred CEEe-cCCCCE-EEEcCC--CCCeeEEEeCCCEEEEeeCccCCH----HHHHHHHH
Confidence 8874 454333 333322 223588885 68999999999965 57777775
No 75
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.83 E-value=8.4e-20 Score=178.07 Aligned_cols=187 Identities=25% Similarity=0.362 Sum_probs=121.4
Q ss_pred EEEEEECC---CCCHHHHHHHHHHCCCeEEE--eCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 49 VVTLLDYG---AGNVRSVRNAIRHLGFGIKD--VQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 49 ~I~vld~~---~g~~~~i~~~L~~~Gv~v~~--v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
+|+|+-+. +.....+.++|+.+|.++.+ +..++++.++|+||||||..... .......++.+.|+++++.++|+
T Consensus 2 ~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~~~l~~~d~iii~GG~~~~~-~~~~~~~~~~~~i~~~~~~~~pi 80 (200)
T PRK13527 2 KIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRPGDLPDCDALIIPGGESTTI-GRLMKREGILDEIKEKIEEGLPI 80 (200)
T ss_pred EEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCChHHhccCCEEEECCCcHHHH-HHHHhhccHHHHHHHHHHCCCeE
Confidence 45665442 23445677889999975544 45556788999999999853322 12223336788999999999999
Q ss_pred EEEechHHHHhhhccc----CCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeee
Q 045794 124 LGICLGLQLLFQSSEE----NGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAM 198 (578)
Q Consensus 124 lGIClG~QlLa~a~~e----~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~ 198 (578)
||||+|+|+|+.++.. +....++|++++++.+.... ...+... ...++.+++ .+.++.+|++.+.
T Consensus 81 lGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g-----~~~~~~~-----~~~~~~~~~~~~~~~~~H~~~v~ 150 (200)
T PRK13527 81 LGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFG-----RQRDSFE-----AEIDLSGLDGPFHAVFIRAPAIT 150 (200)
T ss_pred EEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeecccc-----CccccEE-----EeEeccccCCcceEEEEcccccc
Confidence 9999999999997531 12234577777766542110 0011000 112244444 5788999998876
Q ss_pred cCCCCCCcEEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 199 PSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 199 ~~~~~~~~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
..+... .+.++ ..+. +++++.+++||+|||||++.. ..+|++|++.+.
T Consensus 151 ~lp~~~-~~la~--~~~~-~~a~~~~~~~g~QfHPE~~~~--~~l~~~f~~~~~ 198 (200)
T PRK13527 151 KVGGDV-EVLAK--LDDR-IVAVEQGNVLATAFHPELTDD--TRIHEYFLKKVK 198 (200)
T ss_pred ccCCCe-EEEEE--ECCE-EEEEEECCEEEEEeCCCCCCC--CHHHHHHHHHHh
Confidence 555422 22232 2333 457778899999999999865 589999999874
No 76
>KOG3055 consensus Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=99.83 E-value=1.4e-19 Score=166.98 Aligned_cols=245 Identities=18% Similarity=0.262 Sum_probs=188.2
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeecccc---ccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKE---NEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPML 343 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~---~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~ 343 (578)
.+++||||++ +|+|. .|.|.. |.-... ..........++|+.|.+.|...-|++-|... .+ .
T Consensus 7 t~FrpCIDiH---~G~VKQIVGgTL---~~~d~dV~kTNfvS~kpssyYAklYK~~~l~G~HVImLGPn-----~~---~ 72 (263)
T KOG3055|consen 7 TQFRPCIDIH---KGKVKQIVGGTL---RDLDGDVLKTNFVSDKPSSYYAKLYKEDGLTGGHVIMLGPN-----SQ---A 72 (263)
T ss_pred cceecceeec---cCeeeeeecccc---ccCcCCcccccccccCchHHHHHHHhhcCCCcceEEEECCC-----cH---H
Confidence 5899999999 89977 555543 221111 11112234456899999999999999988531 11 2
Q ss_pred HHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhC
Q 045794 344 QVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY 423 (578)
Q Consensus 344 ~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (578)
..+..+- +..--+|+||||++ +.+..|++.||++||+.|..+++ ..| ..+-++.+.+..
T Consensus 73 AA~~ALh-~~Pg~LQvGGGIN~------------~Nc~~wl~egASkVIVTSwlF~~-g~f-------dL~RLk~i~s~~ 131 (263)
T KOG3055|consen 73 AAIGALH-AYPGGLQVGGGINS------------ENCMSWLEEGASKVIVTSWLFNN-GKF-------DLERLKDIVSIV 131 (263)
T ss_pred HHHHHHH-hCCCceeecCccCh------------HHHHHHHHhcCceEEEEEEeccC-Ccc-------cHHHHHHHHHHh
Confidence 3334443 35567999999999 45999999999999999999984 233 568899999999
Q ss_pred CCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC
Q 045794 424 GNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD 503 (578)
Q Consensus 424 g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d 503 (578)
|++|+++-+.+|+. +| .|.++++-|+.-+++.+-+---++.....+|+++|..+.+
T Consensus 132 GKdRlvvDlSCRkk--------------------Dg----Rw~~a~nkWQ~~td~eLne~~l~~L~~y~~EFLiHaaDVE 187 (263)
T KOG3055|consen 132 GKDRLVVDLSCRKK--------------------DG----RWAIATNKWQKFTDVELNEKSLEFLGGYSDEFLIHAADVE 187 (263)
T ss_pred CcceEEEEeeeecc--------------------CC----eEEEEechhhhhhheeeCHHHHHHHhccchhheeeccccc
Confidence 99999999999873 23 5899999999988877666655566666899999999999
Q ss_pred CCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh--cCchHHhhhhhh--ccCCCCHHHHHHHHHhC
Q 045794 504 GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRK--TNASAALAAGIF--HRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 504 G~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~--~G~~gv~vgsa~--~~~~~~~~~~~~~l~~~ 572 (578)
|...|+|-+++..+-+.+++|+.++||+.+++|+..+.+. ..+| +-+||++ ..|.+.++++.++=.++
T Consensus 188 Glc~GIDE~LV~kLgew~kip~tYAGG~~s~dDl~lvd~lskGkVD-lT~GSaLDIFGG~l~f~dvvaWn~kq 259 (263)
T KOG3055|consen 188 GLCLGIDEELVAKLGEWSKIPVTYAGGVTSMDDLELVDDLSKGKVD-LTVGSALDIFGGNLPFKDVVAWNHKQ 259 (263)
T ss_pred hhhcCccHHHHHHhccceecceEEecCceehhHHHHHHhhcCCcee-EEecchhhhhcCCcchhhhhhccccc
Confidence 9999999999999999999999999999999999887541 2355 4458876 56777888877665554
No 77
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.83 E-value=4.5e-20 Score=178.85 Aligned_cols=188 Identities=21% Similarity=0.237 Sum_probs=130.8
Q ss_pred HHHHHHHHHCCCeEEEeCCccC-------CCCCCEEEECCCCCchHHHH------------HHHhhcHHHHHHHHHhCCC
Q 045794 61 RSVRNAIRHLGFGIKDVQTPED-------ILNANRLIFPGVGAFAAAMD------------VLNKTGMAEALCAYIEKDR 121 (578)
Q Consensus 61 ~~i~~~L~~~Gv~v~~v~~~~d-------l~~~DGlILpGGg~~~~~~~------------~l~~~~l~~~i~~~~~~g~ 121 (578)
..++++...+|.-...++...+ ++..|||||+||.+..+..+ ..++.-.+.+|+.++++++
T Consensus 29 ~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~i 108 (243)
T COG2071 29 YDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGI 108 (243)
T ss_pred HHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCC
Confidence 3567778888877777774322 57799999999954333221 0122235678999999999
Q ss_pred CEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCC
Q 045794 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSD 201 (578)
Q Consensus 122 PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~ 201 (578)
||||||.|+|+|+.++... -+.-+...++. ..++ .....+...|.+.+.+++.+.+.+.+.. +.++|+|.+.+.
T Consensus 109 PILgICRG~QllNVa~GGt-L~q~i~~~~~~---~~H~-~~~~~~~~~H~V~i~~~s~La~i~g~~~-~~VNS~HhQaIk 182 (243)
T COG2071 109 PILGICRGLQLLNVALGGT-LYQDISEQPGH---IDHR-QPNPVHIESHEVHIEPGSKLAKILGESE-FMVNSFHHQAIK 182 (243)
T ss_pred CEEEEccchHHHHHHhcCe-eehhhhccccc---cccc-CCCCcccceeEEEecCCccHHHhcCccc-eeecchHHHHHH
Confidence 9999999999999964100 00000001111 2222 2223455688999888888876665444 778888888887
Q ss_pred CCCCcEEEEeecCCceEEEEEe---CCEEEEeeCCcccCc---chHHHHHHHhhhccCC
Q 045794 202 DNKEWVSSTCNYGDNFIASVRR---GNVHAVQFHPEKSGD---VGLSVLRRFLHPKTNI 254 (578)
Q Consensus 202 ~~~~~~~~~~~~~d~~iegi~~---~~i~gvQFHPE~~~~---~~~~l~~~Fl~~~~~~ 254 (578)
..++.+.+.+...|+.+||++. .+++|||||||+... ....||++|.+.++..
T Consensus 183 ~La~~L~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 183 KLAPGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNACKKH 241 (243)
T ss_pred HhCCCcEEEEECCCCcEEEEEecCCceEEEEecChhhhccCChHHHHHHHHHHHHHHhh
Confidence 7777788888888999999994 489999999999543 4689999999988754
No 78
>PRK05665 amidotransferase; Provisional
Probab=99.83 E-value=3.4e-19 Score=178.00 Aligned_cols=165 Identities=17% Similarity=0.175 Sum_probs=115.1
Q ss_pred CHHH-HHHHHHHCCC--eEEEeCC-----ccCCCCCCEEEECCCCCchH-HHHHHHhhcHHHHHHHHHhCCCCEEEEech
Q 045794 59 NVRS-VRNAIRHLGF--GIKDVQT-----PEDILNANRLIFPGVGAFAA-AMDVLNKTGMAEALCAYIEKDRPFLGICLG 129 (578)
Q Consensus 59 ~~~~-i~~~L~~~Gv--~v~~v~~-----~~dl~~~DGlILpGGg~~~~-~~~~l~~~~l~~~i~~~~~~g~PIlGIClG 129 (578)
.+.. +.+.|...+. ++.+++. +.++.+|||+||+||..... +..|+. .+.++|+++.+.++|+||||+|
T Consensus 23 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~dgiiitGs~~~v~~~~pwi~--~l~~~i~~~~~~~~PilGIC~G 100 (240)
T PRK05665 23 GYGRMFEQLFARQPIAAEFVVYNVVQGDYPADDEKFDAYLVTGSKADSFGTDPWIQ--TLKTYLLKLYERGDKLLGVCFG 100 (240)
T ss_pred CHHHHHHHHHHhCCCCceEEEEeccCCCCCCCcccCCEEEECCCCCCccccchHHH--HHHHHHHHHHhcCCCEEEEeHH
Confidence 3344 5556677774 4444431 33567899999999954332 345665 5788999999999999999999
Q ss_pred HHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCcEE
Q 045794 130 LQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEWVS 208 (578)
Q Consensus 130 ~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~~~ 208 (578)
||+||.+ +| ++|.+. ....+.|+..+.++...+++..++ .+.++++|++.+...|.....+
T Consensus 101 hQlla~A---------lG---G~V~~~-----~~G~e~G~~~~~~~~~~~~~~~~~~~~~~~~~H~D~V~~LP~ga~~L- 162 (240)
T PRK05665 101 HQLLALL---------LG---GKAERA-----SQGWGVGIHRYQLAAHAPWMSPAVTELTLLISHQDQVTALPEGATVI- 162 (240)
T ss_pred HHHHHHH---------hC---CEEEeC-----CCCcccceEEEEecCCCccccCCCCceEEEEEcCCeeeeCCCCcEEE-
Confidence 9999995 23 676551 123467888888887777887766 7899999999987777654333
Q ss_pred EEeecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHH
Q 045794 209 STCNYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLR 245 (578)
Q Consensus 209 ~~~~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~ 245 (578)
+++ ....+++++. +++||+|||||++......+++
T Consensus 163 a~s--~~~~~q~~~~~~~~~g~QfHPE~~~~~~~~~l~ 198 (240)
T PRK05665 163 ASS--DFCPFAAYHIGDQVLCFQGHPEFVHDYSRALLD 198 (240)
T ss_pred EeC--CCCcEEEEEeCCCEEEEecCCcCcHHHHHHHHH
Confidence 332 2334788874 5899999999997643334443
No 79
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.82 E-value=2e-19 Score=179.76 Aligned_cols=162 Identities=22% Similarity=0.256 Sum_probs=113.6
Q ss_pred HHHHHHHHCCCeEEEeCCc-----cCCCCCCEEEECCCCCchH-HHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 62 SVRNAIRHLGFGIKDVQTP-----EDILNANRLIFPGVGAFAA-AMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 62 ~i~~~L~~~Gv~v~~v~~~-----~dl~~~DGlILpGGg~~~~-~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
.+.+.+...|.++.+++.. .++.++|||||+||+.... ...|+. .+.++|+++++.++||||||+|||+|+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~dgvvi~Gg~~~~~d~~~w~~--~~~~~i~~~~~~~~PvlGIC~G~Qlla~ 103 (237)
T PRK09065 26 WIRVALGLAEQPVVVVRVFAGEPLPAPDDFAGVIITGSWAMVTDRLDWSE--RTADWLRQAAAAGMPLLGICYGHQLLAH 103 (237)
T ss_pred HHHHHhccCCceEEEEeccCCCCCCChhhcCEEEEeCCCcccCCCchhHH--HHHHHHHHHHHCCCCEEEEChhHHHHHH
Confidence 3445566678888766443 2457899999999864332 234554 5678899999999999999999999999
Q ss_pred hcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEcc---CCcccccCC-CeEEEEEeeeeeecCCCCCCcEEEEe
Q 045794 136 SSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK---DSEILDDVG-DHHVYFVHSYRAMPSDDNKEWVSSTC 211 (578)
Q Consensus 136 a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~---~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~~~~~~ 211 (578)
+ .| +++.+. ....++|++.+.++. .++++++++ .+.++++|++.+...|... .+.++.
T Consensus 104 a-------lG-----g~V~~~-----~~g~e~G~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~d~v~~lp~~~-~~la~s 165 (237)
T PRK09065 104 A-------LG-----GEVGYN-----PAGRESGTVTVELHPAAADDPLFAGLPAQFPAHLTHLQSVLRLPPGA-VVLARS 165 (237)
T ss_pred H-------cC-----CccccC-----CCCCccceEEEEEccccccChhhhcCCccCcEeeehhhhhhhCCCCC-EEEEcC
Confidence 5 23 555431 123568999998875 346887776 6888999998876555432 222332
Q ss_pred ecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 212 NYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 212 ~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
.+..+++++. +++||+|||||++. .++..|+.
T Consensus 166 --~~~~iqa~~~~~~i~gvQfHPE~~~----~~~~~~~~ 198 (237)
T PRK09065 166 --AQDPHQAFRYGPHAWGVQFHPEFTA----HIMRAYLR 198 (237)
T ss_pred --CCCCeeEEEeCCCEEEEEeCCcCCH----HHHHHHHH
Confidence 2345789985 47999999999965 46666665
No 80
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.81 E-value=9.3e-19 Score=200.12 Aligned_cols=184 Identities=18% Similarity=0.202 Sum_probs=125.3
Q ss_pred cEEEEEECCCCCHHHHHHHHHHC-CCeEEEeCCcc----C-------CCCCCEEEECCC-CCchHHHHHHHhhcHHHHHH
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHL-GFGIKDVQTPE----D-------ILNANRLIFPGV-GAFAAAMDVLNKTGMAEALC 114 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~-Gv~v~~v~~~~----d-------l~~~DGlILpGG-g~~~~~~~~l~~~~l~~~i~ 114 (578)
++|++||+.+++.+||++.|++. |+++.+++.++ + +..+|+|||++| +++... .... ...+.+.
T Consensus 82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~-~d~G--i~~~~i~ 158 (918)
T PLN02889 82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCP-ADIG--ICLRLLL 158 (918)
T ss_pred ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccch-HHHH--HHHHHHH
Confidence 68999999999999999999998 99988887642 1 247899999776 443211 1111 1133444
Q ss_pred HHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCC-----eEE
Q 045794 115 AYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGD-----HHV 189 (578)
Q Consensus 115 ~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~-----~~~ 189 (578)
++ .++||||||+|||+|+.+ .| +++.+ ...+..|...........+|.+++. +.+
T Consensus 159 ~~--~~iPILGICLGhQ~i~~~-------~G-----g~V~~------~~~~~HG~~s~I~h~~~~lF~glp~~~~~~f~v 218 (918)
T PLN02889 159 EC--RDIPILGVCLGHQALGYV-------HG-----ARIVH------APEPVHGRLSEIEHNGCRLFDDIPSGRNSGFKV 218 (918)
T ss_pred Hh--CCCcEEEEcHHHHHHHHh-------cC-----ceEEe------CCCceeeeeeeEeecCchhhcCCCcCCCCCceE
Confidence 32 479999999999999994 34 66655 2334566533222345578888873 799
Q ss_pred EEEeeeeeecCCCCCCc-EEEEeecC---------------------------------------------------Cce
Q 045794 190 YFVHSYRAMPSDDNKEW-VSSTCNYG---------------------------------------------------DNF 217 (578)
Q Consensus 190 ~~~H~~~v~~~~~~~~~-~~~~~~~~---------------------------------------------------d~~ 217 (578)
..+|+..+...+.+..+ ..++.... .+.
T Consensus 219 ~RYHSL~v~~~~lP~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 298 (918)
T PLN02889 219 VRYHSLVIDAESLPKELVPIAWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKI 298 (918)
T ss_pred EeCCCcccccCCCCCceEEEEEECCCcccccccccccccccccccccccccccccccccccccccccccccccccCCCCe
Confidence 99999988532221111 22222110 157
Q ss_pred EEEEEe--CCEEEEeeCCcccC-cchHHHHHHHhhhccCC
Q 045794 218 IASVRR--GNVHAVQFHPEKSG-DVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 218 iegi~~--~~i~gvQFHPE~~~-~~~~~l~~~Fl~~~~~~ 254 (578)
++|+++ .|+||+|||||... ..+..||+||++.++..
T Consensus 299 iMairH~~~P~~GVQfHPESi~t~~G~~l~~nF~~~~~~~ 338 (918)
T PLN02889 299 LMGIMHSTRPHYGLQFHPESIATCYGRQIFKNFREITQDY 338 (918)
T ss_pred eEEEEECCCceEEEEeCCccccCchhHHHHHHHHHHHHHH
Confidence 899996 49999999999843 47899999999988744
No 81
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.81 E-value=8.6e-19 Score=199.95 Aligned_cols=184 Identities=18% Similarity=0.190 Sum_probs=122.6
Q ss_pred CCCcEEEEEECCCCCHHHHHHHHHHC-C--CeEEEeCCcc-------CCCCCCEEEECCC-CCchHHHHHHHhhcHHHHH
Q 045794 45 SSDSVVTLLDYGAGNVRSVRNAIRHL-G--FGIKDVQTPE-------DILNANRLIFPGV-GAFAAAMDVLNKTGMAEAL 113 (578)
Q Consensus 45 ~~~~~I~vld~~~g~~~~i~~~L~~~-G--v~v~~v~~~~-------dl~~~DGlILpGG-g~~~~~~~~l~~~~l~~~i 113 (578)
..+++|++||+++++++|+++.|++. | +++.+++... ++.++|+|||+|| +++.. ... ...+
T Consensus 3 ~~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~-~~~------~~i~ 75 (742)
T TIGR01823 3 QQRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNN-AQD------MGII 75 (742)
T ss_pred CCCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccc-hhh------hHHH
Confidence 35778999999999999999999987 3 5667665431 2467999999766 43321 111 1223
Q ss_pred HHHHh----CCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeee-EEEEEccCCcccccCCCeE
Q 045794 114 CAYIE----KDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW-NALQITKDSEILDDVGDHH 188 (578)
Q Consensus 114 ~~~~~----~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~-~~i~~~~~~~l~~~l~~~~ 188 (578)
+++.+ .++||||||+|||+|+.+ .| +++.++ ..++.|+ +.+.. ....+|.+++.+.
T Consensus 76 ~~i~~~~~~~~iPvLGIClG~QlLa~a-------~G-----G~v~~~------~~~~hG~~~~v~~-~~~~lf~gl~~~~ 136 (742)
T TIGR01823 76 SELWELANLDEVPVLGICLGFQSLCLA-------QG-----ADISRL------PTPKHGQVYEMHT-NDAAIFCGLFSVK 136 (742)
T ss_pred HHHHHhcccCCCcEEEEchhhHHHHhh-------cC-----CEEEEC------CCCCcCeEEEEEE-CCccccCCCCCCc
Confidence 33333 359999999999999994 23 566552 2234554 33433 3456777777788
Q ss_pred EEEEeeeeeecCCCCCCcEEEEeec-CCceEEEEEe--CCEEEEeeCCcccCc--chHHHHHHHhhhccCC
Q 045794 189 VYFVHSYRAMPSDDNKEWVSSTCNY-GDNFIASVRR--GNVHAVQFHPEKSGD--VGLSVLRRFLHPKTNI 254 (578)
Q Consensus 189 ~~~~H~~~v~~~~~~~~~~~~~~~~-~d~~iegi~~--~~i~gvQFHPE~~~~--~~~~l~~~Fl~~~~~~ 254 (578)
++.+|++.+................ +++.++++++ .|+||+|||||.... .+..||++|++.+...
T Consensus 137 v~~~Hs~~v~~~~~~~l~~~~~a~~~~~~~i~ai~h~~~pi~GVQFHPE~~~s~~g~~~Lf~nFl~~~~~~ 207 (742)
T TIGR01823 137 STRYHSLYANPEGIDTLLPLCLTEDEEGIILMSAQTKKKPWFGVQYHPESCCSELGSGKLVSNFLKLAFIN 207 (742)
T ss_pred eeEEEEEEccCCCCCcceEEEEEEcCCCCeEEEEEEcCCceEEEEeCcccCCCCccHHHHHHHHHHHHHHh
Confidence 8999999875432222112223222 2357899884 599999999999543 3489999999987755
No 82
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.81 E-value=1.7e-18 Score=163.51 Aligned_cols=176 Identities=24% Similarity=0.362 Sum_probs=123.4
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
++|+|+.+ .|...+..++|++.|+++..++.++++.++|+||||||. ....+..++..++.+.|+++.+ ++|++|||
T Consensus 3 ~~igVLal-qG~~~Eh~~al~~lG~~v~~v~~~~~l~~~D~LILPGG~-~t~~~~ll~~~~l~~~Ik~~~~-~kpilGIC 79 (179)
T PRK13526 3 QKVGVLAI-QGGYQKHADMFKSLGVEVKLVKFNNDFDSIDRLVIPGGE-STTLLNLLNKHQIFDKLYNFCS-SKPVFGTC 79 (179)
T ss_pred cEEEEEEC-CccHHHHHHHHHHcCCcEEEECCHHHHhCCCEEEECCCh-HHHHHHHhhhcCcHHHHHHHHc-CCcEEEEc
Confidence 56999998 588888999999999999999999999999999999973 3444455555678899999875 78999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcE
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWV 207 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~ 207 (578)
.|+|+|+.. ..+||++++++.++... .... .|. ..+. +.+. ++++.++.--.+... .+.+
T Consensus 80 aG~qlL~~~------s~~Lg~idg~V~Rn~~G--rq~~--sf~-~~~~-----~~~~-~~~~vFiRAP~i~~~---~~~v 139 (179)
T PRK13526 80 AGSIILSKG------EGYLNLLDLEVQRNAYG--RQVD--SFV-ADIS-----FNDK-NITGVFIRAPKFIVV---GNQV 139 (179)
T ss_pred HHHHHHHcc------CCCCCCccEEEEEcCCC--Cccc--eee-eecC-----cCCc-eEEEEEEcCceEeEc---CCCc
Confidence 999999994 36899999999985432 1100 111 0110 0111 233333222222222 2223
Q ss_pred EEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 208 SSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 208 ~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
......+ +.+-+++++|++++-||||.+.+. ++.++|++
T Consensus 140 ~vla~~~-~~~v~v~q~~~l~~~FHPElt~d~--r~h~~f~~ 178 (179)
T PRK13526 140 DILSKYQ-NSPVLLRQANILVSSFHPELTQDP--TVHEYFLA 178 (179)
T ss_pred EEEEEEC-CEEEEEEECCEEEEEeCCccCCCc--hHHHHHhc
Confidence 3333333 456789999999999999998644 89999986
No 83
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.81 E-value=7.2e-19 Score=169.74 Aligned_cols=171 Identities=24% Similarity=0.366 Sum_probs=121.0
Q ss_pred EEEEECCCC-CHHHHHHHHHHCC---CeEEEeCCc-----cCCCCCCEEEECCCCCch--HHHHHHHhhcHHHHHHHHHh
Q 045794 50 VTLLDYGAG-NVRSVRNAIRHLG---FGIKDVQTP-----EDILNANRLIFPGVGAFA--AAMDVLNKTGMAEALCAYIE 118 (578)
Q Consensus 50 I~vld~~~g-~~~~i~~~L~~~G---v~v~~v~~~-----~dl~~~DGlILpGGg~~~--~~~~~l~~~~l~~~i~~~~~ 118 (578)
|+|+..... ....+.++++++| +++++++.. .++.++||||||||.... ....+.. .+.+.++++.+
T Consensus 2 i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~dgvil~Gg~~~~~~~~~~~~~--~~~~~i~~~~~ 79 (188)
T cd01741 2 ILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGPMSVDEDDYPWLK--KLKELIRQALA 79 (188)
T ss_pred EEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCCCCCcccCCEEEECCCCccCCccCChHHH--HHHHHHHHHHH
Confidence 566654321 2457888999998 677776543 247889999999986433 2333444 56788999999
Q ss_pred CCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccC---CcccccCC-CeEEEEEee
Q 045794 119 KDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKD---SEILDDVG-DHHVYFVHS 194 (578)
Q Consensus 119 ~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~---~~l~~~l~-~~~~~~~H~ 194 (578)
.++|+||||+|||+|+.++ | +++.+. ...++.|++++.++.. .+++++++ .+.++++|+
T Consensus 80 ~~~pilgiC~G~q~l~~~l-------G-----G~v~~~-----~~~~~~g~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~ 142 (188)
T cd01741 80 AGKPVLGICLGHQLLARAL-------G-----GKVGRN-----PKGWEIGWFPVTLTEAGKADPLFAGLPDEFPVFHWHG 142 (188)
T ss_pred CCCCEEEECccHHHHHHHh-------C-----CEEecC-----CCcceeEEEEEEeccccccCchhhcCCCcceEEEEec
Confidence 9999999999999999952 2 566552 1225789999988764 34566665 678999999
Q ss_pred eeeecCCCCCCcEEEEeecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHHHHh
Q 045794 195 YRAMPSDDNKEWVSSTCNYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLRRFL 248 (578)
Q Consensus 195 ~~v~~~~~~~~~~~~~~~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~~Fl 248 (578)
+.+...+.. ....++. ++..+++++. +++||+||||| ..++++|+
T Consensus 143 ~~v~~lp~~-~~~la~~--~~~~v~~~~~~~~~~g~QfHPE------~~~~~~f~ 188 (188)
T cd01741 143 DTVVELPPG-AVLLASS--EACPNQAFRYGDRALGLQFHPE------ERLLRNFL 188 (188)
T ss_pred cChhhCCCC-CEEeecC--CCCCcceEEecCCEEEEccCch------HHHHhhhC
Confidence 998765542 2222332 3456788885 69999999999 47888884
No 84
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=99.80 E-value=6.4e-19 Score=174.05 Aligned_cols=187 Identities=25% Similarity=0.247 Sum_probs=144.0
Q ss_pred EEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 303 VRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 303 ~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
.....+|+++|+.|.+.||+.||++|+++...+. .+.++.+++.+.+||+++++|++.++ ++.
T Consensus 27 ~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~------~~~~~~i~~~v~iPi~~~~~i~~~~~-----------v~~ 89 (217)
T cd00331 27 IREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGS------LEDLRAVREAVSLPVLRKDFIIDPYQ-----------IYE 89 (217)
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCC------HHHHHHHHHhcCCCEEECCeecCHHH-----------HHH
Confidence 3345799999999999999999999999875432 34555565567899999999999744 999
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
++++|||.|++++..+.. +.++ +++++. ..+|-+.
T Consensus 90 ~~~~Gad~v~l~~~~~~~--~~~~-------~~~~~~-~~~g~~~----------------------------------- 124 (217)
T cd00331 90 ARAAGADAVLLIVAALDD--EQLK-------ELYELA-RELGMEV----------------------------------- 124 (217)
T ss_pred HHHcCCCEEEEeeccCCH--HHHH-------HHHHHH-HHcCCeE-----------------------------------
Confidence 999999999999888762 2221 333332 3344221
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhh--CCCcEEEecCCCCHHHHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDA--VSIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~--~~ipVIasGGi~s~eDi~~l 540 (578)
.+.+++|. -++++.+.|++.+.+| .++++..++|+++++++++. .++|++++|||.+++|++++
T Consensus 125 ---~v~v~~~~---------e~~~~~~~g~~~i~~t--~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~ 190 (217)
T cd00331 125 ---LVEVHDEE---------ELERALALGAKIIGIN--NRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRL 190 (217)
T ss_pred ---EEEECCHH---------HHHHHHHcCCCEEEEe--CCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHH
Confidence 12233333 3677888999999999 57788889999999999887 46899999999999999999
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
.+ .|++||++||+++....+.+.++
T Consensus 191 ~~-~Ga~gvivGsai~~~~~p~~~~~ 215 (217)
T cd00331 191 AE-AGADAVLIGESLMRAPDPGAALR 215 (217)
T ss_pred HH-cCCCEEEECHHHcCCCCHHHHHH
Confidence 85 89999999999998775444443
No 85
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.80 E-value=7.8e-19 Score=194.61 Aligned_cols=178 Identities=21% Similarity=0.257 Sum_probs=122.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCe-EEEeCCcc----CC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFG-IKDVQTPE----DI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~-v~~v~~~~----dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
|.|+|..+++.+++.+.|+++|.+ +.++.+.. ++ .++|+|||+||+....+.. ...+.++. +..++|
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~-----~~~~li~~-~~~~~P 75 (534)
T PRK14607 2 IILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAG-----ISVEVIRH-FSGKVP 75 (534)
T ss_pred EEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCC-----ccHHHHHH-hhcCCC
Confidence 899999999999999999999985 66664332 22 3589999998864332211 12344544 467899
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCC
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSD 201 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~ 201 (578)
|||||+|||+|+.+ .| +++.+. ..++.|+........+++|.+++ .+.++++|++.+....
T Consensus 76 vLGIClG~QlLa~a-------~G-----g~V~~~------~~~~~G~~~~v~~~~~~lf~~~~~~~~v~~~Hs~~v~~~~ 137 (534)
T PRK14607 76 ILGVCLGHQAIGYA-------FG-----GKIVHA------KRILHGKTSPIDHNGKGLFRGIPNPTVATRYHSLVVEEAS 137 (534)
T ss_pred EEEEcHHHHHHHHH-------cC-----CeEecC------CccccCCceeEEECCCcchhcCCCCcEEeeccchheeccc
Confidence 99999999999995 23 455441 11234443332334556777776 5788999999875322
Q ss_pred CCCCcEEEEeecCCceEEEEEeC--CEEEEeeCCcccC-cchHHHHHHHhhhcc
Q 045794 202 DNKEWVSSTCNYGDNFIASVRRG--NVHAVQFHPEKSG-DVGLSVLRRFLHPKT 252 (578)
Q Consensus 202 ~~~~~~~~~~~~~d~~iegi~~~--~i~gvQFHPE~~~-~~~~~l~~~Fl~~~~ 252 (578)
.+.. +.......++.+++++++ ++||+|||||... .++..||++|++.+.
T Consensus 138 lp~~-~~vlA~s~d~~i~a~~~~~~pi~GvQFHPE~~~t~~g~~i~~nFl~~~~ 190 (534)
T PRK14607 138 LPEC-LEVTAKSDDGEIMGIRHKEHPIFGVQFHPESILTEEGKRILKNFLNYQR 190 (534)
T ss_pred CCCC-eEEEEEcCCCCEEEEEECCCCEEEEEeCCCCCCChhHHHHHHHHHHHhh
Confidence 2222 333333456779999953 7999999999853 478899999999765
No 86
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.80 E-value=1.3e-18 Score=173.72 Aligned_cols=177 Identities=17% Similarity=0.158 Sum_probs=120.1
Q ss_pred EEEEEE-CCCCCHHHHHHHHHHCCCeEEEeCCc------cCCCCCCEEEECCCCCchH----HHHHHHhhcHHHHHHHHH
Q 045794 49 VVTLLD-YGAGNVRSVRNAIRHLGFGIKDVQTP------EDILNANRLIFPGVGAFAA----AMDVLNKTGMAEALCAYI 117 (578)
Q Consensus 49 ~I~vld-~~~g~~~~i~~~L~~~Gv~v~~v~~~------~dl~~~DGlILpGGg~~~~----~~~~l~~~~l~~~i~~~~ 117 (578)
+|.|+- .+.--...+..+++++|+++.++... .++.++||||++||..... ...|+....+.++|++++
T Consensus 2 ~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~ 81 (235)
T PRK08250 2 RVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAGEALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAI 81 (235)
T ss_pred eEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCCCCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHHHH
Confidence 455553 22334456778889999888775422 1356799999999854322 222442124567899999
Q ss_pred hCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccC---CcccccCC-CeEEEEEe
Q 045794 118 EKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKD---SEILDDVG-DHHVYFVH 193 (578)
Q Consensus 118 ~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~---~~l~~~l~-~~~~~~~H 193 (578)
+.++|+||||+|+|+|+.+ .| ++|.+ ...+++|+.++.++.. ++++..++ .+.++++|
T Consensus 82 ~~~~PvlGIC~G~Qlla~a-------lG-----g~V~~------~~~~e~G~~~v~lt~~g~~d~l~~~~~~~~~v~~~H 143 (235)
T PRK08250 82 KAGKAVIGVCLGAQLIGEA-------LG-----AKYEH------SPEKEIGYFPITLTEAGLKDPLLSHFGSTLTVGHWH 143 (235)
T ss_pred HcCCCEEEEChhHHHHHHH-------hC-----ceecc------CCCCceeEEEEEEccccccCchhhcCCCCcEEEEEe
Confidence 9999999999999999995 23 67654 1236899999998763 46787776 78899999
Q ss_pred eeeeecCCCCCCcEEEEeecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHHHHhhhc
Q 045794 194 SYRAMPSDDNKEWVSSTCNYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLRRFLHPK 251 (578)
Q Consensus 194 ~~~v~~~~~~~~~~~~~~~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~~Fl~~~ 251 (578)
++.. ..|.... .++++ ....+++++. .++||+|||||++. .+++.|++..
T Consensus 144 ~d~~-~lP~~a~-~LA~s--~~~~~qa~~~~~~~~g~QfHPE~~~----~~~~~~~~~~ 194 (235)
T PRK08250 144 NDMP-GLTDQAK-VLATS--EGCPRQIVQYSNLVYGFQCHMEFTV----EAVELLIAHS 194 (235)
T ss_pred ccee-cCCCCCE-EEECC--CCCCceEEEeCCCEEEEeecCcCCH----HHHHHHHHhc
Confidence 9864 3444322 22332 2233688884 58999999999965 5677777644
No 87
>PRK06186 hypothetical protein; Validated
Probab=99.80 E-value=7.3e-19 Score=172.29 Aligned_cols=192 Identities=20% Similarity=0.207 Sum_probs=121.0
Q ss_pred cEEEEEE-CC--CCCHHHHHHHHHHCC------CeEEEeCCc-----cCCCCCCEEEECCCCCchHHHHHHHhhcHHHHH
Q 045794 48 SVVTLLD-YG--AGNVRSVRNAIRHLG------FGIKDVQTP-----EDILNANRLIFPGVGAFAAAMDVLNKTGMAEAL 113 (578)
Q Consensus 48 ~~I~vld-~~--~g~~~~i~~~L~~~G------v~v~~v~~~-----~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i 113 (578)
.+|+++. |- .....++.++|+.+| +++.+++.. ..|.++|||++|||-.. ...+ +....+
T Consensus 2 v~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~----rg~~--Gki~ai 75 (229)
T PRK06186 2 LRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPY----RNDD--GALTAI 75 (229)
T ss_pred cEEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCc----ccHh--HHHHHH
Confidence 3577774 21 124557777887765 355566543 23788999999998321 1122 667889
Q ss_pred HHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCccee---------eeEEEEEccCCcccccC
Q 045794 114 CAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQI---------GWNALQITKDSEILDDV 184 (578)
Q Consensus 114 ~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~---------G~~~i~~~~~~~l~~~l 184 (578)
+.+.+.++|+||||+|||++...+.. .++|+-+...+.|.++ .+.|-+ ..+++.+.+++.+.+.+
T Consensus 76 ~~Are~~iP~LGIClGmQ~avIe~ar----nv~g~~dA~s~E~~~~--~~~pvi~~~~~~~~~~~h~v~l~~~S~l~~iy 149 (229)
T PRK06186 76 RFARENGIPFLGTCGGFQHALLEYAR----NVLGWADAAHAETDPE--GDRPVIAPLSCSLVEKTGDIRLRPGSLIARAY 149 (229)
T ss_pred HHHHHcCCCeEeechhhHHHHHHHHh----hhcCCcCCCcCCCCCC--CCCCEEEECccccccCceEEEECCCCHHHHHh
Confidence 99999999999999999987765432 2344444444444433 111111 12677787777665544
Q ss_pred CCeEE-------EEEeeeeeecCCCCCCcEEEEeecCCceEEEEE---eCCEEEEeeCCcccCc--chHHHHHHHhhhcc
Q 045794 185 GDHHV-------YFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVR---RGNVHAVQFHPEKSGD--VGLSVLRRFLHPKT 252 (578)
Q Consensus 185 ~~~~~-------~~~H~~~v~~~~~~~~~~~~~~~~~d~~iegi~---~~~i~gvQFHPE~~~~--~~~~l~~~Fl~~~~ 252 (578)
..... |++++.+++... ...+..+....|+.+|+++ +.+++|||||||+.+. ....+|+.|++.+.
T Consensus 150 g~~~i~erhrHryeVNs~h~q~i~--~~GL~vsa~s~DG~iEaiE~~~hpf~lGVQwHPE~~s~~~~~~~LF~~Fv~aa~ 227 (229)
T PRK06186 150 GTLEIEEGYHCRYGVNPEFVAALE--SGDLRVTGWDEDGDVRAVELPGHPFFVATLFQPERAALAGRPPPLVRAFLRAAR 227 (229)
T ss_pred CCCeeeeeccccEEECHHHHHHHh--cCCeEEEEEcCCCCEEEEEeCCCCcEEEEeCCCCccCCCCCCCHHHHHHHHHHh
Confidence 42222 334444444443 3345556666678899999 3579999999998543 34589999998875
Q ss_pred C
Q 045794 253 N 253 (578)
Q Consensus 253 ~ 253 (578)
+
T Consensus 228 ~ 228 (229)
T PRK06186 228 A 228 (229)
T ss_pred c
Confidence 3
No 88
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=99.80 E-value=2.8e-18 Score=166.55 Aligned_cols=186 Identities=23% Similarity=0.317 Sum_probs=135.8
Q ss_pred EEEEECC-CCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEec
Q 045794 50 VTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICL 128 (578)
Q Consensus 50 I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGICl 128 (578)
|+|++|+ .+|+.++.++++..|+++++++..+++.++|+||||||.++...+.+++...+.+.|+++++.++||||||+
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~ 80 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPEGLGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICG 80 (194)
T ss_pred CEeecCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECH
Confidence 5788997 899999999999999999999998888899999999998777777676555788999999999999999999
Q ss_pred hHHHHhhhcccC--CC----cCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCC
Q 045794 129 GLQLLFQSSEEN--GP----VNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 129 G~QlLa~a~~e~--~~----~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~ 202 (578)
|+|+|++.+.+. .. ..|+|++|+++.. . ....+|+.......+ ..-..+.+|++|+......+.
T Consensus 81 G~qlL~~~~~~~~g~~~~~~~~glGll~~~~~~-~-----~~~~~g~~~~~~~~~----~~~~~~~G~EfH~~~~~~~~~ 150 (194)
T cd01750 81 GYQMLGKYIVDPEGVEGPGEIEGLGLLDVETEF-G-----PEKTTRRVTGRLDEE----GEGGEVTGYEIHSGRTTLGDG 150 (194)
T ss_pred HHHHhhhhccCCCCcccCCCcccccccceEEEe-c-----CCeEEEEEEEEEccC----CCCCeEEEEcCCCcEEeCCCC
Confidence 999999998532 22 6899999999864 2 123567666554322 011257889999887653222
Q ss_pred CCCcEEEEeecCCceEEEEEeC-CEEEEeeCCcccCcchHHHHHHHh
Q 045794 203 NKEWVSSTCNYGDNFIASVRRG-NVHAVQFHPEKSGDVGLSVLRRFL 248 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~~~-~i~gvQFHPE~~~~~~~~l~~~Fl 248 (578)
...+.....+......+++..+ +++|++.|--+.+ ..+.++|+
T Consensus 151 ~~~~~~~~g~~~~~~~eG~~~~~n~~aty~Hg~f~~---~~~~~~~l 194 (194)
T cd01750 151 ARPLGKGYGNNGEDGTDGAVSGDNVIGTYLHGIFLN---DAFRDALL 194 (194)
T ss_pred CccceeccccCCCCCcCcEEccCcEEEECceeccCC---HHHHHhhC
Confidence 2223211111111123678878 9999999988754 35666664
No 89
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.79 E-value=3.7e-18 Score=158.31 Aligned_cols=189 Identities=25% Similarity=0.385 Sum_probs=131.6
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCC-CeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEE
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLG-FGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGI 126 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~G-v~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGI 126 (578)
++|+|+.+ +|.+....+++++++ +++..++.+++++.+||||||||+++. ....+.+.++.+.|++++..|+|+||.
T Consensus 1 m~IGVLal-QG~v~EH~~~l~~~~~~e~~~Vk~~~dL~~~d~LIiPGGESTT-i~rL~~~~gl~e~l~~~~~~G~Pv~GT 78 (194)
T COG0311 1 MKIGVLAL-QGAVEEHLEALEKAGGAEVVEVKRPEDLEGVDGLIIPGGESTT-IGRLLKRYGLLEPLREFIADGLPVFGT 78 (194)
T ss_pred CeEEEEEe-cccHHHHHHHHHhhcCCceEEEcCHHHhccCcEEEecCccHHH-HHHHHHHcCcHHHHHHHHHcCCceEEe
Confidence 46999999 699999999999995 999999999999999999999998643 223445668999999999999999999
Q ss_pred echHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC---CeEEEEEeeeeeecCCCC
Q 045794 127 CLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG---DHHVYFVHSYRAMPSDDN 203 (578)
Q Consensus 127 ClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~---~~~~~~~H~~~v~~~~~~ 203 (578)
|.|+.+|+..+.++.....||+++.+|.+. .+|.+.-.+..+-.+ +++. .+..-+...-.+.....
T Consensus 79 CAGlIlLakei~~~~~~~~Lg~mdi~V~RN---------AfGRQ~dSFe~~~di-~~~~~~~~~~avFIRAP~I~~vg~- 147 (194)
T COG0311 79 CAGLILLAKEILDGPEQPLLGLLDVTVRRN---------AFGRQVDSFETELDI-EGFGLPFPFPAVFIRAPVIEEVGD- 147 (194)
T ss_pred chhhhhhhhhhcCCCCCcccceEEEEEEcc---------ccccccccceeeEEe-ecccCCCcceEEEEEcceeehhcC-
Confidence 999999998765444567799999998871 123211111110000 0111 12222322222222211
Q ss_pred CCcEEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccCC
Q 045794 204 KEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 204 ~~~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~ 254 (578)
.+.+.+..+ +.+-+++++|++++.||||.+.+. ++.++|++.+...
T Consensus 148 --~V~vLa~l~-~~iVav~qgn~LatsFHPELT~D~--r~Heyf~~~v~~~ 193 (194)
T COG0311 148 --GVEVLATLD-GRIVAVKQGNILATSFHPELTDDT--RLHEYFLDMVLGA 193 (194)
T ss_pred --cceEeeeeC-CEEEEEEeCCEEEEecCccccCCc--cHHHHHHHHhhcc
Confidence 233333333 356788899999999999998644 8899999887653
No 90
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.78 E-value=3.5e-18 Score=172.43 Aligned_cols=179 Identities=18% Similarity=0.182 Sum_probs=110.1
Q ss_pred HHHHHHHHHCCCeEEEeCCc----cC----CCCCCEEEECCCC-CchHH-------H---HHHHhhcHHHHHHHHHhCCC
Q 045794 61 RSVRNAIRHLGFGIKDVQTP----ED----ILNANRLIFPGVG-AFAAA-------M---DVLNKTGMAEALCAYIEKDR 121 (578)
Q Consensus 61 ~~i~~~L~~~Gv~v~~v~~~----~d----l~~~DGlILpGGg-~~~~~-------~---~~l~~~~l~~~i~~~~~~g~ 121 (578)
..+++++.++|.....++.. +. ++.+|||||+||+ +..+. . ...++....++++.+++.++
T Consensus 29 ~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~ 108 (254)
T PRK11366 29 EKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRI 108 (254)
T ss_pred HHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCC
Confidence 35778999999876666632 11 3669999999985 33211 0 11122234678898999999
Q ss_pred CEEEEechHHHHhhhcccCCCcCCCcccCceeeee--------cCCCCCC----cceeeeEEEEEccCCcccccCC---C
Q 045794 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRF--------DSSNGFR----VPQIGWNALQITKDSEILDDVG---D 186 (578)
Q Consensus 122 PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~--------~~~~~~~----~~~~G~~~i~~~~~~~l~~~l~---~ 186 (578)
||||||+|||+|+.++ | +++.+- .+..... ......+.+.+++++.+...++ .
T Consensus 109 PILGICrG~Qllnva~-------G-----Gtl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~~~~s~l~~i~~~~~~ 176 (254)
T PRK11366 109 PIFAICRGLQELVVAT-------G-----GSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQVEEGGLLSALLPECSN 176 (254)
T ss_pred CEEEECHhHHHHHHHh-------C-----CeEeecccccccccccccCCccccccccCCceEEEECCCCcHHHhcCCCce
Confidence 9999999999999962 3 222210 0000000 0011346777776654433322 2
Q ss_pred eEEEEEeeeeeecCCCCCCcEEEEeecCCceEEEEEeC--C-EEEEeeCCcccCc---chHHHHHHHhhhccCC
Q 045794 187 HHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRG--N-VHAVQFHPEKSGD---VGLSVLRRFLHPKTNI 254 (578)
Q Consensus 187 ~~~~~~H~~~v~~~~~~~~~~~~~~~~~d~~iegi~~~--~-i~gvQFHPE~~~~---~~~~l~~~Fl~~~~~~ 254 (578)
+.+..+|+..+. ..+..+.+.....++.+|+++.. + ++|||||||+... ....||++|++.++..
T Consensus 177 ~~Vns~H~q~V~---~l~~gl~v~A~s~dg~ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~~ 247 (254)
T PRK11366 177 FWVNSLHGQGAK---VVSPRLRVEARSPDGLVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITACQHH 247 (254)
T ss_pred EEeehHHHHHHh---hcccceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHHHH
Confidence 344445554443 33334555555677899999943 3 6999999998643 2368999999988643
No 91
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.77 E-value=1.1e-17 Score=151.36 Aligned_cols=193 Identities=17% Similarity=0.263 Sum_probs=131.5
Q ss_pred cccCCCCCcEEEEEECCCCCHHHHHHHH-HHCCCeEEEeCCcc----CC--CCCCEEEE-CCCCCchHHHHHHHhhcHHH
Q 045794 40 SIRATSSDSVVTLLDYGAGNVRSVRNAI-RHLGFGIKDVQTPE----DI--LNANRLIF-PGVGAFAAAMDVLNKTGMAE 111 (578)
Q Consensus 40 ~~~~~~~~~~I~vld~~~g~~~~i~~~L-~~~Gv~v~~v~~~~----dl--~~~DGlIL-pGGg~~~~~~~~l~~~~l~~ 111 (578)
+.+.+..++ |.++|..+++..|++++| .+.|+.+.+++.++ ++ .++++++| ||++.+.+. .+. .+
T Consensus 12 A~~~~~n~p-iv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~Ds--GIs----~~ 84 (223)
T KOG0026|consen 12 ANSSKQNGP-IIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDS--GIS----LQ 84 (223)
T ss_pred hccccccCC-EEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccc--cch----HH
Confidence 333344555 777777789999999999 78899999988764 23 46888887 666654421 111 23
Q ss_pred HHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEE
Q 045794 112 ALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVY 190 (578)
Q Consensus 112 ~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~ 190 (578)
.++++ ...+|+||||+|.|.|..++...-.+.|.+++.+++.+...+ + .....+|++++ ++.+-
T Consensus 85 ~i~~f-~~~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D--------~------~~~~G~f~g~~q~~~V~ 149 (223)
T KOG0026|consen 85 TVLEL-GPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYD--------E------KGEEGLFSGLSNPFIVG 149 (223)
T ss_pred HHHHh-CCCCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccC--------C------ccccccccCCCCCeEEE
Confidence 44443 467999999999999999631111233444454544321110 0 01235788888 78888
Q ss_pred EEeeeeeecCCCCCCcEEEEeecCCceEEEEEeC---CEEEEeeCCccc-CcchHHHHHHHhhhccCC
Q 045794 191 FVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRG---NVHAVQFHPEKS-GDVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 191 ~~H~~~v~~~~~~~~~~~~~~~~~d~~iegi~~~---~i~gvQFHPE~~-~~~~~~l~~~Fl~~~~~~ 254 (578)
.+|+........+..-+.++++..++.+++.+++ .+-|+|||||.. ...+..+++||++.....
T Consensus 150 RYHSLa~~~sSlP~d~L~VTawTEnG~iMgaRHkKY~~ieGVQfHPESIlteeGk~~irNflni~~~t 217 (223)
T KOG0026|consen 150 RYHSLVIEKDSFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIVEKK 217 (223)
T ss_pred eeeeeeeecccCCccceeeeEeccCcEEEeeeccccccccceeecchhhhhhhhHHHHHHHHHhcccc
Confidence 9999877655444456677888888999999964 588999999985 447889999999987653
No 92
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.77 E-value=5.1e-18 Score=170.04 Aligned_cols=164 Identities=21% Similarity=0.283 Sum_probs=109.8
Q ss_pred HHHHHHHHHCCCe---EEEeCC--c----cCCCCCCEEEECCCCCchHH-----HHHHHh--hcHHHHHHHHHhCCCCEE
Q 045794 61 RSVRNAIRHLGFG---IKDVQT--P----EDILNANRLIFPGVGAFAAA-----MDVLNK--TGMAEALCAYIEKDRPFL 124 (578)
Q Consensus 61 ~~i~~~L~~~Gv~---v~~v~~--~----~dl~~~DGlILpGGg~~~~~-----~~~l~~--~~l~~~i~~~~~~g~PIl 124 (578)
..+.+++++.|.. +.+++. . .++.+||||||+||.....+ ..|+.. ..+.+.++.+++.++|||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvL 97 (242)
T PRK07567 18 AEYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFL 97 (242)
T ss_pred chHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 4667788888854 444322 1 25678999999998532221 345431 123456666668999999
Q ss_pred EEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEcc---CCcccccCC-CeEEEEEeeeeeecC
Q 045794 125 GICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK---DSEILDDVG-DHHVYFVHSYRAMPS 200 (578)
Q Consensus 125 GIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~---~~~l~~~l~-~~~~~~~H~~~v~~~ 200 (578)
|||+|||+|+.+ .| +++.+ ...+++|+.++.++. .++++..++ .+.++++|++.+...
T Consensus 98 GIC~G~Qlla~a-------~G-----G~V~~------~~g~e~G~~~v~l~~~g~~~~l~~~~~~~~~~~~~H~d~V~~l 159 (242)
T PRK07567 98 GACYGVGTLGHH-------QG-----GVVDR------TYGEPVGAVTVSLTDAGRADPLLAGLPDTFTAFVGHKEAVSAL 159 (242)
T ss_pred EEchhHHHHHHH-------cC-----CEEec------CCCCcCccEEEEECCccCCChhhcCCCCceEEEeehhhhhhhC
Confidence 999999999995 23 66654 122578999998875 356787776 689999999987655
Q ss_pred CCCCCcEEEEeecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 201 DDNKEWVSSTCNYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 201 ~~~~~~~~~~~~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
+.... +.+++ .+..+++++. +++||+|||||++. .++..|+.
T Consensus 160 p~~~~-vlA~s--~~~~vqa~~~~~~~~gvQfHPE~~~----~~~~~~~~ 202 (242)
T PRK07567 160 PPGAV-LLATS--PTCPVQMFRVGENVYATQFHPELDA----DGLKTRID 202 (242)
T ss_pred CCCCE-EEEeC--CCCCEEEEEeCCCEEEEEeCCcCCH----HHHHHHHH
Confidence 54322 22332 3445789985 58999999999976 34445543
No 93
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.77 E-value=7.9e-18 Score=158.13 Aligned_cols=186 Identities=27% Similarity=0.381 Sum_probs=118.0
Q ss_pred EEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCC-CCEEEEechH
Q 045794 52 LLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKD-RPFLGICLGL 130 (578)
Q Consensus 52 vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g-~PIlGIClG~ 130 (578)
|+.+ .|.+....+.|+++|++...++.+++|.++||||||||+++. ....+...++.+.|++++..+ +||||+|.|+
T Consensus 1 VLAL-QG~~~EH~~~l~~lg~~~~~Vr~~~dL~~~dgLIiPGGESTt-i~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGl 78 (188)
T PF01174_consen 1 VLAL-QGAFREHIRMLERLGAEVVEVRTPEDLEGLDGLIIPGGESTT-IGKLLRRYGLFEPLREFIRSGSKPVWGTCAGL 78 (188)
T ss_dssp EESS-SSSHHHHHHHHHHTTSEEEEE-SGGGGTT-SEEEE-SS-HHH-HHHHHHHTTHHHHHHHHHHTT--EEEEETHHH
T ss_pred CCcc-ccChHHHHHHHHHcCCCeEEeCCHHHHccCCEEEECCCcHHH-HHHHHHHcCCHHHHHHHHHcCCCceeehhHHH
Confidence 4555 588999999999999999999999999999999999998643 223445678999999999998 9999999999
Q ss_pred HHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcEEEE
Q 045794 131 QLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSST 210 (578)
Q Consensus 131 QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~~~~ 210 (578)
.|||..+... ....+|+++.+|.+... +.+.-.+ ...+.+..-. .++.+.+..--.+.....+ ..+...
T Consensus 79 IlLa~~v~~~-~q~~Lg~ldi~V~RNaf--GrQ~~SF-e~~l~i~~~~------~~~~avFIRAP~I~~v~~~-~~v~vl 147 (188)
T PF01174_consen 79 ILLAKEVEGQ-GQPLLGLLDITVRRNAF--GRQLDSF-EADLDIPGLG------EPFPAVFIRAPVIEEVGSP-EGVEVL 147 (188)
T ss_dssp HHHEEEECSS-CCTSS--EEEEEETTTT--CSSSCEE-EEEEEETTTE------SEEEEEESS--EEEEE--T-TTEEEE
T ss_pred HHhhhhhhhc-ccccccceeEEEEcccc--ccchhcE-EEEEEeecCC------CcEEEEEcCCcEEEEeecc-cccccc
Confidence 9999976443 34568899999887111 0111111 1122221110 1233333222222222211 223333
Q ss_pred eecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 211 CNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 211 ~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
...+ +.+-+++++|++++-||||.+.+ +.++.++|++++.
T Consensus 148 a~~~-g~iVav~qgn~latsFHPELT~D-~~r~H~yFl~~v~ 187 (188)
T PF01174_consen 148 AELD-GKIVAVRQGNILATSFHPELTDD-DTRIHEYFLEMVV 187 (188)
T ss_dssp EEET-TEEEEEEETTEEEESS-GGGSST-HCHHHHHHHHHHC
T ss_pred cccc-cceEEEEecCEEEEEeCCcccCc-hhHHHHHHHHHhh
Confidence 3333 35668889999999999999875 2489999998864
No 94
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=99.76 E-value=3.3e-17 Score=159.53 Aligned_cols=181 Identities=19% Similarity=0.184 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHCCCeEEEeCCc--cCCCCCCEEEECCCCCchHHHHHHHh-hcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 59 NVRSVRNAIRHLGFGIKDVQTP--EDILNANRLIFPGVGAFAAAMDVLNK-TGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 59 ~~~~i~~~L~~~Gv~v~~v~~~--~dl~~~DGlILpGGg~~~~~~~~l~~-~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
++.+..++|+++|++++++++. +++.++|+||||||.... .+..+.. .++.+.|++++++++||+|||.|+|||++
T Consensus 12 ~y~e~~~~l~~~G~~v~~~s~~~~~~l~~~D~lilPGG~~~~-~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~ 90 (198)
T cd03130 12 YYPENLELLEAAGAELVPFSPLKDEELPDADGLYLGGGYPEL-FAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGE 90 (198)
T ss_pred ccHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCchHH-HHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHH
Confidence 4556778999999999999884 567779999999975432 2455543 46889999999999999999999999999
Q ss_pred hcccC--CCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcEEEEeec
Q 045794 136 SSEEN--GPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNY 213 (578)
Q Consensus 136 a~~e~--~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~~~~~~~ 213 (578)
.+.+. ....|+|++|+++.++. + .++||..++...++++...-..+.+|++|...+...+............
T Consensus 91 ~~~d~~g~~~~glGll~~~~~~~~-----~-~~~g~~~~~~~~~~~~~~~g~~v~G~E~H~g~t~~~~~~~~~~~~~~~~ 164 (198)
T cd03130 91 SLDDEEGQSYPMAGVLPGDARMTK-----R-LGLGYREAEALGDTLLGKKGTTLRGHEFHYSRLEPPPEPDFAATVRRGR 164 (198)
T ss_pred HhhccCCCEeccccccceeeEEcC-----C-CcccCEEEEeecCccccCCCCEEEEEeccCcEeecCCCcceEEEeccCC
Confidence 98763 36789999999998632 2 3899998877655554332225799999988765321111111111111
Q ss_pred C-CceEEEEEeCCEEEEeeCCcccCcchHHHHHHHh
Q 045794 214 G-DNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFL 248 (578)
Q Consensus 214 ~-d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl 248 (578)
+ ++..+++..++++|+++|--+.+ ...+.++|+
T Consensus 165 ~~~~~~dG~~~~nv~gtY~Hg~f~~--n~~~~~~~~ 198 (198)
T cd03130 165 GIDGGEDGYVYGNVLASYLHLHWAS--NPDLAERFV 198 (198)
T ss_pred CCCCcccEEEECCEEEEEeeeeccc--CHHHHHHhC
Confidence 2 12236777899999999987754 335677664
No 95
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.76 E-value=1.8e-17 Score=164.72 Aligned_cols=187 Identities=22% Similarity=0.382 Sum_probs=120.7
Q ss_pred cEEEEEECCCC-CHHHHHHHHHHCCCeEEEeCCcc-CCCCCCEEEECCCCCchHHHH--HH-HhhcHHHHHHHHHhCCCC
Q 045794 48 SVVTLLDYGAG-NVRSVRNAIRHLGFGIKDVQTPE-DILNANRLIFPGVGAFAAAMD--VL-NKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 48 ~~I~vld~~~g-~~~~i~~~L~~~Gv~v~~v~~~~-dl~~~DGlILpGGg~~~~~~~--~l-~~~~l~~~i~~~~~~g~P 122 (578)
++|+|++++-. .-.++.++|+++|+++..+...+ +++++|+||||||.++.+... .+ ....+.++++++.+.++|
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~~l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~p 80 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDGSLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVP 80 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCCCCCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCE
Confidence 46999999744 45678999999999988775543 478999999999864432211 11 112356788899999999
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCccee--eeEEEEEcc-CCcccccCC-CeEEEE--Eeeee
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQI--GWNALQITK-DSEILDDVG-DHHVYF--VHSYR 196 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~--G~~~i~~~~-~~~l~~~l~-~~~~~~--~H~~~ 196 (578)
|+|||.|+|+|+. +|++++.+.+ ....++ +|..+++.. .+++++.++ ....+. .|...
T Consensus 81 vlgIC~G~QlLa~----------~GlL~G~l~~------n~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~pi~H~eG 144 (227)
T TIGR01737 81 VLGICNGFQILVE----------AGLLPGALLP------NDSLRFICRWVYLRVENADTIFTKNYKKGEVIRIPIAHGEG 144 (227)
T ss_pred EEEECHHHHHHHH----------cCCCCCceee------cCCCceEEEeEEEEECCCCChhhccCCCCCEEEEEeEcCCc
Confidence 9999999999998 3456666544 112334 455555543 356776666 222222 45444
Q ss_pred eecCCC-------CCCcEEEEeec----------CC---ceEEEEEe--CCEEEEeeCCccc------CcchHHHHHHHh
Q 045794 197 AMPSDD-------NKEWVSSTCNY----------GD---NFIASVRR--GNVHAVQFHPEKS------GDVGLSVLRRFL 248 (578)
Q Consensus 197 v~~~~~-------~~~~~~~~~~~----------~d---~~iegi~~--~~i~gvQFHPE~~------~~~~~~l~~~Fl 248 (578)
....+. ....+...... .+ ..++++.+ ++++|+|||||.. +.++..||++|+
T Consensus 145 ~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~~~g~~~HpE~~~~~~~~~~~g~~~~~~~~ 224 (227)
T TIGR01737 145 RYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGNVLGMMPHPERASEKLLGGDDGLKLFESLV 224 (227)
T ss_pred CeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCCEEEEecCchhhcccccCCcccHHHHHHHH
Confidence 321110 11122222211 22 34667774 6999999999986 448999999998
Q ss_pred hh
Q 045794 249 HP 250 (578)
Q Consensus 249 ~~ 250 (578)
+.
T Consensus 225 ~~ 226 (227)
T TIGR01737 225 EW 226 (227)
T ss_pred hh
Confidence 64
No 96
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.75 E-value=9.1e-18 Score=162.28 Aligned_cols=145 Identities=23% Similarity=0.245 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHCCCeEEEeCCcc-------CCCCCCEEEECCCCCchHHH------H------HHHhhcHHHHHHHHHhC
Q 045794 59 NVRSVRNAIRHLGFGIKDVQTPE-------DILNANRLIFPGVGAFAAAM------D------VLNKTGMAEALCAYIEK 119 (578)
Q Consensus 59 ~~~~i~~~L~~~Gv~v~~v~~~~-------dl~~~DGlILpGGg~~~~~~------~------~l~~~~l~~~i~~~~~~ 119 (578)
...++.++|+.+|+.+.+++... .+.++||||||||++..+.. . ..+.....+.++.+++.
T Consensus 20 ~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 99 (189)
T cd01745 20 LNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALER 99 (189)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHC
Confidence 45688999999999988887653 24789999999997654321 0 01111235778888889
Q ss_pred CCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeec
Q 045794 120 DRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMP 199 (578)
Q Consensus 120 g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~ 199 (578)
++|+||||+|||+|+.+ .| +++.+ . + .++.+|++.+..
T Consensus 100 ~~PilgiC~G~Q~l~~~-------~G-----g~v~~------~--~----------------------~v~~~H~~~v~~ 137 (189)
T cd01745 100 GKPILGICRGMQLLNVA-------LG-----GTLYQ------D--I----------------------RVNSLHHQAIKR 137 (189)
T ss_pred CCCEEEEcchHHHHHHH-------hC-----CeEEc------C--C----------------------ceechHHHHHhh
Confidence 99999999999999995 23 55432 0 0 235678877654
Q ss_pred CCCCCCcEEEEeecCCceEEEEEe---CCEEEEeeCCcccC---cchHHHHHHHh
Q 045794 200 SDDNKEWVSSTCNYGDNFIASVRR---GNVHAVQFHPEKSG---DVGLSVLRRFL 248 (578)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~iegi~~---~~i~gvQFHPE~~~---~~~~~l~~~Fl 248 (578)
.+. .+.......++.+++++. .+++|+|||||... .++.+||++|+
T Consensus 138 ~~~---~~~vla~~~d~~vea~~~~~~~~~~gvQfHPE~~~~~~~~~~~if~~f~ 189 (189)
T cd01745 138 LAD---GLRVEARAPDGVIEAIESPDRPFVLGVQWHPEWLADTDPDSLKLFEAFV 189 (189)
T ss_pred cCC---CCEEEEECCCCcEEEEEeCCCCeEEEEecCCCcCcccCchHhHHHHHhC
Confidence 432 223333345678999995 38999999999965 37889999985
No 97
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.74 E-value=4.8e-18 Score=159.60 Aligned_cols=169 Identities=22% Similarity=0.298 Sum_probs=121.1
Q ss_pred HHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHh
Q 045794 343 LQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRV 422 (578)
Q Consensus 343 ~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (578)
.+.|++|.+.+++|| +|-=-+.++|.++|||||+++++++.++|||.|.+......+| +.+ .++++++.++
T Consensus 21 ~~dI~aik~~v~lPI-IGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp-~~l-------~~li~~i~~~ 91 (192)
T PF04131_consen 21 VEDIRAIKKAVDLPI-IGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP-ETL-------EELIREIKEK 91 (192)
T ss_dssp HHHHHHHHTTB-S-E-EEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S-S-H-------HHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCE-EEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC-cCH-------HHHHHHHHHh
Confidence 577888988999999 4444477889999999999999999999999999988777765 333 5899999988
Q ss_pred CCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe--cc
Q 045794 423 YGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN--CI 500 (578)
Q Consensus 423 ~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t--di 500 (578)
| .-++. | ++.+|-+..+.++|++.|--| ..
T Consensus 92 ~--~l~MA--D--------------------------------------------ist~ee~~~A~~~G~D~I~TTLsGY 123 (192)
T PF04131_consen 92 Y--QLVMA--D--------------------------------------------ISTLEEAINAAELGFDIIGTTLSGY 123 (192)
T ss_dssp T--SEEEE--E---------------------------------------------SSHHHHHHHHHTT-SEEE-TTTTS
T ss_pred C--cEEee--e--------------------------------------------cCCHHHHHHHHHcCCCEEEcccccC
Confidence 8 43443 3 344788999999999988744 22
Q ss_pred CCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 501 DCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 501 ~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+.+-...+||+++++++++. ++|||+.|++.++++++++++ .||++|+||+|+....+..+.+.+.++
T Consensus 124 T~~t~~~~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~-~GA~aVVVGsAITrP~~It~~F~~ai~ 191 (192)
T PF04131_consen 124 TPYTKGDGPDFELVRELVQA-DVPVIAEGRIHTPEQAAKALE-LGAHAVVVGSAITRPQEITKRFVDAIK 191 (192)
T ss_dssp STTSTTSSHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHH-TT-SEEEE-HHHH-HHHHHHHHHHHCH
T ss_pred CCCCCCCCCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHh-cCCeEEEECcccCCHHHHHHHHHHHHh
Confidence 33333389999999999986 899999999999999999996 999999999999876665555555544
No 98
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.73 E-value=2.6e-17 Score=162.36 Aligned_cols=162 Identities=24% Similarity=0.274 Sum_probs=94.3
Q ss_pred HHHHHHHHHCCCeEEEeCCccC-------CCCCCEEEECCCC-CchHH------------HHHHHhhcHHHHHHHHHhCC
Q 045794 61 RSVRNAIRHLGFGIKDVQTPED-------ILNANRLIFPGVG-AFAAA------------MDVLNKTGMAEALCAYIEKD 120 (578)
Q Consensus 61 ~~i~~~L~~~Gv~v~~v~~~~d-------l~~~DGlILpGGg-~~~~~------------~~~l~~~~l~~~i~~~~~~g 120 (578)
.+++++++++|..+..++...+ ++.+|||+||||+ +-.+. .+..++.-...+++.+.+.+
T Consensus 27 ~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~ 106 (217)
T PF07722_consen 27 ASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRG 106 (217)
T ss_dssp HHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcC
Confidence 4789999999999988877522 5789999999998 33211 11112222356677788889
Q ss_pred CCEEEEechHHHHhhhcccCCCcCCCcccC-cee--eeecCCCCCCcceeeeEEEEEccCCcccccCC--CeEEEEEeee
Q 045794 121 RPFLGICLGLQLLFQSSEENGPVNGLGLIP-GVV--GRFDSSNGFRVPQIGWNALQITKDSEILDDVG--DHHVYFVHSY 195 (578)
Q Consensus 121 ~PIlGIClG~QlLa~a~~e~~~~~Glgl~~-~~v--~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~--~~~~~~~H~~ 195 (578)
+||||||+|||+|+.++ |-.+.. ... ...... .......++.+.+.+++.+.+.+. ...+..+|+.
T Consensus 107 ~PilGICrG~Q~lnv~~-------GGtl~q~~~~~~~~~~~~--~~~~~~~~h~v~i~~~s~l~~~~~~~~~~vns~Hhq 177 (217)
T PF07722_consen 107 KPILGICRGMQLLNVAF-------GGTLYQDIPDQPGFPDHR--QHPQDFPSHPVRIVPGSLLAKILGSEEIEVNSFHHQ 177 (217)
T ss_dssp --EEEETHHHHHHHHHC-------CSSEESCCCCSS-EEECE--E-S-TS--EEEEEETTSTCCCTSHHCTEEEEEEECE
T ss_pred CCEEEEcHHHHHHHHHh-------CCCceeecccCcCccccc--ccccccccccceeccCchHHHHhCcCcceeecchhh
Confidence 99999999999999963 211100 000 000000 001134568888887777665543 5677777777
Q ss_pred eeecCCCCCCcEEEEeecCCceEEEEE---eC-CEEEEeeCCc
Q 045794 196 RAMPSDDNKEWVSSTCNYGDNFIASVR---RG-NVHAVQFHPE 234 (578)
Q Consensus 196 ~v~~~~~~~~~~~~~~~~~d~~iegi~---~~-~i~gvQFHPE 234 (578)
.+... +..+.+.+...|+.+|+++ ++ +++|+|||||
T Consensus 178 ~v~~l---~~~l~v~A~s~Dg~iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 178 AVKPL---GEGLRVTARSPDGVIEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp EECCH---HCCEEEEEEECTSSEEEEEECCESS-EEEESS-CC
T ss_pred hhhcc---CCCceEEEEecCCcEEEEEEcCCCCCEEEEEeCCC
Confidence 66543 3345555555588999998 34 7999999998
No 99
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.72 E-value=1.8e-17 Score=170.91 Aligned_cols=260 Identities=20% Similarity=0.273 Sum_probs=168.3
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC---C--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED---I--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d---l--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
-.|+|+|+|+.+-+-|.|.+++.-+..+.++.... + ..+-||||+||+.+..+.+... +...+ .+-++|
T Consensus 17 d~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~t~~~~i~~~~~rgiIiSGGP~SVya~dAP~---~dp~i---f~~~vp 90 (552)
T KOG1622|consen 17 DTILILDFGAQYGKVIDRRVRELNVQSEILPLTTPAKTITEYGPRGIIISGGPNSVYAEDAPS---FDPAI---FELGVP 90 (552)
T ss_pred ceEEEEeccchhhHHHHHHHHHHhhhhhhccCCChhhhhhcCCceEEEEeCCCCccccCcCCC---CChhH---hccCCc
Confidence 45999999999999999999999987777765432 3 4689999999976554332221 11222 234799
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-Ce--EEEEEeeeeeec
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DH--HVYFVHSYRAMP 199 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~--~~~~~H~~~v~~ 199 (578)
+||||.|||+|+.. .| +.|.+ ...++.|-.++.+.....+|+++. .. .++..|++.+..
T Consensus 91 vLGICYGmQ~i~~~-------~G-----g~V~~------~~~RE~G~~eI~v~~~~~lF~~~~~~~~~~VlltHgdsl~~ 152 (552)
T KOG1622|consen 91 VLGICYGMQLINKL-------NG-----GTVVK------GMVREDGEDEIEVDDSVDLFSGLHKTEFMTVLLTHGDSLSK 152 (552)
T ss_pred ceeehhHHHHHHHH-------hC-----Ccccc------ccccCCCCceEEcCchhhhhhhhcccceeeeeeccccchhh
Confidence 99999999999993 23 34433 123456777777776777887765 22 477889988776
Q ss_pred CCCCCCcEEEEeecCCceEEEEE--eCCEEEEeeCCcccCc-chHHHHHHHh-hhccCCCCCCCcccccccceeEEEeee
Q 045794 200 SDDNKEWVSSTCNYGDNFIASVR--RGNVHAVQFHPEKSGD-VGLSVLRRFL-HPKTNIPKKPTEGKALKLAKRVIACLD 275 (578)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~iegi~--~~~i~gvQFHPE~~~~-~~~~l~~~Fl-~~~~~~~~~~~~~~~~~~~~riIp~iD 275 (578)
.+.. +.+.....+..+.++. .+++||+|||||.+.+ .+..++++|+ +.+.+...+.... .+... |-.|-
T Consensus 153 v~~g---~kv~a~s~n~~va~i~~e~kkiyglqfhpEV~~t~~g~~ll~nFl~~vc~~~~n~tmen-re~e~---I~~i~ 225 (552)
T KOG1622|consen 153 VPEG---FKVVAFSGNKPVAGILNELKKIYGLQFHPEVTLTPNGKELLKNFLFDVCGCSGNFTMEN-REEEC---INEIR 225 (552)
T ss_pred cccc---ceeEEeecCcceeeehhhhhhhhcCCCCCcccccCchhHHHHHHHHHHcCCccCcchhh-hhHHH---HHHHH
Confidence 6543 3344444444445555 4699999999999765 7899999999 7777776643221 11111 10010
Q ss_pred EeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEeccc-CCCCCCCCchhHHHHHHHhhhc
Q 045794 276 VRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITG-FRDFPLGDLPMLQVLRLTSENV 353 (578)
Q Consensus 276 l~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~-~~~~~~~~~~~~~~i~~i~~~~ 353 (578)
=.-. +-+|+ ++.|.- ++-+..+-..+..|.+++|-+-.|. .+ +..+.+.+++-....
T Consensus 226 k~vG-~~~Vl~~vSGgv---------------dStV~a~Ll~~alg~~R~~ai~vdNG~m-----rk~Ea~~V~~tl~~l 284 (552)
T KOG1622|consen 226 KWVG-DYKVLVAVSGGV---------------DSTVCAALLRRALGPDRVHAIHVDNGFM-----RKKEAEQVEKTLVYL 284 (552)
T ss_pred HHhc-ccceEEEecCCc---------------hHHHHHHHHHHhhCCCceEEEEecccch-----hhhHHHHHHHHHHHc
Confidence 0000 12233 666643 3555666666778999999998885 32 233455566655558
Q ss_pred cccEEE
Q 045794 354 FVPLTV 359 (578)
Q Consensus 354 ~~pi~~ 359 (578)
++||++
T Consensus 285 gi~i~v 290 (552)
T KOG1622|consen 285 GIPITV 290 (552)
T ss_pred CCceEE
Confidence 888874
No 100
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.71 E-value=1.8e-16 Score=171.33 Aligned_cols=195 Identities=21% Similarity=0.255 Sum_probs=120.0
Q ss_pred CCCCcEEEEEECCC---CCHHHHHHHHHHCCC------eEEEeCCcc-------CCCCCCEEEECCCCCchHHHHHHHhh
Q 045794 44 TSSDSVVTLLDYGA---GNVRSVRNAIRHLGF------GIKDVQTPE-------DILNANRLIFPGVGAFAAAMDVLNKT 107 (578)
Q Consensus 44 ~~~~~~I~vld~~~---g~~~~i~~~L~~~Gv------~v~~v~~~~-------dl~~~DGlILpGGg~~~~~~~~l~~~ 107 (578)
+...++|+++.=.. ....++.++|+.+|+ .+.+++..+ .|.++|||++|||..... . .
T Consensus 286 ~~~~v~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~----~--~ 359 (525)
T TIGR00337 286 PKHEVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERG----V--E 359 (525)
T ss_pred CCCCcEEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChh----h--c
Confidence 34568899985221 244689999999996 223333321 156799999999863221 1 2
Q ss_pred cHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCC----------------CCCCcceeeeEE
Q 045794 108 GMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSS----------------NGFRVPQIGWNA 171 (578)
Q Consensus 108 ~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~----------------~~~~~~~~G~~~ 171 (578)
+....++.+.+.++|+||||+|||+|+.++..+ -+|+.++....|.+. .......+|.++
T Consensus 360 g~i~ai~~a~e~~iP~LGIClG~Qll~i~~grn----v~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~ 435 (525)
T TIGR00337 360 GKILAIKYARENNIPFLGICLGMQLAVIEFARN----VLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYP 435 (525)
T ss_pred ChHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHH----hcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceE
Confidence 455678888889999999999999999975321 011111111111110 001124568889
Q ss_pred EEEccCCcccccCCC--eEEEEEeeeeeec-----CCCCCCcEEEEeecCC-ceEEEEEe---CCEEEEeeCCcccCc--
Q 045794 172 LQITKDSEILDDVGD--HHVYFVHSYRAMP-----SDDNKEWVSSTCNYGD-NFIASVRR---GNVHAVQFHPEKSGD-- 238 (578)
Q Consensus 172 i~~~~~~~l~~~l~~--~~~~~~H~~~v~~-----~~~~~~~~~~~~~~~d-~~iegi~~---~~i~gvQFHPE~~~~-- 238 (578)
+.+.+++.+.+.+.. ...-+.|+|.+.+ ... ..+..+....| +.+|+++. .+++|||||||+.+.
T Consensus 436 v~i~~gS~L~~iyG~~~i~erhrHry~VNs~h~q~l~~--~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~ 513 (525)
T TIGR00337 436 CILKPGTLAFKLYGKEEVYERHRHRYEVNNEYREQLEN--KGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPN 513 (525)
T ss_pred EEECCCChHHHHhCCCceeecccceEEECHHHHHhhhh--CCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCC
Confidence 998888777665542 2223455555543 222 23444444445 68999993 346699999999643
Q ss_pred chHHHHHHHhhh
Q 045794 239 VGLSVLRRFLHP 250 (578)
Q Consensus 239 ~~~~l~~~Fl~~ 250 (578)
+...+|+.|+++
T Consensus 514 ~~~~LF~~FV~A 525 (525)
T TIGR00337 514 RPHPLFLGFVKA 525 (525)
T ss_pred chhHHHHHHHhC
Confidence 557899999863
No 101
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.71 E-value=3.5e-16 Score=154.58 Aligned_cols=186 Identities=24% Similarity=0.382 Sum_probs=120.8
Q ss_pred cEEEEEECCCCC-HHHHHHHHH-HCCCeEEEeCC-ccCCCCCCEEEECCCCCchHHHH---HHHhhcHHHHHHHHHhCCC
Q 045794 48 SVVTLLDYGAGN-VRSVRNAIR-HLGFGIKDVQT-PEDILNANRLIFPGVGAFAAAMD---VLNKTGMAEALCAYIEKDR 121 (578)
Q Consensus 48 ~~I~vld~~~g~-~~~i~~~L~-~~Gv~v~~v~~-~~dl~~~DGlILpGGg~~~~~~~---~l~~~~l~~~i~~~~~~g~ 121 (578)
++|+|+.++-.| -.++.++|+ ..|+++..+.. ..+++++|+|+||||.++..... ......+.++++++.++++
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~~~l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~ 80 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKETDLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGK 80 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCcCCCCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCC
Confidence 369999998555 466899999 89998877743 35788999999999865432211 1111246788889999999
Q ss_pred CEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCccee--eeEEEEEcc-CCcccccCC-Ce--EEEEEeee
Q 045794 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQI--GWNALQITK-DSEILDDVG-DH--HVYFVHSY 195 (578)
Q Consensus 122 PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~--G~~~i~~~~-~~~l~~~l~-~~--~~~~~H~~ 195 (578)
|++|||.|+|+|+. +|++++++.+ ....++ +|..+++.. ++++++.+. .. .+.-.|+.
T Consensus 81 ~ilgIC~G~qlLa~----------~GLL~g~l~~------n~~~~~~~~~v~v~i~~~~~~~~~~~~~g~~~~~~~aH~~ 144 (219)
T PRK03619 81 PVLGICNGFQILTE----------AGLLPGALTR------NASLKFICRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGE 144 (219)
T ss_pred EEEEECHHHHHHHH----------cCCCCCeEEE------cCCCcEEEEEEEEEECCCCChhhcCCCCCCEEEEEEEcCc
Confidence 99999999999999 4677888654 122344 566666654 467776663 22 22224443
Q ss_pred e---eecCC----CCCCcEEE-Ee-ecCCc---eEEEEE--eCCEEEEeeCCcccC------cchHHHHHHHhh
Q 045794 196 R---AMPSD----DNKEWVSS-TC-NYGDN---FIASVR--RGNVHAVQFHPEKSG------DVGLSVLRRFLH 249 (578)
Q Consensus 196 ~---v~~~~----~~~~~~~~-~~-~~~d~---~iegi~--~~~i~gvQFHPE~~~------~~~~~l~~~Fl~ 249 (578)
+ +.... ........ .. ...++ -+.++. +++++|+|||||+.. .++..||++|++
T Consensus 145 ~r~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i~~~~~~~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 145 GNYYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGIVNEKGNVLGMMPHPERAVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred ccEEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhcccCCCCCCEEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence 3 22100 01222222 22 11233 244554 459999999999962 478999999985
No 102
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.70 E-value=2.7e-16 Score=170.11 Aligned_cols=199 Identities=23% Similarity=0.308 Sum_probs=121.3
Q ss_pred CCCCcEEEEEECCC---CCHHHHHHHHHHCCC------eEEEeCCc--------cCCCCCCEEEECCCCCchHHHHHHHh
Q 045794 44 TSSDSVVTLLDYGA---GNVRSVRNAIRHLGF------GIKDVQTP--------EDILNANRLIFPGVGAFAAAMDVLNK 106 (578)
Q Consensus 44 ~~~~~~I~vld~~~---g~~~~i~~~L~~~Gv------~v~~v~~~--------~dl~~~DGlILpGGg~~~~~~~~l~~ 106 (578)
+....+|+++.=.. ....++.++|+.+|. ++.+++.. +.+.++|||++|||.... ...
T Consensus 285 ~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~----~~~- 359 (533)
T PRK05380 285 PKGEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGER----GIE- 359 (533)
T ss_pred CCCceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCcc----ccc-
Confidence 34567899985222 245678888888763 34455432 237889999999984221 111
Q ss_pred hcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecC------------CCC----CCcceeeeE
Q 045794 107 TGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDS------------SNG----FRVPQIGWN 170 (578)
Q Consensus 107 ~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~------------~~~----~~~~~~G~~ 170 (578)
+....++.+.+.++|+||||+|||+|+.++... . +|+.++....|++ ... .....+|.+
T Consensus 360 -g~i~~i~~a~e~~iPiLGIClGmQll~va~Ggn--v--~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h 434 (533)
T PRK05380 360 -GKILAIRYARENNIPFLGICLGMQLAVIEFARN--V--LGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAY 434 (533)
T ss_pred -cHHHHHHHHHHCCCcEEEEchHHHHHHHHhccc--c--cCcccCcccccCCCCCCCeEeeccccccccccCCcccccce
Confidence 456788888899999999999999999974211 0 1122221111111 000 012245678
Q ss_pred EEEEccCCcccccCCCeEEE--EEeeeee-----ecCCCCCCcEEEEeecCC-ceEEEEEe---CCEEEEeeCCcccCc-
Q 045794 171 ALQITKDSEILDDVGDHHVY--FVHSYRA-----MPSDDNKEWVSSTCNYGD-NFIASVRR---GNVHAVQFHPEKSGD- 238 (578)
Q Consensus 171 ~i~~~~~~~l~~~l~~~~~~--~~H~~~v-----~~~~~~~~~~~~~~~~~d-~~iegi~~---~~i~gvQFHPE~~~~- 238 (578)
++.+.+++.+.+.+....+. +.|.|.+ +..... .+..+..+.+ +.+|+++. .+++|+|||||+.+.
T Consensus 435 ~v~i~~gS~l~~iyg~~~i~ErhrHryeVNs~h~qal~~~--GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p 512 (533)
T PRK05380 435 PCKLKPGTLAAEIYGKEEIYERHRHRYEVNNKYREQLEKA--GLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRP 512 (533)
T ss_pred eEEECCCChHHHHhCCCceeeecccceecCHHHHHHHhhc--CeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCC
Confidence 88888887766555432222 2333333 333222 2344444434 58999983 356799999999653
Q ss_pred -chHHHHHHHhhhccCC
Q 045794 239 -VGLSVLRRFLHPKTNI 254 (578)
Q Consensus 239 -~~~~l~~~Fl~~~~~~ 254 (578)
+...+|+.|++++...
T Consensus 513 ~~~~pLF~~FV~Aa~~~ 529 (533)
T PRK05380 513 RRPHPLFAGFVKAALEN 529 (533)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 5678999999988653
No 103
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.69 E-value=1.2e-16 Score=162.79 Aligned_cols=182 Identities=19% Similarity=0.202 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHCCCeEEEeCCc---cC----CCCCCEEEECCCCCchHHHHHHH-hhcHHHHHHHHHhCC--CCEEEEec
Q 045794 59 NVRSVRNAIRHLGFGIKDVQTP---ED----ILNANRLIFPGVGAFAAAMDVLN-KTGMAEALCAYIEKD--RPFLGICL 128 (578)
Q Consensus 59 ~~~~i~~~L~~~Gv~v~~v~~~---~d----l~~~DGlILpGGg~~~~~~~~l~-~~~l~~~i~~~~~~g--~PIlGICl 128 (578)
...+++++++++|++|..+..+ ++ +..+|||++|||+.......+.+ ...+.+.+.+..++| +|+||||+
T Consensus 21 i~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiCl 100 (273)
T cd01747 21 IAASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCL 100 (273)
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcH
Confidence 3346899999999987665433 22 67899999999863332222332 112333333333333 89999999
Q ss_pred hHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEcc---CCcccccCC---------CeEEEEEeeee
Q 045794 129 GLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK---DSEILDDVG---------DHHVYFVHSYR 196 (578)
Q Consensus 129 G~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~---~~~l~~~l~---------~~~~~~~H~~~ 196 (578)
|||+|+.++ | +++..... ...+-...++.++. .+++|+.++ ...++++|+++
T Consensus 101 G~QlL~~~~-------g-----g~~~~~~~----~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~ 164 (273)
T cd01747 101 GFELLTYLT-------S-----GETLLLEA----TEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYG 164 (273)
T ss_pred HHHHHHHHh-------C-----CCccccCC----CccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccc
Confidence 999999953 2 11110000 00112235565554 356776664 24678999998
Q ss_pred eecCCCC------CC-cEEEEeec--CCceEEEEEeC--CEEEEeeCCcccCc----------------chHHHHHHHhh
Q 045794 197 AMPSDDN------KE-WVSSTCNY--GDNFIASVRRG--NVHAVQFHPEKSGD----------------VGLSVLRRFLH 249 (578)
Q Consensus 197 v~~~~~~------~~-~~~~~~~~--~d~~iegi~~~--~i~gvQFHPE~~~~----------------~~~~l~~~Fl~ 249 (578)
+.+.... .. .+.++... +..++++++++ |+||+|||||+..- .+..+-+.|++
T Consensus 165 v~~~~~~~~~~l~~~~~vla~~~d~~g~~fis~ie~~~~pi~gvQFHPEks~few~~~~~~~hs~~ai~~~q~~a~ffv~ 244 (273)
T cd01747 165 ISPENFTENGLLSDFFNVLTTNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHSEEAIRLTQYFANFFVN 244 (273)
T ss_pred cCHhhcccccccccceEEEEEEecCCCceEEEEEEecCCceEEEecCCCcccccccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 8532211 11 22233333 44678899865 99999999997421 23456677778
Q ss_pred hccCCCC
Q 045794 250 PKTNIPK 256 (578)
Q Consensus 250 ~~~~~~~ 256 (578)
.++.+..
T Consensus 245 e~r~n~~ 251 (273)
T cd01747 245 EARKSNN 251 (273)
T ss_pred HHhcCCC
Confidence 8887755
No 104
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.68 E-value=9e-16 Score=152.86 Aligned_cols=157 Identities=23% Similarity=0.310 Sum_probs=94.6
Q ss_pred CCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCC--
Q 045794 82 DILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSS-- 159 (578)
Q Consensus 82 dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~-- 159 (578)
.+.++||||+|||..... .. +....++++.+.++|+||||+|||+|+.++... . .++.......+.+.
T Consensus 52 ~l~~~dgivl~GG~~~~~----~~--~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~--~--~~~~~~~~~~~~~~~~ 121 (235)
T cd01746 52 ALKGADGILVPGGFGIRG----VE--GKILAIKYARENNIPFLGICLGMQLAVIEFARN--V--LGLPDANSTEFDPDTP 121 (235)
T ss_pred hhccCCEEEECCCCCCcc----hh--hHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHH--h--cCCccCCccccCCCCC
Confidence 367899999999864322 11 345678888889999999999999999874211 0 00000000000000
Q ss_pred --------------CCCCcceeeeEEEEEccCCcccccCC--CeEEEEEeeeeeec--CCC-CCCcEEEEeecC-CceEE
Q 045794 160 --------------NGFRVPQIGWNALQITKDSEILDDVG--DHHVYFVHSYRAMP--SDD-NKEWVSSTCNYG-DNFIA 219 (578)
Q Consensus 160 --------------~~~~~~~~G~~~i~~~~~~~l~~~l~--~~~~~~~H~~~v~~--~~~-~~~~~~~~~~~~-d~~ie 219 (578)
+.....+++.+.+.+.+++.+.+.++ ...+..+|++.+.+ ... ....+..+.... ++++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~rl~~h~v~i~~~s~l~~~~g~~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ie 201 (235)
T cd01746 122 HPVVDLMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYYGKDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVE 201 (235)
T ss_pred CCEEEECcccccccccCcccccCceEEEECCCChHHHHhCCCEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEE
Confidence 00011234678888888888766555 24555667766532 111 122233343344 79999
Q ss_pred EEEe--CC-EEEEeeCCcccCc--chHHHHHHHh
Q 045794 220 SVRR--GN-VHAVQFHPEKSGD--VGLSVLRRFL 248 (578)
Q Consensus 220 gi~~--~~-i~gvQFHPE~~~~--~~~~l~~~Fl 248 (578)
+++. .+ ++|+|||||.... +...+|+.|+
T Consensus 202 aie~~~~pf~lgvQ~HPE~~~~~~~~~~lF~~fv 235 (235)
T cd01746 202 IVELPDHPFFVGTQFHPEFKSRPLKPHPLFVGFV 235 (235)
T ss_pred EEEcCCCCcEEEEECCCCCcCCCCCccHHHHHhC
Confidence 9994 35 4599999998543 4568999885
No 105
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.66 E-value=3.6e-15 Score=162.53 Aligned_cols=199 Identities=16% Similarity=0.162 Sum_probs=138.4
Q ss_pred CcEEEEEECCCCCH--HHHHHHHHHCCCeEEEeCCc--cCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 47 DSVVTLLDYGAGNV--RSVRNAIRHLGFGIKDVQTP--EDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 47 ~~~I~vld~~~g~~--~~i~~~L~~~Gv~v~~v~~~--~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
+.+|+|.-...-++ ..-++.|+++|+++.++++. ++++++|+|+||||.+...........++.+.|++++++|+|
T Consensus 244 ~~~Iava~d~afnFy~~~~~~~L~~~g~~~~~~~~~~d~~l~~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~p 323 (449)
T TIGR00379 244 YVRIAVAQDQAFNFYYQDNLDALTHNAAELVPFSPLEDTELPDVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLP 323 (449)
T ss_pred CcEEEEEechhhceeHHHHHHHHHHCCCEEEEECCccCCCCCCCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCC
Confidence 46899875443233 34567899999999999884 568899999999997544444444456789999999999999
Q ss_pred EEEEechHHHHhhhccc-CCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCC
Q 045794 123 FLGICLGLQLLFQSSEE-NGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSD 201 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e-~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~ 201 (578)
|||||.|+|+|++.+.+ .+...|+|++|..+.. . .+...+||...+...+..+......+++|++|+......+
T Consensus 324 v~g~CgG~~~L~~~i~~~~g~~~~~Gllp~~t~~-~----~~~~~~gy~~~~~~~~~~~~~~g~~~~GhEfH~~~~~~~~ 398 (449)
T TIGR00379 324 IYGECGGLMYLSQSLDNFEGQIFMVGMLPTAATM-T----GRVQGLGYVQAEVVNDCLILWQGEKFRGHEFHYSRMTKLP 398 (449)
T ss_pred EEEEcHHHHHHHhhhcCCCCceeceeeeeeEEEE-c----CCcccccceEEEEecCccccCCCCEEEEEecCCccCcCCC
Confidence 99999999999999854 2334899999999864 2 2233578877766555544432235789999987654222
Q ss_pred CCCCcEEEEeecC-CceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 202 DNKEWVSSTCNYG-DNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 202 ~~~~~~~~~~~~~-d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
............+ ++.-+|+..++++|++.|-.+.+ ...+.++|++.++
T Consensus 399 ~~~~~~~~~~g~g~~~~~dG~~~~nv~gsY~H~~~~~--np~~~~~~l~~~~ 448 (449)
T TIGR00379 399 NAQFAYRVERGRGIIDQLDGICVGSVLASYLHLHAGS--VPKFAAAFVAFAK 448 (449)
T ss_pred CcceEEEeccCCCCCCceeEEEeCCEEEEeeeeeCCc--CHHHHHHHHHHhh
Confidence 1111121111111 11227888899999999988744 3468899988764
No 106
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.64 E-value=9.8e-15 Score=156.86 Aligned_cols=189 Identities=17% Similarity=0.181 Sum_probs=135.0
Q ss_pred cEEEEE-E--CCCCCHHHHHHHHHHCCCeEEEeCC--ccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 48 SVVTLL-D--YGAGNVRSVRNAIRHLGFGIKDVQT--PEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 48 ~~I~vl-d--~~~g~~~~i~~~L~~~Gv~v~~v~~--~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
++|+|- | | +-+...-++.|+++ +++.++++ ++.++++|+|+||||.+...+ .++...+..+.|++++++|+|
T Consensus 234 ~~iavA~D~AF-~FyY~enl~~L~~~-aelv~fSPl~~~~lp~~D~l~lpGG~~e~~~-~~L~~n~~~~~i~~~~~~G~p 310 (433)
T PRK13896 234 PTVAVARDAAF-CFRYPATIERLRER-ADVVTFSPVAGDPLPDCDGVYLPGGYPELHA-DALADSPALDELADRAADGLP 310 (433)
T ss_pred CeEEEEEcCcc-ceeCHHHHHHHHhc-CcEEEEcCCCCCCCCCCCEEEeCCCchhhHH-HHHHhCCcHHHHHHHHHCCCc
Confidence 678885 2 2 12233446899999 99999988 455889999999999755444 566655566999999999999
Q ss_pred EEEEechHHHHhhhccc--CCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecC
Q 045794 123 FLGICLGLQLLFQSSEE--NGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPS 200 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e--~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~ 200 (578)
|+|||.|+|+|++.+.+ +..++|+|++|+.+.. . .+...+|+..++...++++......+++|++|+.... .
T Consensus 311 i~aeCGG~q~L~~~i~d~eG~~~~m~Gllp~~t~m-~----~r~~~lGy~~~~~~~~~~~~~~G~~i~GhEfHys~~~-~ 384 (433)
T PRK13896 311 VLGECGGLMALAESLTTTDGDTHEMAGVLPADVTM-Q----DRYQALDHVELRATDDTLTAGAGETLRGHEFHYSSAT-V 384 (433)
T ss_pred EEEEehHHHHhhccccCCCCCEecccceeeEEEEE-c----cceeEEEeEEEEEccCccccCCCCeEEEEeeeCeEEE-C
Confidence 99999999999999863 4567999999999865 2 2235789888877666555432235899999988765 2
Q ss_pred CCCCCcEEEEeecCCc---eEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhh
Q 045794 201 DDNKEWVSSTCNYGDN---FIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHP 250 (578)
Q Consensus 201 ~~~~~~~~~~~~~~d~---~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~ 250 (578)
+....+.... ..+.+ ..+|+..++++|++.|-.+.+. ++++|++.
T Consensus 385 ~~~~~~~~~~-~~g~g~~~~~dG~~~~nv~asY~H~hf~~~----~~~~f~~~ 432 (433)
T PRK13896 385 GSDARFAFDV-ERGDGIDGEHDGLTEYRTLGTYAHVHPESG----AFDRFLEA 432 (433)
T ss_pred CCCCceEEEe-ccCCCCCCcccEEEECCEEEEehhhcCCch----HHHHHHhh
Confidence 2221222211 11211 1268888999999999998552 88888764
No 107
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.64 E-value=1.1e-14 Score=158.84 Aligned_cols=198 Identities=19% Similarity=0.165 Sum_probs=137.5
Q ss_pred CcEEEEEECCCCC--HHHHHHHHHHCCCeEEEeCCc--cCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 47 DSVVTLLDYGAGN--VRSVRNAIRHLGFGIKDVQTP--EDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 47 ~~~I~vld~~~g~--~~~i~~~L~~~Gv~v~~v~~~--~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
+.+|+|.-....+ +.+-.+.|++.|+++.++++. +++.++|+||||||.....+........+.+.|+++.++++|
T Consensus 245 ~~~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~~~~~l~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~ 324 (451)
T PRK01077 245 GVRIAVARDAAFNFYYPENLELLRAAGAELVFFSPLADEALPDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKP 324 (451)
T ss_pred CceEEEEecCcccccHHHHHHHHHHCCCEEEEeCCcCCCCCCCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCC
Confidence 4679998655333 334568899999999999873 558899999999997544444455555788999999999999
Q ss_pred EEEEechHHHHhhhccc--CCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecC
Q 045794 123 FLGICLGLQLLFQSSEE--NGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPS 200 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e--~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~ 200 (578)
|+|||.|+|+|+..+.+ +..+.|+|++|..+.. .. +...+|+.......+..+...-..+.+|++|+......
T Consensus 325 i~aiCgG~~~L~~~i~d~~g~~~~~lGll~~~t~~-~~----~~~~~g~~~~~~~~~~~~~~~g~~i~G~E~H~g~~~~~ 399 (451)
T PRK01077 325 IYAECGGLMYLGESLEDADGERHPMVGLLPGEASM-TK----RLQALGYREAEALEDTLLGKAGERLRGHEFHYSTLETP 399 (451)
T ss_pred EEEEcHHHHHHHhhhcCCCCCeeecccccceeEEE-cC----CcccccceEEEeecCCcCCCCCCEEEEECCCceEeeCC
Confidence 99999999999999864 2356899999998764 22 22256776666544444332223578999998876422
Q ss_pred CCCCCcEEEEeecCCc-eEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 201 DDNKEWVSSTCNYGDN-FIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 201 ~~~~~~~~~~~~~~d~-~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
+. .+........+++ ..+|+..++++|++.|..+.+ ...+.++|++.++
T Consensus 400 ~~-~~~~~~~~~~g~~~~~dG~~~~nv~gtY~H~~f~~--n~~~~~~~l~~~~ 449 (451)
T PRK01077 400 EE-APLYRVRDADGRPLGEEGYRRGNVLASYLHLHFAS--NPDAAARFLAACR 449 (451)
T ss_pred CC-CccEEEEeCCCCCCcCCeEEeCCEEEEEeEeeccc--CHHHHHHHHHHHh
Confidence 21 2222222212221 126777889999999998853 3468899988764
No 108
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.63 E-value=2.9e-15 Score=157.41 Aligned_cols=200 Identities=21% Similarity=0.295 Sum_probs=121.7
Q ss_pred CCCCcEEEEEECCC---CCHHHHHHHHHHCC------CeEEEeCCcc-------CCCC-CCEEEECCCCCchHHHHHHHh
Q 045794 44 TSSDSVVTLLDYGA---GNVRSVRNAIRHLG------FGIKDVQTPE-------DILN-ANRLIFPGVGAFAAAMDVLNK 106 (578)
Q Consensus 44 ~~~~~~I~vld~~~---g~~~~i~~~L~~~G------v~v~~v~~~~-------dl~~-~DGlILpGGg~~~~~~~~l~~ 106 (578)
+....+|+++.=.. ....++..+|..+| +++.+++..+ .+.. +|||++|||-.. ...+
T Consensus 285 ~~~~v~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~----RG~e- 359 (533)
T COG0504 285 PKKEVTIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGY----RGVE- 359 (533)
T ss_pred CCCceEEEEEECCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCCc----CchH-
Confidence 44447799985222 24557788888887 3455665431 1333 999999998321 1122
Q ss_pred hcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCC----------------CCCCcceeeeE
Q 045794 107 TGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSS----------------NGFRVPQIGWN 170 (578)
Q Consensus 107 ~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~----------------~~~~~~~~G~~ 170 (578)
+....++.+.++++|+||||+|||+....++.+ -+|+-++..+.|++. +......+|.+
T Consensus 360 -GkI~Ai~yAREn~iP~lGIClGmQ~aviE~ARn----v~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y 434 (533)
T COG0504 360 -GKIAAIRYARENNIPFLGICLGMQLAVIEFARN----VLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAY 434 (533)
T ss_pred -HHHHHHHHHHhcCCCEEEEchhHHHHHHHHHHH----hcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccce
Confidence 556788999999999999999999998864321 122222222222211 00112455777
Q ss_pred EEEEccCCcccccCCCeEEEEEeeeeeecCC------CCCCcEEEEeecC-CceEEEEE---eCCEEEEeeCCcccCc--
Q 045794 171 ALQITKDSEILDDVGDHHVYFVHSYRAMPSD------DNKEWVSSTCNYG-DNFIASVR---RGNVHAVQFHPEKSGD-- 238 (578)
Q Consensus 171 ~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~------~~~~~~~~~~~~~-d~~iegi~---~~~i~gvQFHPE~~~~-- 238 (578)
+..+.+++...+-+....+++-|..+....+ ....+ ..+.... ...+|.++ +.+++|+|||||+.+.
T Consensus 435 ~~~l~~gT~a~~lY~~~~v~ERHRHRYEvN~~y~~~le~~Gl-~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~ 513 (533)
T COG0504 435 PCRLKPGTLAAKLYGKDEIYERHRHRYEVNNDYRDQLEKAGL-VFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPL 513 (533)
T ss_pred eeecCCCcHHHHHhCCCeeeeeccchhhcCHHHHHHHHhCCe-EEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCC
Confidence 7777777665554443445554444433222 12233 3343333 36788888 4689999999999764
Q ss_pred chHHHHHHHhhhccCC
Q 045794 239 VGLSVLRRFLHPKTNI 254 (578)
Q Consensus 239 ~~~~l~~~Fl~~~~~~ 254 (578)
....+|..|++++...
T Consensus 514 ~phPlf~~fv~Aa~~~ 529 (533)
T COG0504 514 RPHPLFVGFVKAALEY 529 (533)
T ss_pred CCCccHHHHHHHHHHh
Confidence 5578999999887543
No 109
>PLN02327 CTP synthase
Probab=99.62 E-value=3.1e-15 Score=162.11 Aligned_cols=201 Identities=20% Similarity=0.209 Sum_probs=115.6
Q ss_pred CCCCcEEEEEE-CC--CCCHHHHHHHHHHCC------CeEEEeCCc------------------cCCCCCCEEEECCCCC
Q 045794 44 TSSDSVVTLLD-YG--AGNVRSVRNAIRHLG------FGIKDVQTP------------------EDILNANRLIFPGVGA 96 (578)
Q Consensus 44 ~~~~~~I~vld-~~--~g~~~~i~~~L~~~G------v~v~~v~~~------------------~dl~~~DGlILpGGg~ 96 (578)
+....+|+++. |- .....++..+|..+| +++.+++.. +.+.++|||++|||..
T Consensus 294 ~~~~v~IalVGKY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG 373 (557)
T PLN02327 294 LTEPVRIAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFG 373 (557)
T ss_pred CCCceEEEEEecccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCC
Confidence 34457799984 21 124557777887766 345555431 2367899999999842
Q ss_pred chHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCC--------------
Q 045794 97 FAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGF-------------- 162 (578)
Q Consensus 97 ~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~-------------- 162 (578)
.. .. .+....++.+.+.++|+||||+|||+++..+..+ -+|+-++..+.|.++...
T Consensus 374 ~~----~~--~G~i~ai~~are~~iP~LGIClGmQl~viefaRn----vlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~ 443 (557)
T PLN02327 374 DR----GV--EGKILAAKYARENKVPYLGICLGMQIAVIEFARS----VLGLKDANSTEFDPETPNPCVIFMPEGSKTHM 443 (557)
T ss_pred Cc----cc--ccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHh----hcCCcCCCccccCCCCCCCEEEEehhcccccC
Confidence 11 11 1445667888889999999999999999975322 123333333323221000
Q ss_pred -CcceeeeEEEEEc-cCCcccccCC-C--eEEEEEeeeeeecC--CCC-CCcEEEEeecCC-ceEEEEEe--CC-EEEEe
Q 045794 163 -RVPQIGWNALQIT-KDSEILDDVG-D--HHVYFVHSYRAMPS--DDN-KEWVSSTCNYGD-NFIASVRR--GN-VHAVQ 230 (578)
Q Consensus 163 -~~~~~G~~~i~~~-~~~~l~~~l~-~--~~~~~~H~~~v~~~--~~~-~~~~~~~~~~~d-~~iegi~~--~~-i~gvQ 230 (578)
....+|-+...+. +++.+.+.+. . +...+.|+|.+.+. +.. ...+..+....+ +.+|+++. .+ ++|+|
T Consensus 444 GGtMRLG~~~~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQ 523 (557)
T PLN02327 444 GGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQ 523 (557)
T ss_pred CceEECCCcccccCCCCCHHHHHhCCccceeeeeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEE
Confidence 0122343333443 4444433333 1 33455666666432 111 122334444444 47999983 34 55999
Q ss_pred eCCcccCc--chHHHHHHHhhhccCC
Q 045794 231 FHPEKSGD--VGLSVLRRFLHPKTNI 254 (578)
Q Consensus 231 FHPE~~~~--~~~~l~~~Fl~~~~~~ 254 (578)
||||+.+. +...+|..|++.+...
T Consensus 524 fHPE~~s~p~~~~pLF~~Fv~Aa~~~ 549 (557)
T PLN02327 524 FHPEFKSRPGKPSPLFLGLIAAASGQ 549 (557)
T ss_pred cCCCCCCCCCCchHHHHHHHHHHHHh
Confidence 99999643 4578999999987653
No 110
>PRK00784 cobyric acid synthase; Provisional
Probab=99.62 E-value=1.7e-14 Score=158.97 Aligned_cols=189 Identities=20% Similarity=0.228 Sum_probs=137.0
Q ss_pred CcEEEEEECC-CCCHHHHHHHHHH-CCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEE
Q 045794 47 DSVVTLLDYG-AGNVRSVRNAIRH-LGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFL 124 (578)
Q Consensus 47 ~~~I~vld~~-~g~~~~i~~~L~~-~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIl 124 (578)
+.+|+|+.|+ ..++.++ +.|++ .|++++++++.++++++|+|+||||++...++.+.+..++.+.|++++++++|+|
T Consensus 251 ~~~i~v~~~~~a~~f~nl-~~l~~~~g~~v~~~s~~~~l~~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pil 329 (488)
T PRK00784 251 ALRIAVIRLPRISNFTDF-DPLRAEPGVDVRYVRPGEPLPDADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVL 329 (488)
T ss_pred ceEEEEEeCCCcCCccCh-HHHhhcCCCeEEEECCccccccCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEE
Confidence 4689999877 4455554 67776 9999999999888999999999999977777777777789999999999999999
Q ss_pred EEechHHHHhhhcc--cCCC-----cCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeee
Q 045794 125 GICLGLQLLFQSSE--ENGP-----VNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRA 197 (578)
Q Consensus 125 GIClG~QlLa~a~~--e~~~-----~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v 197 (578)
|||+|||+|+..+. ++.. ..|+|++|+++.. .. ...+|+....+... ...+.+|++|+...
T Consensus 330 g~C~G~~~L~~~~~~~~G~~~~~~~~~glG~l~~~~~~-~~-----~~~~g~~~~~~~~~------g~~~~GhEfH~s~~ 397 (488)
T PRK00784 330 GICGGYQMLGRRIADPDGVEGAPGSVEGLGLLDVETVF-EP-----EKTLRQVTGLLLGS------GAPVSGYEIHMGRT 397 (488)
T ss_pred EECHHHHHHhhhccCCCCcccCCCCcCCCCceeeEEEe-cC-----ceEEccEEEEEcCC------CceEEEEEecCcEe
Confidence 99999999999875 2222 3899999999864 21 12556555432111 12468899998765
Q ss_pred ecCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCcchHHHHHHHhhhccCCC
Q 045794 198 MPSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIP 255 (578)
Q Consensus 198 ~~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~~ 255 (578)
...+...+...... + + .+|+.. ++++|++.|--+.+ ..+.++|++.++...
T Consensus 398 ~~~~~~~~~~~~~~--g-~-~~G~~~~~~nv~atY~H~~~~n---p~~~~~~l~~~~~~~ 450 (488)
T PRK00784 398 TGPALARPFLRLDD--G-R-PDGAVSADGRVFGTYLHGLFDN---DAFRRALLNWLGARK 450 (488)
T ss_pred eCCCCCcCcEEecC--C-C-cCceEecCCCEEEEeeeeccCC---HHHHHHHHHHHHHhc
Confidence 42111112222221 2 1 267777 89999999987743 578999998887543
No 111
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=9.7e-15 Score=153.08 Aligned_cols=181 Identities=20% Similarity=0.257 Sum_probs=113.7
Q ss_pred CCcEEEEEECCCCCHHHHHHHHHHC-CCeEE-EeCCc-------cCC---CCCCEEEE-CCCCCc--hHHHHHHHhhcHH
Q 045794 46 SDSVVTLLDYGAGNVRSVRNAIRHL-GFGIK-DVQTP-------EDI---LNANRLIF-PGVGAF--AAAMDVLNKTGMA 110 (578)
Q Consensus 46 ~~~~I~vld~~~g~~~~i~~~L~~~-Gv~v~-~v~~~-------~dl---~~~DGlIL-pGGg~~--~~~~~~l~~~~l~ 110 (578)
.+.+++++|..+++..|+.+.|... |+..+ ++.+. +++ .-+|+|++ ||+|++ ..++.-+ .
T Consensus 13 ~rl~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~-----~ 87 (767)
T KOG1224|consen 13 PRLRTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGIC-----L 87 (767)
T ss_pred hheeEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHHH-----H
Confidence 4678999998889999999999875 44333 23221 223 34999998 776765 2222111 1
Q ss_pred HHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeE-EEEEccCCcccccCC----
Q 045794 111 EALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWN-ALQITKDSEILDDVG---- 185 (578)
Q Consensus 111 ~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~-~i~~~~~~~l~~~l~---- 185 (578)
+++.+ .+++||+|||+|||.|+.+ .| +.+.+ .+.|..|.. .++ +.+..+|.+++
T Consensus 88 rl~~~--~~~iPilGICLGfQal~l~-------hG-----A~v~~------~n~p~HGrvs~i~-~~~~~~f~gi~sg~~ 146 (767)
T KOG1224|consen 88 RLLLE--CRDIPILGICLGFQALGLV-------HG-----AHVVH------ANEPVHGRVSGIE-HDGNILFSGIPSGRN 146 (767)
T ss_pred HHHHh--cCCCceeeeehhhHhHhhh-------cc-----cceec------CCCcccceeeeEE-ecCcEEEccCCCCCc
Confidence 22222 2479999999999999983 45 33332 223333432 222 23334444444
Q ss_pred -CeEEEEEeeeeeecCCCCCCcEEEEeecCCc-eEEEEEe--CCEEEEeeCCcccC-cchHHHHHHHhhhcc
Q 045794 186 -DHHVYFVHSYRAMPSDDNKEWVSSTCNYGDN-FIASVRR--GNVHAVQFHPEKSG-DVGLSVLRRFLHPKT 252 (578)
Q Consensus 186 -~~~~~~~H~~~v~~~~~~~~~~~~~~~~~d~-~iegi~~--~~i~gvQFHPE~~~-~~~~~l~~~Fl~~~~ 252 (578)
.+++..+|+.++.+.+...-..+.+....++ ..+++.+ .|.||+|||||... ..+..||+||++..-
T Consensus 147 ~~fK~~RYHSL~in~~pid~l~il~t~~ddng~ilMsi~~~~fPhfG~qyHPES~~s~~g~~lfkNFl~lt~ 218 (767)
T KOG1224|consen 147 SDFKVVRYHSLIINSLPIDLLPILWTIYDDNGHILMSIMHSSFPHFGLQYHPESIASTYGSQLFKNFLDLTV 218 (767)
T ss_pred ccceeEEeEEEEecCCchhhhcceeEeecCCceEEEEeeccCCCccceeeChHHhhhhhhHHHHHHHHHhhc
Confidence 6899999999998766533222333333333 4566663 58999999999854 478899999987644
No 112
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.58 E-value=5.2e-15 Score=138.53 Aligned_cols=157 Identities=17% Similarity=0.278 Sum_probs=109.5
Q ss_pred CHHHHHHHHHHCCCeEEEe-------CCccCCCCCCEEEECCCC-CchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechH
Q 045794 59 NVRSVRNAIRHLGFGIKDV-------QTPEDILNANRLIFPGVG-AFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGL 130 (578)
Q Consensus 59 ~~~~i~~~L~~~Gv~v~~v-------~~~~dl~~~DGlILpGGg-~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~ 130 (578)
+..-++..|.+-|.++..+ |..+||++|||++|+|+. +...+.+|+. .++..+++.....+||+|||+||
T Consensus 26 y~nvfvsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~dAf~d~dWI~--KLcs~~kkld~mkkkvlGICFGH 103 (245)
T KOG3179|consen 26 YFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKHDAFSDADWIK--KLCSFVKKLDFMKKKVLGICFGH 103 (245)
T ss_pred HHHHHHHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcccccccchHHH--HHHHHHHHHHhhccceEEEeccH
Confidence 4444667788888765433 334679999999999984 3333567876 67888888888889999999999
Q ss_pred HHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEcc----CCcccccCC-CeEEEEEeeeeeecCCCCCC
Q 045794 131 QLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK----DSEILDDVG-DHHVYFVHSYRAMPSDDNKE 205 (578)
Q Consensus 131 QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~----~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~ 205 (578)
|++|.+ .| +++.+ ..+.|.++...+++.. ...+|..++ .....+.|++.+...|....
T Consensus 104 Qiiara-------~G-----g~Vgr-----a~KG~~~~lg~itivk~~~~~~~yFG~~~~~l~IikcHqDevle~PE~a~ 166 (245)
T KOG3179|consen 104 QIIARA-------KG-----GKVGR-----APKGPDLGLGSITIVKDAEKPEKYFGEIPKSLNIIKCHQDEVLELPEGAE 166 (245)
T ss_pred HHHHHh-------hC-----Ccccc-----CCCCCcccccceEEEEecccchhhcccchhhhhHHhhcccceecCCchhh
Confidence 999994 33 45443 2334455444444332 234555444 45667899999988888766
Q ss_pred cEEEEeecCCceEEEEE-eCCEEEEeeCCcccC
Q 045794 206 WVSSTCNYGDNFIASVR-RGNVHAVQFHPEKSG 237 (578)
Q Consensus 206 ~~~~~~~~~d~~iegi~-~~~i~gvQFHPE~~~ 237 (578)
.+..+..++ +|++. .++++++|-|||+..
T Consensus 167 llasSe~ce---ve~fs~~~~~l~fQGHPEyn~ 196 (245)
T KOG3179|consen 167 LLASSEKCE---VEMFSIEDHLLCFQGHPEYNK 196 (245)
T ss_pred hhccccccc---eEEEEecceEEEecCCchhhH
Confidence 666666664 56676 568999999999964
No 113
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=2.9e-14 Score=134.33 Aligned_cols=190 Identities=20% Similarity=0.198 Sum_probs=141.5
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
..+|+.-.+-||-.|-+ + -.+-|+.+++.+++|| +|-=-|+++|.++||||+++++++|.++||+
T Consensus 36 ~~mA~Aa~~gGAvgiR~---~-----------gv~dIkai~~~v~vPI-IGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~ 100 (229)
T COG3010 36 AAMALAAEQGGAVGIRI---E-----------GVEDIKAIRAVVDVPI-IGIIKRDYPDSPVRITPTLKEVDALAEAGAD 100 (229)
T ss_pred HHHHHHHHhCCcceEee---c-----------chhhHHHHHhhCCCCe-EEEEecCCCCCCceecccHHHHHHHHHCCCc
Confidence 34666666678764421 1 1456778888899999 6666789999999999999999999999999
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTV 469 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (578)
.|++......+|...++ +++++ .+|..+-+|.
T Consensus 101 IIA~DaT~R~RP~~~~~-------~~i~~--~k~~~~l~MA--------------------------------------- 132 (229)
T COG3010 101 IIAFDATDRPRPDGDLE-------ELIAR--IKYPGQLAMA--------------------------------------- 132 (229)
T ss_pred EEEeecccCCCCcchHH-------HHHHH--hhcCCcEEEe---------------------------------------
Confidence 99998888886531221 44444 3454443333
Q ss_pred cccccCCCCCHHHHHHHHHHcCCcEEEEe--ccCC-CCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 045794 470 NGGREGRPIGAYELAKAVEDLGAGEILLN--CIDC-DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNA 546 (578)
Q Consensus 470 ~g~~~~~~~~~~e~~~~~~~~G~~~ii~t--di~~-dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~ 546 (578)
+++.+|-...+.++|++-|=-| ..+. .-+-.+||+++++++.+ .+++|||.|.+.+++..+++++ .|+
T Consensus 133 -------D~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~-~Ga 203 (229)
T COG3010 133 -------DCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIE-IGA 203 (229)
T ss_pred -------ccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHH-hCC
Confidence 3445677788889999866522 2222 22567899999999988 6999999999999999999996 999
Q ss_pred hHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 547 SAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 547 ~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
++|.||+|+.+.+..-+.+.+.+++
T Consensus 204 ~aVvVGsAITRp~~It~~F~~~ik~ 228 (229)
T COG3010 204 DAVVVGSAITRPEEITQWFVDAIKS 228 (229)
T ss_pred eEEEECcccCCHHHHHHHHHHHHhc
Confidence 9999999998766555555555543
No 114
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=99.55 E-value=1.4e-13 Score=129.25 Aligned_cols=145 Identities=21% Similarity=0.239 Sum_probs=103.8
Q ss_pred cCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcc-----cCC--CcCCCcccCcee
Q 045794 81 EDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSE-----ENG--PVNGLGLIPGVV 153 (578)
Q Consensus 81 ~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~-----e~~--~~~Glgl~~~~v 153 (578)
+.+.++|+|+||||.....+..+.+..++.+.|+++++.++||+|||.|+|+|++.+. +.+ ...|+|++|..+
T Consensus 3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~d~~e~~~~g~~~~glGllp~~t 82 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESIIDGVEGDADGKRYPGLGLLPIDT 82 (158)
T ss_pred CCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHhhccccCCCCcceeeeceeeeEE
Confidence 4578999999999987666776766678999999999999999999999999999986 322 478999999998
Q ss_pred eeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcEEEEeecCCceEEEE-EeCCEEEEeeC
Q 045794 154 GRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASV-RRGNVHAVQFH 232 (578)
Q Consensus 154 ~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~~~~~~~~d~~iegi-~~~~i~gvQFH 232 (578)
.. .+...+++....... ...-..+.+|++|.......+........ +..++.-..+ ..++++|++.|
T Consensus 83 ~~------~~~~~~g~~~~~~~~----~~~g~~v~G~E~H~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~n~~gtY~H 150 (158)
T PF07685_consen 83 TM------EKEKALGYVEARVDN----GKKGEEVRGHEFHYGRTTGIPGEPPFFKV--NGGGGFDGAIYQKGNVLGTYLH 150 (158)
T ss_pred EE------cCcEEEEEEEEEECC----CCCCCEEEEEEEeCeEEECCCCCcceEEE--ecCCcccceEeCCCCEEEEeee
Confidence 75 224566776665543 11112579999998887765543332222 2222221222 35899999999
Q ss_pred CcccC
Q 045794 233 PEKSG 237 (578)
Q Consensus 233 PE~~~ 237 (578)
--+.+
T Consensus 151 g~f~~ 155 (158)
T PF07685_consen 151 GHFDN 155 (158)
T ss_pred eeECC
Confidence 77654
No 115
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=99.54 E-value=2.4e-13 Score=142.44 Aligned_cols=197 Identities=18% Similarity=0.195 Sum_probs=141.8
Q ss_pred CcEEEEEECC--CCCHHHHHHHHHHCCCeEEEeCCcc--CCC-CCCEEEECCCCCchHHHHHHH-hhcHHHHHHHHHhCC
Q 045794 47 DSVVTLLDYG--AGNVRSVRNAIRHLGFGIKDVQTPE--DIL-NANRLIFPGVGAFAAAMDVLN-KTGMAEALCAYIEKD 120 (578)
Q Consensus 47 ~~~I~vld~~--~g~~~~i~~~L~~~Gv~v~~v~~~~--dl~-~~DGlILpGGg~~~~~~~~l~-~~~l~~~i~~~~~~g 120 (578)
+.+|+|-.=. +=+...-++.|+++|++++++++.. +++ ++|+|+||||-..... ..+. .+.+.+.|+++.+.|
T Consensus 245 ~~rIAVA~D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D~~lP~~~D~vYlgGGYPElfA-~~L~~n~~~~~~i~~~~~~G 323 (451)
T COG1797 245 GVRIAVARDAAFNFYYPENLELLREAGAELVFFSPLADEELPPDVDAVYLGGGYPELFA-EELSANESMRRAIKAFAAAG 323 (451)
T ss_pred CceEEEEecchhccccHHHHHHHHHCCCEEEEeCCcCCCCCCCCCCEEEeCCCChHHHH-HHHhhCHHHHHHHHHHHHcC
Confidence 3678886311 1133345789999999999999865 466 6999999998432222 1222 225889999999999
Q ss_pred CCEEEEechHHHHhhhccc--CCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeee
Q 045794 121 RPFLGICLGLQLLFQSSEE--NGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAM 198 (578)
Q Consensus 121 ~PIlGIClG~QlLa~a~~e--~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~ 198 (578)
+||+|.|+|++.|+..+++ +..+.++|++|+.+.+ ..+...+||..++...++++......++++++|.....
T Consensus 324 ~piyaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~m-----~~Rl~~lGY~~~~~~~d~~~~~~G~~irGHEFHyS~~~ 398 (451)
T COG1797 324 KPIYAECGGLMYLGESLEDADGDTYEMVGVLPGSTRM-----TKRLQALGYREAEAVDDTLLLRAGEKIRGHEFHYSRLI 398 (451)
T ss_pred CceEEecccceeehhheeccCCceeeeeeeeccchhh-----hhhhhccceeEEEecCCcccccCCceeeeeeeeeeecc
Confidence 9999999999999999863 3578999999999764 23346789999999888887765457899999987765
Q ss_pred cCCCCCCcEEEEeecCC-ceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhc
Q 045794 199 PSDDNKEWVSSTCNYGD-NFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPK 251 (578)
Q Consensus 199 ~~~~~~~~~~~~~~~~d-~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~ 251 (578)
..+...+........+. +.-+++..+|++|++.|-.+.+. ..++++|++.+
T Consensus 399 ~~~~~~~a~~~~~g~g~~~~~~G~~~gnv~asY~H~H~~s~--~~~~~~~v~~~ 450 (451)
T COG1797 399 TEEDAEPAFRVRRGDGIDNGRDGYRSGNVLASYLHLHFASN--PAFAARFVAAA 450 (451)
T ss_pred cCCcCceeeeeecccCccccccceeeCCeEEEEEeeecccC--HHHHHHHHHhh
Confidence 44432333323322221 12357888999999999988653 47888998765
No 116
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.52 E-value=1.5e-13 Score=149.23 Aligned_cols=187 Identities=20% Similarity=0.246 Sum_probs=113.9
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCC-eE--EEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEE
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGF-GI--KDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFL 124 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv-~v--~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIl 124 (578)
++|+|+++. +..++++..|. ++ ..++.++++.++|+||||||..... ..+ ..++.+.++++ ++|||
T Consensus 1 m~iGvlal~-----sv~~al~~lg~~~~~vv~~~~~~~l~~~D~lILPGG~~~~~--~~l-~~~l~~~i~~~---g~pvl 69 (476)
T PRK06278 1 MEIGLLDIK-----GSLPCFENFGNLPTKIIDENNIKEIKDLDGLIIPGGSLVES--GSL-TDELKKEILNF---DGYII 69 (476)
T ss_pred CEEEEEehh-----hHHHHHHHhcCCCcEEEEeCChHHhccCCEEEECCCchhhc--chH-HHHHHHHHHHc---CCeEE
Confidence 359999986 55666766664 44 4477788899999999999752211 111 12455556554 89999
Q ss_pred EEechHHHHhhhcccCC------CcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEee-eee
Q 045794 125 GICLGLQLLFQSSEENG------PVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHS-YRA 197 (578)
Q Consensus 125 GIClG~QlLa~a~~e~~------~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~-~~v 197 (578)
|||+|||||++.+.++. ...|||++|+. |... +. ..+....+....++......+.+|++|. .++
T Consensus 70 GICgG~QmLg~~~~eg~e~~~~~~~~GLGll~~~---~~~~---K~--~~~v~g~v~~~~~~~~~~~~v~GyEiH~~G~t 141 (476)
T PRK06278 70 GICSGFQILSEKIDIGRKSPVPIIKEGLGLLDVE---FSPL---IC--TDRVEFKIEDDSLFTKKNERGTGFHCHTYGNI 141 (476)
T ss_pred EEcHHHHhcccccccCcccccccccCccceeeee---ecCc---ee--EeEEEEEEEecccccCCCCEEEEEeeccCCEE
Confidence 99999999999876542 36799999986 3322 11 1112222221111111112578999998 444
Q ss_pred ecCCCCCCcEE---EEee----cCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccCCCC
Q 045794 198 MPSDDNKEWVS---STCN----YGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPK 256 (578)
Q Consensus 198 ~~~~~~~~~~~---~~~~----~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~~~ 256 (578)
...+...++.. .... .+....+|+.++++||+|+|..+. +..+-++|++.+.+.+.
T Consensus 142 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~eG~~~g~V~GTYlHGifd---n~~~~~~~L~~l~~~~~ 204 (476)
T PRK06278 142 EINGDTKILTYSKIQKLNYKMVGEKEILSGVFKGKVFGTMVHNFLD---NPFVVENFLKYLKIKED 204 (476)
T ss_pred EECCCccchhhcceeeeeccCCCCcCCcCceecCCEEEEecCcccC---CHHHHHHHHHHcCCChH
Confidence 32121122211 1111 111223566688999999999996 44677889988887633
No 117
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.51 E-value=2.9e-13 Score=148.32 Aligned_cols=185 Identities=16% Similarity=0.209 Sum_probs=128.6
Q ss_pred cEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEE
Q 045794 48 SVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGI 126 (578)
Q Consensus 48 ~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGI 126 (578)
.+|+|+.++ ..++.++ +.|+..- .+.+.+..++++++|+|+||||.+...++.+++..++.+.|+++++.+.|||||
T Consensus 248 ~~Iav~~~~~~~nf~~~-~~L~~~~-~~~f~~~~~~l~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgi 325 (475)
T TIGR00313 248 IRIGVVRLPRISNFTDF-EPLRYEA-FVKFLDLDDSLTGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGI 325 (475)
T ss_pred cEEEEEcCCcccCccCh-HHHhhCC-CeEEeCCccccccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEE
Confidence 689999877 3455553 5666652 566677777888999999999998777777777778999999999999999999
Q ss_pred echHHHHhhhcccC-------CCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeec
Q 045794 127 CLGLQLLFQSSEEN-------GPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMP 199 (578)
Q Consensus 127 ClG~QlLa~a~~e~-------~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~ 199 (578)
|+|||+|++.+.+. +...|+|++|+.+.. .. ...+|+........ .. + ..+.+|++|+..+..
T Consensus 326 CgG~q~Lg~~i~d~~g~e~~~~~~~glGll~~~t~~-~~-----~~~~g~~~~~~~~~--~~-g-~~~~G~E~H~g~t~~ 395 (475)
T TIGR00313 326 CGGYQMLGKELIDKEKKESDVGDIEGLGLLDAKTYF-GE-----DKITKQSQGRVEGN--NR-G-ETVKGYEIHEGFTRS 395 (475)
T ss_pred cHHHHHhhhhhcCCccccCCCCCcceeeeeeeEEEE-cC-----CcEEEEEEEEEecC--CC-C-CeEEEEeeeceEECC
Confidence 99999999987532 246899999998764 22 23366665444321 11 1 247899999987642
Q ss_pred CCCCCCcEEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccCC
Q 045794 200 SDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~ 254 (578)
. ..++..... .+ .+ -.++++||+++|--+. +..+-++|++.++..
T Consensus 396 -~-~~pl~~~~~-~G--~~--~~~g~v~GtYlHgl~~---n~~~~~~~l~~~~~~ 440 (475)
T TIGR00313 396 -K-EKPLFKIER-FG--NC--GNDGNAWGTYLHGLFE---NYEFRRYIINLLRKR 440 (475)
T ss_pred -C-CcCceeccC-CC--cc--CCCCCEEEEeeeeccC---CHHHHHHHHHHHHHh
Confidence 1 123222211 11 11 1247999999998553 346778888887654
No 118
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.48 E-value=1.5e-13 Score=139.17 Aligned_cols=123 Identities=11% Similarity=0.127 Sum_probs=109.6
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCC-CCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGR-PIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
.+|+++||++++. .|...+|.+.+ ..+++++++.+.+.|+++++++|+++++
T Consensus 4 ~~iipaiD~~~G~---------------------------~V~~~~~~~~~~~~dp~~~a~~~~~~g~~~l~i~Dl~~~~ 56 (258)
T PRK01033 4 PRIIPCLLLKDGG---------------------------LVKTVKFKDPRYIGDPINAVRIFNEKEVDELIVLDIDASK 56 (258)
T ss_pred cEEEEEEEEECCc---------------------------EEEeecccCceeCCCHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 5899999998752 57788898766 6699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+.+|+|+++++++++.+++||+++||+++++|++++++ .|++++++|++++.++..+.++.+.+.++.|.|
T Consensus 57 ~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~-~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~v 127 (258)
T PRK01033 57 RGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFS-LGVEKVSINTAALEDPDLITEAAERFGSQSVVV 127 (258)
T ss_pred CCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHH-CCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEE
Confidence 99999999999999999999999999999999999995 899999999999988877788777776555543
No 119
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.48 E-value=1.8e-13 Score=137.64 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=106.8
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCC-CCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGR-PIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
+|+++||+++++ .|...+|.+.. ..++.++++.+++.|+++++++|++++|+
T Consensus 2 ~ii~~iD~~~g~---------------------------~v~~~~~~~~~~~~d~~~~a~~~~~~G~~~i~i~d~~~~~~ 54 (243)
T cd04731 2 RIIPCLDVKDGR---------------------------VVKGVNFKNLRDAGDPVELAKRYNEQGADELVFLDITASSE 54 (243)
T ss_pred eEEEEEEEECCe---------------------------EEEeEccccceeCCCHHHHHHHHHHCCCCEEEEEcCCcccc
Confidence 699999999863 23555677654 45899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCe
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIE 575 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~ 575 (578)
..|+|+++++++++.+++||+++|||++.+|++++++ .||++|++|++++.++..+.++.+.+.++.+.
T Consensus 55 ~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~-~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~ 123 (243)
T cd04731 55 GRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLR-AGADKVSINSAAVENPELIREIAKRFGSQCVV 123 (243)
T ss_pred cCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCceEEECchhhhChHHHHHHHHHcCCCCEE
Confidence 9999999999999999999999999999999999996 89999999999999988888888887665454
No 120
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=99.46 E-value=1.4e-13 Score=132.07 Aligned_cols=125 Identities=20% Similarity=0.301 Sum_probs=107.8
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
.||+.+||++++++. |-|+. .+-+. .+ +++++++.+.+.|++|+++.||++.-.
T Consensus 4 kRIIPCLDVk~GrVV-------KGv~F-----------------~~lrd-~G-DpVelA~~Y~e~GADElvFlDItAs~~ 57 (256)
T COG0107 4 KRIIPCLDVKDGRVV-------KGVNF-----------------KNLRD-AG-DPVELAKRYNEEGADELVFLDITASSE 57 (256)
T ss_pred ceeEeeEEccCCEEE-------ecccc-----------------cchhh-cC-ChHHHHHHHHHcCCCeEEEEecccccc
Confidence 589999999987553 11111 11111 12 799999999999999999999999888
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeec
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 577 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~ 577 (578)
.+.++++.++++++.+.+|+.++|||++.+|++++++ .|||.|.|+|+...++-.+.++.+.+.+|+|.|-
T Consensus 58 gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~-aGADKVSINsaAv~~p~lI~~~a~~FGsQciVva 128 (256)
T COG0107 58 GRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLR-AGADKVSINSAAVKDPELITEAADRFGSQCIVVA 128 (256)
T ss_pred cchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHH-cCCCeeeeChhHhcChHHHHHHHHHhCCceEEEE
Confidence 8889999999999999999999999999999999996 9999999999999999999999999999998764
No 121
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.46 E-value=1.8e-12 Score=130.88 Aligned_cols=193 Identities=20% Similarity=0.301 Sum_probs=114.7
Q ss_pred CcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCc------cCCCCCCEEEECCCCCchHHHH-------HHHhhcHHHH
Q 045794 47 DSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTP------EDILNANRLIFPGVGAFAAAMD-------VLNKTGMAEA 112 (578)
Q Consensus 47 ~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~------~dl~~~DGlILpGGg~~~~~~~-------~l~~~~l~~~ 112 (578)
+++|+|+.++ +..-.+..++|+++|+++.++... .++++||+|+||||.++.+.+. .+. ..+.+.
T Consensus 3 ~~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~-~~l~~~ 81 (261)
T PRK01175 3 SIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLK-AVLRKD 81 (261)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHH-HHHHHH
Confidence 4679999884 556778899999999988876532 2478899999999854322211 111 123477
Q ss_pred HHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceee-------eecCCCCCCcceeeeEEEEEcc-CCcccccC
Q 045794 113 LCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVG-------RFDSSNGFRVPQIGWNALQITK-DSEILDDV 184 (578)
Q Consensus 113 i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~-------~~~~~~~~~~~~~G~~~i~~~~-~~~l~~~l 184 (578)
|+++++.++|+||||.|+|+|+. +|++|+... .+..++..+ -.-.|..+.+.. ++++++.+
T Consensus 82 Ik~f~~~gkpVLGICnG~QlLa~----------~GlLpg~~~~~~~~~~~L~~N~s~~-f~~~~~~~~v~~~~s~~~~~~ 150 (261)
T PRK01175 82 IEEFIDEGYPIIGICNGFQVLVE----------LGLLPGFDEIAEKPEMALTVNESNR-FECRPTYLKKENRKCIFTKLL 150 (261)
T ss_pred HHHHHHCCCeEEEECHHHHHHHH----------CCCCCCCCccccCCcceEeecCCCC-eEEeeeEEEECCCCChhHhcc
Confidence 89999999999999999999998 345555100 011110111 112455666654 55666544
Q ss_pred C-C-eEEEEEeeeeeec-CCC-------CCCcEEEEe-e----------cCCc---eEEEEE--eCCEEEEeeCCcccC-
Q 045794 185 G-D-HHVYFVHSYRAMP-SDD-------NKEWVSSTC-N----------YGDN---FIASVR--RGNVHAVQFHPEKSG- 237 (578)
Q Consensus 185 ~-~-~~~~~~H~~~v~~-~~~-------~~~~~~~~~-~----------~~d~---~iegi~--~~~i~gvQFHPE~~~- 237 (578)
. . ....-.|...... .+. ....+.... + ..++ -|+|+. +++++|...|||...
T Consensus 151 ~~~~~~~piah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NPNGs~~~IAGi~~~~G~vlglMpHPEr~~~ 230 (261)
T PRK01175 151 KKDVFQVPVAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNPNGSIYNIAGITNEKGNVIGLMPHPERAFY 230 (261)
T ss_pred CCCEEEEeeEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCCCCChhhcceeECCCCCEEEEcCCHHHhhc
Confidence 4 1 2222244432221 110 111222211 1 1222 356776 479999999999742
Q ss_pred -------------cchHHHHHHHhhhc
Q 045794 238 -------------DVGLSVLRRFLHPK 251 (578)
Q Consensus 238 -------------~~~~~l~~~Fl~~~ 251 (578)
.++..||+++++..
T Consensus 231 ~~~~~~~~~~~~~~~g~~~f~~~~~~~ 257 (261)
T PRK01175 231 GYQHPYWEKEEDYGDGKIFFDSLINYL 257 (261)
T ss_pred hhhccccccccCCCchHHHHHHHHHHH
Confidence 17888999887644
No 122
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.46 E-value=3.2e-12 Score=123.16 Aligned_cols=189 Identities=22% Similarity=0.389 Sum_probs=119.7
Q ss_pred CcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCcc-CCC-CCCEEEECCCCCchHHHH--HHH-hhcHHHHHHHHHhCC
Q 045794 47 DSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTPE-DIL-NANRLIFPGVGAFAAAMD--VLN-KTGMAEALCAYIEKD 120 (578)
Q Consensus 47 ~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~~-dl~-~~DGlILpGGg~~~~~~~--~l~-~~~l~~~i~~~~~~g 120 (578)
+|+|+|+-++ ...-.....+++.+|+++..+...+ .+. ++|+|++|||-++.+.+. ++. ...+++.++++++.+
T Consensus 2 ~~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~~~~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g 81 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLLGRDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKG 81 (231)
T ss_pred CceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeecccCCCccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCC
Confidence 5789999886 4455678889999999988776544 355 699999999966655432 332 236788899999999
Q ss_pred CCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCccee--eeEEEEEcc-CCcccccCCC---eEEEEEee
Q 045794 121 RPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQI--GWNALQITK-DSEILDDVGD---HHVYFVHS 194 (578)
Q Consensus 121 ~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~--G~~~i~~~~-~~~l~~~l~~---~~~~~~H~ 194 (578)
+|+||||.|||+|.+ +|++|+..++ + ...++ -|..+++.. ++++.+.+.. +.+--.|.
T Consensus 82 ~~vLGICNGfQiL~e----------~gLlPGal~~--N----~s~~F~cr~v~l~V~~~~t~ft~~~~~g~~i~ipVAHg 145 (231)
T COG0047 82 KPVLGICNGFQILSE----------AGLLPGALTR--N----ESLRFECRWVYLRVENNNTPFTSGYEGGEVIPIPVAHG 145 (231)
T ss_pred CeEEEEcchhHHHHH----------cCcCCcceec--C----CCCceEEEEEEEEEecCCCHHHHhcCCCceEEEEEeec
Confidence 999999999999998 5688887544 1 11122 344555544 3455554442 22223444
Q ss_pred eeeecCCC-------CCCcEEE-Eee---------cCCce---EEEEE--eCCEEEEeeCCccc------CcchHHHHHH
Q 045794 195 YRAMPSDD-------NKEWVSS-TCN---------YGDNF---IASVR--RGNVHAVQFHPEKS------GDVGLSVLRR 246 (578)
Q Consensus 195 ~~v~~~~~-------~~~~~~~-~~~---------~~d~~---iegi~--~~~i~gvQFHPE~~------~~~~~~l~~~ 246 (578)
......+. ....+.. ..+ ..++. |.++. +++++|..-|||.. +.|+..||+.
T Consensus 146 EGr~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~IaGI~n~~G~V~gmMPHPERa~~~~~g~~Dg~~lF~s 225 (231)
T COG0047 146 EGRYYADDETLAELEENGQVVFRYVDNNGETEEYANPNGSVNGIAGITNEDGNVLGMMPHPERASESLLGGEDGLRLFRS 225 (231)
T ss_pred ceeEEccHHHHHHHhhCCeEEEEEecCCCceeeeeCCCCChhhceeEEcCCCCEEEecCCchhhhhcccCCchHHHHHHH
Confidence 33221111 1111211 111 22333 55665 46999999999973 2367888888
Q ss_pred Hhhhc
Q 045794 247 FLHPK 251 (578)
Q Consensus 247 Fl~~~ 251 (578)
.+.++
T Consensus 226 ~~~~~ 230 (231)
T COG0047 226 ARKYL 230 (231)
T ss_pred HHHhh
Confidence 77654
No 123
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=99.45 E-value=2.4e-12 Score=137.33 Aligned_cols=191 Identities=21% Similarity=0.294 Sum_probs=132.5
Q ss_pred CCcEEEEEECC-CCCHHHHHHHHHH-CCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 46 SDSVVTLLDYG-AGNVRSVRNAIRH-LGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 46 ~~~~I~vld~~-~g~~~~i~~~L~~-~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
...+|+|+.++ .+|+..+ ..|+. .++++.+++...++.++|.+||||+.++..++.++++.++.+.+.+++..+.||
T Consensus 250 ~~i~Iav~~lp~isNFtD~-dpL~~~~~v~v~~v~~~~~l~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~v 328 (486)
T COG1492 250 RAIRIAVIRLPRISNFTDF-DPLRAEPDVRVRFVKPGSDLRDADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDV 328 (486)
T ss_pred CceEEEEecCCCccccccc-hhhhcCCCeEEEEeccCCCCCCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCE
Confidence 45689999887 3455554 34444 599999999999999999999999999999999999889999999999999999
Q ss_pred EEEechHHHHhhhccc-----C--CCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeee
Q 045794 124 LGICLGLQLLFQSSEE-----N--GPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYR 196 (578)
Q Consensus 124 lGIClG~QlLa~a~~e-----~--~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~ 196 (578)
+|||+|||||+..+.+ + +...|||+++..+. |... + ....+. ... .. ......+|+.|...
T Consensus 329 iGICGG~QmLG~~i~Dp~g~Eg~~~~~~GLgLldv~T~-~~~~---K----~~~~~~--~~~-~~-~~~~~~GyEIH~G~ 396 (486)
T COG1492 329 IGICGGYQMLGRRLKDPSGIEGAKGEAEGLGLLDVETC-FAGG---K----TTRVVT--GAL-IL-SGLEVEGYEIHMGI 396 (486)
T ss_pred EEEcchHHhhhhhhcCcccccCcccccCCccceEEEEE-ecCC---c----eEEEEe--eee-ec-CCcceeEEEEEEEE
Confidence 9999999999998763 2 24679999998865 3221 0 000000 000 11 11256889999887
Q ss_pred eecCCCCCCcEEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccCC
Q 045794 197 AMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 197 v~~~~~~~~~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~ 254 (578)
+.................++.+. ..++++|+++|-=+.. ....+.|++++...
T Consensus 397 t~~~~~~~~~~~~~~~~~dG~i~--~dg~v~gTy~HGif~n---~~~~~~fl~~~~~~ 449 (486)
T COG1492 397 TNRVDDSRPFNRLGSGVEDGAIS--ADGRVFGTYLHGIFEN---DIFREAFLRELGER 449 (486)
T ss_pred EecccccccccccCCcccCcccc--cCCcEEEEEecCcccc---HHHHHHHHHHHhcc
Confidence 76533222222222121223221 2579999999977743 35678888888774
No 124
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=99.44 E-value=7.7e-13 Score=120.25 Aligned_cols=191 Identities=22% Similarity=0.345 Sum_probs=109.3
Q ss_pred CCcEEEEEECCCCCHHHHHHHHHHCC------C--eEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHH
Q 045794 46 SDSVVTLLDYGAGNVRSVRNAIRHLG------F--GIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYI 117 (578)
Q Consensus 46 ~~~~I~vld~~~g~~~~i~~~L~~~G------v--~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~ 117 (578)
+..+|+|+.+ .|.+-.....++++- + ++..+..++|+.+||++|||||+++....-. ...++.+.+.+++
T Consensus 10 tn~VIGVLAL-QGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT~~D~aq~DaLIIPGGEST~mslia-~~tgL~d~L~~fV 87 (226)
T KOG3210|consen 10 TNVVIGVLAL-QGAFIEHVNHVEKCIVENRYEIKLSVMTVKTKNDLAQCDALIIPGGESTAMSLIA-ERTGLYDDLYAFV 87 (226)
T ss_pred cceEEeeeeh-hhHHHHHHHHHHHhhccCcceEEEEEEeecCHHHHhhCCEEEecCCchhHHHHHH-hhhhhHHHHHHHh
Confidence 3455899998 466655555555332 2 3345677899999999999999865433222 2236788888888
Q ss_pred hCC-CCEEEEechHHHHhhhcccCC-CcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCccccc-CC---CeEEEE
Q 045794 118 EKD-RPFLGICLGLQLLFQSSEENG-PVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDD-VG---DHHVYF 191 (578)
Q Consensus 118 ~~g-~PIlGIClG~QlLa~a~~e~~-~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~-l~---~~~~~~ 191 (578)
.++ +|+||.|.||.+|...+..+. ...-|++++.++++- .+|.+...++.... ++. ++ ++...+
T Consensus 88 hn~~k~~WGTCAGmI~LS~ql~nek~~~~tL~~lkv~V~RN---------~FG~QaqSFT~~~~-~snfi~~~~~FpATF 157 (226)
T KOG3210|consen 88 HNPSKVTWGTCAGMIYLSQQLSNEKKLVKTLNLLKVKVKRN---------AFGRQAQSFTRICD-FSNFIPHCNDFPATF 157 (226)
T ss_pred cCCCccceeechhhhhhhhhhcCCcchhhhhhheeEEEeec---------cccchhhhheehhc-ccccccCcccCchhh
Confidence 776 999999999999998765432 234577788887761 12222222222211 111 01 111111
Q ss_pred EeeeeeecCCCCCCcEEEEe---ecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHHHHhhh
Q 045794 192 VHSYRAMPSDDNKEWVSSTC---NYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLRRFLHP 250 (578)
Q Consensus 192 ~H~~~v~~~~~~~~~~~~~~---~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~~Fl~~ 250 (578)
...-....+-. +-.+.+.. ..++..+.+.++ .|++++.||||....| .++.++|++.
T Consensus 158 IRAPVie~ILD-~I~V~~l~~~~~nG~~~iVAa~Q~~~iL~TSFHPELa~~D-~R~HdW~ire 218 (226)
T KOG3210|consen 158 IRAPVIEEILD-PIHVQVLYKLDGNGQELIVAAKQKNNILATSFHPELAEND-IRFHDWFIRE 218 (226)
T ss_pred eechhHHHhcC-chhheEEEEecCCCcEEEEEEeccCCEeeeecChhhhccc-chHHHHHHHH
Confidence 00000000001 11111111 123455666665 7999999999997443 3677888754
No 125
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.43 E-value=4.6e-13 Score=135.50 Aligned_cols=121 Identities=19% Similarity=0.279 Sum_probs=106.7
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCC---CCCHHHHHHHHHHcCCcEEEEeccCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGR---PIGAYELAKAVEDLGAGEILLNCIDC 502 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~e~~~~~~~~G~~~ii~tdi~~ 502 (578)
.+|+++||++++ ++ +++|+..+ ..++.++++.+++.|++++.++|+++
T Consensus 4 ~~iip~iD~~~G----------------------------~~-V~~~~~~~~~~~~dp~~~a~~~~~~G~~~l~v~Dl~~ 54 (254)
T TIGR00735 4 KRIIPCLDVRDG----------------------------RV-VKGVQFLNLRDAGDPVELAQRYDEEGADELVFLDITA 54 (254)
T ss_pred CeEEEEEEeECC----------------------------EE-EEeEeecCceECCCHHHHHHHHHHcCCCEEEEEcCCc
Confidence 589999999875 34 77776432 45899999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 503 DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 503 dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.++..+.|+++++++++.+++||+++|||++.+|++++++ .||++|++|+++..++..+.++.+.+.++.|.+
T Consensus 55 ~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~-~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~ 127 (254)
T TIGR00735 55 SSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLR-AGADKVSINTAAVKNPELIYELADRFGSQCIVV 127 (254)
T ss_pred ccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCCEEEEChhHhhChHHHHHHHHHcCCCCEEE
Confidence 9999999999999999999999999999999999999996 899999999999998888888888776555543
No 126
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.39 E-value=1.6e-12 Score=135.64 Aligned_cols=100 Identities=21% Similarity=0.202 Sum_probs=91.5
Q ss_pred ccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC-CCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHH
Q 045794 471 GGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG-FDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAA 549 (578)
Q Consensus 471 g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G-~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv 549 (578)
||.. ...+..++++.+++.|++.|.+|.+++++.++| .|++.++++++.+++|||++|||.+.+|+.++++.+||+||
T Consensus 143 G~~~-~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgV 221 (321)
T PRK10415 143 GWAP-EHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221 (321)
T ss_pred cccC-CcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEE
Confidence 4544 345788999999999999999999999999999 69999999999999999999999999999999977899999
Q ss_pred hhhhhhccCCCCHHHHHHHHHh
Q 045794 550 LAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 550 ~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
|+|+++..+++.+.++++++..
T Consensus 222 miGR~~l~nP~if~~~~~~~~~ 243 (321)
T PRK10415 222 MIGRAAQGRPWIFREIQHYLDT 243 (321)
T ss_pred EEChHhhcCChHHHHHHHHHhC
Confidence 9999999999999999998864
No 127
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.38 E-value=1.7e-12 Score=129.50 Aligned_cols=125 Identities=14% Similarity=0.174 Sum_probs=103.2
Q ss_pred CCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 425 NQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 425 ~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
..+|++|||+++++. |+. +..++|.. ..++.++++.+++.|+++++++|++++|
T Consensus 3 ~~~ii~~iD~~~g~~----------V~~--------------~~~~~~~~--~~dp~~~a~~~~~~g~~~i~i~dl~~~~ 56 (232)
T TIGR03572 3 KKRIIPCLLLKDGRL----------VKT--------------VQFKDPRY--IGDPVNAARIYNAKGADELIVLDIDASK 56 (232)
T ss_pred CceEEEEEEEECCeE----------EEe--------------eccCCCeE--CCCHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 358999999998632 111 11567764 3489999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+.+|+|+++++++++.+++||+++||+++.+|+.++++ .|+++|++|++++.++-.+.++.+.+.++.|.+
T Consensus 57 ~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~-~G~~~vilg~~~l~~~~~~~~~~~~~~~~~i~v 127 (232)
T TIGR03572 57 RGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLS-LGADKVSINTAALENPDLIEEAARRFGSQCVVV 127 (232)
T ss_pred cCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH-cCCCEEEEChhHhcCHHHHHHHHHHcCCceEEE
Confidence 99999999999999999999999999999999999985 899999999999988755666655554443443
No 128
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.37 E-value=2.2e-12 Score=128.71 Aligned_cols=113 Identities=22% Similarity=0.308 Sum_probs=98.3
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEE--EcccccCC---CCCHHHHHHHHHHcCCcEEEEeccC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCT--VNGGREGR---PIGAYELAKAVEDLGAGEILLNCID 501 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~---~~~~~e~~~~~~~~G~~~ii~tdi~ 501 (578)
+|+.+||++++ ++. ++||++.. ..++.++++.+++.|++++.++|+
T Consensus 2 ~iip~iD~~~g----------------------------~~v~~~~G~~~~~~~~~~~~~~~a~~~~~~g~~~i~v~dl- 52 (233)
T PRK00748 2 IIIPAIDLKDG----------------------------KCVRLYQGDYDQATVYSDDPVAQAKAWEDQGAKWLHLVDL- 52 (233)
T ss_pred eEEEEEEEECC----------------------------eEEEccccccccceEecCCHHHHHHHHHHcCCCEEEEEeC-
Confidence 58999999976 333 78998875 569999999999999999999999
Q ss_pred CCCCCC--CCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 502 CDGQGK--GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 502 ~dG~~~--G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+|+.+ +.|+++++++++.+++||+++|||++.+|++++++ .||++|++|++++.++..+.++.+.+.
T Consensus 53 -d~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~-~Ga~~vilg~~~l~~~~~l~ei~~~~~ 121 (233)
T PRK00748 53 -DGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLD-AGVSRVIIGTAAVKNPELVKEACKKFP 121 (233)
T ss_pred -CccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHH-cCCCEEEECchHHhCHHHHHHHHHHhC
Confidence 55544 48999999999999999999999999999999996 899999999999988766777777663
No 129
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.37 E-value=1.1e-11 Score=122.82 Aligned_cols=198 Identities=20% Similarity=0.174 Sum_probs=136.1
Q ss_pred EEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 303 VRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 303 ~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
.....++.++|+.+.+.|+..+.+. . .+.++++++.+.+|+.. =.-+++...+-++|++.+.+++
T Consensus 19 ~~~~~~~~~~a~a~~~~G~~~~~~~---~-----------~~~i~~i~~~~~~Pil~-~~~~d~~~~~~~~~~~~~~v~~ 83 (221)
T PRK01130 19 LHSPEIMAAMALAAVQGGAVGIRAN---G-----------VEDIKAIRAVVDVPIIG-IIKRDYPDSEVYITPTLKEVDA 83 (221)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEcC---C-----------HHHHHHHHHhCCCCEEE-EEecCCCCCCceECCCHHHHHH
Confidence 3344588999999999999877751 1 46677777778899841 0112211123578888899999
Q ss_pred HHHcCcceeecchhhhccch-hhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 383 YFRSGADKISIGSDAVYAAE-DYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
+.++|||.|++.......+. +. ..++++++.+..+ +.+..++
T Consensus 84 a~~aGad~I~~d~~~~~~p~~~~-------~~~~i~~~~~~~~---i~vi~~v--------------------------- 126 (221)
T PRK01130 84 LAAAGADIIALDATLRPRPDGET-------LAELVKRIKEYPG---QLLMADC--------------------------- 126 (221)
T ss_pred HHHcCCCEEEEeCCCCCCCCCCC-------HHHHHHHHHhCCC---CeEEEeC---------------------------
Confidence 99999998888765442110 11 1255555543222 2222221
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC---CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG---QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFS 538 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG---~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~ 538 (578)
...+.++.+.+.|++.+.++.....+ ...+.++++++++++.+++||+++|||++++|+.
T Consensus 127 -----------------~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~ 189 (221)
T PRK01130 127 -----------------STLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAK 189 (221)
T ss_pred -----------------CCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHH
Confidence 12455688999999988765332222 2356689999999998899999999999999999
Q ss_pred HHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
++++ .|+++|++|+++.......+.+.+.++
T Consensus 190 ~~l~-~GadgV~iGsai~~~~~~~~~~~~~~~ 220 (221)
T PRK01130 190 KALE-LGAHAVVVGGAITRPEEITKWFVDALK 220 (221)
T ss_pred HHHH-CCCCEEEEchHhcCCHHHHHHHHHHhh
Confidence 9996 899999999999876665666555554
No 130
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=99.37 E-value=9.7e-12 Score=118.28 Aligned_cols=188 Identities=21% Similarity=0.221 Sum_probs=124.4
Q ss_pred CCCHHHHHHHHHHCCCeEEEeC--CccC--CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHH
Q 045794 57 AGNVRSVRNAIRHLGFGIKDVQ--TPED--ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQL 132 (578)
Q Consensus 57 ~g~~~~i~~~L~~~Gv~v~~v~--~~~d--l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~Ql 132 (578)
.||.-.+.+..+.+|+.+.+++ ..+. .+.||.+++.||.++.+.+..-......+.|+++++.++|+|+||.|+|+
T Consensus 20 ~GNil~Lr~ra~~rgi~v~i~~vsl~d~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~Ql 99 (250)
T COG3442 20 NGNILVLRQRAEKRGIKVEIVEVSLTDTFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQL 99 (250)
T ss_pred CCceeeehHHHHhcCCceEEEEeecCCCCCcccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhh
Confidence 4577778889999998777653 2232 35799999999876554432211123456799999999999999999999
Q ss_pred Hhhhcc--cCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcEEEE
Q 045794 133 LFQSSE--ENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSST 210 (578)
Q Consensus 133 La~a~~--e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~~~~ 210 (578)
|+++.+ .+....|+|+++..+.. ....+.+|-..++.+.....+. +...+|++|+.+....+...++-.+.
T Consensus 100 LG~yY~~a~G~ri~GlGiLd~~T~~-----~~~~R~IGdiv~~~~~~~e~~~--et~~GFENH~GrT~L~~d~~pLG~Vv 172 (250)
T COG3442 100 LGQYYETASGTRIDGLGILDHYTEN-----PQTKRFIGDIVIENTLAGEEFG--ETLVGFENHGGRTYLGPDVKPLGKVV 172 (250)
T ss_pred ccceeecCCCcEeecccceeeeecc-----ccccceeeeEEeecccchHHhC--CeeeeeecCCCceecCCCCccceeEE
Confidence 999865 33456899999887652 1234567754444332221221 25788999999887665555554444
Q ss_pred eecCC---ceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 211 CNYGD---NFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 211 ~~~~d---~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
..+++ .-.||+.+++++|++||-=.-+. +.++-++++..+-
T Consensus 173 ~G~GNn~eD~~eG~~ykn~~aTY~HGP~L~r-Np~LAd~Ll~tAl 216 (250)
T COG3442 173 YGYGNNGEDGTEGAHYKNVIATYFHGPILSR-NPELADRLLTTAL 216 (250)
T ss_pred EccCCCccccccceeeeeeEEEeecCccccC-CHHHHHHHHHHHH
Confidence 43332 23477888999999999554332 3456666665543
No 131
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.35 E-value=2.4e-12 Score=127.92 Aligned_cols=110 Identities=17% Similarity=0.235 Sum_probs=92.4
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE--EEcccccCCC--CCHHHHHHHHHHcCCcEEEEeccCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC--TVNGGREGRP--IGAYELAKAVEDLGAGEILLNCIDC 502 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~--~~~~e~~~~~~~~G~~~ii~tdi~~ 502 (578)
+|+++||++++ +| .++||++... .++.++++.+.+. ++++++ ++.
T Consensus 3 rIip~iD~~~G----------------------------~vVr~~~G~~~~~~~~~dp~~~a~~~~~~-~~~l~i--vDl 51 (228)
T PRK04128 3 RIYPAIDLMNG----------------------------KAVRLYKGRKEEVKVYGDPVEIALRFSEY-VDKIHV--VDL 51 (228)
T ss_pred EEEEEEEeECC----------------------------EEEEEEeccccCceECCCHHHHHHHHHHh-CCEEEE--EEC
Confidence 69999999976 34 4789987654 3899999999998 999999 666
Q ss_pred CCCCCC--CCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 503 DGQGKG--FDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 503 dG~~~G--~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
||+++| +|+++++++++.+++||+++|||++.+|++++++ .|+++|++|++.+ ++--++++.+.+
T Consensus 52 dga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~-~G~~~vivGtaa~-~~~~l~~~~~~~ 118 (228)
T PRK04128 52 DGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYE-IGVENVIIGTKAF-DLEFLEKVTSEF 118 (228)
T ss_pred cchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHH-CCCCEEEECchhc-CHHHHHHHHHHc
Confidence 788777 7999999999999999999999999999999996 8999999999998 443344444443
No 132
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.1e-11 Score=129.09 Aligned_cols=166 Identities=23% Similarity=0.282 Sum_probs=126.4
Q ss_pred hccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeec--------------chhhhccchhhhhccccCCchHHH
Q 045794 352 NVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISI--------------GSDAVYAAEDYLKTGVKTGKSSLE 417 (578)
Q Consensus 352 ~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~--------------gt~~~~~~~~~~~~~~~~~~~~l~ 417 (578)
+..+-+|++|.--.. -.|.++.+-+.|++.|-| |++++++ |+.+. ++++
T Consensus 66 e~p~~vQl~gsdp~~---------l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~-p~lv~-------~iv~ 128 (323)
T COG0042 66 ERPVAVQLGGSDPEL---------LAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKN-PELLA-------EIVK 128 (323)
T ss_pred CCCEEEEecCCCHHH---------HHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCC-HHHHH-------HHHH
Confidence 344668888876533 236677777888887666 4566663 34432 4555
Q ss_pred HHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEE
Q 045794 418 QISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILL 497 (578)
Q Consensus 418 ~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~ 497 (578)
++.+..+ +|-|++-+|- ||.+. ++...++++.+++.|++.+.+
T Consensus 129 a~~~av~--~iPVTVKiRl----------------------------------G~d~~-~~~~~~ia~~~~~~g~~~ltV 171 (323)
T COG0042 129 AMVEAVG--DIPVTVKIRL----------------------------------GWDDD-DILALEIARILEDAGADALTV 171 (323)
T ss_pred HHHHhhC--CCCeEEEEec----------------------------------ccCcc-cccHHHHHHHHHhcCCCEEEE
Confidence 5555443 3455444332 33332 356789999999999999999
Q ss_pred eccCCCCCCCCC-CHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 498 NCIDCDGQGKGF-DMDLIKLISDAVS-IPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 498 tdi~~dG~~~G~-d~~li~~l~~~~~-ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
|.+++...++|+ ||+.|+++++.++ +|||++|+|.+.+|.+++++.+||||||+|++.+.+++.+.++ +++...
T Consensus 172 HgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i-~~~~~g 247 (323)
T COG0042 172 HGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI-DYLETG 247 (323)
T ss_pred ecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHH-HHhhcC
Confidence 999999999996 9999999999998 9999999999999999999989999999999999999998887 554443
No 133
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.29 E-value=8.6e-11 Score=117.35 Aligned_cols=177 Identities=15% Similarity=0.122 Sum_probs=131.4
Q ss_pred HHHHHHHHHcCCCeEEE-----EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 310 VELARQYYKEGADEISF-----LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~-----~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
++.|+.-++.||-.+++ .|+-.. +...|.+..+.|++|.+.+++||+ |+-.... +..++.+.
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~~~~~~--~~v~R~~~~~~I~~Ik~~V~iPVI---Gi~K~~~--------~~Ea~~L~ 84 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPADIRAA--GGVARMADPKMIKEIMDAVSIPVM---AKVRIGH--------FVEAQILE 84 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCchhhhhc--CCeeecCCHHHHHHHHHhCCCCeE---EeeehhH--------HHHHHHHH
Confidence 48899999999999999 455332 334677889999999999999997 5544321 67799999
Q ss_pred HcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
++|+|.|- .|. ..+|. .+++..+..+| .+-++. |
T Consensus 85 eaGvDiID-aT~-r~rP~----------~~~~~~iK~~~-~~l~MA--D------------------------------- 118 (283)
T cd04727 85 ALGVDMID-ESE-VLTPA----------DEEHHIDKHKF-KVPFVC--G------------------------------- 118 (283)
T ss_pred HcCCCEEe-ccC-CCCcH----------HHHHHHHHHHc-CCcEEc--c-------------------------------
Confidence 99999883 332 22231 26788888888 343332 3
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc--CCC---------------------------C--CCCCCCHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI--DCD---------------------------G--QGKGFDMDL 513 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi--~~d---------------------------G--~~~G~d~~l 513 (578)
++.++-+.+..+.|++.|=-|-- +.+ + ...++++++
T Consensus 119 -------------~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~el 185 (283)
T cd04727 119 -------------ARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYEL 185 (283)
T ss_pred -------------CCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHH
Confidence 34467777788888887764431 111 1 134789999
Q ss_pred HHHHHhhCCCcEE--EecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 514 IKLISDAVSIPVI--ASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 514 i~~l~~~~~ipVI--asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
++++.+..++||+ +.|||.+++++.++++ .||++|+||+++....
T Consensus 186 Lk~l~~~~~iPVV~iAeGGI~Tpena~~v~e-~GAdgVaVGSAI~~a~ 232 (283)
T cd04727 186 VKETAKLGRLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFKSE 232 (283)
T ss_pred HHHHHHhcCCCeEEEEeCCCCCHHHHHHHHH-cCCCEEEEcHHhhcCC
Confidence 9999999999997 9999999999999996 9999999999997543
No 134
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.29 E-value=9.5e-12 Score=125.85 Aligned_cols=97 Identities=21% Similarity=0.281 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 478 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 478 ~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.++.++++.+++.|++++.++|++++++.+++|+++++++++.+++||+++|||++.+|++++++ .||++|++|+.+..
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~-~Ga~~Viigt~~l~ 108 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLR-AGADKVSINSAAVA 108 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHH-cCCCEEEEChhHhh
Confidence 48999999999999999999999999999999999999999999999999999999999999996 99999999999998
Q ss_pred CCCCHHHHHHHHHhCCCe
Q 045794 558 KEVPIQSVKEHLYKEGIE 575 (578)
Q Consensus 558 ~~~~~~~~~~~l~~~~i~ 575 (578)
++..+.++.+.+.++.|-
T Consensus 109 ~p~~~~ei~~~~g~~~iv 126 (253)
T PRK02083 109 NPELISEAADRFGSQCIV 126 (253)
T ss_pred CcHHHHHHHHHcCCCCEE
Confidence 888888888877655443
No 135
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.28 E-value=4.5e-11 Score=119.79 Aligned_cols=170 Identities=22% Similarity=0.349 Sum_probs=101.7
Q ss_pred ECCCCCHHHHHHHHHHCCCeEEEeCCcc------CCCCCCEEEECCCCCchHHHHH---HHhhc-HHHHHHHHHhCCCCE
Q 045794 54 DYGAGNVRSVRNAIRHLGFGIKDVQTPE------DILNANRLIFPGVGAFAAAMDV---LNKTG-MAEALCAYIEKDRPF 123 (578)
Q Consensus 54 d~~~g~~~~i~~~L~~~Gv~v~~v~~~~------dl~~~DGlILpGGg~~~~~~~~---l~~~~-l~~~i~~~~~~g~PI 123 (578)
..|+.+-.++.++|+++|+++.+++..+ ++.++|+||||||..+.+.+.. ..... +.+.++++.+.++|+
T Consensus 6 ~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pv 85 (238)
T cd01740 6 FPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLV 85 (238)
T ss_pred cCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCCeE
Confidence 3457788899999999999988876532 4678999999999654333210 11112 678899999999999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCccee---eeEEEEEcc-CCcccccC-C--CeEEEEEeeee
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQI---GWNALQITK-DSEILDDV-G--DHHVYFVHSYR 196 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~---G~~~i~~~~-~~~l~~~l-~--~~~~~~~H~~~ 196 (578)
+|||.|+|+|+. +|+++++.+..... ..... .|..+.+.. ++.+++.+ + .+.++..|...
T Consensus 86 lGIC~G~QlL~~----------~gll~g~~~~~~~~---~~~~~~~~~~v~~~v~~~~si~t~~~~~g~~l~~~vaHgeG 152 (238)
T cd01740 86 LGICNGFQILVE----------LGLLPGALIRNKGL---KFICRWQNRFVTLRVENNDSPFTKGYMEGEVLRIPVAHGEG 152 (238)
T ss_pred EEECcHHHHHHH----------cCCCccccccCCCC---ceeccccCceEEEEEcCCCCceecCCCCCCEEEEEeECCce
Confidence 999999999998 34555555432110 00000 123444433 34555542 2 35556666653
Q ss_pred eecCCC-------CCCcEEEEee-----------cCCc---eEEEEE--eCCEEEEeeCCccc
Q 045794 197 AMPSDD-------NKEWVSSTCN-----------YGDN---FIASVR--RGNVHAVQFHPEKS 236 (578)
Q Consensus 197 v~~~~~-------~~~~~~~~~~-----------~~d~---~iegi~--~~~i~gvQFHPE~~ 236 (578)
-...+. ....+..... ..++ -|+|+. +++++|...|||..
T Consensus 153 ~~~~~~~~~~~l~~~~~i~~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~GrvlglMphPer~ 215 (238)
T cd01740 153 RFYADDETLAELEENGQIAQYVDDDGNVTERYPANPNGSLDGIAGICNEDGRVLGMMPHPERA 215 (238)
T ss_pred eeEcCHHHHHHHHHCCCEEEEEcCCCCccccCCCCCCCChhcceEEEcCCCCEEEEcCChHHc
Confidence 221110 0111110100 1223 366776 47999999999985
No 136
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.27 E-value=1.6e-11 Score=126.94 Aligned_cols=84 Identities=26% Similarity=0.326 Sum_probs=57.8
Q ss_pred cEEEEEECCC---CCHHHHHHHHHHCC------CeEEEeCCc------------------cCCCCCCEEEECCCCCchHH
Q 045794 48 SVVTLLDYGA---GNVRSVRNAIRHLG------FGIKDVQTP------------------EDILNANRLIFPGVGAFAAA 100 (578)
Q Consensus 48 ~~I~vld~~~---g~~~~i~~~L~~~G------v~v~~v~~~------------------~dl~~~DGlILpGGg~~~~~ 100 (578)
.+|+++.=.. ....++.++|+.++ .++.+++.. +.+..+|||++|||-..
T Consensus 299 V~IalVGKYt~l~DsY~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~--- 375 (585)
T KOG2387|consen 299 VRIALVGKYTKLSDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGD--- 375 (585)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccc---
Confidence 5688875322 24446677777655 466666541 12577999999998311
Q ss_pred HHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhc
Q 045794 101 MDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSS 137 (578)
Q Consensus 101 ~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~ 137 (578)
...+ +....++++.++++|+||||||||+-+..+
T Consensus 376 -RGve--G~i~Aak~ARen~iP~LGiCLGmQ~AvIEf 409 (585)
T KOG2387|consen 376 -RGVE--GKILAAKWARENKIPFLGICLGMQLAVIEF 409 (585)
T ss_pred -cchh--HHHHHHHHHHhcCCCeEeeehhhhHHHHHH
Confidence 1112 567788889999999999999999987754
No 137
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=99.23 E-value=7.1e-10 Score=112.49 Aligned_cols=185 Identities=23% Similarity=0.229 Sum_probs=136.2
Q ss_pred cCCHHHHHHHHHHcCCCeEEE-EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISF-LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~-~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
..+|.++|+.|.+.||+.|.+ .|-+-+ +-+++.|+.+++.+.+||.. .| ||++.. .+.+..
T Consensus 69 ~~~~~~~A~~~~~~GA~aisvlte~~~f-------~g~~~~l~~v~~~v~iPvl~-------kd---fi~~~~-qi~~a~ 130 (260)
T PRK00278 69 DFDPVEIAKAYEAGGAACLSVLTDERFF-------QGSLEYLRAARAAVSLPVLR-------KD---FIIDPY-QIYEAR 130 (260)
T ss_pred CCCHHHHHHHHHhCCCeEEEEecccccC-------CCCHHHHHHHHHhcCCCEEe-------ee---ecCCHH-HHHHHH
Confidence 459999999999999999876 344433 12378888888889999973 33 899999 699999
Q ss_pred HcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
++|||.|.+....+. +..+ .++++.+ +.+|-+ ++ +|+.+
T Consensus 131 ~~GAD~VlLi~~~l~-~~~l--------~~li~~a-~~lGl~-~l--vevh~---------------------------- 169 (260)
T PRK00278 131 AAGADAILLIVAALD-DEQL--------KELLDYA-HSLGLD-VL--VEVHD---------------------------- 169 (260)
T ss_pred HcCCCEEEEEeccCC-HHHH--------HHHHHHH-HHcCCe-EE--EEeCC----------------------------
Confidence 999999999776654 2222 2455554 456733 33 33221
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~ 542 (578)
.+-++++.+.|++-|-++.++.. -..+|++...++.+.. ..|+|+.|||.+++|+.++.+
T Consensus 170 ----------------~~E~~~A~~~gadiIgin~rdl~--~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~ 231 (260)
T PRK00278 170 ----------------EEELERALKLGAPLIGINNRNLK--TFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAK 231 (260)
T ss_pred ----------------HHHHHHHHHcCCCEEEECCCCcc--cccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHH
Confidence 22335677889998888866543 3468899999988765 369999999999999999996
Q ss_pred hcCchHHhhhhhhccCCCCHHHHHHH
Q 045794 543 KTNASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
.|+++|+||+++...+.+-+.++++
T Consensus 232 -~Gad~vlVGsaI~~~~dp~~~~~~l 256 (260)
T PRK00278 232 -AGADAVLVGESLMRADDPGAALREL 256 (260)
T ss_pred -cCCCEEEECHHHcCCCCHHHHHHHH
Confidence 8999999999999777655555443
No 138
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.22 E-value=2.1e-10 Score=113.47 Aligned_cols=188 Identities=20% Similarity=0.208 Sum_probs=128.8
Q ss_pred EEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 303 VRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 303 ~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+....++.++|+.+.+.|+.-+-+ + ..+.++++++.+.+|+.. -=-+.+++.+..++++++.++.
T Consensus 23 ~~~~~~i~~~a~~~~~~G~~~~~~---~-----------~~~~~~~i~~~~~iPil~-~~~~~~~~~~~~ig~~~~~~~~ 87 (219)
T cd04729 23 LHSPEIMAAMALAAVQGGAVGIRA---N-----------GVEDIRAIRARVDLPIIG-LIKRDYPDSEVYITPTIEEVDA 87 (219)
T ss_pred cCcHHHHHHHHHHHHHCCCeEEEc---C-----------CHHHHHHHHHhCCCCEEE-EEecCCCCCCceeCCCHHHHHH
Confidence 333457889999999999975432 1 135566666667899842 0012333334567888899999
Q ss_pred HHHcCcceeecchhhhccch-hhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 383 YFRSGADKISIGSDAVYAAE-DYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
+.++||+.|++.......+. +. ..++++++.+.+ .-.+++ ++
T Consensus 88 a~~aGad~I~~~~~~~~~p~~~~-------~~~~i~~~~~~g-~~~iiv--~v--------------------------- 130 (219)
T cd04729 88 LAAAGADIIALDATDRPRPDGET-------LAELIKRIHEEY-NCLLMA--DI--------------------------- 130 (219)
T ss_pred HHHcCCCEEEEeCCCCCCCCCcC-------HHHHHHHHHHHh-CCeEEE--EC---------------------------
Confidence 99999998888754443221 01 135666665544 222222 21
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC---CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG---QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFS 538 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG---~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~ 538 (578)
...+.+..+.+.|++.+.++.....+ ...+++++.++++++.+++||++.|||++.+|+.
T Consensus 131 -----------------~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~ 193 (219)
T cd04729 131 -----------------STLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAA 193 (219)
T ss_pred -----------------CCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHH
Confidence 11345688889999988764333222 2346789999999998899999999999999999
Q ss_pred HHHHhcCchHHhhhhhhccCCC
Q 045794 539 DVFRKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~ 560 (578)
++++ .|++||++|+++.....
T Consensus 194 ~~l~-~GadgV~vGsal~~~~~ 214 (219)
T cd04729 194 KALE-LGADAVVVGSAITRPEH 214 (219)
T ss_pred HHHH-CCCCEEEEchHHhChHh
Confidence 9996 89999999999986543
No 139
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.20 E-value=1.8e-10 Score=120.55 Aligned_cols=96 Identities=22% Similarity=0.219 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 477 PIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 477 ~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
..++.++++.+++.|++.|.+|.+++.+.+.|+ +++.++++++.+++|||++|||.+.+|+.++++..|||+|++|+++
T Consensus 146 ~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~ 225 (319)
T TIGR00737 146 HINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGA 225 (319)
T ss_pred cchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhh
Confidence 446789999999999999999998888777764 9999999999999999999999999999999976899999999999
Q ss_pred ccCCCCHHHHHHHHHhC
Q 045794 556 HRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 556 ~~~~~~~~~~~~~l~~~ 572 (578)
..+++.+.++++++...
T Consensus 226 l~~P~l~~~~~~~~~~~ 242 (319)
T TIGR00737 226 LGNPWLFRQIEQYLTTG 242 (319)
T ss_pred hhCChHHHHHHHHHhCC
Confidence 99999999998888654
No 140
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.19 E-value=1.7e-10 Score=119.85 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCC--CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGF--DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~--d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
..++++.+++.|++.|.+|..++.+.++|+ ||+.++++++.+++|||++|||.+++|+.++++.+|||+||+|+++..
T Consensus 150 ~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~ 229 (312)
T PRK10550 150 KFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALN 229 (312)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHh
Confidence 679999999999999999999998888885 899999999999999999999999999999998799999999999999
Q ss_pred CCCCHHHHHH
Q 045794 558 KEVPIQSVKE 567 (578)
Q Consensus 558 ~~~~~~~~~~ 567 (578)
+++.+.++++
T Consensus 230 nP~lf~~~~~ 239 (312)
T PRK10550 230 IPNLSRVVKY 239 (312)
T ss_pred CcHHHHHhhc
Confidence 9998887653
No 141
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.19 E-value=1e-10 Score=116.45 Aligned_cols=89 Identities=28% Similarity=0.293 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCC-CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDG-QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG-~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+..++++.+++.|++.|.++..++++ ...+.+++.++++++.+++||+++|||.+++|+.++++..||++|++|+++..
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 139 ETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 57899999999999999999998776 44467999999999999999999999999999999997569999999999999
Q ss_pred CCCCHHHHHH
Q 045794 558 KEVPIQSVKE 567 (578)
Q Consensus 558 ~~~~~~~~~~ 567 (578)
+++.+..+++
T Consensus 219 ~P~~~~~~~~ 228 (231)
T cd02801 219 NPWLFREIKE 228 (231)
T ss_pred CCHHHHhhhh
Confidence 9988777654
No 142
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.17 E-value=6.4e-10 Score=111.19 Aligned_cols=178 Identities=13% Similarity=0.114 Sum_probs=127.5
Q ss_pred HHHHHHHHcCCCeEEE-----EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 311 ELARQYYKEGADEISF-----LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~-----~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
|.|+.-++.||-.++. .|+-+. |...|.++.+.|++|.+.+.+||+ |+-.... +..++.|.+
T Consensus 21 eqa~iae~aga~avm~le~~p~d~r~~--ggv~R~~~p~~I~~I~~~V~iPVi---g~~kigh--------~~Ea~~L~~ 87 (287)
T TIGR00343 21 EQAKIAEEAGAVAVMALERVPADIRAS--GGVARMSDPKMIKEIMDAVSIPVM---AKVRIGH--------FVEAQILEA 87 (287)
T ss_pred HHHHHHHHcCceEEEeeccCchhhHhc--CCeeecCCHHHHHHHHHhCCCCEE---EEeeccH--------HHHHHHHHH
Confidence 8899999999999998 466442 335678889999999999999997 4433321 466999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|+|.|- .|.-.+ |. .+++..+..+| .. .+.-|+++
T Consensus 88 ~GvDiID-eTe~lr-Pa----------de~~~~~K~~f-~v--pfmad~~~----------------------------- 123 (287)
T TIGR00343 88 LGVDYID-ESEVLT-PA----------DWTFHIDKKKF-KV--PFVCGARD----------------------------- 123 (287)
T ss_pred cCCCEEE-ccCCCC-cH----------HHHHHHHHHHc-CC--CEEccCCC-----------------------------
Confidence 9999883 333333 31 26678888888 33 33334432
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC--------------------------------CCCCCCCHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD--------------------------------GQGKGFDMDL 513 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d--------------------------------G~~~G~d~~l 513 (578)
++-+.+..+.|++.|=-|.-.-. -...++++++
T Consensus 124 ---------------l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~el 188 (287)
T TIGR00343 124 ---------------LGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVEL 188 (287)
T ss_pred ---------------HHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHH
Confidence 33444444556655543311111 1123689999
Q ss_pred HHHHHhhCCCcEE--EecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCC
Q 045794 514 IKLISDAVSIPVI--ASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 514 i~~l~~~~~ipVI--asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~ 561 (578)
++++++..++||+ +.|||.+++|+..+++ .||+||+|||++....-+
T Consensus 189 Lkei~~~~~iPVV~fAiGGI~TPedAa~~me-lGAdGVaVGSaI~ks~dP 237 (287)
T TIGR00343 189 LLEVLKLGKLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFKSSNP 237 (287)
T ss_pred HHHHHHhCCCCEEEeccCCCCCHHHHHHHHH-cCCCEEEEhHHhhcCCCH
Confidence 9999998899998 9999999999999996 999999999999765443
No 143
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=99.17 E-value=9.1e-11 Score=117.19 Aligned_cols=98 Identities=27% Similarity=0.379 Sum_probs=84.8
Q ss_pred eEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH
Q 045794 269 RVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL 348 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~ 348 (578)
+++++||++ +|++. +. . ...+|.++++.|++. ++++|++|+++. +. ..+.|++++++
T Consensus 127 ~iivslD~~---~~~~~----~~-----------~-~~~~~~~~~~~~~~~-~~~li~~di~~~--G~-~~g~~~~~~~~ 183 (233)
T cd04723 127 RLVLSLDFR---GGQLL----KP-----------T-DFIGPEELLRRLAKW-PEELIVLDIDRV--GS-GQGPDLELLER 183 (233)
T ss_pred CeEEEEecc---CCeec----cc-----------c-CcCCHHHHHHHHHHh-CCeEEEEEcCcc--cc-CCCcCHHHHHH
Confidence 799999999 67532 11 1 246999999999999 999999999984 33 35889999999
Q ss_pred HhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 349 TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 349 i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+++.+++|+++||||++.+| +++++++|++.|++||++...
T Consensus 184 i~~~~~ipvi~~GGi~s~ed-----------i~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 184 LAARADIPVIAAGGVRSVED-----------LELLKKLGASGALVASALHDG 224 (233)
T ss_pred HHHhcCCCEEEeCCCCCHHH-----------HHHHHHcCCCEEEEehHHHcC
Confidence 99999999999999999977 999999999999999999874
No 144
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.16 E-value=4.8e-11 Score=124.10 Aligned_cols=87 Identities=23% Similarity=0.237 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 478 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 478 ~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
.+..++++.+++.|++.|++|.+++...++|+ ||+.++++++.+++|||++|||.+.+|+.++++.+||+|||+|+++.
T Consensus 138 ~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal 217 (309)
T PF01207_consen 138 EETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGAL 217 (309)
T ss_dssp HHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHC
T ss_pred hHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhh
Confidence 35799999999999999999999999999986 99999999999999999999999999999999878999999999999
Q ss_pred cCCCCHHH
Q 045794 557 RKEVPIQS 564 (578)
Q Consensus 557 ~~~~~~~~ 564 (578)
.+++.|.+
T Consensus 218 ~nP~lf~~ 225 (309)
T PF01207_consen 218 GNPWLFRE 225 (309)
T ss_dssp C-CCHHCH
T ss_pred hcCHHhhh
Confidence 99999885
No 145
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.15 E-value=1.4e-09 Score=109.80 Aligned_cols=176 Identities=22% Similarity=0.382 Sum_probs=99.8
Q ss_pred CcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCC------ccCCCCCCEEEECCCCCchHHHH---HHH-----hhcHHH
Q 045794 47 DSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQT------PEDILNANRLIFPGVGAFAAAMD---VLN-----KTGMAE 111 (578)
Q Consensus 47 ~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~------~~dl~~~DGlILpGGg~~~~~~~---~l~-----~~~l~~ 111 (578)
+++|+|+-++ +..-.+...+|+..|+++..+.. ..++.++|+|+||||-++.+.+. ... ...+.+
T Consensus 1 kpkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~ 80 (259)
T PF13507_consen 1 KPKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMD 80 (259)
T ss_dssp --EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHH
Confidence 4678888654 55777899999999999887643 23689999999999965554321 111 135688
Q ss_pred HHHHHHhC-CCCEEEEechHHHHhhhcccCCCcCCCcccCc----------eeeeecCCCCCCcceeeeEEEEEccCCc-
Q 045794 112 ALCAYIEK-DRPFLGICLGLQLLFQSSEENGPVNGLGLIPG----------VVGRFDSSNGFRVPQIGWNALQITKDSE- 179 (578)
Q Consensus 112 ~i~~~~~~-g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~----------~v~~~~~~~~~~~~~~G~~~i~~~~~~~- 179 (578)
.+++++++ ++|+||||-|||+|.+ +|++|+ ..++ +. .. .-+-.|..+.+...++
T Consensus 81 ~i~~f~~~~g~~vLGIcNGfQiL~~----------~Gllp~~~~~~~~~~~~L~~--N~-s~-~fe~rwv~~~v~~~s~~ 146 (259)
T PF13507_consen 81 AIREFLERPGGFVLGICNGFQILVE----------LGLLPGGEIKDSEQSPALTP--NA-SG-RFESRWVNLVVNENSPS 146 (259)
T ss_dssp HHHHHHHCTT-EEEEECHHHHHHCC----------CCCSTT------TT--EEE----T-TS-S-EEEEEEEEE--SSTT
T ss_pred HHHHHHhcCCCeEEEEchHhHHHHH----------hCcCCCccccccCCCcEEcC--CC-CC-CeEEEEEEEEEecCCcc
Confidence 89999998 9999999999999998 456776 3222 11 11 1122466665534443
Q ss_pred -ccccCCCeEEEEEeeeeeecC-C-------CCCCcEEEEeec------------CC---ceEEEEE--eCCEEEEeeCC
Q 045794 180 -ILDDVGDHHVYFVHSYRAMPS-D-------DNKEWVSSTCNY------------GD---NFIASVR--RGNVHAVQFHP 233 (578)
Q Consensus 180 -l~~~l~~~~~~~~H~~~v~~~-~-------~~~~~~~~~~~~------------~d---~~iegi~--~~~i~gvQFHP 233 (578)
.++.+.....---|...-... + .....+...... .+ .-|+|+. +++++|...||
T Consensus 147 ~~~~~~~~~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NPNGS~~~IAGics~~GrvlglMpHP 226 (259)
T PF13507_consen 147 IFLRGLEGIVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNPNGSVNNIAGICSPDGRVLGLMPHP 226 (259)
T ss_dssp CCCTTTTCEEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSSS--GGGEEEEE-TTSSEEEESSBC
T ss_pred eecCCCCEEEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCCCCCccceeEEEcCCCCEEEEcCCh
Confidence 334444333334444332222 1 112222222111 11 3477887 47999999999
Q ss_pred ccc
Q 045794 234 EKS 236 (578)
Q Consensus 234 E~~ 236 (578)
|..
T Consensus 227 Er~ 229 (259)
T PF13507_consen 227 ERA 229 (259)
T ss_dssp CGT
T ss_pred HHh
Confidence 984
No 146
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.14 E-value=1.5e-09 Score=111.43 Aligned_cols=182 Identities=13% Similarity=0.058 Sum_probs=101.2
Q ss_pred CcEEEEEECCCCCHH----HHHHHHHHCC--CeEEEeCCc-------------------cCC--CCCCEEEECCCCC---
Q 045794 47 DSVVTLLDYGAGNVR----SVRNAIRHLG--FGIKDVQTP-------------------EDI--LNANRLIFPGVGA--- 96 (578)
Q Consensus 47 ~~~I~vld~~~g~~~----~i~~~L~~~G--v~v~~v~~~-------------------~dl--~~~DGlILpGGg~--- 96 (578)
..+|+|+++ +-.+. .+.|.|.... +++.++... +++ .+|||+||+|+..
T Consensus 35 pl~i~ilNl-Mp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~ 113 (302)
T PRK05368 35 PLKILILNL-MPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQL 113 (302)
T ss_pred CccEEEEeC-CCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCc
Confidence 367999997 43333 3444454333 345544321 112 4799999999852
Q ss_pred -chHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEc
Q 045794 97 -FAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQIT 175 (578)
Q Consensus 97 -~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~ 175 (578)
+.+...|.+ +.+.+.++.+..+|+||||+|+|+++.++ .| + .+. ......+|.....++
T Consensus 114 ~fedv~YW~E---l~~i~~w~~~~~~s~LgICwGaQa~a~al------gG--i--~k~-------~~~~K~~Gv~~~~~~ 173 (302)
T PRK05368 114 PFEDVDYWDE---LKEILDWAKTHVTSTLFICWAAQAALYHL------YG--I--PKY-------TLPEKLSGVFEHRVL 173 (302)
T ss_pred cCCCCchHHH---HHHHHHHHHHcCCCEEEEcHHHHHHHHHc------CC--C--ccC-------CCCCceeEEEEEEEc
Confidence 222222322 33444444456899999999999999852 11 1 111 112235665554443
Q ss_pred -cCCcccccCC-CeEEEEEeeeeeec--CCCCCCc-EEEEeecCCceEEEEE--eCCEEEEeeCCcccCcchHHHHHHHh
Q 045794 176 -KDSEILDDVG-DHHVYFVHSYRAMP--SDDNKEW-VSSTCNYGDNFIASVR--RGNVHAVQFHPEKSGDVGLSVLRRFL 248 (578)
Q Consensus 176 -~~~~l~~~l~-~~~~~~~H~~~v~~--~~~~~~~-~~~~~~~~d~~iegi~--~~~i~gvQFHPE~~~~~~~~l~~~Fl 248 (578)
..++++++++ .+.+.+.|...+.. +...... +++.+ ...-++++. ..+++++|+|||++.. .|.+.+.
T Consensus 174 ~~~~pL~~g~~d~F~~phSr~~~V~~~~i~~~~~l~vLA~S--~~~gv~~~~~~~~r~~~vQgHPEYd~~---tL~~EY~ 248 (302)
T PRK05368 174 DPHHPLLRGFDDSFLVPHSRYTEVREEDIRAATGLEILAES--EEAGVYLFASKDKREVFVTGHPEYDAD---TLAQEYF 248 (302)
T ss_pred CCCChhhcCCCCccccceeehhhccHHHhccCCCCEEEecC--CCCCeEEEEeCCCCEEEEECCCCCCHH---HHHHHHH
Confidence 4568888877 56666666555531 2122222 22222 122245564 4479999999999653 4666666
Q ss_pred hhccCC
Q 045794 249 HPKTNI 254 (578)
Q Consensus 249 ~~~~~~ 254 (578)
+-+...
T Consensus 249 RD~~~~ 254 (302)
T PRK05368 249 RDLGAG 254 (302)
T ss_pred HHHhCC
Confidence 554433
No 147
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.13 E-value=1.9e-10 Score=114.80 Aligned_cols=103 Identities=20% Similarity=0.199 Sum_probs=89.8
Q ss_pred eEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH
Q 045794 269 RVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL 348 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~ 348 (578)
+|+.+||.+ +|+ ++++||. +.. ..+|.++++.+.+.|+.++++.|++. +|+ ..+.|++++++
T Consensus 125 ~ivvslD~~---~g~-v~~~gw~----------~~~-~~~~~~~~~~~~~~g~~~ii~tdi~~--dGt-~~G~~~~li~~ 186 (234)
T PRK13587 125 RIYLSVDAY---GED-IKVNGWE----------EDT-ELNLFSFVRQLSDIPLGGIIYTDIAK--DGK-MSGPNFELTGQ 186 (234)
T ss_pred CEEEEEEee---CCE-EEecCCc----------ccC-CCCHHHHHHHHHHcCCCEEEEecccC--cCC-CCccCHHHHHH
Confidence 689999999 786 5789986 222 36999999999999999999999986 343 34889999999
Q ss_pred HhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 349 TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 349 i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+++.+.+|++++|||++.+| +++++++|++.|++||++.+.
T Consensus 187 l~~~~~ipvi~~GGi~s~ed-----------i~~l~~~G~~~vivG~a~~~~ 227 (234)
T PRK13587 187 LVKATTIPVIASGGIRHQQD-----------IQRLASLNVHAAIIGKAAHQA 227 (234)
T ss_pred HHHhCCCCEEEeCCCCCHHH-----------HHHHHHcCCCEEEEhHHHHhC
Confidence 99989999999999999977 999999999999999999873
No 148
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.10 E-value=3.5e-10 Score=112.76 Aligned_cols=105 Identities=18% Similarity=0.219 Sum_probs=88.1
Q ss_pred EcccccCC---CCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 045794 469 VNGGREGR---PIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTN 545 (578)
Q Consensus 469 ~~g~~~~~---~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G 545 (578)
++||++.. ..++.++++.+++.|++++.+.|.+......+.|+++++++++.+++|+.++|||++.+|++++++ .|
T Consensus 16 ~~G~~~~~~~~~~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~-~G 94 (230)
T TIGR00007 16 YQGDYDKETVYGDDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLD-LG 94 (230)
T ss_pred eccccCcceEecCCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHH-cC
Confidence 56776654 458999999999999999999888776556777999999999999999999999999999999996 99
Q ss_pred chHHhhhhhhccCCCCHHHHHHHHHhCCC
Q 045794 546 ASAALAAGIFHRKEVPIQSVKEHLYKEGI 574 (578)
Q Consensus 546 ~~gv~vgsa~~~~~~~~~~~~~~l~~~~i 574 (578)
|+++++|+++...+-.+.++.+.+..+.+
T Consensus 95 a~~vvlgs~~l~d~~~~~~~~~~~g~~~i 123 (230)
T TIGR00007 95 VDRVIIGTAAVENPDLVKELLKEYGPERI 123 (230)
T ss_pred CCEEEEChHHhhCHHHHHHHHHHhCCCcE
Confidence 99999999988765556666666554434
No 149
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.10 E-value=4.6e-10 Score=112.70 Aligned_cols=104 Identities=26% Similarity=0.349 Sum_probs=88.6
Q ss_pred eEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH
Q 045794 269 RVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL 348 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~ 348 (578)
+++|++|++ +|+| +++||..+ . ..+|+++++.+.+.|++++++.|++.. +.. .+.+++++++
T Consensus 126 ~i~~sid~~---~~~v-~~~g~~~~----------~-~~~~~~~~~~~~~~G~~~i~~~~~~~~--g~~-~g~~~~~i~~ 187 (241)
T PRK13585 126 RVMVSLDAK---DGEV-VIKGWTEK----------T-GYTPVEAAKRFEELGAGSILFTNVDVE--GLL-EGVNTEPVKE 187 (241)
T ss_pred cEEEEEEee---CCEE-EECCCccc----------C-CCCHHHHHHHHHHcCCCEEEEEeecCC--CCc-CCCCHHHHHH
Confidence 789999999 7885 57888621 1 249999999999999999999999642 222 3678999999
Q ss_pred HhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccc
Q 045794 349 TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAA 401 (578)
Q Consensus 349 i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~ 401 (578)
+++.+.+|++++|||++.+| ++++++.||+.|++||+++.++
T Consensus 188 i~~~~~iPvia~GGI~~~~d-----------i~~~~~~Ga~gv~vgsa~~~~~ 229 (241)
T PRK13585 188 LVDSVDIPVIASGGVTTLDD-----------LRALKEAGAAGVVVGSALYKGK 229 (241)
T ss_pred HHHhCCCCEEEeCCCCCHHH-----------HHHHHHcCCCEEEEEHHHhcCC
Confidence 99999999999999999977 8899999999999999999863
No 150
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.09 E-value=7.6e-10 Score=111.00 Aligned_cols=178 Identities=15% Similarity=0.136 Sum_probs=125.2
Q ss_pred HHHHHHHHcCCCeEEE-----EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 311 ELARQYYKEGADEISF-----LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~-----~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
+.|+.-++.|++++.+ -|.-. .+...+....+.|++|.+.+.+||+ |+-.... +..++.|.+
T Consensus 28 ~~a~iae~~g~~~v~~~~~~psd~~~--~gg~~Rm~~p~~I~aIk~~V~iPVi---gk~Righ--------~~Ea~~L~~ 94 (293)
T PRK04180 28 EQAKIAEEAGAVAVMALERVPADIRA--AGGVARMADPKMIEEIMDAVSIPVM---AKARIGH--------FVEAQILEA 94 (293)
T ss_pred HHHHHHHHhChHHHHHccCCCchHhh--cCCeeecCCHHHHHHHHHhCCCCeE---EeehhhH--------HHHHHHHHH
Confidence 7888888999999987 35432 2334567778999999999999998 4433321 456999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|+|.|- .|.-++ |. .+++..+..+|. +.+.-|+++
T Consensus 95 ~GvDiID-~Te~lr-pa----------d~~~~~~K~~f~---~~fmad~~~----------------------------- 130 (293)
T PRK04180 95 LGVDYID-ESEVLT-PA----------DEEYHIDKWDFT---VPFVCGARN----------------------------- 130 (293)
T ss_pred cCCCEEe-ccCCCC-ch----------HHHHHHHHHHcC---CCEEccCCC-----------------------------
Confidence 9999884 443333 31 266788888892 344445443
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe--------------------------ccCCCC-----CCCCCCHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLN--------------------------CIDCDG-----QGKGFDMDLI 514 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t--------------------------di~~dG-----~~~G~d~~li 514 (578)
++-+.+..+.|++.|=-| ..+.+. ...+++++++
T Consensus 131 ---------------l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL 195 (293)
T PRK04180 131 ---------------LGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELV 195 (293)
T ss_pred ---------------HHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHH
Confidence 333444444555544433 111111 1257899999
Q ss_pred HHHHhhCCCcEE--EecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCC
Q 045794 515 KLISDAVSIPVI--ASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 515 ~~l~~~~~ipVI--asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~ 561 (578)
+++++..++||+ +.|||.+++|+..+++ +||++|+|||++....-+
T Consensus 196 ~ei~~~~~iPVV~~AeGGI~TPedaa~vme-~GAdgVaVGSaI~ks~dP 243 (293)
T PRK04180 196 KEVAELGRLPVVNFAAGGIATPADAALMMQ-LGADGVFVGSGIFKSGDP 243 (293)
T ss_pred HHHHHhCCCCEEEEEeCCCCCHHHHHHHHH-hCCCEEEEcHHhhcCCCH
Confidence 999999899998 9999999999999996 999999999999755443
No 151
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=99.09 E-value=4.4e-10 Score=110.18 Aligned_cols=103 Identities=25% Similarity=0.393 Sum_probs=91.9
Q ss_pred eEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH
Q 045794 269 RVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL 348 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~ 348 (578)
||+.+||.+ +|+ ++++||+ +.+. -+|.+++++|.+.|+.++++.|++. +|.. .++|.+++++
T Consensus 124 rivv~lD~r---~g~-vav~GW~----------e~s~-~~~~~l~~~~~~~g~~~ii~TdI~~--DGtl-~G~n~~l~~~ 185 (241)
T COG0106 124 RIVVALDAR---DGK-VAVSGWQ----------EDSG-VELEELAKRLEEVGLAHILYTDISR--DGTL-SGPNVDLVKE 185 (241)
T ss_pred cEEEEEEcc---CCc-ccccccc----------cccc-CCHHHHHHHHHhcCCCeEEEEeccc--cccc-CCCCHHHHHH
Confidence 899999999 888 4999998 3332 4999999999999999999999987 4554 4899999999
Q ss_pred HhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc-Ccceeecchhhhcc
Q 045794 349 TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS-GADKISIGSDAVYA 400 (578)
Q Consensus 349 i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~-Ga~~vv~gt~~~~~ 400 (578)
+++.+.+|+++.|||+|.+| ++.+.+. |+.-+|+|++.+..
T Consensus 186 l~~~~~ipviaSGGv~s~~D-----------i~~l~~~~G~~GvIvG~ALy~g 227 (241)
T COG0106 186 LAEAVDIPVIASGGVSSLDD-----------IKALKELSGVEGVIVGRALYEG 227 (241)
T ss_pred HHHHhCcCEEEecCcCCHHH-----------HHHHHhcCCCcEEEEehHHhcC
Confidence 99999999999999999987 9999999 99999999999984
No 152
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1e-09 Score=112.52 Aligned_cols=84 Identities=24% Similarity=0.327 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCC--CCC-CHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCchHHhhhhh
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQG--KGF-DMDLIKLISDAVS-IPVIASSGAGAVEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~--~G~-d~~li~~l~~~~~-ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa 554 (578)
+.+++++.+++.|++.+++|.++++... .|+ ||+.|+.+++.+. +||||+|+|.+.+|+..+++.+|++|||+|++
T Consensus 156 kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arg 235 (358)
T KOG2335|consen 156 KTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARG 235 (358)
T ss_pred HHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecch
Confidence 4689999999999999999999998775 676 9999999999987 99999999999999999998899999999999
Q ss_pred hccCCCCH
Q 045794 555 FHRKEVPI 562 (578)
Q Consensus 555 ~~~~~~~~ 562 (578)
+..++..|
T Consensus 236 lL~NPa~F 243 (358)
T KOG2335|consen 236 LLYNPALF 243 (358)
T ss_pred hhcCchhh
Confidence 99998877
No 153
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.03 E-value=8.2e-10 Score=110.57 Aligned_cols=103 Identities=22% Similarity=0.208 Sum_probs=89.6
Q ss_pred eEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH
Q 045794 269 RVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL 348 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~ 348 (578)
+++.+||.+ +|+ |+++||. +.. .-+|+++++.+.+.|+.++++.|++. +|+ .+++|++++++
T Consensus 121 ~ivvslD~k---~g~-v~~~gw~----------~~~-~~~~~e~~~~~~~~g~~~ii~tdI~r--dGt-~~G~d~el~~~ 182 (241)
T PRK14114 121 EPVFSLDTR---GGK-VAFKGWL----------AEE-EIDPVSLLKRLKEYGLEEIVHTEIEK--DGT-LQEHDFSLTRK 182 (241)
T ss_pred CEEEEEEcc---CCE-EeeCCCe----------ecC-CCCHHHHHHHHHhcCCCEEEEEeech--hhc-CCCcCHHHHHH
Confidence 689999999 787 6789986 222 25999999999999999999999987 344 35899999999
Q ss_pred HhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc-----C-cceeecchhhhcc
Q 045794 349 TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS-----G-ADKISIGSDAVYA 400 (578)
Q Consensus 349 i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~-----G-a~~vv~gt~~~~~ 400 (578)
+++.+.+||+++||+++.+| ++++.++ | ++.+++|++..+.
T Consensus 183 l~~~~~~pviasGGv~s~~D-----------l~~l~~~~~~~~g~v~gvivg~Al~~g 229 (241)
T PRK14114 183 IAIEAEVKVFAAGGISSENS-----------LKTAQRVHRETNGLLKGVIVGRAFLEG 229 (241)
T ss_pred HHHHCCCCEEEECCCCCHHH-----------HHHHHhcccccCCcEEEEEEehHHHCC
Confidence 99999999999999999987 8888886 6 9999999998874
No 154
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=99.02 E-value=1.2e-09 Score=105.17 Aligned_cols=182 Identities=23% Similarity=0.303 Sum_probs=96.4
Q ss_pred CCCcEEEEEE-------------CCCC-CHHHHHHHHHHCCCeEEEeCCc--cC-----CCCCCEEEECCCCCchHHHHH
Q 045794 45 SSDSVVTLLD-------------YGAG-NVRSVRNAIRHLGFGIKDVQTP--ED-----ILNANRLIFPGVGAFAAAMDV 103 (578)
Q Consensus 45 ~~~~~I~vld-------------~~~g-~~~~i~~~L~~~Gv~v~~v~~~--~d-----l~~~DGlILpGGg~~~~~~~~ 103 (578)
+-+|+|+|+- ++.. ..+++++.++..|++|..+... ++ ++-.+|||++||..-..+...
T Consensus 50 nykPvIGIL~hpg~g~~~rl~n~t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwak~~dY~~ 129 (340)
T KOG1559|consen 50 NYKPVIGILSHPGDGASGRLKNATGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWAKRGDYFE 129 (340)
T ss_pred ccCceeEEeccCCCCccceeccccCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcccccccHHH
Confidence 4688999983 2222 3457899999999998766543 22 567999999998422112212
Q ss_pred HHhhcHHHHHHHHHhC--CCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCC-CCCcceeeeEEEEEc----c
Q 045794 104 LNKTGMAEALCAYIEK--DRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSN-GFRVPQIGWNALQIT----K 176 (578)
Q Consensus 104 l~~~~l~~~i~~~~~~--g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~-~~~~~~~G~~~i~~~----~ 176 (578)
+.. .+.....+-.+. .+||+|||+||.+|...+.++.. ++. +|+..+ .......|-.++.-+ -
T Consensus 130 vvk-kifnk~le~nDaGehFPvyg~CLGFE~lsmiISqnrd-----ile----~~d~vd~AssLqF~~nvn~~~t~FQrF 199 (340)
T KOG1559|consen 130 VVK-KIFNKVLERNDAGEHFPVYGICLGFELLSMIISQNRD-----ILE----RFDAVDVASSLQFVGNVNIHGTMFQRF 199 (340)
T ss_pred HHH-HHHHHHHhccCCccccchhhhhhhHHHHHHHHhcChh-----HHH----hhcccccccceeeecccceeehhHhhC
Confidence 211 223333333333 39999999999999987543311 100 010000 000001111111111 0
Q ss_pred CCcccccCC-CeEEEEEeeeeeecCCCCC-----CcE-EEEee-cC--CceEEEEE--eCCEEEEeeCCccc
Q 045794 177 DSEILDDVG-DHHVYFVHSYRAMPSDDNK-----EWV-SSTCN-YG--DNFIASVR--RGNVHAVQFHPEKS 236 (578)
Q Consensus 177 ~~~l~~~l~-~~~~~~~H~~~v~~~~~~~-----~~~-~~~~~-~~--d~~iegi~--~~~i~gvQFHPE~~ 236 (578)
...+++.+. ...+.++|.+...+..... .++ ..+.. .+ ..++..++ ..|+.|+|||||..
T Consensus 200 PpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~Ls~FFnilTT~~D~~~k~fvSTv~~~kYPvtgfQWHPEKn 271 (340)
T KOG1559|consen 200 PPELLKKLSTDCLVMQNHKFGISPKNFQGNPALSSFFNILTTCTDGNSKTFVSTVESKKYPVTGFQWHPEKN 271 (340)
T ss_pred CHHHHHHhccchheeeccccccchhhccCCHHHHHHHhheeeecCCCceEEEEeecceeccceeeeecCccC
Confidence 112333333 5677889988765432111 111 12222 22 25667776 35999999999984
No 155
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.01 E-value=1.5e-09 Score=108.35 Aligned_cols=97 Identities=22% Similarity=0.266 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 477 PIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 477 ~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
..++.++++.+++.|++++.++|+++..+..+.++++++++++.+++|++++|||+++++++++++ .||+.|++|++..
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~-~Gad~vvigs~~l 106 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLD-LGVSRVIIGTAAV 106 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHH-cCCCEEEECchHH
Confidence 348999999999999999999999886566788999999999999999999999999999999996 9999999999998
Q ss_pred cCCCCHHHHHHHHHhCCC
Q 045794 557 RKEVPIQSVKEHLYKEGI 574 (578)
Q Consensus 557 ~~~~~~~~~~~~l~~~~i 574 (578)
..+..+.++.+.+.++.+
T Consensus 107 ~dp~~~~~i~~~~g~~~i 124 (234)
T cd04732 107 KNPELVKELLKEYGGERI 124 (234)
T ss_pred hChHHHHHHHHHcCCceE
Confidence 776667777776655433
No 156
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=99.01 E-value=1.1e-09 Score=109.09 Aligned_cols=102 Identities=32% Similarity=0.456 Sum_probs=85.0
Q ss_pred eEEEeeeEeecCCC-CEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHH
Q 045794 269 RVIACLDVRANDKG-DLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLR 347 (578)
Q Consensus 269 riIp~iDl~~~~~g-~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~ 347 (578)
+|+.++|++ +| + ++++||+ .... .+|.++++.+.+.|+.++++.|++. +|. .+++|+++++
T Consensus 123 ~ivvslD~~---~g~~-v~~~gw~----------~~~~-~~~~~~~~~~~~~g~~~ii~tdi~~--dGt-~~G~d~~~~~ 184 (229)
T PF00977_consen 123 RIVVSLDAR---DGYK-VATNGWQ----------ESSG-IDLEEFAKRLEELGAGEIILTDIDR--DGT-MQGPDLELLK 184 (229)
T ss_dssp GEEEEEEEE---ETEE-EEETTTT----------EEEE-EEHHHHHHHHHHTT-SEEEEEETTT--TTT-SSS--HHHHH
T ss_pred cEEEEEEee---eceE-EEecCcc----------ccCC-cCHHHHHHHHHhcCCcEEEEeeccc--cCC-cCCCCHHHHH
Confidence 899999999 67 5 5889997 2222 5999999999999999999999997 344 3588999999
Q ss_pred HHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhc
Q 045794 348 LTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 348 ~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
++++.+.+|++++|||++.+| ++++.+.|++.+++|++..+
T Consensus 185 ~l~~~~~~~viasGGv~~~~D-----------l~~l~~~G~~gvivg~al~~ 225 (229)
T PF00977_consen 185 QLAEAVNIPVIASGGVRSLED-----------LRELKKAGIDGVIVGSALHE 225 (229)
T ss_dssp HHHHHHSSEEEEESS--SHHH-----------HHHHHHTTECEEEESHHHHT
T ss_pred HHHHHcCCCEEEecCCCCHHH-----------HHHHHHCCCcEEEEehHhhC
Confidence 999999999999999999987 99999999999999998876
No 157
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.00 E-value=1.2e-09 Score=114.77 Aligned_cols=91 Identities=10% Similarity=0.218 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC--CCCC-------CCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC--DGQG-------KGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASA 548 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~--dG~~-------~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~g 548 (578)
++.++++.+++.|++.|++|..+. .|.. ...+++.++++++.+ ++|||++|||.+++|+.++++ +|+|
T Consensus 152 ~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~--~aDg 229 (333)
T PRK11815 152 FLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ--HVDG 229 (333)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh--cCCE
Confidence 467899999999999999997653 2211 124799999999885 899999999999999999985 6999
Q ss_pred HhhhhhhccCCCCHHHHHHHHHh
Q 045794 549 ALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 549 v~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
||+|++++.+++.+.++++++..
T Consensus 230 VmIGRa~l~nP~~~~~~~~~~~~ 252 (333)
T PRK11815 230 VMIGRAAYHNPYLLAEVDRELFG 252 (333)
T ss_pred EEEcHHHHhCCHHHHHHHHHhcC
Confidence 99999999999999999988763
No 158
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.99 E-value=2.1e-09 Score=107.98 Aligned_cols=92 Identities=17% Similarity=0.102 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
++.++++.+.+.|++++.+.|++... ..+.|+++++++.+.+++||.++|||+|.||++++++ .||+.+.+|+++...
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~-g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~-~Ga~kvviGs~~l~~ 110 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF-GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALA-TGCARVNIGTAALEN 110 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC-CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHH-CCCCEEEECchHhCC
Confidence 89999999999999999999998763 6778999999999999999999999999999999996 999999999999988
Q ss_pred CCCHHHHHHHHHhC
Q 045794 559 EVPIQSVKEHLYKE 572 (578)
Q Consensus 559 ~~~~~~~~~~l~~~ 572 (578)
+-.+.++.+.+.++
T Consensus 111 p~l~~~i~~~~~~~ 124 (241)
T PRK14024 111 PEWCARVIAEHGDR 124 (241)
T ss_pred HHHHHHHHHHhhhh
Confidence 77777777777655
No 159
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=98.97 E-value=1.3e-08 Score=100.93 Aligned_cols=189 Identities=17% Similarity=0.224 Sum_probs=118.7
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcce
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~ 390 (578)
+.++.+.+.|=+|. +.|++... ..--+-|.++.+ ..|+.+-=|-.+.++ +..+-+.++.+++.
T Consensus 33 ~a~~~~~~rgr~ef-~~~~e~~~------~~i~~e~~~~~~--~~~vivnv~~~~~ee--------~~~~a~~v~~~~d~ 95 (231)
T TIGR00736 33 KASRDIEKRGRKEF-SFNLEEFN------SYIIEQIKKAES--RALVSVNVRFVDLEE--------AYDVLLTIAEHADI 95 (231)
T ss_pred HHHHHHHHcCCccc-CcCcccHH------HHHHHHHHHHhh--cCCEEEEEecCCHHH--------HHHHHHHHhcCCCE
Confidence 56678888898885 35543310 111223444533 346655444455554 33444555668888
Q ss_pred eecchhhhccchhhhhcc----ccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 391 ISIGSDAVYAAEDYLKTG----VKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 391 vv~gt~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|-|+...-.. +..+.| -..+|+.+.++.+.--.-.+-+++
T Consensus 96 IdiN~gCP~~--~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsv---------------------------------- 139 (231)
T TIGR00736 96 IEINAHCRQP--EITEIGIGQELLKNKELLKEFLTKMKELNKPIFV---------------------------------- 139 (231)
T ss_pred EEEECCCCcH--HHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEE----------------------------------
Confidence 8775443220 000000 001345566665433111122333
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVS-IPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~-ipVIasGGi~s~eDi~~l~~ 542 (578)
+++-.. .+.+..++++.+++.|++.|.++. +..| .||+.++++++.++ +|||++|||.+.+|+.+.++
T Consensus 140 -KiR~~~--~~~~~~~~a~~l~~aGad~i~Vd~-----~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~ 211 (231)
T TIGR00736 140 -KIRGNC--IPLDELIDALNLVDDGFDGIHVDA-----MYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK 211 (231)
T ss_pred -EeCCCC--CcchHHHHHHHHHHcCCCEEEEee-----CCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH
Confidence 233211 234678999999999999998853 3333 59999999999985 99999999999999999997
Q ss_pred hcCchHHhhhhhhccCCCC
Q 045794 543 KTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~~~~~ 561 (578)
+||++|++|+++..+.+.
T Consensus 212 -~GAd~VmvgR~~l~~~~~ 229 (231)
T TIGR00736 212 -AGADFVSVARAILKGNVE 229 (231)
T ss_pred -hCCCeEEEcHhhccCCcC
Confidence 999999999999888654
No 160
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.95 E-value=5.3e-09 Score=104.79 Aligned_cols=106 Identities=21% Similarity=0.213 Sum_probs=89.3
Q ss_pred eEEEeeeEeecCCCC-EEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHH
Q 045794 269 RVIACLDVRANDKGD-LVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLR 347 (578)
Q Consensus 269 riIp~iDl~~~~~g~-~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~ 347 (578)
+|+.+||.+.+ +|+ -|+++||+ +.+. -+|.+++..+.+.|+.++++.|++. +|+. .++|+++++
T Consensus 136 ~IvvsiD~k~~-~g~~~Va~~GW~----------~~t~-~~~~e~~~~~~~~g~~eii~TdI~r--DGtl-~G~d~el~~ 200 (262)
T PLN02446 136 RLVLDLSCRKK-DGRYYVVTDRWQ----------KFSD-LAVDEETLEFLAAYCDEFLVHGVDV--EGKR-LGIDEELVA 200 (262)
T ss_pred CEEEEEEEEec-CCCEEEEECCCc----------ccCC-CCHHHHHHHHHHhCCCEEEEEEEcC--CCcc-cCCCHHHHH
Confidence 79999999853 462 36999997 3332 5999999999999999999999987 4543 589999999
Q ss_pred HHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc--Ccceeecchhh--hcc
Q 045794 348 LTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS--GADKISIGSDA--VYA 400 (578)
Q Consensus 348 ~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~--Ga~~vv~gt~~--~~~ 400 (578)
++++.+.+||++.|||+|++| ++++.+. |+.-+|+|.+. ++.
T Consensus 201 ~l~~~~~ipVIASGGv~sleD-----------i~~L~~~g~g~~gvIvGkAl~~y~g 246 (262)
T PLN02446 201 LLGEHSPIPVTYAGGVRSLDD-----------LERVKVAGGGRVDVTVGSALDIFGG 246 (262)
T ss_pred HHHhhCCCCEEEECCCCCHHH-----------HHHHHHcCCCCEEEEEEeeHHHhCC
Confidence 999999999999999999987 8999987 46789999998 664
No 161
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.94 E-value=2.4e-08 Score=118.53 Aligned_cols=195 Identities=17% Similarity=0.228 Sum_probs=117.3
Q ss_pred CCCCCcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCc---------------cCCCCCCEEEECCCCCchHHH----H
Q 045794 43 ATSSDSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTP---------------EDILNANRLIFPGVGAFAAAM----D 102 (578)
Q Consensus 43 ~~~~~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~---------------~dl~~~DGlILpGGg~~~~~~----~ 102 (578)
....+|+|+|+-++ +..-....++|+.+|+++..+... .+|.++++|++|||-++.+.+ .
T Consensus 973 ~~~~kpkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~ 1052 (1239)
T TIGR01857 973 EKVEKPRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAK 1052 (1239)
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHH
Confidence 33468999999876 556678899999999887655311 247899999999996555433 1
Q ss_pred HH----HhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCc-eee-------eecCCCCCCcce-eee
Q 045794 103 VL----NKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPG-VVG-------RFDSSNGFRVPQ-IGW 169 (578)
Q Consensus 103 ~l----~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~-~v~-------~~~~~~~~~~~~-~G~ 169 (578)
|. ....+.+.++++++.+.++||||.|||+|.. +|++|+ .+. .|-.+ ...++ -.|
T Consensus 1053 ~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~----------lGLlP~~~~~~~~~~~p~l~~N--~s~rf~~r~ 1120 (1239)
T TIGR01857 1053 FIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVK----------SGLLPYGNIEAANETSPTLTYN--DINRHVSKI 1120 (1239)
T ss_pred HHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHH----------cCCCcCccccccccCCceeeec--CCCCeEEee
Confidence 21 2235778888888899999999999999998 456653 110 01111 01111 134
Q ss_pred EEEEEcc-CCcccccCC---CeEEEEEeeeeeecCCC-------CCCcEEEEe-e-----------cCCce---EEEEE-
Q 045794 170 NALQITK-DSEILDDVG---DHHVYFVHSYRAMPSDD-------NKEWVSSTC-N-----------YGDNF---IASVR- 222 (578)
Q Consensus 170 ~~i~~~~-~~~l~~~l~---~~~~~~~H~~~v~~~~~-------~~~~~~~~~-~-----------~~d~~---iegi~- 222 (578)
..+++.. .++++.++. ...+.-.|+......+. ....+.... + ..++. |+|+.
T Consensus 1121 v~~~v~~~~s~~~~~~~~g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~NPNGS~~~IaGi~s 1200 (1239)
T TIGR01857 1121 VRTRIASTNSPWLSGVSVGDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFNGKPSMDSKYNPNGSSLAIEGITS 1200 (1239)
T ss_pred eEEEECCCCChhHhcCCCCCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCCCCCCChhhhhEeEC
Confidence 5555543 456665544 23444455543221110 011111111 1 12233 55666
Q ss_pred -eCCEEEEeeCCcccCc---------chHHHHHHHhh
Q 045794 223 -RGNVHAVQFHPEKSGD---------VGLSVLRRFLH 249 (578)
Q Consensus 223 -~~~i~gvQFHPE~~~~---------~~~~l~~~Fl~ 249 (578)
+++++|..-|||.... ++..||++.++
T Consensus 1201 ~dGrvlg~MpHpER~~~~~~~~~~g~~~~~iF~~~v~ 1237 (1239)
T TIGR01857 1201 PDGRIFGKMGHSERYGDGLFKNIPGNKDQHLFASGVK 1237 (1239)
T ss_pred CCCCEEEECCCcccccCcccCCCCchhhhHHHHHHHh
Confidence 4799999999998421 34778877764
No 162
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.93 E-value=6.3e-09 Score=108.37 Aligned_cols=90 Identities=6% Similarity=0.119 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC-CCCCCC--------CCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC-DGQGKG--------FDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASA 548 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~-dG~~~G--------~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~g 548 (578)
.+.++++.+++.|++.|.+|.+++ .+.++| .||+.++++++.+ ++|||++|||.+.+|+.+.+. ||+|
T Consensus 142 ~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~--g~dg 219 (318)
T TIGR00742 142 FLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS--HVDG 219 (318)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh--CCCE
Confidence 467899999999999999999986 333333 2899999998887 899999999999999999984 8999
Q ss_pred HhhhhhhccCCCCHHHHHHHHH
Q 045794 549 ALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 549 v~vgsa~~~~~~~~~~~~~~l~ 570 (578)
||||+++..++|.+.+++++|.
T Consensus 220 VMigRgal~nP~if~~~~~~l~ 241 (318)
T TIGR00742 220 VMVGREAYENPYLLANVDREIF 241 (318)
T ss_pred EEECHHHHhCCHHHHHHHHHhc
Confidence 9999999999999999998886
No 163
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.91 E-value=5.6e-09 Score=104.81 Aligned_cols=106 Identities=16% Similarity=0.078 Sum_probs=87.6
Q ss_pred eEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH
Q 045794 269 RVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL 348 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~ 348 (578)
+++.++|.+.+.++..+.++||. . + ..+|.++++.+.+.|+.++++.|++. +|+ .+++|++++++
T Consensus 123 ~ivvslD~k~~g~~~~v~~~Gw~----------~-~-~~~~~~~~~~~~~~g~~~ii~tdI~~--dGt-~~G~d~~l~~~ 187 (243)
T TIGR01919 123 IVAVGLDVLEDGEWHTLGNRGWS----------D-G-GGDLEVLERLLDSGGCSRVVVTDSKK--DGL-SGGPNELLLEV 187 (243)
T ss_pred cEEEEEEEecCCceEEEECCCee----------c-C-CCcHHHHHHHHHhCCCCEEEEEecCC--ccc-CCCcCHHHHHH
Confidence 68999999831013456889986 3 2 35999999999999999999999997 344 35899999999
Q ss_pred HhhhccccEEEeCCccccccCCCCccChHHHHHHH---HHcCcceeecchhhhcc
Q 045794 349 TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY---FRSGADKISIGSDAVYA 400 (578)
Q Consensus 349 i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~---l~~Ga~~vv~gt~~~~~ 400 (578)
+++.+.+||+++||+++.+| ++++ ...|++.+++|++..+.
T Consensus 188 l~~~~~~pviasGGv~s~eD-----------l~~l~~l~~~Gv~gvivg~Al~~g 231 (243)
T TIGR01919 188 VAARTDAIVAASGGSSLLDD-----------LRAIKYLDEGGVSVAIGGKLLYAR 231 (243)
T ss_pred HHhhCCCCEEEECCcCCHHH-----------HHHHHhhccCCeeEEEEhHHHHcC
Confidence 99999999999999999988 6555 35699999999998875
No 164
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.90 E-value=5.4e-09 Score=103.50 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=82.1
Q ss_pred EEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHH
Q 045794 270 VIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLT 349 (578)
Q Consensus 270 iIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i 349 (578)
++.+||++ +|++ +++||. .++.++.+.|.+.|+ ++.+.|++.- |+ .++.|+++++++
T Consensus 123 ~vvslD~~---~g~v-~~~g~~---------------~~~~~~~~~~~~~g~-~ii~tdI~~d--Gt-~~G~d~eli~~i 179 (221)
T TIGR00734 123 TVVSLDFK---EKFL-DASGLF---------------ESLEEVRDFLNSFDY-GLIVLDIHSV--GT-MKGPNLELLTKT 179 (221)
T ss_pred hEEEEEeE---CCcc-cccccc---------------ccHHHHHHHHHhcCC-EEEEEECCcc--cc-CCCCCHHHHHHH
Confidence 48999999 7773 456664 278899999999999 7888999873 43 458899999999
Q ss_pred hhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhc
Q 045794 350 SENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 350 ~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
++.+++|++++|||++.+| ++++++.||+.|++||+..+
T Consensus 180 ~~~~~~pvia~GGi~s~ed-----------~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 180 LELSEHPVMLGGGISGVED-----------LELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred HhhCCCCEEEeCCCCCHHH-----------HHHHHHCCCCEEEEhHHhhC
Confidence 9999999999999999987 88999999999999998876
No 165
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.88 E-value=9.6e-09 Score=102.37 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+|+++++.+.+.|++++.+.|++.. ...+.+.++++++.+....|+.++|||+|.+|++++++ .|++.|++||.....
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a-~~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~-~Ga~kvvigt~a~~~ 108 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAA-EGVGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLS-LDVNALVFSTIVFTN 108 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc-CCCcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHH-CCCCEEEECchhhCC
Confidence 8999999999999999999999866 46677999999998854459999999999999999996 899999999999888
Q ss_pred CCCHHHHHHHHHhCCCee
Q 045794 559 EVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 559 ~~~~~~~~~~l~~~~i~v 576 (578)
+-.++++.+.+.++.|-+
T Consensus 109 p~~~~~~~~~~g~~~ivv 126 (232)
T PRK13586 109 FNLFHDIVREIGSNRVLV 126 (232)
T ss_pred HHHHHHHHHHhCCCCEEE
Confidence 777778777776665543
No 166
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=98.87 E-value=7.7e-08 Score=92.02 Aligned_cols=186 Identities=24% Similarity=0.259 Sum_probs=127.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+++.+.++.+.+.|++.+++...+....... ....+.++.+.+..++|+.+...+.+..+.- ...++.+.++
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~ 83 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE--TDDKEVLKEVAAETDLPLGVQLAINDAAAAV------DIAAAAARAA 83 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCC--CccccHHHHHHhhcCCcEEEEEccCCchhhh------hHHHHHHHHc
Confidence 4789999999999999999987765432211 1111357777777889998888877754300 0003578889
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|+|.|.++...... +++. ++.++++.+.++...+++.+....
T Consensus 84 g~d~v~l~~~~~~~-~~~~-------~~~~~~i~~~~~~~~v~~~~~~~~------------------------------ 125 (200)
T cd04722 84 GADGVEIHGAVGYL-ARED-------LELIRELREAVPDVKVVVKLSPTG------------------------------ 125 (200)
T ss_pred CCCEEEEeccCCcH-HHHH-------HHHHHHHHHhcCCceEEEEECCCC------------------------------
Confidence 99999997665431 1111 367788888774344555443111
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCH---HHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDM---DLIKLISDAVSIPVIASSGAGAVEHFSDVFRK 543 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~---~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~ 543 (578)
... + + .+.+.|++.+.+......+.....+. ..++.++...++||+++|||.+.+++.++++
T Consensus 126 ----------~~~--~-~-~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~- 190 (200)
T cd04722 126 ----------ELA--A-A-AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALA- 190 (200)
T ss_pred ----------ccc--h-h-hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH-
Confidence 000 0 0 16788999999998877666655543 5566666777899999999999999999996
Q ss_pred cCchHHhhhh
Q 045794 544 TNASAALAAG 553 (578)
Q Consensus 544 ~G~~gv~vgs 553 (578)
.|++++++||
T Consensus 191 ~Gad~v~vgs 200 (200)
T cd04722 191 LGADGVIVGS 200 (200)
T ss_pred hCCCEEEecC
Confidence 7999999886
No 167
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.83 E-value=8.4e-08 Score=105.81 Aligned_cols=190 Identities=16% Similarity=0.149 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh--------hccccEEEeCCccccccCCCCccChHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE--------NVFVPLTVGGGIRDFTDANGRHYSSLE 378 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~--------~~~~pi~~gGGir~~~d~~~~~~~~~~ 378 (578)
.+..++.+.+.+.+...+-++|=++..-|-. .-.++++.+.. .-.-.+.+|.-|...+| .+|
T Consensus 182 ~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvI---Tr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~-------~~~ 251 (505)
T PLN02274 182 IDLEEAEAVLKDSKKGKLPLVNEDGELVDLV---TRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRES-------DKE 251 (505)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCeEEEEE---EHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCcc-------HHH
Confidence 3556788888899999999997433111111 11233333321 01235777776665433 368
Q ss_pred HHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCC
Q 045794 379 VASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPN 458 (578)
Q Consensus 379 ~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (578)
.++.|.++|+|.|+++++--.. . .+ +++++++.+.|+...|++ -
T Consensus 252 r~~~l~~ag~d~i~iD~~~g~~-~-~~-------~~~i~~ik~~~p~~~vi~-g-------------------------- 295 (505)
T PLN02274 252 RLEHLVKAGVDVVVLDSSQGDS-I-YQ-------LEMIKYIKKTYPELDVIG-G-------------------------- 295 (505)
T ss_pred HHHHHHHcCCCEEEEeCCCCCc-H-HH-------HHHHHHHHHhCCCCcEEE-e--------------------------
Confidence 8999999999999998853221 1 11 478999999996544443 1
Q ss_pred CCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCC----CCHHHHHHHHhhCCCcEEEe
Q 045794 459 GEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKG----FDMDLIKLISDAVSIPVIAS 528 (578)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G----~d~~li~~l~~~~~ipVIas 528 (578)
++...+-++.+.+.|++.|.+. ..++..+.-| ..+..+.++++..++|||+.
T Consensus 296 ------------------~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIad 357 (505)
T PLN02274 296 ------------------NVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIAD 357 (505)
T ss_pred ------------------cCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEe
Confidence 3445778999999999998762 2233322222 25667888888889999999
Q ss_pred cCCCCHHHHHHHHHhcCchHHhhhhhhccCCCC
Q 045794 529 SGAGAVEHFSDVFRKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 529 GGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~ 561 (578)
|||++..|+.+++. .||++|++|++|.....+
T Consensus 358 GGI~~~~di~kAla-~GA~~V~vGs~~~~t~Es 389 (505)
T PLN02274 358 GGISNSGHIVKALT-LGASTVMMGSFLAGTTEA 389 (505)
T ss_pred CCCCCHHHHHHHHH-cCCCEEEEchhhcccccC
Confidence 99999999999996 999999999999765443
No 168
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.80 E-value=5.1e-08 Score=101.30 Aligned_cols=185 Identities=19% Similarity=0.206 Sum_probs=123.9
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHH-HHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEV-ASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~-~~~~l~ 385 (578)
.+| ++|....+.|. +=++..... ....-.+.|+++.+.++.|+-+ +-+ +++|..+. ++.+++
T Consensus 23 s~~-~la~avs~aGg--lG~l~~~~~-----~~~~l~~~i~~~~~~t~~pfgv----n~~-----~~~~~~~~~~~~~~~ 85 (307)
T TIGR03151 23 ATG-SLAAAVSNAGG--LGIIGAGNA-----PPDVVRKEIRKVKELTDKPFGV----NIM-----LLSPFVDELVDLVIE 85 (307)
T ss_pred CCH-HHHHHHHhCCC--cceeccccC-----CHHHHHHHHHHHHHhcCCCcEE----eee-----cCCCCHHHHHHHHHh
Confidence 454 67777777764 333333211 1122235577777666777733 221 23455444 466889
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
.|++.|+++. ..+. ++++++.+ .| -+++. ++
T Consensus 86 ~~v~~v~~~~---g~p~-----------~~i~~lk~-~g-~~v~~--~v------------------------------- 116 (307)
T TIGR03151 86 EKVPVVTTGA---GNPG-----------KYIPRLKE-NG-VKVIP--VV------------------------------- 116 (307)
T ss_pred CCCCEEEEcC---CCcH-----------HHHHHHHH-cC-CEEEE--Ec-------------------------------
Confidence 9998887642 2222 35566654 34 12221 21
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC-CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG-KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~-~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
...+.++++++.|++.|+++.....|+. ..+++++++++++.+++|||++|||.+.+++.+++. .
T Consensus 117 -------------~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~-~ 182 (307)
T TIGR03151 117 -------------ASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFA-L 182 (307)
T ss_pred -------------CCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHH-c
Confidence 2257889999999999999999888874 335899999999999999999999999999999996 9
Q ss_pred CchHHhhhhhhccCCCC--HHHHHHHHHh
Q 045794 545 NASAALAAGIFHRKEVP--IQSVKEHLYK 571 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~~--~~~~~~~l~~ 571 (578)
|++||++|+.|....-. -+..|+.|.+
T Consensus 183 GA~gV~iGt~f~~t~Es~~~~~~k~~l~~ 211 (307)
T TIGR03151 183 GAEAVQMGTRFLCAKECNVHPNYKEKVLK 211 (307)
T ss_pred CCCEeecchHHhcccccCCCHHHHHHHHh
Confidence 99999999988654422 3556766644
No 169
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=98.78 E-value=3e-07 Score=91.70 Aligned_cols=185 Identities=21% Similarity=0.161 Sum_probs=134.1
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.-||.++|+.|.+.||..|.| .-+... .+-+++.++.+++.+.+||..-..|-+..+ +.+...
T Consensus 60 ~~d~~~~A~~y~~~GA~aISV-lTe~~~-----F~Gs~~~l~~v~~~v~~PvL~KDFIid~~Q-----------I~ea~~ 122 (247)
T PRK13957 60 DYHPVQIAKTYETLGASAISV-LTDQSY-----FGGSLEDLKSVSSELKIPVLRKDFILDEIQ-----------IREARA 122 (247)
T ss_pred CCCHHHHHHHHHHCCCcEEEE-EcCCCc-----CCCCHHHHHHHHHhcCCCEEeccccCCHHH-----------HHHHHH
Confidence 359999999999999998864 333310 011367888888888999999999998754 778888
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|||-|.+=...+.. ..+ ..+-+.+..+|-+.+| -+
T Consensus 123 ~GADavLLI~~~L~~-~~l---------~~l~~~a~~lGle~LV-EV--------------------------------- 158 (247)
T PRK13957 123 FGASAILLIVRILTP-SQI---------KSFLKHASSLGMDVLV-EV--------------------------------- 158 (247)
T ss_pred cCCCEEEeEHhhCCH-HHH---------HHHHHHHHHcCCceEE-EE---------------------------------
Confidence 999999887777762 112 2234455677865332 11
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRK 543 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~ 543 (578)
+ -.+-++.+.+.|++-|-+++++.... ..|++...++.... +..+|+.+||.+++|+.++.+
T Consensus 159 ----h---------~~~El~~a~~~ga~iiGINnRdL~t~--~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~- 222 (247)
T PRK13957 159 ----H---------TEDEAKLALDCGAEIIGINTRDLDTF--QIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRK- 222 (247)
T ss_pred ----C---------CHHHHHHHHhCCCCEEEEeCCCCccc--eECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHH-
Confidence 1 13455667778999877888776522 45777777777665 467899999999999999975
Q ss_pred cCchHHhhhhhhccCCCCHHHHHHH
Q 045794 544 TNASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 544 ~G~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
. ++|++||+++...+-+-..++++
T Consensus 223 ~-~davLvG~~lm~~~d~~~~~~~l 246 (247)
T PRK13957 223 L-VDAALIGTYFMEKKDIRKAWLSL 246 (247)
T ss_pred h-CCEEEECHHHhCCCCHHHHHHHh
Confidence 5 99999999999887766555543
No 170
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.77 E-value=3.4e-07 Score=95.01 Aligned_cols=95 Identities=24% Similarity=0.284 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHcCCcEEEEeccC----------------CCCCCCCCC-----HHHHHHHHhhCCCcEEEecCCCCHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCID----------------CDGQGKGFD-----MDLIKLISDAVSIPVIASSGAGAVEHF 537 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~----------------~dG~~~G~d-----~~li~~l~~~~~ipVIasGGi~s~eDi 537 (578)
+..++++.+++.|++.|.+++.. ..|.+.|+. ++.++++++.+++|||++|||.+.+|+
T Consensus 170 ~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da 249 (300)
T TIGR01037 170 DITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDA 249 (300)
T ss_pred hHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHH
Confidence 46889999999999999986421 123345553 478889999899999999999999999
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHH----HHHhCCC
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKE----HLYKEGI 574 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~----~l~~~~i 574 (578)
.++++ .||++|++|+++...++.+..+++ +|.+.|+
T Consensus 250 ~~~l~-~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~ 289 (300)
T TIGR01037 250 LEFLM-AGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGF 289 (300)
T ss_pred HHHHH-cCCCceeecHHHhcCchHHHHHHHHHHHHHHHcCC
Confidence 99996 899999999999887777655555 4445554
No 171
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.74 E-value=2.1e-07 Score=96.64 Aligned_cols=95 Identities=26% Similarity=0.276 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC----------------CCCCCCC-----CHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC----------------DGQGKGF-----DMDLIKLISDAVSIPVIASSGAGAVEHF 537 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~----------------dG~~~G~-----d~~li~~l~~~~~ipVIasGGi~s~eDi 537 (578)
+..++++.+++.|++.|.+++... .|.++|+ .++.++++++.+++|||++|||.+.+|+
T Consensus 170 ~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da 249 (301)
T PRK07259 170 DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDA 249 (301)
T ss_pred hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 568899999999999998754221 1223443 5789999999999999999999999999
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHH----HHHhCCC
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKE----HLYKEGI 574 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~----~l~~~~i 574 (578)
.+++. .||++|++++++..++..+..+++ +|.++|.
T Consensus 250 ~~~l~-aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 250 IEFIM-AGASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHH-cCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 99996 899999999999988876665554 4455553
No 172
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.74 E-value=2.1e-07 Score=111.51 Aligned_cols=96 Identities=21% Similarity=0.283 Sum_probs=71.1
Q ss_pred cccCCCCCcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCc------cCCCCCCEEEECCCCCchHHHH----HH----
Q 045794 40 SIRATSSDSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTP------EDILNANRLIFPGVGAFAAAMD----VL---- 104 (578)
Q Consensus 40 ~~~~~~~~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~------~dl~~~DGlILpGGg~~~~~~~----~l---- 104 (578)
+...+..+|+|+|+-++ +..-.....+|+.+|+++..+... ..|.++++|++|||-++.+.+. |.
T Consensus 1030 ~~~~~~~~pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~ 1109 (1307)
T PLN03206 1030 KIMNATSKPKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIR 1109 (1307)
T ss_pred ccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHH
Confidence 33345678999999875 667778899999999887655432 3488999999999955444321 11
Q ss_pred HhhcHHHHHHHHH-hCCCCEEEEechHHHHhh
Q 045794 105 NKTGMAEALCAYI-EKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 105 ~~~~l~~~i~~~~-~~g~PIlGIClG~QlLa~ 135 (578)
....+.+.++++. +.+.++||||.|||+|..
T Consensus 1110 ~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~ 1141 (1307)
T PLN03206 1110 FNEPLLQQFQEFYNRPDTFSLGVCNGCQLMAL 1141 (1307)
T ss_pred hChHHHHHHHHHHhCCCceEEEEcHHHHHHHH
Confidence 1225677888888 458999999999999998
No 173
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.73 E-value=2.8e-08 Score=109.91 Aligned_cols=97 Identities=20% Similarity=0.190 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCC---CCCCCHHHHHHHHhhCCCcEEEecCCCCH-----------HHHHHHHHhc
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQ---GKGFDMDLIKLISDAVSIPVIASSGAGAV-----------EHFSDVFRKT 544 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~---~~G~d~~li~~l~~~~~ipVIasGGi~s~-----------eDi~~l~~~~ 544 (578)
+++++++.+.+.|+++|.+.|++..-. .+.+++++++++++.+.+|+.++|||++. |+++++++ .
T Consensus 268 dPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~-~ 346 (538)
T PLN02617 268 KPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFR-S 346 (538)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHH-c
Confidence 799999999999999999999987322 34456999999999999999999999998 55899996 9
Q ss_pred CchHHhhhhhhccCC------------CCHHHHHHHHHhCCCee
Q 045794 545 NASAALAAGIFHRKE------------VPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 545 G~~gv~vgsa~~~~~------------~~~~~~~~~l~~~~i~v 576 (578)
||+.|++||++...+ -.++++.+.+.+|.|.|
T Consensus 347 GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivv 390 (538)
T PLN02617 347 GADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVV 390 (538)
T ss_pred CCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEE
Confidence 999999999888753 55777877888776655
No 174
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.73 E-value=2.1e-07 Score=112.33 Aligned_cols=182 Identities=20% Similarity=0.234 Sum_probs=108.0
Q ss_pred CCCCcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCc------cCCCCCCEEEECCCCCchHHHH----HH----Hhhc
Q 045794 44 TSSDSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTP------EDILNANRLIFPGVGAFAAAMD----VL----NKTG 108 (578)
Q Consensus 44 ~~~~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~------~dl~~~DGlILpGGg~~~~~~~----~l----~~~~ 108 (578)
+..+|+|+|+-++ +..-.....+|..+|+++..+... ..|.++++|++|||-++.+.+. |. ....
T Consensus 1052 ~~~~p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~ 1131 (1310)
T TIGR01735 1052 KGVRPKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPR 1131 (1310)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChH
Confidence 3467999999876 556678899999999887665422 2488999999999965544332 21 1235
Q ss_pred HHHHHHHHH-hCCCCEEEEechHHHHhhhcccCCCcCCCcccCceee--eecCCCCCCcceeeeEEEEEcc-CCcccccC
Q 045794 109 MAEALCAYI-EKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVG--RFDSSNGFRVPQIGWNALQITK-DSEILDDV 184 (578)
Q Consensus 109 l~~~i~~~~-~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~--~~~~~~~~~~~~~G~~~i~~~~-~~~l~~~l 184 (578)
+.+.++++. +.+.++||||.|||+|... +|++|+.-. .|-.+ ....-+-.|..+++.. .+++++++
T Consensus 1132 ~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~---------~gllp~~~~~p~l~~N-~s~~fe~r~~~~~v~~s~s~~~~~~ 1201 (1310)
T TIGR01735 1132 LRDQFQAFFKRPDTFSLGVCNGCQMLSNL---------LEWIPGTENWPHFVRN-NSERFEARVASVRVGESPSIMLRGM 1201 (1310)
T ss_pred HHHHHHHHHhCCCceEEEecHHHHHHHHH---------hCcCCCCCCCceeeec-CCCCeEEeeeEEEECCCCChhhhhc
Confidence 677888888 7889999999999999931 345543210 01111 0111112456666644 45666555
Q ss_pred C--CeEEEEEeeeeee--cCC------CCCCcEEEEe-e-----------cCCc---eEEEEE--eCCEEEEeeCCcc
Q 045794 185 G--DHHVYFVHSYRAM--PSD------DNKEWVSSTC-N-----------YGDN---FIASVR--RGNVHAVQFHPEK 235 (578)
Q Consensus 185 ~--~~~~~~~H~~~v~--~~~------~~~~~~~~~~-~-----------~~d~---~iegi~--~~~i~gvQFHPE~ 235 (578)
. ...++-.|+.... ..+ .....+.... + ..++ -|+|+. +++++|...|||.
T Consensus 1202 ~g~~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGrvl~~MpHPEr 1279 (1310)
T TIGR01735 1202 AGSRLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYPLNPNGSPGGIAGITSCDGRVTIMMPHPER 1279 (1310)
T ss_pred CCCEEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCCCCCCCChhcceEeECCCCCEEEEcCCHHH
Confidence 4 2444555644221 111 0011121111 1 1222 256776 5799999999997
No 175
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.72 E-value=2.2e-07 Score=96.28 Aligned_cols=90 Identities=23% Similarity=0.257 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC----------------CCCCCCC-----CHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC----------------DGQGKGF-----DMDLIKLISDAVSIPVIASSGAGAVEHF 537 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~----------------dG~~~G~-----d~~li~~l~~~~~ipVIasGGi~s~eDi 537 (578)
+..++++.+++.|++.|.+++... .|.+.|+ .++.++++++.+++|||++|||.+.+|+
T Consensus 167 ~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da 246 (296)
T cd04740 167 DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDA 246 (296)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 467899999999999998764321 0334444 3688999999899999999999999999
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
.++++ .||++|++++++..++..+.++++.|
T Consensus 247 ~~~l~-~GAd~V~igra~l~~p~~~~~i~~~l 277 (296)
T cd04740 247 LEFLM-AGASAVQVGTANFVDPEAFKEIIEGL 277 (296)
T ss_pred HHHHH-cCCCEEEEchhhhcChHHHHHHHHHH
Confidence 99996 99999999999998888777665544
No 176
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.71 E-value=7.6e-07 Score=87.22 Aligned_cols=171 Identities=14% Similarity=0.127 Sum_probs=122.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++++.+.+.|++-+=+. ++. ....+.|++++++...++.+| |.|-+.++ ++..++
T Consensus 22 ~~~~~~~~a~~~gGi~~iEvt-~~~--------~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~-----------~~~a~~ 81 (206)
T PRK09140 22 DEALAHVGALIEAGFRAIEIP-LNS--------PDPFDSIAALVKALGDRALIGAGTVLSPEQ-----------VDRLAD 81 (206)
T ss_pred HHHHHHHHHHHHCCCCEEEEe-CCC--------ccHHHHHHHHHHHcCCCcEEeEEecCCHHH-----------HHHHHH
Confidence 477889999999999977766 332 123578999998887678888 66777755 999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.++.+... ++++ +.+...|. -++++
T Consensus 82 aGA~fivsp~~~---------------~~v~-~~~~~~~~-~~~~G---------------------------------- 110 (206)
T PRK09140 82 AGGRLIVTPNTD---------------PEVI-RRAVALGM-VVMPG---------------------------------- 110 (206)
T ss_pred cCCCEEECCCCC---------------HHHH-HHHHHCCC-cEEcc----------------------------------
Confidence 999999997521 2333 44455542 12221
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRK 543 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~ 543 (578)
-.++ +-+.+..+.|++.+-+...+ ...++.++.+++.+ ++|+++.||| +.+.+.++++
T Consensus 111 -----------~~t~-~E~~~A~~~Gad~vk~Fpa~------~~G~~~l~~l~~~~~~~ipvvaiGGI-~~~n~~~~~~- 170 (206)
T PRK09140 111 -----------VATP-TEAFAALRAGAQALKLFPAS------QLGPAGIKALRAVLPPDVPVFAVGGV-TPENLAPYLA- 170 (206)
T ss_pred -----------cCCH-HHHHHHHHcCCCEEEECCCC------CCCHHHHHHHHhhcCCCCeEEEECCC-CHHHHHHHHH-
Confidence 1133 34677778999999875421 23478899998877 4999999999 8899999996
Q ss_pred cCchHHhhhhhhccCCCCHHHHHHH
Q 045794 544 TNASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 544 ~G~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
.|++++.++|++.......+++++.
T Consensus 171 aGa~~vav~s~l~~~~~~~~~i~~~ 195 (206)
T PRK09140 171 AGAAGFGLGSALYRPGQSAEEVAER 195 (206)
T ss_pred CCCeEEEEehHhcccccChHHHHHH
Confidence 9999999999997653334444443
No 177
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.71 E-value=3.4e-07 Score=110.81 Aligned_cols=93 Identities=18% Similarity=0.270 Sum_probs=69.6
Q ss_pred CCCCcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCc------cCCCCCCEEEECCCCCchHHHH----HHHh----hc
Q 045794 44 TSSDSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTP------EDILNANRLIFPGVGAFAAAMD----VLNK----TG 108 (578)
Q Consensus 44 ~~~~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~------~dl~~~DGlILpGGg~~~~~~~----~l~~----~~ 108 (578)
++.+|+|+|+-++ +..-.....+|+.+|+++..+... ..|.++++|++|||-++.+.+. |... ..
T Consensus 1032 ~~~~pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~ 1111 (1290)
T PRK05297 1032 TGARPKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSYGDVLGAGEGWAKSILFNPR 1111 (1290)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccCCcccchHHHHHHHHhhccHH
Confidence 3467999999876 667778999999999887665422 3488999999999955544331 2221 25
Q ss_pred HHHHHHHHH-hCCCCEEEEechHHHHhhh
Q 045794 109 MAEALCAYI-EKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 109 l~~~i~~~~-~~g~PIlGIClG~QlLa~a 136 (578)
+.+.++++. +.+.++||||.|||+|...
T Consensus 1112 ~~~~~~~f~~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297 1112 LRDQFEAFFARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred HHHHHHHHHhCCCceEEEEcHHHHHHHHh
Confidence 677788866 6789999999999999983
No 178
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.67 E-value=3.9e-07 Score=94.74 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=98.2
Q ss_pred EEeCCccccccCCCCccChHHHHHHHHHcCc--ceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEecc
Q 045794 358 TVGGGIRDFTDANGRHYSSLEVASEYFRSGA--DKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPR 435 (578)
Q Consensus 358 ~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga--~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~ 435 (578)
.++.++..-++ .++.+.+++++|+ |.|+|.++--. . ..+ .++++++.+.|+..-|++ =+
T Consensus 87 ~v~~~vg~~~~-------~~~~~~~Lv~ag~~~d~i~iD~a~gh-~-~~~-------~e~I~~ir~~~p~~~vi~-g~-- 147 (326)
T PRK05458 87 IASISVGVKDD-------EYDFVDQLAAEGLTPEYITIDIAHGH-S-DSV-------INMIQHIKKHLPETFVIA-GN-- 147 (326)
T ss_pred EEEEEecCCHH-------HHHHHHHHHhcCCCCCEEEEECCCCc-h-HHH-------HHHHHHHHhhCCCCeEEE-Ee--
Confidence 46656554222 2578999999965 99999665422 1 122 278999999996443333 11
Q ss_pred ccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEec------cCCCCCCCC-
Q 045794 436 RVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNC------IDCDGQGKG- 508 (578)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~td------i~~dG~~~G- 508 (578)
+...+.++.+.+.|++.+.+.. +++..+..+
T Consensus 148 ------------------------------------------V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~ 185 (326)
T PRK05458 148 ------------------------------------------VGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGT 185 (326)
T ss_pred ------------------------------------------cCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCC
Confidence 2236788999999999987441 222222223
Q ss_pred CCHH--HHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 509 FDMD--LIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 509 ~d~~--li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+||. .++++++.+++|||+.|||.+..|+.+++. .||++|++|++|..
T Consensus 186 ~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa-~GA~aV~vG~~~~~ 235 (326)
T PRK05458 186 GGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIR-FGATMVMIGSLFAG 235 (326)
T ss_pred CccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH-hCCCEEEechhhcC
Confidence 5665 589998888999999999999999999996 89999999999973
No 179
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.66 E-value=4.8e-08 Score=95.83 Aligned_cols=77 Identities=26% Similarity=0.249 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHc-CCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKE-GADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~-g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+|.+++..-... ..- +|++||+.. +. ..|.++++++++.+ ++|+++|||||+.|+ +++++
T Consensus 132 ~~~e~~~ayA~aae~~g-~~ivyLe~S--G~---~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~-----------a~~l~ 194 (219)
T cd02812 132 LKPEDAAAYALAAEYLG-MPIVYLEYS--GA---YGPPEVVRAVKKVLGDTPLIVGGGIRSGEQ-----------AKEMA 194 (219)
T ss_pred CCHHHHHHHHHHHHHcC-CeEEEeCCC--CC---cCCHHHHHHHHHhcCCCCEEEeCCCCCHHH-----------HHHHH
Confidence 4665554443332 222 899999932 22 25689999999988 999999999999976 99999
Q ss_pred HcCcceeecchhhhcc
Q 045794 385 RSGADKISIGSDAVYA 400 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~ 400 (578)
++|||+||+||+..++
T Consensus 195 ~aGAD~VVVGsai~~~ 210 (219)
T cd02812 195 EAGADTIVVGNIVEED 210 (219)
T ss_pred HcCCCEEEECchhhCC
Confidence 9999999999999995
No 180
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=98.65 E-value=5.2e-07 Score=98.03 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHcCCcEEEEec---------------------cCCCCCCCCCC-----HHHHHHHHhhC---CCcEEEec
Q 045794 479 GAYELAKAVEDLGAGEILLNC---------------------IDCDGQGKGFD-----MDLIKLISDAV---SIPVIASS 529 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~td---------------------i~~dG~~~G~d-----~~li~~l~~~~---~ipVIasG 529 (578)
++.++++.+++.|++.|++++ .+..|.++|+- ++.+.++++.+ ++|||++|
T Consensus 181 ~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~G 260 (420)
T PRK08318 181 DIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIG 260 (420)
T ss_pred cHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeec
Confidence 478999999999999999532 12345566764 78999998877 79999999
Q ss_pred CCCCHHHHHHHHHhcCchHHhhhhhhcc-CCCCHHHH----HHHHHhCCC
Q 045794 530 GAGAVEHFSDVFRKTNASAALAAGIFHR-KEVPIQSV----KEHLYKEGI 574 (578)
Q Consensus 530 Gi~s~eDi~~l~~~~G~~gv~vgsa~~~-~~~~~~~~----~~~l~~~~i 574 (578)
||.+.+|+.+.+. +||++|+++|+++. ++..+.++ .++|.+.|+
T Consensus 261 GI~s~~da~e~i~-aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~ 309 (420)
T PRK08318 261 GIETWRDAAEFIL-LGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGF 309 (420)
T ss_pred CcCCHHHHHHHHH-hCCChheeeeeeccCCchhHHHHHHHHHHHHHHcCc
Confidence 9999999999996 99999999999876 66554444 455666664
No 181
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.64 E-value=3.1e-07 Score=95.25 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHcCCcEEEEec---------------------cCCCCCCCCC-C----HHHHHHHHhhC--CCcEEEecC
Q 045794 479 GAYELAKAVEDLGAGEILLNC---------------------IDCDGQGKGF-D----MDLIKLISDAV--SIPVIASSG 530 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~td---------------------i~~dG~~~G~-d----~~li~~l~~~~--~ipVIasGG 530 (578)
++.++++.+++.|++.|++++ .+..|.++|+ + ++.+.++++.+ ++|||++||
T Consensus 181 ~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GG 260 (299)
T cd02940 181 DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGG 260 (299)
T ss_pred hHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECC
Confidence 578999999999999998643 2234456664 4 79999999999 899999999
Q ss_pred CCCHHHHHHHHHhcCchHHhhhhhhcc-CCCCHHHHHH
Q 045794 531 AGAVEHFSDVFRKTNASAALAAGIFHR-KEVPIQSVKE 567 (578)
Q Consensus 531 i~s~eDi~~l~~~~G~~gv~vgsa~~~-~~~~~~~~~~ 567 (578)
|.+.+|+.+.+. +||++|+++|+++. |+-.+.++++
T Consensus 261 I~~~~da~~~l~-aGA~~V~i~ta~~~~g~~~~~~i~~ 297 (299)
T cd02940 261 IESWEDAAEFLL-LGASVVQVCTAVMNQGFTIVDDMCT 297 (299)
T ss_pred CCCHHHHHHHHH-cCCChheEceeecccCCcHHHHHhh
Confidence 999999999996 99999999999876 7766666654
No 182
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=98.62 E-value=1.6e-07 Score=92.55 Aligned_cols=108 Identities=21% Similarity=0.323 Sum_probs=83.1
Q ss_pred CCcEEEEEECCC----CCHHHHHHHHHHC-CCeEEEeC-----C-ccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHH
Q 045794 46 SDSVVTLLDYGA----GNVRSVRNAIRHL-GFGIKDVQ-----T-PEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALC 114 (578)
Q Consensus 46 ~~~~I~vld~~~----g~~~~i~~~L~~~-Gv~v~~v~-----~-~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~ 114 (578)
.+++|+++-.-+ .+..++.++++.+ |+++..+. . .+.+.++|+|++|| |++...+..++..++.+.|+
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~G-G~~~~~~~~l~~~~l~~~l~ 108 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGG-GNTFNLLAQWREHGLDAILK 108 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECC-chHHHHHHHHHHcCHHHHHH
Confidence 456688875432 3456778899999 99888765 2 34578999999999 56777888888788899999
Q ss_pred HHHhCCCCEEEEechHHHHhhhcc-------cC-CCcCCCcccCceee
Q 045794 115 AYIEKDRPFLGICLGLQLLFQSSE-------EN-GPVNGLGLIPGVVG 154 (578)
Q Consensus 115 ~~~~~g~PIlGIClG~QlLa~a~~-------e~-~~~~Glgl~~~~v~ 154 (578)
++.++++|++|+|.|+|+|+..+. +. ....|||++|+.+.
T Consensus 109 ~~~~~g~~i~G~SAGa~i~~~~~~~~~~~~~e~~~~~~GLGll~~~v~ 156 (212)
T cd03146 109 AALERGVVYIGWSAGSNCWFPSIGTTDSMPIELPPSFNGLGLLPFQIC 156 (212)
T ss_pred HHHHCCCEEEEECHhHHhhCCCccccCCCCCccccccceecCcCcccc
Confidence 988899999999999999999521 22 24578888887653
No 183
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.61 E-value=1.2e-07 Score=94.87 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=76.8
Q ss_pred CH-HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 479 GA-YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 479 ~~-~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
++ ++.++.+++.|++++=+.|. ... |.++++++.+.+++||.++|||++ ++++++++ .||+.|++||++..
T Consensus 38 ~pp~~~A~~~~~~Ga~~lHvVDL-----g~~-n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l~-aGa~rVvIGS~av~ 109 (253)
T TIGR02129 38 KPSSYYAKLYKDDGVKGCHVIML-----GPN-NDDAAKEALHAYPGGLQVGGGIND-TNAQEWLD-EGASHVIVTSWLFT 109 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEC-----CCC-cHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHHH-cCCCEEEECcHHHh
Confidence 46 99999999999999999999 233 999999999999999999999997 99999996 99999999999987
Q ss_pred C----CCCHHHHHHHHHhCCCee
Q 045794 558 K----EVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 558 ~----~~~~~~~~~~l~~~~i~v 576 (578)
. +-.++++.+.+.++.|.|
T Consensus 110 ~~~i~~~~~~~i~~~fG~~~Ivv 132 (253)
T TIGR02129 110 KGKFDLKRLKEIVSLVGKDRLIV 132 (253)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEE
Confidence 6 334666666666665654
No 184
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.61 E-value=2.5e-07 Score=98.53 Aligned_cols=126 Identities=18% Similarity=0.218 Sum_probs=93.6
Q ss_pred hHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccC
Q 045794 376 SLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDL 455 (578)
Q Consensus 376 ~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~ 455 (578)
+++.++.+.++|+|.|+|.++.-. .. .+ .++++++.++|+...|++ =
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~g~-~~-~~-------~~~v~~ik~~~p~~~vi~-g----------------------- 200 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAHGH-ST-RI-------IELVKKIKTKYPNLDLIA-G----------------------- 200 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC-Ch-hH-------HHHHHHHHhhCCCCcEEE-E-----------------------
Confidence 467899999999999999876643 22 22 378899999996544433 1
Q ss_pred CCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC-------CCCC-CCHHHH---HHHHhhCCCc
Q 045794 456 GPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG-------QGKG-FDMDLI---KLISDAVSIP 524 (578)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG-------~~~G-~d~~li---~~l~~~~~ip 524 (578)
++...+.++.+.++|++.|.+ .+.... +..| |++..+ .++.+..++|
T Consensus 201 ---------------------~V~T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vp 258 (404)
T PRK06843 201 ---------------------NIVTKEAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNIC 258 (404)
T ss_pred ---------------------ecCCHHHHHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCe
Confidence 334578899999999999884 433211 1223 567655 4444456899
Q ss_pred EEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 525 VIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 525 VIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
||+.|||.+..|+.+++. +||++|++|++|..
T Consensus 259 VIAdGGI~~~~Di~KALa-lGA~aVmvGs~~ag 290 (404)
T PRK06843 259 IIADGGIRFSGDVVKAIA-AGADSVMIGNLFAG 290 (404)
T ss_pred EEEeCCCCCHHHHHHHHH-cCCCEEEEcceeee
Confidence 999999999999999996 99999999999965
No 185
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=98.60 E-value=6.9e-07 Score=89.23 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCCCCCC--CCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 478 IGAYELAKAVEDLGAGEILLNCIDCDGQGK--GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 478 ~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~--G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
.+..++++.+++.|++.|-+. .+.. ..|++.+++++ +++|||++|||.+.+|+.++++ .|||+|++|++
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~-----~~~~g~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~-~GaD~VmiGR~- 222 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVD-----AMDPGNHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFS-YGADMVSVARA- 222 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEEC-----cCCCCCCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHH-cCCCEEEEcCC-
Confidence 367899999999999964332 2232 45999999987 6899999999999999999996 89999999999
Q ss_pred ccCCCCHHHHH
Q 045794 556 HRKEVPIQSVK 566 (578)
Q Consensus 556 ~~~~~~~~~~~ 566 (578)
..+|.+.+++
T Consensus 223 -~~p~~~~~~~ 232 (233)
T cd02911 223 -SLPENIEWLV 232 (233)
T ss_pred -CCchHHHHhh
Confidence 7888888765
No 186
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.59 E-value=3.8e-07 Score=99.83 Aligned_cols=191 Identities=18% Similarity=0.201 Sum_probs=126.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHh-----hhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTS-----ENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~-----~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+..++.+.+.+.+...+.++|=++..-|-.. .-++++.+. +.-.-.+.+||.+..-++ +++.++
T Consensus 161 ~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT---~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~-------~~~r~~ 230 (450)
T TIGR01302 161 IDLEEALKVLHEHRIEKLPVVDKNGELVGLIT---MKDIVKRRKFPHASKDENGRLIVGAAVGTREF-------DKERAE 230 (450)
T ss_pred CcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEE---hHHhhhcccCCcceEeCCCCEEEEEEecCchh-------HHHHHH
Confidence 34567888888899999999986542111111 122232221 111235667777765333 467899
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
.+.++|++.|+|.++--. .+.. .+.++++.+.|++.-|++ +
T Consensus 231 ~L~~aG~d~I~vd~a~g~-~~~~--------~~~i~~i~~~~~~~~vi~------G------------------------ 271 (450)
T TIGR01302 231 ALVKAGVDVIVIDSSHGH-SIYV--------IDSIKEIKKTYPDLDIIA------G------------------------ 271 (450)
T ss_pred HHHHhCCCEEEEECCCCc-HhHH--------HHHHHHHHHhCCCCCEEE------E------------------------
Confidence 999999999999774432 1222 378999999996433333 1
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCC-CCHHHHHHHHh---hCCCcEEEecCC
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKG-FDMDLIKLISD---AVSIPVIASSGA 531 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G-~d~~li~~l~~---~~~ipVIasGGi 531 (578)
++...+-++.+.+.|++.|.+. ..++.-+.-| |.+.++.++++ ..++|||+.|||
T Consensus 272 ---------------~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi 336 (450)
T TIGR01302 272 ---------------NVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGI 336 (450)
T ss_pred ---------------eCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCC
Confidence 2334678889999999998653 1222222223 45666666643 458999999999
Q ss_pred CCHHHHHHHHHhcCchHHhhhhhhccCCCCH
Q 045794 532 GAVEHFSDVFRKTNASAALAAGIFHRKEVPI 562 (578)
Q Consensus 532 ~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~ 562 (578)
.+..|+.+++. .||++||+|++|.......
T Consensus 337 ~~~~di~kAla-~GA~~V~~G~~~a~~~e~p 366 (450)
T TIGR01302 337 RYSGDIVKALA-AGADAVMLGSLLAGTTESP 366 (450)
T ss_pred CCHHHHHHHHH-cCCCEEEECchhhcCCcCC
Confidence 99999999996 9999999999997655444
No 187
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.59 E-value=2.7e-06 Score=83.35 Aligned_cols=176 Identities=19% Similarity=0.213 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHH---hhhccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLT---SENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i---~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
.+..+.++...+.|++.+|+-.-+.. .......++++ +...++++.+- ++ ++.+
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------~~-----------~~~a 77 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKGLD------TRERLELARALKELCRRYGVPLIVN------DR-----------VDLA 77 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCCCC------HHHHHHHHHHHHHHHHHhCCeEEEe------Ch-----------HHHH
Confidence 35778888888999999986533321 12334444444 44457778652 22 7888
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.++|++.|.++..... ...+....+.. +.+++-+
T Consensus 78 ~~~gad~vh~~~~~~~----------------~~~~~~~~~~~-~~~g~~~----------------------------- 111 (212)
T PRK00043 78 LAVGADGVHLGQDDLP----------------VADARALLGPD-AIIGLST----------------------------- 111 (212)
T ss_pred HHcCCCEEecCcccCC----------------HHHHHHHcCCC-CEEEEeC-----------------------------
Confidence 9999999988654221 12222222222 2222211
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC----CHHHHHHHHhhCC-CcEEEecCCCCHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF----DMDLIKLISDAVS-IPVIASSGAGAVEHFS 538 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~----d~~li~~l~~~~~-ipVIasGGi~s~eDi~ 538 (578)
. + .+.+.++.+.|++.|.+..+...++..+. .++.++++++..+ +||++.||| +.+++.
T Consensus 112 -------------~-t-~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~ 175 (212)
T PRK00043 112 -------------H-T-LEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAP 175 (212)
T ss_pred -------------C-C-HHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHH
Confidence 1 2 23456666889999998766555544432 3889999988877 999999999 789999
Q ss_pred HHHHhcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
++++ .|++++++|+++...+- +.+..+.|
T Consensus 176 ~~~~-~Ga~gv~~gs~i~~~~d-~~~~~~~l 204 (212)
T PRK00043 176 EVLE-AGADGVAVVSAITGAED-PEAAARAL 204 (212)
T ss_pred HHHH-cCCCEEEEeHHhhcCCC-HHHHHHHH
Confidence 9985 99999999999986554 43333333
No 188
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.59 E-value=1.5e-06 Score=86.85 Aligned_cols=92 Identities=23% Similarity=0.275 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 482 ELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 482 e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+.++++.+.|++.|+++.....|.... ..+++++++++.+++||+++|||.+.+++.++++ .|++||++||++...
T Consensus 113 ~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~-~GadgV~vgS~l~~~ 191 (236)
T cd04730 113 EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALA-LGADGVQMGTRFLAT 191 (236)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHH-cCCcEEEEchhhhcC
Confidence 556778889999999887755554433 2478999999888999999999999999999986 999999999998754
Q ss_pred CCC--HHHHHHHHHhCCC
Q 045794 559 EVP--IQSVKEHLYKEGI 574 (578)
Q Consensus 559 ~~~--~~~~~~~l~~~~i 574 (578)
.-. -.++|+.|.+...
T Consensus 192 ~e~~~~~~~~~~~~~~~~ 209 (236)
T cd04730 192 EESGASPAYKQALLAATA 209 (236)
T ss_pred cccCCCHHHHHHHHcCCC
Confidence 433 4577888877654
No 189
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.58 E-value=1.4e-06 Score=92.07 Aligned_cols=91 Identities=14% Similarity=0.185 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC-------------CCCCCCC-----CHHHHHHHHhhC--CCcEEEecCCCCHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC-------------DGQGKGF-----DMDLIKLISDAV--SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~-------------dG~~~G~-----d~~li~~l~~~~--~ipVIasGGi~s~eDi~ 538 (578)
++.++++.+++.|++.|++++... .|.++|+ .++.++++++.+ ++|||++|||.+.+|+.
T Consensus 226 ~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~ 305 (344)
T PRK05286 226 ELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAY 305 (344)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence 378999999999999999987542 2344553 567889998888 79999999999999999
Q ss_pred HHHHhcCchHHhhhhhhc-cCCCCHHHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFH-RKEVPIQSVKEHLY 570 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~-~~~~~~~~~~~~l~ 570 (578)
+.+. +||++|+++|++. .|+..+.++++.|.
T Consensus 306 e~l~-aGAd~V~v~~~~~~~gP~~~~~i~~~L~ 337 (344)
T PRK05286 306 EKIR-AGASLVQIYSGLIYEGPGLVKEIVRGLA 337 (344)
T ss_pred HHHH-cCCCHHHHHHHHHHhCchHHHHHHHHHH
Confidence 9996 9999999999985 46877776666554
No 190
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.57 E-value=3e-06 Score=83.00 Aligned_cols=189 Identities=17% Similarity=0.164 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+..+.++.+.+.|++.||+.=.|+..- .+-...++.++++++....|+.++==+++. .+.++.+.++|
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~--~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~----------~~~~~~~~~~g 79 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFV--PNLTFGPPVLEALRKYTDLPIDVHLMVENP----------DRYIEDFAEAG 79 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCC--CCcccCHHHHHHHHhcCCCcEEEEeeeCCH----------HHHHHHHHHcC
Confidence 455778888889999999842333211 112345788999987666776543233332 35688888999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
++.|++--..... . .+.+ +..+++|.+ +.+.++..
T Consensus 80 adgv~vh~~~~~~---~--------~~~~-~~~~~~g~~-~~~~~~~~-------------------------------- 114 (210)
T TIGR01163 80 ADIITVHPEASEH---I--------HRLL-QLIKDLGAK-AGIVLNPA-------------------------------- 114 (210)
T ss_pred CCEEEEccCCchh---H--------HHHH-HHHHHcCCc-EEEEECCC--------------------------------
Confidence 9998884322111 1 1233 333556643 44444311
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHH---HHHHHHhhCC-----CcEEEecCCCCHHHHHH
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMD---LIKLISDAVS-----IPVIASSGAGAVEHFSD 539 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~---li~~l~~~~~-----ipVIasGGi~s~eDi~~ 539 (578)
+..+.++++.. +++.+++..+...++.+..++. .++++++.++ +|+.+.|||+ .+.+.+
T Consensus 115 -----------t~~e~~~~~~~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~ 181 (210)
T TIGR01163 115 -----------TPLEFLEYVLP-DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARE 181 (210)
T ss_pred -----------CCHHHHHHHHh-hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHH
Confidence 22555666543 5888877665443344434444 4444444332 7999999995 799999
Q ss_pred HHHhcCchHHhhhhhhccCCCCHHHHHHH
Q 045794 540 VFRKTNASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
+.+ .|++++++||+++..+ ++++..+.
T Consensus 182 l~~-~gad~iivgsai~~~~-d~~~~~~~ 208 (210)
T TIGR01163 182 LAE-AGADILVAGSAIFGAD-DYKEVIRS 208 (210)
T ss_pred HHH-cCCCEEEEChHHhCCC-CHHHHHHH
Confidence 885 9999999999998655 55544433
No 191
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.55 E-value=1.2e-06 Score=90.39 Aligned_cols=87 Identities=24% Similarity=0.274 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCC----------------CCCCCC-----CHHHHHHHHhhC--CCcEEEecCCCCHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCD----------------GQGKGF-----DMDLIKLISDAV--SIPVIASSGAGAVE 535 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~d----------------G~~~G~-----d~~li~~l~~~~--~ipVIasGGi~s~e 535 (578)
+..++++.+++.|++.|.++..... |-+.|+ .++.++++++.+ ++|||++|||.+.+
T Consensus 177 ~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~ 256 (289)
T cd02810 177 DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGE 256 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHH
Confidence 3678999999999999998754321 112332 467889999888 89999999999999
Q ss_pred HHHHHHHhcCchHHhhhhhhccC-CCCHHHHH
Q 045794 536 HFSDVFRKTNASAALAAGIFHRK-EVPIQSVK 566 (578)
Q Consensus 536 Di~~l~~~~G~~gv~vgsa~~~~-~~~~~~~~ 566 (578)
|+.+++. .||++|++|+++... +..+.+++
T Consensus 257 da~~~l~-~GAd~V~vg~a~~~~GP~~~~~i~ 287 (289)
T cd02810 257 DVLEMLM-AGASAVQVATALMWDGPDVIRKIK 287 (289)
T ss_pred HHHHHHH-cCccHheEcHHHHhcCccHHHHHh
Confidence 9999996 999999999998765 87776655
No 192
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.54 E-value=1.6e-06 Score=91.46 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCC-------------CCCCCC-----HHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDG-------------QGKGFD-----MDLIKLISDAVSIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG-------------~~~G~d-----~~li~~l~~~~~ipVIasGGi~s~eDi~~l 540 (578)
++.++++.+++.|++.|++++..... -++|+. ++.+.++++.+++|||++|||.+.+|+.+.
T Consensus 178 ~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~ 257 (334)
T PRK07565 178 NLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKM 257 (334)
T ss_pred hHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHH
Confidence 46899999999999999987653211 123332 466777878889999999999999999999
Q ss_pred HHhcCchHHhhhhhhcc-CCCC----HHHHHHHHHhCCC
Q 045794 541 FRKTNASAALAAGIFHR-KEVP----IQSVKEHLYKEGI 574 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~-~~~~----~~~~~~~l~~~~i 574 (578)
+. +||++|+++++++. |+-. .++++++|.+.|+
T Consensus 258 l~-aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~l~~~g~ 295 (334)
T PRK07565 258 LL-AGADVVMIASALLRHGPDYIGTILRGLEDWMERHGY 295 (334)
T ss_pred HH-cCCCceeeehHHhhhCcHHHHHHHHHHHHHHHHcCC
Confidence 96 99999999999876 4433 4566677777665
No 193
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.51 E-value=3.4e-06 Score=81.71 Aligned_cols=158 Identities=13% Similarity=0.155 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeC-CccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGG-GIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gG-Gir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+..++++.+.+.|++.+- ++++. ....+.|+.+.+... .+.+|+ -|-+.+ .++.+++
T Consensus 16 ~~~~~~~~~l~~~G~~~ve-v~~~~--------~~~~~~i~~l~~~~~-~~~iGag~v~~~~-----------~~~~a~~ 74 (190)
T cd00452 16 EDALALAEALIEGGIRAIE-ITLRT--------PGALEAIRALRKEFP-EALIGAGTVLTPE-----------QADAAIA 74 (190)
T ss_pred HHHHHHHHHHHHCCCCEEE-EeCCC--------hhHHHHHHHHHHHCC-CCEEEEEeCCCHH-----------HHHHHHH
Confidence 4777899999999999655 44443 224678899888764 255554 455454 4999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|++.++.+... +++ .+.++++|. .+++.
T Consensus 75 ~Ga~~i~~p~~~---------------~~~-~~~~~~~~~-~~i~g---------------------------------- 103 (190)
T cd00452 75 AGAQFIVSPGLD---------------PEV-VKAANRAGI-PLLPG---------------------------------- 103 (190)
T ss_pred cCCCEEEcCCCC---------------HHH-HHHHHHcCC-cEECC----------------------------------
Confidence 999999876321 133 344566653 23331
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
++..+-+.++.+.|++.+-++..+. ...+.++.+++.. ++|+++.||| +.+.+.++++ .
T Consensus 104 ------------v~t~~e~~~A~~~Gad~i~~~p~~~------~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~-~ 163 (190)
T cd00452 104 ------------VATPTEIMQALELGADIVKLFPAEA------VGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLA-A 163 (190)
T ss_pred ------------cCCHHHHHHHHHCCCCEEEEcCCcc------cCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHH-C
Confidence 1123446677789999998854211 1456788887766 5999999999 9999999996 8
Q ss_pred CchHHhhhhhhc
Q 045794 545 NASAALAAGIFH 556 (578)
Q Consensus 545 G~~gv~vgsa~~ 556 (578)
|++++.++++++
T Consensus 164 G~~~v~v~s~i~ 175 (190)
T cd00452 164 GVVAVGGGSLLP 175 (190)
T ss_pred CCEEEEEchhcc
Confidence 999999999987
No 194
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=98.49 E-value=2.7e-06 Score=89.27 Aligned_cols=95 Identities=16% Similarity=0.166 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCC-------------CCCCCC-----CHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCD-------------GQGKGF-----DMDLIKLISDAVSIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~d-------------G~~~G~-----d~~li~~l~~~~~ipVIasGGi~s~eDi~~l 540 (578)
++.++++.+++.|++.|++++.... +.++|+ -++.++++++.+++|||++|||.+.+|+.+.
T Consensus 176 ~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~ 255 (325)
T cd04739 176 ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKY 255 (325)
T ss_pred CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHH
Confidence 5789999999999999998875311 223333 2467788888889999999999999999999
Q ss_pred HHhcCchHHhhhhhhcc-CCCC----HHHHHHHHHhCCC
Q 045794 541 FRKTNASAALAAGIFHR-KEVP----IQSVKEHLYKEGI 574 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~-~~~~----~~~~~~~l~~~~i 574 (578)
+. +||++|++++++.. |+.. .++++++|.+.|+
T Consensus 256 l~-aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~ 293 (325)
T cd04739 256 LL-AGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGY 293 (325)
T ss_pred HH-cCCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCC
Confidence 96 99999999999876 5543 4566777777775
No 195
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.48 E-value=2.9e-06 Score=85.33 Aligned_cols=183 Identities=24% Similarity=0.253 Sum_probs=120.7
Q ss_pred cCCHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
..||.++|+.|.+.||+.|.|+ |-.-+ +-+++.++.+++.+.+|+-- ++ ||--. -++.+..
T Consensus 67 ~~d~~~~a~~y~~~GA~aiSVlTe~~~F-------~Gs~~dL~~v~~~~~~PvL~----KD------FIid~-~QI~eA~ 128 (254)
T PF00218_consen 67 DFDPAEIAKAYEEAGAAAISVLTEPKFF-------GGSLEDLRAVRKAVDLPVLR----KD------FIIDP-YQIYEAR 128 (254)
T ss_dssp S-SHHHHHHHHHHTT-SEEEEE--SCCC-------HHHHHHHHHHHHHSSS-EEE----ES---------SH-HHHHHHH
T ss_pred cCCHHHHHHHHHhcCCCEEEEECCCCCC-------CCCHHHHHHHHHHhCCCccc----cc------CCCCH-HHHHHHH
Confidence 4699999999999999999874 54443 22477788888889999965 33 22222 3366677
Q ss_pred HcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
.+|||-|.+=...+.+. .+ ..+-+.+...|-+.+| - |
T Consensus 129 ~~GADaVLLI~~~L~~~--~l--------~~l~~~a~~lGle~lV---E------------------V------------ 165 (254)
T PF00218_consen 129 AAGADAVLLIAAILSDD--QL--------EELLELAHSLGLEALV---E------------------V------------ 165 (254)
T ss_dssp HTT-SEEEEEGGGSGHH--HH--------HHHHHHHHHTT-EEEE---E------------------E------------
T ss_pred HcCCCEeehhHHhCCHH--HH--------HHHHHHHHHcCCCeEE---E------------------E------------
Confidence 88999999877777632 22 2334555668854322 1 1
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~ 542 (578)
+ + .+-++.+.+.|++-|-+++++-.- -..|++...++.... ++-+|+.+||.+++|+..+.+
T Consensus 166 -----h--------~-~~El~~al~~~a~iiGINnRdL~t--f~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~ 229 (254)
T PF00218_consen 166 -----H--------N-EEELERALEAGADIIGINNRDLKT--FEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLAR 229 (254)
T ss_dssp -----S--------S-HHHHHHHHHTT-SEEEEESBCTTT--CCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCT
T ss_pred -----C--------C-HHHHHHHHHcCCCEEEEeCccccC--cccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHH
Confidence 1 1 334556668899988888876652 235777777777655 478999999999999999984
Q ss_pred hcCchHHhhhhhhccCCCCHHHHH
Q 045794 543 KTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
.|++|++||+++...+.+-..++
T Consensus 230 -~G~davLVGe~lm~~~d~~~~~~ 252 (254)
T PF00218_consen 230 -AGADAVLVGEALMRSPDPGEALR 252 (254)
T ss_dssp -TT-SEEEESHHHHTSSSHHHHHH
T ss_pred -CCCCEEEECHHHhCCCCHHHHHh
Confidence 99999999999998776444443
No 196
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.47 E-value=3.6e-07 Score=88.99 Aligned_cols=67 Identities=27% Similarity=0.232 Sum_probs=56.5
Q ss_pred HHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCccee
Q 045794 312 LARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKI 391 (578)
Q Consensus 312 ~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~v 391 (578)
+|..-+..|++++|+.|++++. ...+.++++++++.+++|+++|||||+.|+ ++++++.|||+|
T Consensus 139 ~a~aa~~~G~~~i~Le~~sGa~-----~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~-----------a~~l~~~GAD~V 202 (205)
T TIGR01769 139 YCLAAKYFGMKWVYLEAGSGAS-----YPVNPETISLVKKASGIPLIVGGGIRSPEI-----------AYEIVLAGADAI 202 (205)
T ss_pred HHHHHHHcCCCEEEEEcCCCCC-----CCCCHHHHHHHHHhhCCCEEEeCCCCCHHH-----------HHHHHHcCCCEE
Confidence 3344445699999999999972 134589999999999999999999999876 999999999999
Q ss_pred ecc
Q 045794 392 SIG 394 (578)
Q Consensus 392 v~g 394 (578)
|+|
T Consensus 203 VVG 205 (205)
T TIGR01769 203 VTG 205 (205)
T ss_pred EeC
Confidence 987
No 197
>PLN02334 ribulose-phosphate 3-epimerase
Probab=98.46 E-value=9e-06 Score=81.10 Aligned_cols=183 Identities=15% Similarity=0.155 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+..+.++...+.|++++|+=..|+... .+..-..++++++++.+..++.+-==|.+.+| .++.++++|
T Consensus 21 ~l~~~l~~~~~~g~~~ihld~~d~~f~--~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d----------~~~~~~~~g 88 (229)
T PLN02334 21 NLAEEAKRVLDAGADWLHVDVMDGHFV--PNLTIGPPVVKALRKHTDAPLDCHLMVTNPED----------YVPDFAKAG 88 (229)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCcC--CccccCHHHHHHHHhcCCCcEEEEeccCCHHH----------HHHHHHHcC
Confidence 445677778888999999833333211 11111125667776655444433323444433 477889999
Q ss_pred cceeecchh-hhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 388 ADKISIGSD-AVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 388 a~~vv~gt~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|+.|.+--. +..+.+ .+.++++. .+|. ++-+++ ..
T Consensus 89 ad~v~vH~~q~~~d~~----------~~~~~~i~-~~g~-~iGls~--~~------------------------------ 124 (229)
T PLN02334 89 ASIFTFHIEQASTIHL----------HRLIQQIK-SAGM-KAGVVL--NP------------------------------ 124 (229)
T ss_pred CCEEEEeeccccchhH----------HHHHHHHH-HCCC-eEEEEE--CC------------------------------
Confidence 999955222 111111 13445543 3442 233332 11
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcC-CcEEEEeccCCCCCCCCC---CHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLG-AGEILLNCIDCDGQGKGF---DMDLIKLISDA-VSIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G-~~~ii~tdi~~dG~~~G~---d~~li~~l~~~-~~ipVIasGGi~s~eDi~~l~ 541 (578)
-++.+.++.+.+.| ++.|++..+....+.+.. .++.++++++. .++||.+-||| +.+.+.++.
T Consensus 125 -----------~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~ 192 (229)
T PLN02334 125 -----------GTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAA 192 (229)
T ss_pred -----------CCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHH
Confidence 13466777777764 999988877643333323 34667777665 35899999999 789999998
Q ss_pred HhcCchHHhhhhhhccCC
Q 045794 542 RKTNASAALAAGIFHRKE 559 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~ 559 (578)
+ .|++++++||++...+
T Consensus 193 ~-aGad~vvvgsai~~~~ 209 (229)
T PLN02334 193 E-AGANVIVAGSAVFGAP 209 (229)
T ss_pred H-cCCCEEEEChHHhCCC
Confidence 5 9999999999998654
No 198
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.45 E-value=2.1e-06 Score=94.89 Aligned_cols=188 Identities=18% Similarity=0.212 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh-----hccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE-----NVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~-----~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+..++++.+.+.+.+.+.++|=++..-+- -.-.++++.+.. ...-.+.+|+.|....+ +++.++
T Consensus 165 ~sl~eal~~m~~~~~~~lpVVDe~g~lvGi---IT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~-------~~e~a~ 234 (486)
T PRK05567 165 TTLEEALELLHEHRIEKLPVVDDNGRLKGL---ITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGAD-------NEERAE 234 (486)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEE---EEhHHhhhhhhCCCcccccCCCEEEEeecccCcc-------hHHHHH
Confidence 355678888899999999999865421111 111233333321 11235677888875332 478899
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
.++++|++.+++.++--. .... .+.++++.++|++--|++ +
T Consensus 235 ~L~~agvdvivvD~a~g~-~~~v--------l~~i~~i~~~~p~~~vi~------g------------------------ 275 (486)
T PRK05567 235 ALVEAGVDVLVVDTAHGH-SEGV--------LDRVREIKAKYPDVQIIA------G------------------------ 275 (486)
T ss_pred HHHHhCCCEEEEECCCCc-chhH--------HHHHHHHHhhCCCCCEEE------e------------------------
Confidence 999999998888765222 1222 367888888885333333 1
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCC-CCHHHHHHHHhh---CCCcEEEecCC
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKG-FDMDLIKLISDA---VSIPVIASSGA 531 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G-~d~~li~~l~~~---~~ipVIasGGi 531 (578)
++...+-++.+.+.|++.|.+- ..++.-+..| |+++.+.++++. .++|||+.|||
T Consensus 276 ---------------~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi 340 (486)
T PRK05567 276 ---------------NVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGI 340 (486)
T ss_pred ---------------ccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCC
Confidence 2334678888999999988641 1122212233 578888777664 47999999999
Q ss_pred CCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 532 GAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 532 ~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
++..|+.+++. +||+.||+|++|....
T Consensus 341 ~~~~di~kAla-~GA~~v~~G~~~a~~~ 367 (486)
T PRK05567 341 RYSGDIAKALA-AGASAVMLGSMLAGTE 367 (486)
T ss_pred CCHHHHHHHHH-hCCCEEEECccccccc
Confidence 99999999996 9999999999996543
No 199
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.43 E-value=1.5e-06 Score=91.13 Aligned_cols=88 Identities=23% Similarity=0.299 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCC---------CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQG---------KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAA 549 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~---------~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv 549 (578)
+..++++.+++.|++.|-++........ .+.+++.++.+++.+++||+++||+.+.+++.++++..+||.|
T Consensus 229 e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V 308 (327)
T cd02803 229 EAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLV 308 (327)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCee
Confidence 4578899999999999988876544322 2557899999999999999999999999999999975589999
Q ss_pred hhhhhhccCCCCHHHHH
Q 045794 550 LAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 550 ~vgsa~~~~~~~~~~~~ 566 (578)
++|+++..++..+..++
T Consensus 309 ~igR~~ladP~l~~k~~ 325 (327)
T cd02803 309 ALGRALLADPDLPNKAR 325 (327)
T ss_pred eecHHHHhCccHHHHHh
Confidence 99999988876555443
No 200
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.43 E-value=7.2e-06 Score=79.86 Aligned_cols=178 Identities=17% Similarity=0.183 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhh-ccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSEN-VFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+..++++.+.+. ++.+=+ -+..... .+ ++.|+.+++. .++|+.+.+=+.+... ..++.+.++
T Consensus 14 ~~~~~~~~l~~~-i~~iei-g~~~~~~--~g----~~~i~~i~~~~~~~~i~~~~~v~~~~~---------~~~~~~~~a 76 (202)
T cd04726 14 EALELAKKVPDG-VDIIEA-GTPLIKS--EG----MEAVRALREAFPDKIIVADLKTADAGA---------LEAEMAFKA 76 (202)
T ss_pred HHHHHHHHhhhc-CCEEEc-CCHHHHH--hC----HHHHHHHHHHCCCCEEEEEEEeccccH---------HHHHHHHhc
Confidence 566788887766 554332 1111111 11 5778888876 3677765544554421 337889999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|++.+++-.....+ .. .++++. ++++|- ++++.+- .
T Consensus 77 Gad~i~~h~~~~~~---~~-------~~~i~~-~~~~g~-~~~v~~~--~------------------------------ 112 (202)
T cd04726 77 GADIVTVLGAAPLS---TI-------KKAVKA-AKKYGK-EVQVDLI--G------------------------------ 112 (202)
T ss_pred CCCEEEEEeeCCHH---HH-------HHHHHH-HHHcCC-eEEEEEe--C------------------------------
Confidence 99999985433211 11 133443 455663 2332211 0
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC-CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG-KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTN 545 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~-~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G 545 (578)
.-++.+..+ +.+.|++.+.++-....++. .....+.++++.+..++|+++.|||+ ++++.++++ .|
T Consensus 113 ----------~~t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~-~~~i~~~~~-~G 179 (202)
T cd04726 113 ----------VEDPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGIT-PDTLPEFKK-AG 179 (202)
T ss_pred ----------CCCHHHHHH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcC-HHHHHHHHh-cC
Confidence 124556665 77889998887432222333 23457888888876789999999995 999999985 89
Q ss_pred chHHhhhhhhccCC
Q 045794 546 ASAALAAGIFHRKE 559 (578)
Q Consensus 546 ~~gv~vgsa~~~~~ 559 (578)
++++++||++....
T Consensus 180 ad~vvvGsai~~~~ 193 (202)
T cd04726 180 ADIVIVGRAITGAA 193 (202)
T ss_pred CCEEEEeehhcCCC
Confidence 99999999997644
No 201
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=98.43 E-value=7.6e-06 Score=81.56 Aligned_cols=188 Identities=24% Similarity=0.271 Sum_probs=131.6
Q ss_pred EEecCCHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 303 VRNLGKPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 303 ~~~~~~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+...||+++|+.|.+.||..|.|+ |=.-+++ +.+.++.+++.+.+||-.-==|-+ .-.+.
T Consensus 62 ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~G-------s~e~L~~v~~~v~~PvL~KDFiiD-----------~yQI~ 123 (254)
T COG0134 62 IREDFDPVEIAKAYEEGGAAAISVLTDPKYFQG-------SFEDLRAVRAAVDLPVLRKDFIID-----------PYQIY 123 (254)
T ss_pred ccccCCHHHHHHHHHHhCCeEEEEecCccccCC-------CHHHHHHHHHhcCCCeeeccCCCC-----------HHHHH
Confidence 4445799999999999999999875 4444322 267788888899999953222222 24477
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
+...+|||.|-+=...+.+. .+ +-+-+.+..+|-+ +.+.+.
T Consensus 124 ~Ar~~GADavLLI~~~L~~~-~l---------~el~~~A~~LGm~-~LVEVh---------------------------- 164 (254)
T COG0134 124 EARAAGADAVLLIVAALDDE-QL---------EELVDRAHELGME-VLVEVH---------------------------- 164 (254)
T ss_pred HHHHcCcccHHHHHHhcCHH-HH---------HHHHHHHHHcCCe-eEEEEC----------------------------
Confidence 88889999988866667642 12 2233445667754 222221
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHH
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~ 539 (578)
+ .+-++++.+.|+.-|=+++++-.. --.|++...+++... +.-+|...||.+++|+.+
T Consensus 165 -----------------~-~eEl~rAl~~ga~iIGINnRdL~t--f~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~ 224 (254)
T COG0134 165 -----------------N-EEELERALKLGAKIIGINNRDLTT--LEVDLETTEKLAPLIPKDVILISESGISTPEDVRR 224 (254)
T ss_pred -----------------C-HHHHHHHHhCCCCEEEEeCCCcch--heecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHH
Confidence 1 344555566999877788776542 235778888887765 367899999999999999
Q ss_pred HHHhcCchHHhhhhhhccCCCCHHHHHHH
Q 045794 540 VFRKTNASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
+.+ .|++|++||+++...+..-+.+++.
T Consensus 225 l~~-~ga~a~LVG~slM~~~~~~~a~~~l 252 (254)
T COG0134 225 LAK-AGADAFLVGEALMRADDPEEALREL 252 (254)
T ss_pred HHH-cCCCEEEecHHHhcCCCHHHHHHHh
Confidence 985 9999999999999888765555443
No 202
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.42 E-value=3e-06 Score=93.55 Aligned_cols=188 Identities=15% Similarity=0.196 Sum_probs=120.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHH-----hhhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLT-----SENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i-----~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+..+..+.+.+.+...+-++|=++..-+-..+ -++++.. ++.-.-.+.||.-+..-.+ .++.++
T Consensus 178 ~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~---~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~-------~~~~~~ 247 (495)
T PTZ00314 178 ISLEEANEVLRESRKGKLPIVNDNGELVALVSR---SDLKKNRGYPNASLDSNGQLLVGAAISTRPE-------DIERAA 247 (495)
T ss_pred CCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEe---hHhhhcccCchhhhccCCCEEEEEEECCCHH-------HHHHHH
Confidence 355678888899999999998854321111000 1111111 1111234566654443222 368899
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
.+.++|++.|+|.++--.. + + .++.++++.+.|+.-.|++ +
T Consensus 248 ~l~~ag~d~i~id~a~G~s-~-~-------~~~~i~~ik~~~~~~~v~a------G------------------------ 288 (495)
T PTZ00314 248 ALIEAGVDVLVVDSSQGNS-I-Y-------QIDMIKKLKSNYPHVDIIA------G------------------------ 288 (495)
T ss_pred HHHHCCCCEEEEecCCCCc-h-H-------HHHHHHHHHhhCCCceEEE------C------------------------
Confidence 9999999999998742221 1 1 1378999999886333332 1
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCC-CCHHHHHHH---HhhCCCcEEEecCC
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKG-FDMDLIKLI---SDAVSIPVIASSGA 531 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G-~d~~li~~l---~~~~~ipVIasGGi 531 (578)
++...+-++.+.++|++.|.+. ..++.-+.-| |.+..+.++ ++..++|||+.|||
T Consensus 289 ---------------~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi 353 (495)
T PTZ00314 289 ---------------NVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGI 353 (495)
T ss_pred ---------------CcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCC
Confidence 2233678889999999988641 1223222233 456665444 44458999999999
Q ss_pred CCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 532 GAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 532 ~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
.+..|+.+++. .||++||+|++|....
T Consensus 354 ~~~~di~kAla-~GA~~Vm~G~~~a~~~ 380 (495)
T PTZ00314 354 KNSGDICKALA-LGADCVMLGSLLAGTE 380 (495)
T ss_pred CCHHHHHHHHH-cCCCEEEECchhcccc
Confidence 99999999996 9999999999986543
No 203
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.41 E-value=4.2e-06 Score=84.15 Aligned_cols=185 Identities=18% Similarity=0.274 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEec---ccCCCCCCCCc-------------hhHHHHHHHhhhccccEEEeCCccccccCCC
Q 045794 308 KPVELARQYYKEGADEISFLNI---TGFRDFPLGDL-------------PMLQVLRLTSENVFVPLTVGGGIRDFTDANG 371 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl---~~~~~~~~~~~-------------~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~ 371 (578)
.-.+.++.+.+.|+|.||+ |+ |...||+.-+. .-+++++++++.+.+|+.+=.-.+-+
T Consensus 15 ~~~~~~~~l~~~Gad~iel-~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~----- 88 (242)
T cd04724 15 TTLEILKALVEAGADIIEL-GIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPI----- 88 (242)
T ss_pred HHHHHHHHHHHCCCCEEEE-CCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHH-----
Confidence 4457888999999999994 42 11223322111 34678888887778886432111110
Q ss_pred CccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceee
Q 045794 372 RHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVR 451 (578)
Q Consensus 372 ~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~ 451 (578)
+.+.-.+-++++.++|++.+++--.-.++ . +.+.+..+++|-+.+.+ +-
T Consensus 89 ~~~G~~~fi~~~~~aG~~giiipDl~~ee---~---------~~~~~~~~~~g~~~i~~-i~------------------ 137 (242)
T cd04724 89 LQYGLERFLRDAKEAGVDGLIIPDLPPEE---A---------EEFREAAKEYGLDLIFL-VA------------------ 137 (242)
T ss_pred HHhCHHHHHHHHHHCCCcEEEECCCCHHH---H---------HHHHHHHHHcCCcEEEE-eC------------------
Confidence 00001133788889999999984332221 1 22344456677543332 21
Q ss_pred eccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC-CCCCCCC--CC-HHHHHHHHhhCCCcEEE
Q 045794 452 VTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID-CDGQGKG--FD-MDLIKLISDAVSIPVIA 527 (578)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~-~dG~~~G--~d-~~li~~l~~~~~ipVIa 527 (578)
..+..+.++.+.+...+.+.++.+. ..|..++ .+ .+.++++++..++||++
T Consensus 138 -------------------------P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~v 192 (242)
T cd04724 138 -------------------------PTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAV 192 (242)
T ss_pred -------------------------CCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEE
Confidence 1234566777777666777766542 2233333 22 37788888888999999
Q ss_pred ecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 528 SSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 528 sGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
+|||++.++++++.+ . +||+++||++.
T Consensus 193 ggGI~~~e~~~~~~~-~-ADgvVvGSaiv 219 (242)
T cd04724 193 GFGISTPEQAAEVAK-Y-ADGVIVGSALV 219 (242)
T ss_pred EccCCCHHHHHHHHc-c-CCEEEECHHHH
Confidence 999999999999985 7 99999999985
No 204
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=98.41 E-value=3.7e-06 Score=88.14 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=90.5
Q ss_pred HHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCC
Q 045794 377 LEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLG 456 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~ 456 (578)
.+.++.++++|++.|++.+..-. ++.+ .++++++.+.++ +..++ + +
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~-~~~~--------~~~i~~ik~~~p-~v~Vi-~----G------------------- 141 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGH-SVYV--------IEMIKFIKKKYP-NVDVI-A----G------------------- 141 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCC-cHHH--------HHHHHHHHHHCC-CceEE-E----C-------------------
Confidence 57799999999999998764332 1222 367888888775 32222 1 1
Q ss_pred CCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCC-CCHHHHHHHHhhC---CCcEE
Q 045794 457 PNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKG-FDMDLIKLISDAV---SIPVI 526 (578)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G-~d~~li~~l~~~~---~ipVI 526 (578)
++...+.++.+.+.|++.|.+. ..++.-+..| +++.++.++.+.. ++|||
T Consensus 142 --------------------~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVI 201 (325)
T cd00381 142 --------------------NVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVI 201 (325)
T ss_pred --------------------CCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEE
Confidence 2234678899999999999873 1122111223 4777777776544 69999
Q ss_pred EecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 527 asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
++|||.+..|+.+++. +||++|++|+.|...+
T Consensus 202 A~GGI~~~~di~kAla-~GA~~VmiGt~fa~t~ 233 (325)
T cd00381 202 ADGGIRTSGDIVKALA-AGADAVMLGSLLAGTD 233 (325)
T ss_pred ecCCCCCHHHHHHHHH-cCCCEEEecchhcccc
Confidence 9999999999999996 9999999999986543
No 205
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=98.38 E-value=1.1e-05 Score=83.69 Aligned_cols=190 Identities=21% Similarity=0.207 Sum_probs=129.3
Q ss_pred EEecCCHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhh-ccccEEEeCCccccccCCCCccChHHHH
Q 045794 303 VRNLGKPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSEN-VFVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 303 ~~~~~~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
.+..-||+++|+.|.+.||.-|.|+ |=+-+.+ .++.++++++. +.+||-- ++ ||.-. -.+
T Consensus 135 I~~~~dp~~iA~~Ye~~GA~aISVLTd~~~F~G-------s~e~L~~vr~~~v~lPvLr----KD------FIID~-yQI 196 (338)
T PLN02460 135 LRENFDPVEIAQAYEKGGAACLSVLTDEKYFQG-------SFENLEAIRNAGVKCPLLC----KE------FIVDA-WQI 196 (338)
T ss_pred cCCCCCHHHHHHHHHhCCCcEEEEecCcCcCCC-------CHHHHHHHHHcCCCCCEee----cc------ccCCH-HHH
Confidence 3444599999999999999999875 5544422 25667777776 8899953 22 22222 235
Q ss_pred HHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCC
Q 045794 381 SEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGE 460 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (578)
.+...+|||.|.+=.+.+.+ .++ ..+-+++..+|-+.+ | +|
T Consensus 197 ~eAr~~GADAVLLIaaiL~~-~~L---------~~l~~~A~~LGme~L-V--------------------EV-------- 237 (338)
T PLN02460 197 YYARSKGADAILLIAAVLPD-LDI---------KYMLKICKSLGMAAL-I--------------------EV-------- 237 (338)
T ss_pred HHHHHcCCCcHHHHHHhCCH-HHH---------HHHHHHHHHcCCeEE-E--------------------Ee--------
Confidence 66667899998887666763 222 334566677885532 2 11
Q ss_pred CcceEEEEEcccccCCCCCHHHHHHHHHHc-CCcEEEEeccCCCCCCCCCCHHHHHHHHh-----hC---CCcEEEecCC
Q 045794 461 EYAWYQCTVNGGREGRPIGAYELAKAVEDL-GAGEILLNCIDCDGQGKGFDMDLIKLISD-----AV---SIPVIASSGA 531 (578)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~-G~~~ii~tdi~~dG~~~G~d~~li~~l~~-----~~---~ipVIasGGi 531 (578)
+ + .+-++.+.+. |++-|-+++++-.. --.|++...++.. .. ++-+|+.+||
T Consensus 238 ---------H--------~-~~ElerAl~~~ga~iIGINNRdL~T--f~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI 297 (338)
T PLN02460 238 ---------H--------D-EREMDRVLGIEGVELIGINNRSLET--FEVDISNTKKLLEGERGEQIREKGIIVVGESGL 297 (338)
T ss_pred ---------C--------C-HHHHHHHHhcCCCCEEEEeCCCCCc--ceECHHHHHHHhhhccccccCCCCeEEEECCCC
Confidence 1 1 3344455565 88878788877652 2357777777765 11 3457899999
Q ss_pred CCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 532 GAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 532 ~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.+++|+..+.+ .|++||+||.++...+-+-..+++.+.
T Consensus 298 ~t~~Dv~~l~~-~GadAvLVGEsLMr~~dp~~~l~~L~~ 335 (338)
T PLN02460 298 FTPDDVAYVQN-AGVKAVLVGESLVKQDDPGKGIAGLFG 335 (338)
T ss_pred CCHHHHHHHHH-CCCCEEEECHHHhCCCCHHHHHHHHhC
Confidence 99999999985 999999999999988876666666653
No 206
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.38 E-value=9.2e-06 Score=84.28 Aligned_cols=174 Identities=18% Similarity=0.268 Sum_probs=116.2
Q ss_pred HHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC--
Q 045794 311 ELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG-- 387 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G-- 387 (578)
++|+...+.|.-.+..= |++. -.+.+++... ..+++-++-|+... .+|.+..++++|
T Consensus 49 ~LA~~a~~~G~~~i~hK~~~E~----------~~sfvrk~k~-~~L~v~~SvG~t~e---------~~~r~~~lv~a~~~ 108 (321)
T TIGR01306 49 KLAEQLAENGYFYIMHRFDEES----------RIPFIKDMQE-RGLFASISVGVKAC---------EYEFVTQLAEEALT 108 (321)
T ss_pred HHHHHHHHcCCEEEEecCCHHH----------HHHHHHhccc-cccEEEEEcCCCHH---------HHHHHHHHHhcCCC
Confidence 67888888776444432 2221 1122455432 24555555555543 268899999999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
+|.|++.++--.+ ..+ .+.++++.+.|+.--|++ |
T Consensus 109 ~d~i~~D~ahg~s--~~~-------~~~i~~i~~~~p~~~vi~----------------------------G-------- 143 (321)
T TIGR01306 109 PEYITIDIAHGHS--NSV-------INMIKHIKTHLPDSFVIA----------------------------G-------- 143 (321)
T ss_pred CCEEEEeCccCch--HHH-------HHHHHHHHHhCCCCEEEE----------------------------e--------
Confidence 7999998743332 122 377899998885321222 1
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCCC---CHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKGF---DMDLIKLISDAVSIPVIASSGAGAVEHFS 538 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G~---d~~li~~l~~~~~ipVIasGGi~s~eDi~ 538 (578)
++...+.++.+.+.|++.|.+. ..++.-+..|. .+..+.++++..++|||+.|||++-.|+.
T Consensus 144 ---------nV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~ 214 (321)
T TIGR01306 144 ---------NVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIA 214 (321)
T ss_pred ---------cCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHH
Confidence 2335789999999999998854 11222222232 45688888888899999999999999999
Q ss_pred HHHHhcCchHHhhhhhhccCC
Q 045794 539 DVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~ 559 (578)
+++. +||++|++|+.|....
T Consensus 215 KALa-~GAd~Vmig~~~ag~~ 234 (321)
T TIGR01306 215 KSIR-FGASMVMIGSLFAGHE 234 (321)
T ss_pred HHHH-cCCCEEeechhhcCcc
Confidence 9996 8999999999986433
No 207
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=98.38 E-value=1.7e-05 Score=76.98 Aligned_cols=171 Identities=17% Similarity=0.222 Sum_probs=111.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+..+.++...+.|++.+++-+-+.... .....+.-++.+++..++|+.+.. + ++-..+.
T Consensus 13 ~~~~~~~~~~~~~g~~~v~lR~~~~~~~---~~~~~~~~l~~~~~~~~~~l~i~~------~-----------~~la~~~ 72 (196)
T TIGR00693 13 ADLLNRVEAALKGGVTLVQLRDKGSNTR---ERLALAEKLQELCRRYGVPFIVND------R-----------VDLALAL 72 (196)
T ss_pred ccHHHHHHHHHhcCCCEEEEecCCCCHH---HHHHHHHHHHHHHHHhCCeEEEEC------H-----------HHHHHHc
Confidence 3567788888889999887754332100 011223344555555678998732 2 6677889
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|++.|-++..... ...+.+..+.. ..+++.+.
T Consensus 73 g~~GvHl~~~~~~----------------~~~~r~~~~~~-~~ig~s~h------------------------------- 104 (196)
T TIGR00693 73 GADGVHLGQDDLP----------------ASEARALLGPD-KIIGVSTH------------------------------- 104 (196)
T ss_pred CCCEEecCcccCC----------------HHHHHHhcCCC-CEEEEeCC-------------------------------
Confidence 9999999843332 12333333332 23333321
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC----CCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG----FDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G----~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~ 541 (578)
++.+ +.++.+.|++.+.+..+-..++..+ .+++.++++.+.. ++||++.||| +.+++.++.
T Consensus 105 ------------~~~e-~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~ 170 (196)
T TIGR00693 105 ------------NLEE-LAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVL 170 (196)
T ss_pred ------------CHHH-HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHH
Confidence 2234 4457788999998765544444333 3789999998765 5999999999 689999998
Q ss_pred HhcCchHHhhhhhhccCCC
Q 045794 542 RKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~~ 560 (578)
+ .|++||++++++...+-
T Consensus 171 ~-~G~~gva~~~~i~~~~d 188 (196)
T TIGR00693 171 A-AGADGVAVVSAIMQAAD 188 (196)
T ss_pred H-cCCCEEEEhHHhhCCCC
Confidence 5 99999999999986543
No 208
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=98.37 E-value=3e-06 Score=87.97 Aligned_cols=77 Identities=22% Similarity=0.144 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+.++.+.+.|++.|.++....-....|+ .++++.++++.+ ++|||++|||++..|+.+++. +||++|++|+.+..
T Consensus 183 ~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~-lGAd~V~ig~~~l~ 261 (299)
T cd02809 183 PEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALA-LGADAVLIGRPFLY 261 (299)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 56789999999999999763321122344 789999998877 499999999999999999996 99999999998875
Q ss_pred C
Q 045794 558 K 558 (578)
Q Consensus 558 ~ 558 (578)
.
T Consensus 262 ~ 262 (299)
T cd02809 262 G 262 (299)
T ss_pred H
Confidence 5
No 209
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.37 E-value=1.8e-05 Score=78.34 Aligned_cols=181 Identities=14% Similarity=0.225 Sum_probs=119.0
Q ss_pred CCHHH---HHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhh-ccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVE---LARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSEN-VFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~---~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.|+.. .++.+.+.|++++| +|+ |+..- .+-.--.++++.+++. +.+|+.+===+.+.+ .-++
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH-~DvmDG~Fv--pn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~----------~~i~ 75 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVH-FDVMDNHYV--PNLTFGAPICKALRDYGITAPIDVHLMVKPVD----------RIIP 75 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEE-EecccCccc--CccccCHHHHHHHHHhCCCCCEEEEeccCCHH----------HHHH
Confidence 34554 45566667999999 565 44211 1112225678888775 466655433445554 3578
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
.+.++||+.|.+=.++..+.. +.++.+ +..|- +.-+++...
T Consensus 76 ~~~~~gad~i~~H~Ea~~~~~-----------~~l~~i-k~~g~-k~GlalnP~-------------------------- 116 (220)
T PRK08883 76 DFAKAGASMITFHVEASEHVD-----------RTLQLI-KEHGC-QAGVVLNPA-------------------------- 116 (220)
T ss_pred HHHHhCCCEEEEcccCcccHH-----------HHHHHH-HHcCC-cEEEEeCCC--------------------------
Confidence 888999999999877655321 445555 44664 455555411
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC---CHHHHHHHHhhC-----CCcEEEecCCCC
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF---DMDLIKLISDAV-----SIPVIASSGAGA 533 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~---d~~li~~l~~~~-----~ipVIasGGi~s 533 (578)
++++.++.+.+. ++.|+++.+.-.-..+.+ .++.++++++.. ++|+.+-|||.
T Consensus 117 -----------------Tp~~~i~~~l~~-~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~- 177 (220)
T PRK08883 117 -----------------TPLHHLEYIMDK-VDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK- 177 (220)
T ss_pred -----------------CCHHHHHHHHHh-CCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-
Confidence 345566666554 899999988765444444 456677776654 38999999996
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
.+.+.++.+ .||+++++||++...+
T Consensus 178 ~eni~~l~~-aGAd~vVvGSaIf~~~ 202 (220)
T PRK08883 178 VDNIREIAE-AGADMFVAGSAIFGQP 202 (220)
T ss_pred HHHHHHHHH-cCCCEEEEeHHHhCCC
Confidence 899999985 9999999999987543
No 210
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=98.36 E-value=1.7e-05 Score=76.28 Aligned_cols=168 Identities=20% Similarity=0.286 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh---hccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE---NVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~---~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
.+..+.++.+.+.|++.+|+-+-+.. ...+...++++.+ ..++++.+ .+ + ++.+
T Consensus 12 ~~~~~~l~~l~~~g~~~i~lr~~~~~------~~~~~~~~~~i~~~~~~~~~~l~~----~~--~-----------~~~a 68 (196)
T cd00564 12 EDLLEVVEAALKGGVTLVQLREKDLS------ARELLELARALRELCRKYGVPLII----ND--R-----------VDLA 68 (196)
T ss_pred chHHHHHHHHHhcCCCEEEEeCCCCC------HHHHHHHHHHHHHHHHHhCCeEEE----eC--h-----------HHHH
Confidence 46778888888899999987654432 1344555555544 34677764 22 2 6678
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.+.|++.+-+...... ...+.+.++.. ..+++-+
T Consensus 69 ~~~g~~~vh~~~~~~~----------------~~~~~~~~~~~-~~~g~~~----------------------------- 102 (196)
T cd00564 69 LAVGADGVHLGQDDLP----------------VAEARALLGPD-LIIGVST----------------------------- 102 (196)
T ss_pred HHcCCCEEecCcccCC----------------HHHHHHHcCCC-CEEEeeC-----------------------------
Confidence 8999997766642211 12222223211 2222211
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC----CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG----KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~----~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~ 539 (578)
-+ .+.++++.+.|++.+.+..+...+.. ....++.++++++..++||++.||| +.+++.+
T Consensus 103 --------------~t-~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~ 166 (196)
T cd00564 103 --------------HS-LEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAE 166 (196)
T ss_pred --------------CC-HHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHH
Confidence 02 24566777889999998765433332 2346899999988889999999999 5799999
Q ss_pred HHHhcCchHHhhhhhhccCCC
Q 045794 540 VFRKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~~~~ 560 (578)
+.+ .|++++++|+++...+-
T Consensus 167 ~~~-~Ga~~i~~g~~i~~~~~ 186 (196)
T cd00564 167 VLA-AGADGVAVISAITGADD 186 (196)
T ss_pred HHH-cCCCEEEEehHhhcCCC
Confidence 985 99999999999976543
No 211
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.36 E-value=5.9e-06 Score=90.68 Aligned_cols=187 Identities=14% Similarity=0.098 Sum_probs=122.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc----cccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV----FVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~----~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
...+..+.+.+.+...+-++|=++..-|- -..-++++...... .-.+.+|.-+...++ ..+.++.|
T Consensus 166 sL~eAl~lM~~~~i~~LPVVD~~g~lvGI---IT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~-------~~~~a~~L 235 (479)
T PRK07807 166 DPREAFDLLEAARVKLAPVVDADGRLVGV---LTRTGALRATIYTPAVDAAGRLRVAAAVGINGD-------VAAKARAL 235 (479)
T ss_pred cHHHHHHHHHhcCCCEEEEEcCCCeEEEE---EEHHHHHHHhhCCchhhhhhccchHhhhccChh-------HHHHHHHH
Confidence 44567788888999999888743311010 11112222221100 001223322222111 24779999
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.+.|++.|++.++--.. ..+ .++++++.++|+..-|++ |
T Consensus 236 v~aGvd~i~~D~a~~~~--~~~-------~~~i~~ik~~~p~~~v~a----------------------------g---- 274 (479)
T PRK07807 236 LEAGVDVLVVDTAHGHQ--EKM-------LEALRAVRALDPGVPIVA----------------------------G---- 274 (479)
T ss_pred HHhCCCEEEEeccCCcc--HHH-------HHHHHHHHHHCCCCeEEe----------------------------e----
Confidence 99999999998765542 222 488999999997544443 1
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe----c--cCCCCCCCC-CCHHHHHHHHh---hCCCcEEEecCCCC
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN----C--IDCDGQGKG-FDMDLIKLISD---AVSIPVIASSGAGA 533 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t----d--i~~dG~~~G-~d~~li~~l~~---~~~ipVIasGGi~s 533 (578)
++...+-++.+.+.|++.|-+- + .++.=+.-| |++.++.++++ ..++|||+-|||.+
T Consensus 275 -------------nv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~ 341 (479)
T PRK07807 275 -------------NVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRH 341 (479)
T ss_pred -------------ccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCC
Confidence 4456788999999999988610 1 222222222 68999988877 55899999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
..|+.+++. .||++||+|++|....
T Consensus 342 ~~~~~~al~-~ga~~v~~g~~~ag~~ 366 (479)
T PRK07807 342 PRDVALALA-AGASNVMIGSWFAGTY 366 (479)
T ss_pred HHHHHHHHH-cCCCeeeccHhhccCc
Confidence 999999996 9999999999996543
No 212
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=98.35 E-value=2.2e-05 Score=76.71 Aligned_cols=182 Identities=15% Similarity=0.152 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+..+.++...+.|++.||+=..|+... .......+.++++++.+..|+.+.==+.+. .+.++.+.++|
T Consensus 13 ~~~~~~~~~~~~G~~~i~l~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~----------~~~~~~~~~~g 80 (211)
T cd00429 13 NLGEELKRLEEAGADWIHIDVMDGHFV--PNLTFGPPVVKALRKHTDLPLDVHLMVENP----------ERYIEAFAKAG 80 (211)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCC--CccccCHHHHHHHHhhCCCcEEEEeeeCCH----------HHHHHHHHHcC
Confidence 455667888888999999844443210 111122467888876554454333233332 23588888999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
+|.|.+--...... .+.++.+ +.+| -.+.+++. .
T Consensus 81 ~dgv~vh~~~~~~~-----------~~~~~~~-~~~~-~~~g~~~~--~------------------------------- 114 (211)
T cd00429 81 ADIITFHAEATDHL-----------HRTIQLI-KELG-MKAGVALN--P------------------------------- 114 (211)
T ss_pred CCEEEECccchhhH-----------HHHHHHH-HHCC-CeEEEEec--C-------------------------------
Confidence 99986622211211 1333343 4454 23333331 1
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCH---HHHHHHHhhC-----CCcEEEecCCCCHHHHHH
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDM---DLIKLISDAV-----SIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~---~li~~l~~~~-----~ipVIasGGi~s~eDi~~ 539 (578)
. +..+.++++.+. ++.+++..+...++.+..++ +.++++++.. ++|+++.|||+. +++.+
T Consensus 115 ---------~-~~~~~~~~~~~~-~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~ 182 (211)
T cd00429 115 ---------G-TPVEVLEPYLDE-VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPL 182 (211)
T ss_pred ---------C-CCHHHHHHHHhh-CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHH
Confidence 0 124555555444 78888766644334444444 4445555444 389999999974 99999
Q ss_pred HHHhcCchHHhhhhhhccCCC
Q 045794 540 VFRKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~~~~ 560 (578)
+.+ .|++++++||++...+-
T Consensus 183 ~~~-~gad~iivgsai~~~~~ 202 (211)
T cd00429 183 LAE-AGADVLVAGSALFGSDD 202 (211)
T ss_pred HHH-cCCCEEEECHHHhCCCC
Confidence 985 99999999999986554
No 213
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.35 E-value=3.2e-05 Score=75.51 Aligned_cols=86 Identities=23% Similarity=0.215 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCC---CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQG---KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~---~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+.++++.+.|++.+++-.+..+.+. .+.+++.++++.+.+++||++.||| +++++.++.+ .|+++|++++++..
T Consensus 105 ~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~-~Ga~gvav~s~i~~ 182 (201)
T PRK07695 105 LEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLA-AGVSGIAVMSGIFS 182 (201)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-cCCCEEEEEHHHhc
Confidence 34577888999999986544433333 3347899999998889999999999 8999999985 99999999999986
Q ss_pred CCCCHHHHHHH
Q 045794 558 KEVPIQSVKEH 568 (578)
Q Consensus 558 ~~~~~~~~~~~ 568 (578)
.+-+...++++
T Consensus 183 ~~~p~~~~~~~ 193 (201)
T PRK07695 183 SANPYSKAKRY 193 (201)
T ss_pred CCCHHHHHHHH
Confidence 55544444443
No 214
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=98.34 E-value=1.3e-05 Score=79.48 Aligned_cols=196 Identities=20% Similarity=0.267 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+|.+.++...+.|.|.|+|==-++. ......++++++++ +.+|+.+= |.+..+ ..
T Consensus 20 ~~~~~~~~~~~~gtdai~vGGS~~v-----t~~~~~~~v~~ik~-~~lPvilfp~~~~~i------------------~~ 75 (232)
T PRK04169 20 LPDEALEAICESGTDAIIVGGSDGV-----TEENVDELVKAIKE-YDLPVILFPGNIEGI------------------SP 75 (232)
T ss_pred CCHHHHHHHHhcCCCEEEEcCCCcc-----chHHHHHHHHHHhc-CCCCEEEeCCCcccc------------------Cc
Confidence 3445557788899998876322221 12345667888887 88999763 333332 23
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
+||.+.+=|..=.++++|+-. . -.+.+.++ ++++-+ ++ -.+|+. +++++ +
T Consensus 76 ~aDa~l~~svlNs~~~~~iig-~--~~~~~~~~-~~~~le--~i----p~gYiv--------------~~~~~------~ 125 (232)
T PRK04169 76 GADAYLFPSVLNSRNPYWIIG-A--HVEAAPII-KKGGLE--VI----PEGYIV--------------LNPGS------K 125 (232)
T ss_pred CCCEEEEEEEecCCCcchHhh-H--HHHHHHHH-hhcCcE--EC----ceEEEE--------------ECCCC------e
Confidence 578777655443444445310 0 00112222 323322 11 011110 00111 1
Q ss_pred EEEcccccCCCCCHHHHHHHHHH----cCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCC-cEEEecCCCCHHHHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVED----LGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSI-PVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~----~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~i-pVIasGGi~s~eDi~~l~ 541 (578)
+..-+-....+.+..+++..+.- +|. .++|+..+. +...++|.++++++++.++. |++++|||++.+++++++
T Consensus 126 va~~~~~~~~~~~~~~~~~~~~lA~~~~g~-~~vYle~gs-~~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l 203 (232)
T PRK04169 126 VAVVGTAAPIPLDKPDIAAYAALAAEYLGM-PIVYLEYGG-GAGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELM 203 (232)
T ss_pred eeeeeccccCCCChHHHHHHHHHHHHHcCC-CeEEEECCC-CCCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHH
Confidence 11112223334454554443322 233 577777664 56677899999999999988 999999999999999988
Q ss_pred HhcCchHHhhhhhhccCCC
Q 045794 542 RKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~~ 560 (578)
+ .|||+|++||+++.+.-
T Consensus 204 ~-~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 204 A-AGADTIVVGNIIEEDPK 221 (232)
T ss_pred H-hCCCEEEEChHHhhCHH
Confidence 5 89999999999997643
No 215
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.34 E-value=2.5e-06 Score=89.29 Aligned_cols=179 Identities=18% Similarity=0.265 Sum_probs=118.0
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhh-------ccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSEN-------VFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~-------~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
++|..+.+.|. |.++..+.. .....+.++++.+. -.-.+.++..|...+| .+|.++.|
T Consensus 52 ~mAiama~~Gg--lgvih~~~~------~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~-------~~er~~~L 116 (352)
T PF00478_consen 52 EMAIAMARLGG--LGVIHRNMS------IEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDD-------DFERAEAL 116 (352)
T ss_dssp HHHHHHHHTTS--EEEEESSSC------HHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTC-------HHHHHHHH
T ss_pred HHHHHHHHhcC--CceecCCCC------HHHHHHHHhhhccccccccccccccceEEEEecCCHH-------HHHHHHHH
Confidence 78888888764 666666542 12345566666542 1234455555555443 46889999
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.++|+|.++|.++--.. ... .+.++++.+.|++--|++ |
T Consensus 117 ~~agvD~ivID~a~g~s-~~~--------~~~ik~ik~~~~~~~via----------------------------G---- 155 (352)
T PF00478_consen 117 VEAGVDVIVIDSAHGHS-EHV--------IDMIKKIKKKFPDVPVIA----------------------------G---- 155 (352)
T ss_dssp HHTT-SEEEEE-SSTTS-HHH--------HHHHHHHHHHSTTSEEEE----------------------------E----
T ss_pred HHcCCCEEEccccCccH-HHH--------HHHHHHHHHhCCCceEEe----------------------------c----
Confidence 99999999998766553 223 278999999998544444 1
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCCC-CHHHHHHH---HhhCCCcEEEecCCCC
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKGF-DMDLIKLI---SDAVSIPVIASSGAGA 533 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G~-d~~li~~l---~~~~~ipVIasGGi~s 533 (578)
++-..+.++.|.+.|++.|.+- ..++.-+.-|. -+..+.++ ++...+|||+-|||++
T Consensus 156 -------------NV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~ 222 (352)
T PF00478_consen 156 -------------NVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRT 222 (352)
T ss_dssp -------------EE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SS
T ss_pred -------------ccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCc
Confidence 2234688999999999998853 33343333343 34444444 4445799999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
.-|+.+++. .|||.||+|+.|....
T Consensus 223 sGDi~KAla-~GAd~VMlG~llAgt~ 247 (352)
T PF00478_consen 223 SGDIVKALA-AGADAVMLGSLLAGTD 247 (352)
T ss_dssp HHHHHHHHH-TT-SEEEESTTTTTBT
T ss_pred ccceeeeee-ecccceeechhhccCc
Confidence 999999995 9999999999986543
No 216
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.29 E-value=2.6e-06 Score=83.81 Aligned_cols=65 Identities=26% Similarity=0.284 Sum_probs=52.7
Q ss_pred CCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhh
Q 045794 320 GADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAV 398 (578)
Q Consensus 320 g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~ 398 (578)
|.+ +.+++-++. .+...|.++++++++.+ ++|+++|||||+.|+ +++++++|||+|++||.+.
T Consensus 149 g~~-~vYlE~gs~----~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~-----------a~~l~~aGAD~VVVGs~~~ 212 (223)
T TIGR01768 149 GMP-IIYLEAGSG----APEPVPPELVAEVKKVLDKARLFVGGGIRSVEK-----------AREMAEAGADTIVTGNVIE 212 (223)
T ss_pred CCc-EEEEEecCC----CCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHH-----------HHHHHHcCCCEEEECcHHh
Confidence 666 444554432 23356788999999887 899999999999976 9999999999999999999
Q ss_pred cc
Q 045794 399 YA 400 (578)
Q Consensus 399 ~~ 400 (578)
++
T Consensus 213 ~d 214 (223)
T TIGR01768 213 ED 214 (223)
T ss_pred hC
Confidence 96
No 217
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.29 E-value=2.1e-06 Score=84.63 Aligned_cols=79 Identities=24% Similarity=0.382 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
...+++++++|++.+--+. .--|+..|+ |.++++.+++..++|||+.|||++++|+.++++ +|++||++||+++...
T Consensus 134 ~~~ar~l~~~G~~~vmPlg-~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Ame-lGAdgVlV~SAIt~a~ 211 (248)
T cd04728 134 PVLAKRLEDAGCAAVMPLG-SPIGSGQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIAKAK 211 (248)
T ss_pred HHHHHHHHHcCCCEeCCCC-cCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH-cCCCEEEEChHhcCCC
Confidence 6789999999999883211 334566788 999999999988999999999999999999996 9999999999999654
Q ss_pred CC
Q 045794 560 VP 561 (578)
Q Consensus 560 ~~ 561 (578)
.+
T Consensus 212 dP 213 (248)
T cd04728 212 DP 213 (248)
T ss_pred CH
Confidence 43
No 218
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.28 E-value=9.7e-06 Score=79.71 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
....+...+.+| -++++++ ..|.. .|.++++++++.+ ++|++++|||+++++++++++ .||++|++|++++..
T Consensus 137 ~~ayA~aae~~g-~~ivyLe--~SG~~--~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~-aGAD~VVVGsai~~~ 210 (219)
T cd02812 137 AAAYALAAEYLG-MPIVYLE--YSGAY--GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAE-AGADTIVVGNIVEED 210 (219)
T ss_pred HHHHHHHHHHcC-CeEEEeC--CCCCc--CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHH-cCCCEEEECchhhCC
Confidence 456777888888 6788887 44444 7899999999998 999999999999999999995 899999999999986
No 219
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=98.28 E-value=2.9e-05 Score=88.32 Aligned_cols=189 Identities=20% Similarity=0.187 Sum_probs=132.4
Q ss_pred EecCCHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 304 RNLGKPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 304 ~~~~~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+..-||.++|+.|.+.||.-|.|+ |=.-+. | +++.++++++.+.+||-- ++ ||.-. -++.+
T Consensus 67 ~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~-G------s~~~l~~vr~~v~~PvLr----KD------FIid~-~QI~e 128 (695)
T PRK13802 67 SDIPDPAALAREYEQGGASAISVLTEGRRFL-G------SLDDFDKVRAAVHIPVLR----KD------FIVTD-YQIWE 128 (695)
T ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCcCcCC-C------CHHHHHHHHHhCCCCEEe----cc------ccCCH-HHHHH
Confidence 334599999999999999999885 444432 1 256777788888999952 22 22222 33666
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
...+|||-|.+=..++.+ ..+ +.+-+.+..+|-+.+ |-+
T Consensus 129 a~~~GADavLLI~~~L~~-~~l---------~~l~~~a~~lGme~L-vEv------------------------------ 167 (695)
T PRK13802 129 ARAHGADLVLLIVAALDD-AQL---------KHLLDLAHELGMTVL-VET------------------------------ 167 (695)
T ss_pred HHHcCCCEeehhHhhcCH-HHH---------HHHHHHHHHcCCeEE-EEe------------------------------
Confidence 777899999887777763 112 334455667775532 211
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l 540 (578)
+ -.+-++++.+.|++-|-+++++-.- -..|++...++.... ++.+|+.+||.+++|+..+
T Consensus 168 -------h---------~~~el~~a~~~ga~iiGINnRdL~t--f~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l 229 (695)
T PRK13802 168 -------H---------TREEIERAIAAGAKVIGINARNLKD--LKVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDY 229 (695)
T ss_pred -------C---------CHHHHHHHHhCCCCEEEEeCCCCcc--ceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHH
Confidence 0 1345566778899877788877652 246788888877665 4678999999999999999
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.+ .|++|++||+++...+.+-..+++.+.
T Consensus 230 ~~-~G~davLIGeslm~~~dp~~~~~~l~~ 258 (695)
T PRK13802 230 AR-AGADAVLVGEGVATADDHELAVERLVK 258 (695)
T ss_pred HH-CCCCEEEECHHhhCCCCHHHHHHHHHh
Confidence 85 999999999999988876666665543
No 220
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.27 E-value=2e-05 Score=85.98 Aligned_cols=190 Identities=19% Similarity=0.266 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+-+++++...+.|++.|++ +..... ..-.+.|+++++....+..+ .-+|-.. .|+ ..++.+.++
T Consensus 16 ~~~~~~~~~~~~~Gv~~ie~-g~p~~~------~~~~~~i~~l~~~~~~~~ii-~D~kl~d------~g~-~~v~~a~~a 80 (430)
T PRK07028 16 DRAVEIAKEAVAGGADWIEA-GTPLIK------SEGMNAIRTLRKNFPDHTIV-ADMKTMD------TGA-IEVEMAAKA 80 (430)
T ss_pred HHHHHHHHHHHhcCCcEEEe-CCHHHH------HhhHHHHHHHHHHCCCCEEE-EEeeecc------chH-HHHHHHHHc
Confidence 35567888888899999985 221110 11257788888765444432 1222211 011 148899999
Q ss_pred Ccceeec-chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 387 GADKISI-GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 387 Ga~~vv~-gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
||+.|.+ +...... + .+.++. ++++|.. +++.+ ..
T Consensus 81 GAdgV~v~g~~~~~~----~-------~~~i~~-a~~~G~~-~~~g~--~s----------------------------- 116 (430)
T PRK07028 81 GADIVCILGLADDST----I-------EDAVRA-ARKYGVR-LMADL--IN----------------------------- 116 (430)
T ss_pred CCCEEEEecCCChHH----H-------HHHHHH-HHHcCCE-EEEEe--cC-----------------------------
Confidence 9999886 5321110 0 133344 3457743 33211 00
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
.-+..+.++++.+.|++.|.+.... ++...++ .++.++++++.+++||++.||| +.+.+.++++ .
T Consensus 117 -----------~~t~~e~~~~a~~~GaD~I~~~pg~-~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI-~~~n~~~~l~-a 182 (430)
T PRK07028 117 -----------VPDPVKRAVELEELGVDYINVHVGI-DQQMLGKDPLELLKEVSEEVSIPIAVAGGL-DAETAAKAVA-A 182 (430)
T ss_pred -----------CCCHHHHHHHHHhcCCCEEEEEecc-chhhcCCChHHHHHHHHhhCCCcEEEECCC-CHHHHHHHHH-c
Confidence 1123566788889999999766322 2222233 4688999988888999999999 6789999985 8
Q ss_pred CchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 545 NASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
|++++++||++...+ ++.+..+.|+
T Consensus 183 GAdgv~vGsaI~~~~-d~~~~~~~l~ 207 (430)
T PRK07028 183 GADIVIVGGNIIKSA-DVTEAARKIR 207 (430)
T ss_pred CCCEEEEChHHcCCC-CHHHHHHHHH
Confidence 999999999998754 3444444443
No 221
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=98.26 E-value=2.1e-05 Score=81.14 Aligned_cols=178 Identities=15% Similarity=0.224 Sum_probs=123.1
Q ss_pred HHHHHHHHHcCC-CeEEE-EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 310 VELARQYYKEGA-DEISF-LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 310 ~~~a~~~~~~g~-~~i~~-~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
.++|..+.+.|. .-+|= .+++. ..+.+++..+.....+.+.-|++.. ++|.++.|+++|
T Consensus 59 ~~mA~~la~~g~~~~iHk~~~~e~----------~~~~v~~~~~~~~~~~~vsvG~~~~---------d~er~~~L~~a~ 119 (343)
T TIGR01305 59 FEMAAALSQHSIFTAIHKHYSVDE----------WKAFATNSSPDCLQNVAVSSGSSDN---------DLEKMTSILEAV 119 (343)
T ss_pred HHHHHHHHHCCCeEEEeeCCCHHH----------HHHHHHhhcccccceEEEEeccCHH---------HHHHHHHHHhcC
Confidence 378999988753 44442 23322 1344555444444455566677764 268899999985
Q ss_pred --cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 388 --ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 388 --a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|.|+|.++-=.. +.+ .+.++.+.+.|+.--|+. |
T Consensus 120 ~~~d~iviD~AhGhs--~~~-------i~~ik~ir~~~p~~~via----------------------------G------ 156 (343)
T TIGR01305 120 PQLKFICLDVANGYS--EHF-------VEFVKLVREAFPEHTIMA----------------------------G------ 156 (343)
T ss_pred CCCCEEEEECCCCcH--HHH-------HHHHHHHHhhCCCCeEEE----------------------------e------
Confidence 9999998765432 233 378999999996432222 1
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCC-CCHHHHHHHHhhC---CCcEEEecCCCCHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKG-FDMDLIKLISDAV---SIPVIASSGAGAVE 535 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G-~d~~li~~l~~~~---~ipVIasGGi~s~e 535 (578)
++-..+-++.+.+.|++.|.+- ..+|.-+.-| +-+..+.+++++. .+|||+=|||+..-
T Consensus 157 -----------NV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~g 225 (343)
T TIGR01305 157 -----------NVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPG 225 (343)
T ss_pred -----------cccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchh
Confidence 2344678889999999998644 4555545556 5677777776544 68999999999999
Q ss_pred HHHHHHHhcCchHHhhhhhhccCCCC
Q 045794 536 HFSDVFRKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 536 Di~~l~~~~G~~gv~vgsa~~~~~~~ 561 (578)
|+.+++. .||++||+|+.+..++-.
T Consensus 226 DI~KALA-~GAd~VMlG~llAG~~Es 250 (343)
T TIGR01305 226 DVAKAFG-AGADFVMLGGMFAGHTES 250 (343)
T ss_pred HHHHHHH-cCCCEEEECHhhhCcCcC
Confidence 9999996 999999999998765543
No 222
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=98.25 E-value=9.8e-05 Score=74.29 Aligned_cols=206 Identities=21% Similarity=0.248 Sum_probs=133.8
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCC----CCCCCchhHHHHHHHhhhccccEEEeCCccccc-cCCCCccChHHHHHHH
Q 045794 309 PVELARQYYKEGADEISFLNITGFRD----FPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFT-DANGRHYSSLEVASEY 383 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~----~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~-d~~~~~~~~~~~~~~~ 383 (578)
.++=|+.|.+.|+|.|+|=+.-..-- ++..-..+-.+++++.+++.+|+ ||.=+. | ..+.+.-.
T Consensus 30 A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~----GvnvL~nd-------~~aal~iA 98 (257)
T TIGR00259 30 AWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPL----GINVLRND-------AVAALAIA 98 (257)
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCe----eeeeecCC-------CHHHHHHH
Confidence 33447889999999999976643210 00001223344566777777885 554333 2 12334445
Q ss_pred HHcCcceeec----chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCC
Q 045794 384 FRSGADKISI----GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNG 459 (578)
Q Consensus 384 l~~Ga~~vv~----gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (578)
...|++.|=+ |+..-. ..+.+ .+...+-+..++.| +.|.+--|++..
T Consensus 99 ~a~ga~FIRv~~~~g~~~~d--~G~~~----~~a~e~~r~r~~l~-~~v~i~adV~~k---------------------- 149 (257)
T TIGR00259 99 MAVGAKFIRVNVLTGVYASD--QGIIE----GNAGELIRYKKLLG-SEVKILADIVVK---------------------- 149 (257)
T ss_pred HHhCCCEEEEccEeeeEecc--ccccc----ccHHHHHHHHHHcC-CCcEEEeceeec----------------------
Confidence 5679885543 544222 22221 12233344556666 456665565432
Q ss_pred CCcceEEEEEcccccCCCCCHHHHHHHHHHcC-CcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHH
Q 045794 460 EEYAWYQCTVNGGREGRPIGAYELAKAVEDLG-AGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHF 537 (578)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G-~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi 537 (578)
++. -..+.++.+.++.....+ +|.+++|.. +|.+-+|++.++++++.. +.||+++||+ +++.+
T Consensus 150 ----------h~~-~l~~~~~~e~a~~~~~~~~aDavivtG~---~TG~~~d~~~l~~vr~~~~~~PvllggGv-t~eNv 214 (257)
T TIGR00259 150 ----------HAV-HLGNRDLESIALDTVERGLADAVILSGK---TTGTEVDLELLKLAKETVKDTPVLAGSGV-NLENV 214 (257)
T ss_pred ----------ccC-cCCCCCHHHHHHHHHHhcCCCEEEECcC---CCCCCCCHHHHHHHHhccCCCeEEEECCC-CHHHH
Confidence 111 123678899999988888 999998874 466668999999998755 6899999999 78999
Q ss_pred HHHHHhcCchHHhhhhhhcc-C----CCCHHHHHHHHHh
Q 045794 538 SDVFRKTNASAALAAGIFHR-K----EVPIQSVKEHLYK 571 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~-~----~~~~~~~~~~l~~ 571 (578)
.++++ . ++|++|||.|-. | +++.+.++++++.
T Consensus 215 ~e~l~-~-adGviVgS~~K~~G~~~n~~D~~rV~~Fm~~ 251 (257)
T TIGR00259 215 EELLS-I-ADGVIVATTIKKDGVFNNFVDQARVSQFVEK 251 (257)
T ss_pred HHHHh-h-CCEEEECCCcccCCccCCCcCHHHHHHHHHH
Confidence 99986 4 999999999954 3 5888888888764
No 223
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.25 E-value=1.4e-05 Score=82.49 Aligned_cols=176 Identities=14% Similarity=0.233 Sum_probs=118.5
Q ss_pred HHHHHHHHHcCC-CeEEE-EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc-
Q 045794 310 VELARQYYKEGA-DEISF-LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS- 386 (578)
Q Consensus 310 ~~~a~~~~~~g~-~~i~~-~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~- 386 (578)
.++|..+.+.|. .-||= .+++. ..+.+++........+.+.-|++.. | +|.+++|+++
T Consensus 60 ~~mA~~la~~g~~~~iHk~~~~e~----------~~~fv~~~~~~~~~~~~vavG~~~~-d--------~er~~~L~~~~ 120 (346)
T PRK05096 60 FEMAKALASFDILTAVHKHYSVEE----------WAAFVNNSSADVLKHVMVSTGTSDA-D--------FEKTKQILALS 120 (346)
T ss_pred HHHHHHHHHCCCeEEEecCCCHHH----------HHHHHHhccccccceEEEEecCCHH-H--------HHHHHHHHhcC
Confidence 388999988754 43442 22221 1344555554444455666677763 2 6889999994
Q ss_pred -CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 387 -GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 387 -Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
|+|.|+|.++-=.+ +.+ .++++++.+.|+.--|++ |
T Consensus 121 ~g~D~iviD~AhGhs--~~~-------i~~ik~ik~~~P~~~vIa----------------------------G------ 157 (346)
T PRK05096 121 PALNFICIDVANGYS--EHF-------VQFVAKAREAWPDKTICA----------------------------G------ 157 (346)
T ss_pred CCCCEEEEECCCCcH--HHH-------HHHHHHHHHhCCCCcEEE----------------------------e------
Confidence 99999998765442 233 378999999997533333 1
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEE------eccCCCCCCCCC-CHHHHHHH---HhhCCCcEEEecCCCCHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILL------NCIDCDGQGKGF-DMDLIKLI---SDAVSIPVIASSGAGAVE 535 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~------tdi~~dG~~~G~-d~~li~~l---~~~~~ipVIasGGi~s~e 535 (578)
++-..+.++.|.+.|++.+-+ ..+++.-+.-|. -+..+.+. +...++|||+-|||+..-
T Consensus 158 -----------NV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sG 226 (346)
T PRK05096 158 -----------NVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPG 226 (346)
T ss_pred -----------cccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCccccc
Confidence 344467899999999998852 123343333443 44444444 345589999999999999
Q ss_pred HHHHHHHhcCchHHhhhhhhccCC
Q 045794 536 HFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 536 Di~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
|+.+++. .|++.||+|+.|....
T Consensus 227 DI~KAla-aGAd~VMlGsllAGt~ 249 (346)
T PRK05096 227 DVAKAFG-GGADFVMLGGMLAGHE 249 (346)
T ss_pred HHHHHHH-cCCCEEEeChhhcCcc
Confidence 9999996 9999999999986543
No 224
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=98.25 E-value=0.00013 Score=73.41 Aligned_cols=206 Identities=22% Similarity=0.270 Sum_probs=131.9
Q ss_pred HHHHHHHHHHcCCCeEEEEecccC--CCC--CCCCchhHHHHHHHhhhccccEEEeCCccccc-cCCCCccChHHHHHHH
Q 045794 309 PVELARQYYKEGADEISFLNITGF--RDF--PLGDLPMLQVLRLTSENVFVPLTVGGGIRDFT-DANGRHYSSLEVASEY 383 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~--~~~--~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~-d~~~~~~~~~~~~~~~ 383 (578)
.++=|+.|.+.|+|.|+|-+.... ... +..-..+-.+++++.+++++|+ ||.=+. | ..+.+.-.
T Consensus 31 A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~----GVnvL~nd-------~~aalaiA 99 (254)
T PF03437_consen 31 AVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPV----GVNVLRND-------PKAALAIA 99 (254)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCE----EeeeecCC-------CHHHHHHH
Confidence 344578899999999999886432 110 0001123344556667777886 555443 2 12334445
Q ss_pred HHcCcceeec----chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCC
Q 045794 384 FRSGADKISI----GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNG 459 (578)
Q Consensus 384 l~~Ga~~vv~----gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (578)
...|++.|=+ |+..-. ..+.. .+...+-+..++.|.+ |-+--|++...
T Consensus 100 ~A~ga~FIRv~~~~g~~~~d--~G~~~----~~a~e~~r~R~~l~a~-v~ilaDV~~kh--------------------- 151 (254)
T PF03437_consen 100 AATGADFIRVNVFVGAYVTD--EGIIE----GCAGELLRYRKRLGAD-VKILADVHVKH--------------------- 151 (254)
T ss_pred HHhCCCEEEecCEEceeccc--Ccccc----ccHHHHHHHHHHcCCC-eEEEeeechhh---------------------
Confidence 6679986654 332221 12211 0112233445667776 66666654321
Q ss_pred CCcceEEEEEcccccCCCCCHHHHHHHH-HHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q 045794 460 EEYAWYQCTVNGGREGRPIGAYELAKAV-EDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFS 538 (578)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~e~~~~~-~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~ 538 (578)
+ .-..+.++.+.++.. +..++|.+++|.- .|...++.+.++++++.+++||++++|+ +.+-+.
T Consensus 152 -----------~-~~l~~~~~~~~~~~a~~~~~aDaviVtG~---~TG~~~~~~~l~~vr~~~~~PVlvGSGv-t~~Ni~ 215 (254)
T PF03437_consen 152 -----------S-SPLATRDLEEAAKDAVERGGADAVIVTGK---ATGEPPDPEKLKRVREAVPVPVLVGSGV-TPENIA 215 (254)
T ss_pred -----------c-ccCCCCCHHHHHHHHHHhcCCCEEEECCc---ccCCCCCHHHHHHHHhcCCCCEEEecCC-CHHHHH
Confidence 0 011234567777666 6778999999874 3456679999999999999999999999 778899
Q ss_pred HHHHhcCchHHhhhhhhcc-----CCCCHHHHHHHHHh
Q 045794 539 DVFRKTNASAALAAGIFHR-----KEVPIQSVKEHLYK 571 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~-----~~~~~~~~~~~l~~ 571 (578)
++++ -|||++|||.|-. ++++.+.++++++.
T Consensus 216 ~~l~--~ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm~~ 251 (254)
T PF03437_consen 216 EYLS--YADGAIVGSYFKKDGKWENPVDPERVRRFMEA 251 (254)
T ss_pred HHHH--hCCEEEEeeeeeeCCEeCCcCCHHHHHHHHHH
Confidence 9885 4999999999863 46889999988764
No 225
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=98.23 E-value=4.4e-06 Score=82.91 Aligned_cols=78 Identities=27% Similarity=0.358 Sum_probs=60.0
Q ss_pred CHHHHHHHHHH----cCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccc-cEEEeCCccccccCCCCccChHHHHHH
Q 045794 308 KPVELARQYYK----EGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFV-PLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 308 ~p~~~a~~~~~----~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~-pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
++.++|..+.- .|.+ +++++-... .+...|.++|+++++.++. |+++|||||+.|+ +++
T Consensus 138 ~~~~~~~~~~lA~~~~g~~-~vYle~gs~----~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~-----------a~~ 201 (232)
T PRK04169 138 DKPDIAAYAALAAEYLGMP-IVYLEYGGG----AGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQ-----------ARE 201 (232)
T ss_pred ChHHHHHHHHHHHHHcCCC-eEEEECCCC----CCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHH-----------HHH
Confidence 55566555543 2666 445555432 2346678999999998888 9999999999866 999
Q ss_pred HHHcCcceeecchhhhccc
Q 045794 383 YFRSGADKISIGSDAVYAA 401 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~ 401 (578)
++.+|||+|++||+..+++
T Consensus 202 ~l~~GAD~VVVGSai~~d~ 220 (232)
T PRK04169 202 LMAAGADTIVVGNIIEEDP 220 (232)
T ss_pred HHHhCCCEEEEChHHhhCH
Confidence 9999999999999999864
No 226
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.22 E-value=3.1e-05 Score=80.13 Aligned_cols=91 Identities=15% Similarity=0.102 Sum_probs=70.8
Q ss_pred HHHHHHHHHHc--CCcEEEEecc-------C--CC----------CCCCCC-----CHHHHHHHHhhC--CCcEEEecCC
Q 045794 480 AYELAKAVEDL--GAGEILLNCI-------D--CD----------GQGKGF-----DMDLIKLISDAV--SIPVIASSGA 531 (578)
Q Consensus 480 ~~e~~~~~~~~--G~~~ii~tdi-------~--~d----------G~~~G~-----d~~li~~l~~~~--~ipVIasGGi 531 (578)
+.++++.+.+. |++.|++++. + +. |-+.|+ .+..++++++.+ ++|||++|||
T Consensus 173 ~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI 252 (294)
T cd04741 173 FDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGV 252 (294)
T ss_pred HHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCC
Confidence 56788888888 8999996422 2 11 111222 145667887888 4999999999
Q ss_pred CCHHHHHHHHHhcCchHHhhhhhhc-cCCCCHHHHHHHHHh
Q 045794 532 GAVEHFSDVFRKTNASAALAAGIFH-RKEVPIQSVKEHLYK 571 (578)
Q Consensus 532 ~s~eDi~~l~~~~G~~gv~vgsa~~-~~~~~~~~~~~~l~~ 571 (578)
.+.+|+.+.+. +||++|+++|++. .+++.+.++++.|.+
T Consensus 253 ~s~~da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~ 292 (294)
T cd04741 253 LDGRGAFRMRL-AGASAVQVGTALGKEGPKVFARIEKELED 292 (294)
T ss_pred CCHHHHHHHHH-cCCCceeEchhhhhcCchHHHHHHHHHHh
Confidence 99999999996 9999999999988 499999999988865
No 227
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.21 E-value=4e-06 Score=82.83 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
...+++++++|++.|--.. .--|+.+|+ |.++++.+.+..++|||+.|||++++|+.++++ +|++||++||+++...
T Consensus 134 ~~~ak~l~~~G~~~vmPlg-~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Ame-lGAdgVlV~SAItka~ 211 (250)
T PRK00208 134 PVLAKRLEEAGCAAVMPLG-APIGSGLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIAVAG 211 (250)
T ss_pred HHHHHHHHHcCCCEeCCCC-cCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEChHhhCCC
Confidence 6789999999999883211 334566787 899999999888999999999999999999996 9999999999998644
Q ss_pred C
Q 045794 560 V 560 (578)
Q Consensus 560 ~ 560 (578)
.
T Consensus 212 d 212 (250)
T PRK00208 212 D 212 (250)
T ss_pred C
Confidence 3
No 228
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=98.20 E-value=2.1e-05 Score=82.81 Aligned_cols=94 Identities=13% Similarity=0.067 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC----CCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhh
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC----DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~----dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa 554 (578)
+..++++.+++.|++.|-++.-+. .....|+++++.+++++.+++||++.|++.+++++.++++..++|.|++|++
T Consensus 228 e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~ 307 (337)
T PRK13523 228 DYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIGRE 307 (337)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHH
Confidence 356888999999999998876431 1234677899999999999999999999999999999998666999999999
Q ss_pred hccCCCCHHHHHHHHHhC
Q 045794 555 FHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 555 ~~~~~~~~~~~~~~l~~~ 572 (578)
+...+.-+..+++.+...
T Consensus 308 ~iadP~~~~k~~~~~~~~ 325 (337)
T PRK13523 308 LLRNPYFPRIAAKELGFE 325 (337)
T ss_pred HHhCccHHHHHHHHcCCC
Confidence 999998888887766543
No 229
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=98.20 E-value=9.7e-05 Score=72.34 Aligned_cols=176 Identities=21% Similarity=0.288 Sum_probs=127.0
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
.++++...+.|++.+.+-+=+..... ......-++.++++.++|+.+- +. ++-.++.|||
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~---~~~~a~~~~~lc~~~~v~liIN----d~-------------~dlA~~~~Ad 83 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEE---YLALAEKLRALCQKYGVPLIIN----DR-------------VDLALAVGAD 83 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHH---HHHHHHHHHHHHHHhCCeEEec----Cc-------------HHHHHhCCCC
Confidence 78888888999999988766653111 1233456777888889999863 32 5667889999
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTV 469 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (578)
.|=||..-.. +.++.+.+++..+ +.+.+.
T Consensus 84 GVHlGq~D~~----------------~~~ar~~~~~~~i-IG~S~h---------------------------------- 112 (211)
T COG0352 84 GVHLGQDDMP----------------LAEARELLGPGLI-IGLSTH---------------------------------- 112 (211)
T ss_pred EEEcCCcccc----------------hHHHHHhcCCCCE-EEeecC----------------------------------
Confidence 9999975332 3566677776533 323211
Q ss_pred cccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC---CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 045794 470 NGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG---KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNA 546 (578)
Q Consensus 470 ~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~---~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~ 546 (578)
-.+.+.++++.|++.|.+-.+-.+-+. ....++.++.+.+...+|+++-||| +++.+.++++ +|+
T Consensus 113 ----------~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi-~~~nv~~v~~-~Ga 180 (211)
T COG0352 113 ----------DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGI-NLENVPEVLE-AGA 180 (211)
T ss_pred ----------CHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-hCC
Confidence 157788888999999996655443333 3447899999988888999999999 7899999996 999
Q ss_pred hHHhhhhhhccCCCCHHHHHHH
Q 045794 547 SAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 547 ~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
+||.+-|++....-....++++
T Consensus 181 ~gVAvvsai~~a~d~~~a~~~~ 202 (211)
T COG0352 181 DGVAVVSAITSAADPAAAAKAL 202 (211)
T ss_pred CeEEehhHhhcCCCHHHHHHHH
Confidence 9999999998766544444433
No 230
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.19 E-value=2.2e-05 Score=79.58 Aligned_cols=187 Identities=14% Similarity=0.210 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEec---ccCCCCC-------------CCCchhHHHHHHHhhh-ccccEEEeCCccccccCC
Q 045794 308 KPVELARQYYKEGADEISFLNI---TGFRDFP-------------LGDLPMLQVLRLTSEN-VFVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl---~~~~~~~-------------~~~~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~ 370 (578)
.-+++++.+.+.|+|.|=+ -+ |-.-||+ ..-..-+++++++++. +.+|+..=+-. +.
T Consensus 25 ~~~~~~~~l~~~Gad~iEl-GiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~-Np---- 98 (256)
T TIGR00262 25 TSLEIIKTLIEAGADALEL-GVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYY-NL---- 98 (256)
T ss_pred HHHHHHHHHHHcCCCEEEE-CCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEec-cH----
Confidence 3467788888889985543 11 1111111 1112346678888866 67886422211 11
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCcccccee
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAV 450 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~ 450 (578)
.+.|...+-++++.++|++.+++--...+.. +.+.+..+++|-+.+ ..+-
T Consensus 99 i~~~G~e~f~~~~~~aGvdgviipDlp~ee~------------~~~~~~~~~~gl~~i-~lv~----------------- 148 (256)
T TIGR00262 99 IFRKGVEEFYAKCKEVGVDGVLVADLPLEES------------GDLVEAAKKHGVKPI-FLVA----------------- 148 (256)
T ss_pred HhhhhHHHHHHHHHHcCCCEEEECCCChHHH------------HHHHHHHHHCCCcEE-EEEC-----------------
Confidence 1233334558899999999999865544422 223344566775433 3231
Q ss_pred eeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC-CCCCC---CCCCHHHHHHHHhhCCCcEE
Q 045794 451 RVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID-CDGQG---KGFDMDLIKLISDAVSIPVI 526 (578)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~-~dG~~---~G~d~~li~~l~~~~~ipVI 526 (578)
..+..+.++.+.+..-+.+.+..+. ..|.. .....+.++++++.++.||+
T Consensus 149 --------------------------P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~ 202 (256)
T TIGR00262 149 --------------------------PNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVL 202 (256)
T ss_pred --------------------------CCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEE
Confidence 1123455555555544456654542 22221 12246888999988899999
Q ss_pred EecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 527 asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
++|||++.++++++.+ .|+|||++||++.+
T Consensus 203 vgfGI~~~e~~~~~~~-~GADgvVvGSaiv~ 232 (256)
T TIGR00262 203 VGFGISKPEQVKQAID-AGADGVIVGSAIVK 232 (256)
T ss_pred EeCCCCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 9999999999999985 89999999999964
No 231
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.19 E-value=6e-05 Score=79.29 Aligned_cols=178 Identities=16% Similarity=0.158 Sum_probs=121.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+..+.++...+.|++.|++=+=+.... ........++++++..++++.+- +. +.-.+..|
T Consensus 158 ~ll~~l~~al~~Gv~~VQLR~K~~~~~---~~~~~a~~L~~l~~~~~~~lIIN----D~-------------vdlAl~~~ 217 (347)
T PRK02615 158 NLLEVVEAALKGGVTLVQYRDKTADDR---QRLEEAKKLKELCHRYGALFIVN----DR-------------VDIALAVD 217 (347)
T ss_pred hHHHHHHHHHHcCCCEEEECCCCCCHH---HHHHHHHHHHHHHHHhCCeEEEe----Ch-------------HHHHHHcC
Confidence 567788888888999888753332100 11223345667777778888753 32 55677889
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
+|.|=+|-..+. +.++.+..|++++ +++.+-
T Consensus 218 aDGVHLgq~dl~----------------~~~aR~llg~~~i-IG~S~H-------------------------------- 248 (347)
T PRK02615 218 ADGVHLGQEDLP----------------LAVARQLLGPEKI-IGRSTT-------------------------------- 248 (347)
T ss_pred CCEEEeChhhcC----------------HHHHHHhcCCCCE-EEEecC--------------------------------
Confidence 999999854332 2444555676654 344321
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC---CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG---KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~---~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
+ .+-++++.+.|++.|.+-.+-...+. ....++.++.+++...+||+|-||| +.+++.++.. .
T Consensus 249 -----------s-~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI-~~~ni~~l~~-~ 314 (347)
T PRK02615 249 -----------N-PEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGI-DKSNIPEVLQ-A 314 (347)
T ss_pred -----------C-HHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHH-c
Confidence 2 34456677889999987655444333 3457899999998889999999999 5899999985 9
Q ss_pred CchHHhhhhhhccCCCCHHHHHHH
Q 045794 545 NASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
|++||.+++++...+-+...++++
T Consensus 315 Ga~gVAvisaI~~a~dp~~~~~~l 338 (347)
T PRK02615 315 GAKRVAVVRAIMGAEDPKQATQEL 338 (347)
T ss_pred CCcEEEEeHHHhCCCCHHHHHHHH
Confidence 999999999998665544444433
No 232
>PHA03366 FGAM-synthase; Provisional
Probab=98.19 E-value=2e-05 Score=95.67 Aligned_cols=93 Identities=19% Similarity=0.227 Sum_probs=69.7
Q ss_pred CCCCcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCc-----cCCCCCCEEEECCCCCchHHHH----H----HHhhcH
Q 045794 44 TSSDSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTP-----EDILNANRLIFPGVGAFAAAMD----V----LNKTGM 109 (578)
Q Consensus 44 ~~~~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~-----~dl~~~DGlILpGGg~~~~~~~----~----l~~~~l 109 (578)
+..+|+|+|+-++ +..-.+...+|..+|+++..+... ..|++++||++|||-++.+.+. | +....+
T Consensus 1025 ~~~~prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~ 1104 (1304)
T PHA03366 1025 PDKRHRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTFLDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAV 1104 (1304)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCccccceEEEEcCCCCCcccccHHHHHHHHhhhchHH
Confidence 5678999999875 566778899999999987766422 2289999999999955543221 2 122256
Q ss_pred HHHHHHHH-hCCCCEEEEec-hHHHHhhh
Q 045794 110 AEALCAYI-EKDRPFLGICL-GLQLLFQS 136 (578)
Q Consensus 110 ~~~i~~~~-~~g~PIlGICl-G~QlLa~a 136 (578)
.+.++++. +.+.++||||- |+|+|+..
T Consensus 1105 ~~~~~~f~~r~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1105 RDALLRFLNRPDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred HHHHHHHHhCCCCeEEEeCcHHHHHHHHc
Confidence 67788888 45899999998 99999983
No 233
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.19 E-value=4.2e-06 Score=87.93 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC-------------CCCCCCCC-----HHHHHHHHhhC--CCcEEEecCCCCHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC-------------DGQGKGFD-----MDLIKLISDAV--SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~-------------dG~~~G~d-----~~li~~l~~~~--~ipVIasGGi~s~eDi~ 538 (578)
++.++++.+++.|++.|.+++... .|.++|+. ++.++++++.+ ++|||++|||.+.+|+.
T Consensus 217 ~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~ 296 (327)
T cd04738 217 ELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAY 296 (327)
T ss_pred HHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHH
Confidence 467899999999999999887532 23345542 68889999888 79999999999999999
Q ss_pred HHHHhcCchHHhhhhhhcc-CCCCHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHR-KEVPIQSVKEH 568 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~-~~~~~~~~~~~ 568 (578)
+++. .||++|++||++.. |+..+.++++.
T Consensus 297 e~l~-aGAd~V~vg~~~~~~gP~~~~~i~~~ 326 (327)
T cd04738 297 EKIR-AGASLVQLYTGLVYEGPGLVKRIKRE 326 (327)
T ss_pred HHHH-cCCCHHhccHHHHhhCcHHHHHHHhc
Confidence 9996 99999999999854 68877776653
No 234
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.19 E-value=1.4e-05 Score=96.53 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=69.8
Q ss_pred cCCCCCcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCc-----cCCCCCCEEEECCCCCchHHHH----HH----Hhh
Q 045794 42 RATSSDSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTP-----EDILNANRLIFPGVGAFAAAMD----VL----NKT 107 (578)
Q Consensus 42 ~~~~~~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~-----~dl~~~DGlILpGGg~~~~~~~----~l----~~~ 107 (578)
..++.+|+|+|+-++ +..-.+...+|..+|+++..+... ..+++++||+++||-++.+.+. |. ...
T Consensus 924 ~~~~~~p~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~ 1003 (1202)
T TIGR01739 924 TCPDPRHQVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFLDTFSGLIIGGASGTLDSEVGARALAAALLRNQ 1003 (1202)
T ss_pred cCCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCchhheEEEEEcCcCCCCccchHHHHHHHHhhcch
Confidence 344568999999875 567778899999999887766422 2377899999999855443221 11 123
Q ss_pred cHHHHHHHHH-hCCCCEEEEec-hHHHHhhh
Q 045794 108 GMAEALCAYI-EKDRPFLGICL-GLQLLFQS 136 (578)
Q Consensus 108 ~l~~~i~~~~-~~g~PIlGICl-G~QlLa~a 136 (578)
.+.+.++++. +.+.++||||- |+|+|+..
T Consensus 1004 ~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 1004 AFLRDLLTFLNRPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred HHHHHHHHHHhCCCceEEEeCcHHHHHHHHc
Confidence 5677888888 45899999997 99999984
No 235
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.19 E-value=6.6e-05 Score=73.24 Aligned_cols=186 Identities=18% Similarity=0.181 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+-.++|+...+.|+|.|.+===++. ......++++.+++.+++||.+= |....+ ..
T Consensus 12 ~~~~ia~~v~~~gtDaI~VGGS~gv-----t~~~~~~~v~~ik~~~~lPvilfp~~~~~i------------------~~ 68 (205)
T TIGR01769 12 EIEKIAKNAKDAGTDAIMVGGSLGI-----VESNLDQTVKKIKKITNLPVILFPGNVNGL------------------SR 68 (205)
T ss_pred HHHHHHHHHHhcCCCEEEEcCcCCC-----CHHHHHHHHHHHHhhcCCCEEEECCCcccc------------------Cc
Confidence 4556778888999998876211111 11344567888888789999864 333322 24
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
+||.+.+=|..=.+++.|+- ..=.+++ ++||.+ ++. .+|+. . ++++
T Consensus 69 ~aD~~~~~sllns~~~~~i~-------g~~~~~~~~~~~~~~e-~ip-----~gYiv------------~--~~~~---- 117 (205)
T TIGR01769 69 YADAVFFMSLLNSADTYFIV-------GAQILGAITILKLNLE-VIP-----MAYLI------------V--GPGG---- 117 (205)
T ss_pred CCCEEEEEEeecCCCcchhh-------hHHHHHHHHHHHcCCc-ccc-----eEEEE------------E--CCCC----
Confidence 68877775544334455531 1112233 677743 221 01110 0 0000
Q ss_pred eEEEEEccccc-CCCCC---HHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q 045794 464 WYQCTVNGGRE-GRPIG---AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 464 ~~~~~~~g~~~-~~~~~---~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~ 539 (578)
.+.--+..+ -.+.+ ...++..++.+|++.+-+-+ .+|.....+.++++++++.+++|++++|||++.+++++
T Consensus 118 --~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~--~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~ 193 (205)
T TIGR01769 118 --AVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEA--GSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYE 193 (205)
T ss_pred --ceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEc--CCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHH
Confidence 111011111 11122 44677778888998766633 35676667899999999999999999999999999999
Q ss_pred HHHhcCchHHhhh
Q 045794 540 VFRKTNASAALAA 552 (578)
Q Consensus 540 l~~~~G~~gv~vg 552 (578)
+++ .|+|++++|
T Consensus 194 l~~-~GAD~VVVG 205 (205)
T TIGR01769 194 IVL-AGADAIVTG 205 (205)
T ss_pred HHH-cCCCEEEeC
Confidence 985 799999876
No 236
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.17 E-value=1.1e-05 Score=85.57 Aligned_cols=75 Identities=24% Similarity=0.254 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+-.++++.+.+.|++.| .++.......+.....+...+.++.++.++||.+ |+|.+.++ +++++++
T Consensus 141 ~~~~e~a~~l~eaGvd~I-~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~-----------A~~l~~a 207 (368)
T PRK08649 141 QRAQELAPTVVEAGVDLF-VIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV-GGCVTYTT-----------ALHLMRT 207 (368)
T ss_pred cCHHHHHHHHHHCCCCEE-EEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE-eCCCCHHH-----------HHHHHHc
Confidence 356799999999999854 4554211111111111345566677778999966 77999866 9999999
Q ss_pred Ccceeecc
Q 045794 387 GADKISIG 394 (578)
Q Consensus 387 Ga~~vv~g 394 (578)
|||.|.+|
T Consensus 208 GAD~V~VG 215 (368)
T PRK08649 208 GAAGVLVG 215 (368)
T ss_pred CCCEEEEC
Confidence 99999887
No 237
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.17 E-value=1.3e-05 Score=84.73 Aligned_cols=122 Identities=13% Similarity=0.131 Sum_probs=89.9
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++++.+..|.+ +.+++++.... ..-.||.. -+..++++.+++.|+
T Consensus 203 ~EiI~aIR~avG~d-~~v~vris~~~----------------------------~~~~g~~~---eea~~ia~~Le~~Gv 250 (338)
T cd04733 203 LEIYDAIRAAVGPG-FPVGIKLNSAD----------------------------FQRGGFTE---EDALEVVEALEEAGV 250 (338)
T ss_pred HHHHHHHHHHcCCC-CeEEEEEcHHH----------------------------cCCCCCCH---HHHHHHHHHHHHcCC
Confidence 48899999989854 56667653210 00123322 145789999999999
Q ss_pred cEEEEeccCCCCCC------------CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCC
Q 045794 493 GEILLNCIDCDGQG------------KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 493 ~~ii~tdi~~dG~~------------~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~ 560 (578)
+.|-++....+... .+..++..+++++.+++||+++|++.+++++.++++..+||.|++|+++...+.
T Consensus 251 d~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~ 330 (338)
T cd04733 251 DLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPD 330 (338)
T ss_pred CEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCcc
Confidence 99887765432221 233468888999999999999999999999999998667999999999998887
Q ss_pred CHHHHH
Q 045794 561 PIQSVK 566 (578)
Q Consensus 561 ~~~~~~ 566 (578)
-+..++
T Consensus 331 ~~~k~~ 336 (338)
T cd04733 331 LPNKLL 336 (338)
T ss_pred HHHHHh
Confidence 666554
No 238
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.17 E-value=2.3e-05 Score=79.43 Aligned_cols=186 Identities=16% Similarity=0.241 Sum_probs=112.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEec---ccCCCCCC-------------CCchhHHHHHHHh-hhccccEEEeCCccccccCC
Q 045794 308 KPVELARQYYKEGADEISFLNI---TGFRDFPL-------------GDLPMLQVLRLTS-ENVFVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl---~~~~~~~~-------------~~~~~~~~i~~i~-~~~~~pi~~gGGir~~~d~~ 370 (578)
.-.++++.+.+.|+|.|=+ -+ |-.-||+. .-..-++.+++++ +...+|+.+=+-.+.+
T Consensus 27 ~~~~~~~~l~~~Gad~iEl-GiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i---- 101 (258)
T PRK13111 27 TSLEIIKALVEAGADIIEL-GIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPI---- 101 (258)
T ss_pred HHHHHHHHHHHCCCCEEEE-CCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHH----
Confidence 4456777888888885543 11 11111110 1113467788888 4467886554422221
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCcccccee
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAV 450 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~ 450 (578)
+.|.--+-++++.++|++-+++--..++.. +.+.+.++++|-+-|.+ +-
T Consensus 102 -~~~G~e~f~~~~~~aGvdGviipDLp~ee~------------~~~~~~~~~~gl~~I~l-va----------------- 150 (258)
T PRK13111 102 -FQYGVERFAADAAEAGVDGLIIPDLPPEEA------------EELRAAAKKHGLDLIFL-VA----------------- 150 (258)
T ss_pred -hhcCHHHHHHHHHHcCCcEEEECCCCHHHH------------HHHHHHHHHcCCcEEEE-eC-----------------
Confidence 111111238888899999999964333321 23445557787554432 21
Q ss_pred eeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc-CCCCCCCCC--CH-HHHHHHHhhCCCcEE
Q 045794 451 RVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI-DCDGQGKGF--DM-DLIKLISDAVSIPVI 526 (578)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi-~~dG~~~G~--d~-~li~~l~~~~~ipVI 526 (578)
.-+..+.++.+.+..-+.|-+..+ ...|..++. +. +.++++++.+++||+
T Consensus 151 --------------------------p~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~ 204 (258)
T PRK13111 151 --------------------------PTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVA 204 (258)
T ss_pred --------------------------CCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEE
Confidence 113356667677776554444333 224443332 33 588999998899999
Q ss_pred EecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 527 asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+++||++.+|++++.+ .||||+|||++..
T Consensus 205 vGfGI~~~e~v~~~~~--~ADGviVGSaiv~ 233 (258)
T PRK13111 205 VGFGISTPEQAAAIAA--VADGVIVGSALVK 233 (258)
T ss_pred EEcccCCHHHHHHHHH--hCCEEEEcHHHHH
Confidence 9999999999999985 4999999999963
No 239
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.15 E-value=2.2e-05 Score=86.16 Aligned_cols=184 Identities=16% Similarity=0.106 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhh----ccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSEN----VFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~----~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
...+.++.+.+.+...+-++|=++..- +--...++++..... ..-.+.+|.-+...++ ..+.++.|
T Consensus 164 sL~eAl~lM~~~~i~~LPVVD~~g~Lv---GIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~-------~~~ra~~L 233 (475)
T TIGR01303 164 EPRKAFDLLEHAPRDVAPLVDADGTLA---GILTRTGALRATIYTPATDAAGRLRIGAAVGINGD-------VGGKAKAL 233 (475)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCeEE---EEEEHHHHHHHHhCCchhhhccCceehheeeeCcc-------HHHHHHHH
Confidence 455677888889999998887433100 101112333322211 0012334433333222 34779999
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.+.|++.|++.++- .++ ..+ .++++++.+.|..--|++ +
T Consensus 234 v~aGVd~i~~D~a~-g~~-~~~-------~~~i~~i~~~~~~~~vi~--g------------------------------ 272 (475)
T TIGR01303 234 LDAGVDVLVIDTAH-GHQ-VKM-------ISAIKAVRALDLGVPIVA--G------------------------------ 272 (475)
T ss_pred HHhCCCEEEEeCCC-CCc-HHH-------HHHHHHHHHHCCCCeEEE--e------------------------------
Confidence 99999999998877 333 444 388999999895322222 1
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEE--------EeccCCCCCCCCC-----CHHHHHHHHhhCCCcEEEecC
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEIL--------LNCIDCDGQGKGF-----DMDLIKLISDAVSIPVIASSG 530 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii--------~tdi~~dG~~~G~-----d~~li~~l~~~~~ipVIasGG 530 (578)
++...+-++.+.+.|++.|- +|-... +.-|. +++..+..++ .++||||.||
T Consensus 273 -------------~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~--~~~g~~~~~a~~~~~~~~~~-~~~~viadGg 336 (475)
T TIGR01303 273 -------------NVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMM--TGVGRPQFSAVLECAAEARK-LGGHVWADGG 336 (475)
T ss_pred -------------ccCCHHHHHHHHHhCCCEEEECCcCCccccCccc--cCCCCchHHHHHHHHHHHHH-cCCcEEEeCC
Confidence 23346788999999999987 543322 22232 2333333333 4899999999
Q ss_pred CCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 531 AGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 531 i~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
|++..|+.+++. +||++||+|+.|....
T Consensus 337 i~~~~di~kala-~GA~~vm~g~~~ag~~ 364 (475)
T TIGR01303 337 VRHPRDVALALA-AGASNVMVGSWFAGTY 364 (475)
T ss_pred CCCHHHHHHHHH-cCCCEEeechhhcccc
Confidence 999999999996 9999999999986543
No 240
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.15 E-value=8.2e-05 Score=71.85 Aligned_cols=161 Identities=17% Similarity=0.145 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++++...+.|++.+-+.+=+. ...++++.+.+.... +.+| |-+-.. ++++..++
T Consensus 24 ~~~~~~~~~~~~~Gv~~vqlr~k~~---------~~~e~~~~~~~~~~~-~~~g~gtvl~~-----------d~~~~A~~ 82 (187)
T PRK07455 24 ELGLQMAEAVAAGGMRLIEITWNSD---------QPAELISQLREKLPE-CIIGTGTILTL-----------EDLEEAIA 82 (187)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCC---------CHHHHHHHHHHhCCC-cEEeEEEEEcH-----------HHHHHHHH
Confidence 4667889999999999888875433 124556655544332 3344 344444 35999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.|+++..-. +. .++++..+... +.
T Consensus 83 ~gAdgv~~p~~~~---------------~~-~~~~~~~~~~~-i~----------------------------------- 110 (187)
T PRK07455 83 AGAQFCFTPHVDP---------------EL-IEAAVAQDIPI-IP----------------------------------- 110 (187)
T ss_pred cCCCEEECCCCCH---------------HH-HHHHHHcCCCE-Ec-----------------------------------
Confidence 9999998885332 22 34455554321 11
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
| --++.| +.++.+.|++.+-+... .+.. ..+.++.++..+ ++|+++.||| +++++.++++ .
T Consensus 111 -----G-----~~t~~e-~~~A~~~Gadyv~~Fpt---~~~~--G~~~l~~~~~~~~~ipvvaiGGI-~~~n~~~~l~-a 172 (187)
T PRK07455 111 -----G-----ALTPTE-IVTAWQAGASCVKVFPV---QAVG--GADYIKSLQGPLGHIPLIPTGGV-TLENAQAFIQ-A 172 (187)
T ss_pred -----C-----cCCHHH-HHHHHHCCCCEEEECcC---Cccc--CHHHHHHHHhhCCCCcEEEeCCC-CHHHHHHHHH-C
Confidence 1 013344 56666799999988552 1222 457789998888 6999999999 7899999996 9
Q ss_pred CchHHhhhhhhccC
Q 045794 545 NASAALAAGIFHRK 558 (578)
Q Consensus 545 G~~gv~vgsa~~~~ 558 (578)
|+++|.++|++..+
T Consensus 173 Ga~~vav~s~i~~~ 186 (187)
T PRK07455 173 GAIAVGLSGQLFPK 186 (187)
T ss_pred CCeEEEEehhcccC
Confidence 99999999988754
No 241
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.13 E-value=0.00015 Score=71.31 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=112.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccc-c-EEEe-CCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFV-P-LTVG-GGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~-p-i~~g-GGir~~~d~~~~~~~~~~~~~~~ 383 (578)
.+-+.+++.+.+.|++-+=|. ++. ..-++.|++++++..- | +.+| |.|.+.++ +++.
T Consensus 25 ~~a~~~~~al~~~Gi~~iEit-~~~--------~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~-----------~~~a 84 (213)
T PRK06552 25 EEALKISLAVIKGGIKAIEVT-YTN--------PFASEVIKELVELYKDDPEVLIGAGTVLDAVT-----------ARLA 84 (213)
T ss_pred HHHHHHHHHHHHCCCCEEEEE-CCC--------ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHH-----------HHHH
Confidence 477789999999998755443 222 2237889999887642 2 7788 77888755 9999
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.++||+.++- -.+ ++++++. +.+.|- ..
T Consensus 85 ~~aGA~Fivs--P~~-------------~~~v~~~-~~~~~i----~~-------------------------------- 112 (213)
T PRK06552 85 ILAGAQFIVS--PSF-------------NRETAKI-CNLYQI----PY-------------------------------- 112 (213)
T ss_pred HHcCCCEEEC--CCC-------------CHHHHHH-HHHcCC----CE--------------------------------
Confidence 9999998872 122 2455554 455541 11
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVS-IPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~-ipVIasGGi~s~eDi~~l~~ 542 (578)
+.| -.++.|+ .++.+.|++.+-+...+ ..| .+.++.++..++ +|+++.||| +.+.+.+.++
T Consensus 113 -----iPG-----~~T~~E~-~~A~~~Gad~vklFPa~----~~G--~~~ik~l~~~~p~ip~~atGGI-~~~N~~~~l~ 174 (213)
T PRK06552 113 -----LPG-----CMTVTEI-VTALEAGSEIVKLFPGS----TLG--PSFIKAIKGPLPQVNVMVTGGV-NLDNVKDWFA 174 (213)
T ss_pred -----ECC-----cCCHHHH-HHHHHcCCCEEEECCcc----cCC--HHHHHHHhhhCCCCEEEEECCC-CHHHHHHHHH
Confidence 111 1234444 55568999999986522 223 677888888775 999999999 5799999996
Q ss_pred hcCchHHhhhhhhccC
Q 045794 543 KTNASAALAAGIFHRK 558 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~~ 558 (578)
.|++++.+|+.++..
T Consensus 175 -aGa~~vavgs~l~~~ 189 (213)
T PRK06552 175 -AGADAVGIGGELNKL 189 (213)
T ss_pred -CCCcEEEEchHHhCc
Confidence 999999999998754
No 242
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=98.12 E-value=2.1e-05 Score=78.37 Aligned_cols=90 Identities=17% Similarity=0.318 Sum_probs=71.4
Q ss_pred CcEEEEEECCC------CCHHHHHHHHHHCCCeEEEeCCccC----CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHH
Q 045794 47 DSVVTLLDYGA------GNVRSVRNAIRHLGFGIKDVQTPED----ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAY 116 (578)
Q Consensus 47 ~~~I~vld~~~------g~~~~i~~~L~~~Gv~v~~v~~~~d----l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~ 116 (578)
+++|+++-.-+ .+...+.++++.+|+++..++..++ +.++|+|+++||.. ...+..++..++.+.|+++
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt-~~l~~~l~~~gl~~~l~~~ 109 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNT-FQLLKQLYERGLLAPIREA 109 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccH-HHHHHHHHHCCcHHHHHHH
Confidence 45577764321 2456677899999999988877766 78999999999764 4455667777899999999
Q ss_pred HhCCCCEEEEechHHHHhhhc
Q 045794 117 IEKDRPFLGICLGLQLLFQSS 137 (578)
Q Consensus 117 ~~~g~PIlGIClG~QlLa~a~ 137 (578)
+++|+|++|+|.|..+++..+
T Consensus 110 ~~~G~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 110 VKNGTPYIGWSAGANVAGPTI 130 (233)
T ss_pred HHCCCEEEEECHHHHhhhccc
Confidence 999999999999999988854
No 243
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.11 E-value=3e-05 Score=82.19 Aligned_cols=76 Identities=25% Similarity=0.283 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+..++++.+.+.|++.|.+ +-.-....+.....+...|.++.++.++||.+ |++.+.++ +++++++
T Consensus 142 ~~~~e~a~~l~eAGad~I~i-hgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~-----------A~~~~~a 208 (369)
T TIGR01304 142 QNAREIAPIVVKAGADLLVI-QGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGVNDYTT-----------ALHLMRT 208 (369)
T ss_pred cCHHHHHHHHHHCCCCEEEE-eccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCCCCHHH-----------HHHHHHc
Confidence 37889999999999996554 32111001100012345567777788999976 78999876 9999999
Q ss_pred Ccceeecch
Q 045794 387 GADKISIGS 395 (578)
Q Consensus 387 Ga~~vv~gt 395 (578)
|||-|++|.
T Consensus 209 GaDgV~~G~ 217 (369)
T TIGR01304 209 GAAGVIVGP 217 (369)
T ss_pred CCCEEEECC
Confidence 999998664
No 244
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=98.11 E-value=5.1e-05 Score=73.50 Aligned_cols=185 Identities=16% Similarity=0.159 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++|+...+. +.++-..-..-. ..=++.|+.+++.+ +-+|..+.-+-+.-++ .++-.++
T Consensus 16 ~~Ai~~a~~v~~~----~diiEvGTpLik----~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~---------e~~ma~~ 78 (217)
T COG0269 16 EEAIEIAEEVADY----VDIIEVGTPLIK----AEGMRAVRALRELFPDKIIVADLKTADAGAI---------EARMAFE 78 (217)
T ss_pred HHHHHHHHHhhhc----ceEEEeCcHHHH----HhhHHHHHHHHHHCCCCeEEeeeeecchhHH---------HHHHHHH
Confidence 4555666655433 555555321100 11157788888765 4455554444443331 2788999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|||.+.+-.++-. ... ...-+.+++||. -+-+|.-+
T Consensus 79 aGAd~~tV~g~A~~---~TI--------~~~i~~A~~~~~---~v~iDl~~----------------------------- 115 (217)
T COG0269 79 AGADWVTVLGAADD---ATI--------KKAIKVAKEYGK---EVQIDLIG----------------------------- 115 (217)
T ss_pred cCCCEEEEEecCCH---HHH--------HHHHHHHHHcCC---eEEEEeec-----------------------------
Confidence 99998877443332 111 223344577873 34556443
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe-ccCCCCCCCCCC--HHHHHHHHhhCC--CcEEEecCCCCHHHHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLN-CIDCDGQGKGFD--MDLIKLISDAVS--IPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t-di~~dG~~~G~d--~~li~~l~~~~~--ipVIasGGi~s~eDi~~l 540 (578)
..++.+.+++++++|++.+++| +++.. ..|.. ++.+..+++..+ .+|-+.||| +++++..+
T Consensus 116 -----------~~~~~~~~~~l~~~gvd~~~~H~g~D~q--~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI-~~~~i~~~ 181 (217)
T COG0269 116 -----------VWDPEQRAKWLKELGVDQVILHRGRDAQ--AAGKSWGEDDLEKIKKLSDLGAKVAVAGGI-TPEDIPLF 181 (217)
T ss_pred -----------CCCHHHHHHHHHHhCCCEEEEEecccHh--hcCCCccHHHHHHHHHhhccCceEEEecCC-CHHHHHHH
Confidence 2367889999999999999988 34444 24433 356666666554 799999999 78999999
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
.. .|++-+++|+++-...-+-..++
T Consensus 182 ~~-~~~~ivIvGraIt~a~dp~~~a~ 206 (217)
T COG0269 182 KG-IGADIVIVGRAITGAKDPAEAAR 206 (217)
T ss_pred hc-CCCCEEEECchhcCCCCHHHHHH
Confidence 85 89999999999976655443333
No 245
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.11 E-value=4.8e-05 Score=84.07 Aligned_cols=185 Identities=20% Similarity=0.272 Sum_probs=121.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh------hccccEEEeCCccccccCCCCccChHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE------NVFVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~------~~~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
.+..+.++.+.+.+...+-++|=++..-| -...+.|.+... .-.-.+.+|.++...+ .++.+
T Consensus 180 ~~l~eAl~lM~e~~i~~LPVVD~~g~LvG----IIT~~Dilk~~~~P~a~~d~~grL~V~~av~~~~--------~~~ra 247 (502)
T PRK07107 180 TTLKEANDIIWDHKLNTLPIVDKNGNLVY----LVFRKDYDSHKENPLELLDSSKRYVVGAGINTRD--------YAERV 247 (502)
T ss_pred CcHHHHHHHHHHcCCCEEEEEcCCCeEEE----EEEhHHHHhcccChhhhhhhccCeeeeeccChhh--------HHHHH
Confidence 35567788888899999999984321000 001111111100 1123566788885432 36889
Q ss_pred HHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCC
Q 045794 381 SEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGE 460 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (578)
+.|.++|+|.++|.++--.+ .++ .+.++++.+.|+....+. . |
T Consensus 248 ~~Lv~aGvd~i~vd~a~g~~--~~~-------~~~i~~ir~~~~~~~~V~-----a----------------------G- 290 (502)
T PRK07107 248 PALVEAGADVLCIDSSEGYS--EWQ-------KRTLDWIREKYGDSVKVG-----A----------------------G- 290 (502)
T ss_pred HHHHHhCCCeEeecCccccc--HHH-------HHHHHHHHHhCCCCceEE-----e----------------------c-
Confidence 99999999999998433321 122 378899999997332222 1 1
Q ss_pred CcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCCC-CHHHHHHHHhhC-------C--Cc
Q 045794 461 EYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKGF-DMDLIKLISDAV-------S--IP 524 (578)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G~-d~~li~~l~~~~-------~--ip 524 (578)
++-..+-++.+.+.|++.|.+- ..+|.-+.-|+ -+..+.+++++. + +|
T Consensus 291 ----------------nV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~ 354 (502)
T PRK07107 291 ----------------NVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIP 354 (502)
T ss_pred ----------------cccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcce
Confidence 2334678888899999998751 23444454553 566666666543 3 89
Q ss_pred EEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 525 VIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 525 VIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
||+-|||++.-|+.+++. +||++||+|+.|..
T Consensus 355 viadgGir~~gdi~KAla-~GA~~vm~G~~~ag 386 (502)
T PRK07107 355 ICSDGGIVYDYHMTLALA-MGADFIMLGRYFAR 386 (502)
T ss_pred EEEcCCCCchhHHHHHHH-cCCCeeeeChhhhc
Confidence 999999999999999995 99999999999965
No 246
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=98.10 E-value=0.00015 Score=71.59 Aligned_cols=188 Identities=16% Similarity=0.151 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
...+.++...+.|++.||+=.-|+... .+....++.++++.+.+..++.+ .+... ...+.++.+.++|
T Consensus 17 ~~~~~~~~~~~~G~~~i~l~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~v--~l~v~--------d~~~~i~~~~~~g 84 (220)
T PRK05581 17 RLGEEVKAVEAAGADWIHVDVMDGHFV--PNLTIGPPVVEAIRKVTKLPLDV--HLMVE--------NPDRYVPDFAKAG 84 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeCccCCcC--CCcCcCHHHHHHHHhcCCCcEEE--EeeeC--------CHHHHHHHHHHcC
Confidence 344667888889999999843333210 01112467788887655423222 22221 1223477788999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
++.|.+--..... . .+.++.+ +.+| -++.+++..
T Consensus 85 ~d~v~vh~~~~~~---~--------~~~~~~~-~~~~-~~~g~~~~~--------------------------------- 118 (220)
T PRK05581 85 ADIITFHVEASEH---I--------HRLLQLI-KSAG-IKAGLVLNP--------------------------------- 118 (220)
T ss_pred CCEEEEeeccchh---H--------HHHHHHH-HHcC-CEEEEEECC---------------------------------
Confidence 9997762221111 1 1233333 4455 234444320
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHH---HHhhCC-----CcEEEecCCCCHHHHHH
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKL---ISDAVS-----IPVIASSGAGAVEHFSD 539 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~---l~~~~~-----ipVIasGGi~s~eDi~~ 539 (578)
. +..+.++.+.+ +++.+.+..+...++.+..+...++. +++..+ .+|.+.|||+. +++.+
T Consensus 119 ---------~-t~~e~~~~~~~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~ 186 (220)
T PRK05581 119 ---------A-TPLEPLEDVLD-LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKE 186 (220)
T ss_pred ---------C-CCHHHHHHHHh-hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHH
Confidence 0 12455555543 37877776664444444445544444 433322 33568899966 89999
Q ss_pred HHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 540 VFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
+.+ .|++++++||++.+.+-+...++
T Consensus 187 l~~-~GaD~vvvgSai~~~~d~~~~~~ 212 (220)
T PRK05581 187 CAE-AGADVFVAGSAVFGAPDYKEAID 212 (220)
T ss_pred HHH-cCCCEEEEChhhhCCCCHHHHHH
Confidence 985 89999999999986554333333
No 247
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=98.10 E-value=3e-05 Score=81.99 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHcC-CcEEEEeccCCC------------CCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 045794 479 GAYELAKAVEDLG-AGEILLNCIDCD------------GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTN 545 (578)
Q Consensus 479 ~~~e~~~~~~~~G-~~~ii~tdi~~d------------G~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G 545 (578)
+..++++.+++.| ++.|-++.-... ....++++++.+.+++.+++|||++|++.+++++.++++..+
T Consensus 229 e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~ 308 (343)
T cd04734 229 EALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGH 308 (343)
T ss_pred HHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCC
Confidence 3578999999998 898887532111 122355789999999999999999999999999999998777
Q ss_pred chHHhhhhhhccCCCCHHHHH
Q 045794 546 ASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 546 ~~gv~vgsa~~~~~~~~~~~~ 566 (578)
+|+|++|+++...+.-+..++
T Consensus 309 ~D~V~~gR~~ladP~l~~k~~ 329 (343)
T cd04734 309 ADMVGMTRAHIADPHLVAKAR 329 (343)
T ss_pred CCeeeecHHhHhCccHHHHHH
Confidence 999999999998887666554
No 248
>PRK04302 triosephosphate isomerase; Provisional
Probab=98.09 E-value=9.7e-05 Score=73.37 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=57.9
Q ss_pred HHHHHHHcCCcEEEEeccCCCCCCCC---CCH----HHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhh
Q 045794 483 LAKAVEDLGAGEILLNCIDCDGQGKG---FDM----DLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 483 ~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~----~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa 554 (578)
.++.+.+.+.+.|-+..+..-|+..+ ... +.++.+++.. ++||+++|||++.+++..+++ .|+|||+||++
T Consensus 126 ~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~-~gadGvlVGsa 204 (223)
T PRK04302 126 TSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALE-LGADGVLLASG 204 (223)
T ss_pred HHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHc-CCCCEEEEehH
Confidence 44456777888777777655555444 222 3344465533 689999999999999999985 89999999999
Q ss_pred hccCCCCHH
Q 045794 555 FHRKEVPIQ 563 (578)
Q Consensus 555 ~~~~~~~~~ 563 (578)
+...+....
T Consensus 205 ~l~~~~~~~ 213 (223)
T PRK04302 205 VVKAKDPEA 213 (223)
T ss_pred HhCCcCHHH
Confidence 987654333
No 249
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.09 E-value=0.00015 Score=71.96 Aligned_cols=177 Identities=14% Similarity=0.104 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHcC-CCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEG-ADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g-~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+.++.++...+.| ++.|.+=+=+.... .......-++++++..++++.+- +. ++-.++.
T Consensus 27 ~~~~~l~~al~~G~v~~vQlR~K~l~~~---~~~~~a~~l~~l~~~~gv~liIN----d~-------------~dlA~~~ 86 (221)
T PRK06512 27 ELAKLLRAALQGGDVASVILPQYGLDEA---TFQKQAEKLVPVIQEAGAAALIA----GD-------------SRIAGRV 86 (221)
T ss_pred cHHHHHHHHHcCCCccEEEEeCCCCCHH---HHHHHHHHHHHHHHHhCCEEEEe----CH-------------HHHHHHh
Confidence 5677888888889 68888753332100 01122344555666668999863 32 5567788
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|||.|=+|..... +.++.++.|++.+ +++.+-+
T Consensus 87 ~adGVHLg~~d~~----------------~~~~r~~~~~~~i-iG~s~~~------------------------------ 119 (221)
T PRK06512 87 KADGLHIEGNLAA----------------LAEAIEKHAPKMI-VGFGNLR------------------------------ 119 (221)
T ss_pred CCCEEEECccccC----------------HHHHHHhcCCCCE-EEecCCC------------------------------
Confidence 9999988853221 3566667776544 3332111
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC--CCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD--GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d--G~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
+ .+-+.++.+.|++.+.+-.+-.. .......+++++.+++.+++||+|-||| +.+++.++.+ .
T Consensus 120 ------------s-~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~-~ 184 (221)
T PRK06512 120 ------------D-RHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAE-T 184 (221)
T ss_pred ------------C-HHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHH-h
Confidence 1 23345567899999997655311 1112235788888888889999999999 8899999985 9
Q ss_pred CchHHhhhhhhccCCCCHHHHH
Q 045794 545 NASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
|++||.+-|++...+-+...++
T Consensus 185 GA~giAvisai~~~~dp~~a~~ 206 (221)
T PRK06512 185 GAEFVALERAVFDAHDPPLAVA 206 (221)
T ss_pred CCCEEEEhHHhhCCCCHHHHHH
Confidence 9999999999986554333333
No 250
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=98.09 E-value=0.0001 Score=80.29 Aligned_cols=187 Identities=20% Similarity=0.186 Sum_probs=128.0
Q ss_pred EecCCHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 304 RNLGKPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 304 ~~~~~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
...-||.++|+.| +.||..|.++ |=.-+ +| +++.++++++.+.+||.- ++ ||.-. -++.+
T Consensus 67 ~~~~d~~~~a~~y-~~gA~aiSVlTe~~~F-~G------s~~~l~~vr~~v~~PvLr----KD------Fiid~-~QI~e 127 (454)
T PRK09427 67 RDDFDPAEIARVY-KHYASAISVLTDEKYF-QG------SFDFLPIVRAIVTQPILC----KD------FIIDP-YQIYL 127 (454)
T ss_pred CCCCCHHHHHHHH-HcCCeEEEEecCcCcC-CC------CHHHHHHHHHhCCCCEEe----cc------ccCCH-HHHHH
Confidence 3345999999999 8899888774 43333 21 266777888888899953 22 22222 23666
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
...+|||-|.+=..++.+ ..+ +.+-+.+...|-+.+| -+
T Consensus 128 a~~~GADavLLI~~~L~~-~~l---------~~l~~~a~~lGl~~lv-Ev------------------------------ 166 (454)
T PRK09427 128 ARYYGADAILLMLSVLDD-EQY---------RQLAAVAHSLNMGVLT-EV------------------------------ 166 (454)
T ss_pred HHHcCCCchhHHHHhCCH-HHH---------HHHHHHHHHcCCcEEE-EE------------------------------
Confidence 667899999887777763 112 3344556778855322 11
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l 540 (578)
+ + .+-++++.+.|++-|-+++++-.- + -.|++...++.... ++.+|+.+||.+++|+..+
T Consensus 167 -------h------~---~~El~~al~~~a~iiGiNnRdL~t-~-~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~ 228 (454)
T PRK09427 167 -------S------N---EEELERAIALGAKVIGINNRNLRD-L-SIDLNRTRELAPLIPADVIVISESGIYTHAQVREL 228 (454)
T ss_pred -------C------C---HHHHHHHHhCCCCEEEEeCCCCcc-c-eECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH
Confidence 1 1 345566677899887788877652 2 25777777776655 5678999999999999998
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
. .|++|++||+++...+-+-..+++++.
T Consensus 229 ~--~~~davLiG~~lm~~~d~~~~~~~L~~ 256 (454)
T PRK09427 229 S--PFANGFLIGSSLMAEDDLELAVRKLIL 256 (454)
T ss_pred H--hcCCEEEECHHHcCCCCHHHHHHHHhc
Confidence 5 379999999999988876666666644
No 251
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.08 E-value=0.00016 Score=71.09 Aligned_cols=172 Identities=14% Similarity=0.181 Sum_probs=115.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+-+++++.+.+.|++-|=|. ++. ..-++.|++++++.. .+.+| |-|.+. ++++..++
T Consensus 27 ~~a~~i~~al~~~Gi~~iEit-l~~--------~~~~~~I~~l~~~~p-~~~IGAGTVl~~-----------~~a~~a~~ 85 (212)
T PRK05718 27 EDAVPLAKALVAGGLPVLEVT-LRT--------PAALEAIRLIAKEVP-EALIGAGTVLNP-----------EQLAQAIE 85 (212)
T ss_pred HHHHHHHHHHHHcCCCEEEEe-cCC--------ccHHHHHHHHHHHCC-CCEEEEeeccCH-----------HHHHHHHH
Confidence 477889999999999977666 433 123788999988765 46677 445554 45999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.++.-. + ++++++.. .+++- ..
T Consensus 86 aGA~FivsP~--~-------------~~~vi~~a-~~~~i----~~---------------------------------- 111 (212)
T PRK05718 86 AGAQFIVSPG--L-------------TPPLLKAA-QEGPI----PL---------------------------------- 111 (212)
T ss_pred cCCCEEECCC--C-------------CHHHHHHH-HHcCC----CE----------------------------------
Confidence 9999877632 2 23455554 44431 11
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
+.| -.++.| +.++.++|++.+-+.+.+.-| ....++.++... .+|+++.||| +.+++.+.++ .
T Consensus 112 ---iPG-----~~TptE-i~~a~~~Ga~~vKlFPa~~~g-----g~~~lk~l~~p~p~~~~~ptGGV-~~~ni~~~l~-a 175 (212)
T PRK05718 112 ---IPG-----VSTPSE-LMLGMELGLRTFKFFPAEASG-----GVKMLKALAGPFPDVRFCPTGGI-SPANYRDYLA-L 175 (212)
T ss_pred ---eCC-----CCCHHH-HHHHHHCCCCEEEEccchhcc-----CHHHHHHHhccCCCCeEEEeCCC-CHHHHHHHHh-C
Confidence 111 235666 788999999999998744332 456777777655 6999999999 5699999985 7
Q ss_pred CchHHhhhhhhccCCC----CHHHHHHHH
Q 045794 545 NASAALAAGIFHRKEV----PIQSVKEHL 569 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~----~~~~~~~~l 569 (578)
|...++.|+.+..... .++++.+..
T Consensus 176 g~v~~vggs~L~~~~~~~~~~~~~i~~~a 204 (212)
T PRK05718 176 PNVLCIGGSWMVPKDAIENGDWDRITRLA 204 (212)
T ss_pred CCEEEEEChHhCCcchhccccHHHHHHHH
Confidence 8666666887765332 344455443
No 252
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=98.08 E-value=6.6e-05 Score=72.02 Aligned_cols=166 Identities=18% Similarity=0.229 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+-++.++...+.|++.+++=+=+.... ......+.+.+++++.++++.+.. . .+-+.+.
T Consensus 12 ~~~~~~l~~~~~~gv~~v~lR~k~~~~~---~~~~~a~~l~~~~~~~~~~liin~----~-------------~~la~~~ 71 (180)
T PF02581_consen 12 DDFLEQLEAALAAGVDLVQLREKDLSDE---ELLELARRLAELCQKYGVPLIIND----R-------------VDLALEL 71 (180)
T ss_dssp CHHHHHHHHHHHTT-SEEEEE-SSS-HH---HHHHHHHHHHHHHHHTTGCEEEES------------------HHHHHHC
T ss_pred chHHHHHHHHHHCCCcEEEEcCCCCCcc---HHHHHHHHHHHHhhcceEEEEecC----C-------------HHHHHhc
Confidence 4677888888899999888866443110 112223445555566678998644 2 5567889
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|++.|=++..... ..++.+.+++.. +++..+.
T Consensus 72 ~~dGvHl~~~~~~----------------~~~~r~~~~~~~-~ig~S~h------------------------------- 103 (180)
T PF02581_consen 72 GADGVHLGQSDLP----------------PAEARKLLGPDK-IIGASCH------------------------------- 103 (180)
T ss_dssp T-SEEEEBTTSSS----------------HHHHHHHHTTTS-EEEEEES-------------------------------
T ss_pred CCCEEEecccccc----------------hHHhhhhcccce-EEEeecC-------------------------------
Confidence 9999999874432 234445455443 3333321
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC---CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG---KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRK 543 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~---~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~ 543 (578)
+ .+-++++.+.|++.+.+-.+-..-+. ....++.++++++...+||+|-||| +++++.++.+
T Consensus 104 ------------~-~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~~- 168 (180)
T PF02581_consen 104 ------------S-LEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI-TPENIPELRE- 168 (180)
T ss_dssp ------------S-HHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHH-
T ss_pred ------------c-HHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-
Confidence 2 23488888999999998776333332 4457899999999999999999999 7899999985
Q ss_pred cCchHHhhhhhh
Q 045794 544 TNASAALAAGIF 555 (578)
Q Consensus 544 ~G~~gv~vgsa~ 555 (578)
+|++|+.+.+++
T Consensus 169 ~Ga~gvAvi~aI 180 (180)
T PF02581_consen 169 AGADGVAVISAI 180 (180)
T ss_dssp TT-SEEEESHHH
T ss_pred cCCCEEEEEeeC
Confidence 999999887764
No 253
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.08 E-value=0.00012 Score=71.64 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=100.5
Q ss_pred HHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 343 LQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 343 ~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
++.|+++++.. +..+ +-+++-. | |.-..++++.++|||.|++-..+-. ... .++++. .+
T Consensus 40 ~~~i~~l~~~~~~~~i--~~d~k~~-d------~~~~~~~~~~~~Gad~i~vh~~~~~---~~~-------~~~i~~-~~ 99 (206)
T TIGR03128 40 IEAVKEMKEAFPDRKV--LADLKTM-D------AGEYEAEQAFAAGADIVTVLGVADD---ATI-------KGAVKA-AK 99 (206)
T ss_pred HHHHHHHHHHCCCCEE--EEEEeec-c------chHHHHHHHHHcCCCEEEEeccCCH---HHH-------HHHHHH-HH
Confidence 57788887763 3333 3344422 1 1112488999999999987543321 000 134444 56
Q ss_pred hCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC
Q 045794 422 VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID 501 (578)
Q Consensus 422 ~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~ 501 (578)
++|- .+++.+ -+ .-++.+.++.+.+.|++.+.++.-.
T Consensus 100 ~~g~-~~~~~~--~~----------------------------------------~~t~~~~~~~~~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 100 KHGK-EVQVDL--IN----------------------------------------VKDKVKRAKELKELGADYIGVHTGL 136 (206)
T ss_pred HcCC-EEEEEe--cC----------------------------------------CCChHHHHHHHHHcCCCEEEEcCCc
Confidence 6773 333322 11 1135677777888899988765432
Q ss_pred CCCCCCCCCHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 502 CDGQGKGFDMDLIKLISDAVS-IPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 502 ~dG~~~G~d~~li~~l~~~~~-ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.........++.++++++..+ .++.+.||| +.+.+.++++ .|++++++|+++...+. ..+..+.|+
T Consensus 137 ~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~-~Ga~~v~vGsai~~~~d-~~~~~~~l~ 203 (206)
T TIGR03128 137 DEQAKGQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIK-LGPDIVIVGGAITKAAD-PAEAARQIR 203 (206)
T ss_pred CcccCCCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHH-cCCCEEEEeehhcCCCC-HHHHHHHHH
Confidence 223333446778888877664 455569999 8899999985 99999999999986543 555555554
No 254
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.07 E-value=4.2e-05 Score=80.75 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=100.5
Q ss_pred HHHHHHHcCcceeecchhh----------------------hccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccc
Q 045794 379 VASEYFRSGADKISIGSDA----------------------VYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRR 436 (578)
Q Consensus 379 ~~~~~l~~Ga~~vv~gt~~----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~ 436 (578)
.++++.++|.|.|=|...- +.++..|+ .+.++.+.+.+|++ +.+++++.-
T Consensus 159 aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~-------~eiv~aIR~~vG~d-~~v~vri~~ 230 (336)
T cd02932 159 AARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFL-------LEVVDAVRAVWPED-KPLFVRISA 230 (336)
T ss_pred HHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHH-------HHHHHHHHHHcCCC-ceEEEEEcc
Confidence 3778888899988774321 01112222 48899999999865 556666542
Q ss_pred cccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC-----CCCCCH
Q 045794 437 VYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ-----GKGFDM 511 (578)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~-----~~G~d~ 511 (578)
.. ..-.||. .-+..++++.+++.|++.|-++.-..... ..+.++
T Consensus 231 ~~----------------------------~~~~g~~---~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~ 279 (336)
T cd02932 231 TD----------------------------WVEGGWD---LEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQV 279 (336)
T ss_pred cc----------------------------cCCCCCC---HHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccH
Confidence 10 0001222 12357889999999999887653111111 134467
Q ss_pred HHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHH
Q 045794 512 DLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQS 564 (578)
Q Consensus 512 ~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~ 564 (578)
+.++++++.+++||+++|++.+++++.++++...||.|++|+++...+.....
T Consensus 280 ~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k 332 (336)
T cd02932 280 PFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLH 332 (336)
T ss_pred HHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHH
Confidence 89999999999999999999999999999975559999999999887754433
No 255
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.07 E-value=7.7e-05 Score=75.14 Aligned_cols=166 Identities=17% Similarity=0.129 Sum_probs=100.1
Q ss_pred HHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhC
Q 045794 344 QVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY 423 (578)
Q Consensus 344 ~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (578)
++++++++.+.+|+.+=+-.+. +++.-.+-++.+.++|++.+++=-..++..++ .+-+-+..+++
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~------~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~---------~~~~~~~~~~~ 128 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLED------YVDSLDNFLNMARDVGADGVLFPDLLIDYPDD---------LEKYVEIIKNK 128 (244)
T ss_pred HHHHHHhccCCCCEEEEEecch------hhhCHHHHHHHHHHcCCCEEEECCCCCCcHHH---------HHHHHHHHHHc
Confidence 5788888778889842111111 11111123788999999999985322210011 12234455778
Q ss_pred CCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC
Q 045794 424 GNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD 503 (578)
Q Consensus 424 g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d 503 (578)
|-+ .++.+.. -++.+.++.+.+. .+.+++..+..
T Consensus 129 Gl~-~~~~v~p-------------------------------------------~T~~e~l~~~~~~-~~~~l~msv~~- 162 (244)
T PRK13125 129 GLK-PVFFTSP-------------------------------------------KFPDLLIHRLSKL-SPLFIYYGLRP- 162 (244)
T ss_pred CCC-EEEEECC-------------------------------------------CCCHHHHHHHHHh-CCCEEEEEeCC-
Confidence 865 4444431 1234556666665 45566554321
Q ss_pred CCCCCC--C-HHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc--CCCCHHHHHHHHHh
Q 045794 504 GQGKGF--D-MDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR--KEVPIQSVKEHLYK 571 (578)
Q Consensus 504 G~~~G~--d-~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~--~~~~~~~~~~~l~~ 571 (578)
|+.+-+ + .+.++++++.. +.|+++.|||++.++++++.+ .|+|++++||++.+ ..-.++++.+++++
T Consensus 163 ~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~-~gaD~vvvGSai~~~~~~~~~~~~~~~~~~ 235 (244)
T PRK13125 163 ATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALS-AGADGVVVGTAFIEELEKNGVESALNLLKK 235 (244)
T ss_pred CCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHH-cCCCEEEECHHHHHHHHhcCHHHHHHHHHH
Confidence 222223 3 24677777766 579999999999999999985 89999999999964 12236666666654
No 256
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.04 E-value=0.00026 Score=69.72 Aligned_cols=180 Identities=8% Similarity=0.042 Sum_probs=115.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+..+.++...+.|++.|++=+-+.... .......-+.+++++.++++.+- +. ++-..+.|
T Consensus 20 ~~~~~l~~~l~~G~~~vqLR~k~~~~~---~~~~la~~l~~~~~~~~~~liIn----d~-------------~~lA~~~~ 79 (211)
T PRK03512 20 DSVQWIERLLDAGVRTLQLRIKDRRDE---EVEADVVAAIALGRRYQARLFIN----DY-------------WRLAIKHQ 79 (211)
T ss_pred CCHHHHHHHHhCCCCEEEEcCCCCCHH---HHHHHHHHHHHHHHHhCCeEEEe----CH-------------HHHHHHcC
Confidence 445678888889999888864443110 00111233445556678898763 32 55567789
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
++.|=+|..... ..++.+..|..+ ++++.+.
T Consensus 80 adGVHlg~~d~~----------------~~~~r~~~~~~~-~iG~S~H-------------------------------- 110 (211)
T PRK03512 80 AYGVHLGQEDLE----------------TADLNAIRAAGL-RLGVSTH-------------------------------- 110 (211)
T ss_pred CCEEEcChHhCC----------------HHHHHHhcCCCC-EEEEeCC--------------------------------
Confidence 999988854332 123333345332 3444321
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC----CCCCCCCCCHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHH
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCID----CDGQGKGFDMDLIKLISDA-VSIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~----~dG~~~G~d~~li~~l~~~-~~ipVIasGGi~s~eDi~~l~~ 542 (578)
+ .+-+.++.+.|++.+.+-.+- +.+......++.++++.+. .++||+|-||| +.+++.++.+
T Consensus 111 -----------~-~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI-~~~ni~~l~~ 177 (211)
T PRK03512 111 -----------D-DMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGI-SLERAPAVLA 177 (211)
T ss_pred -----------C-HHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCC-CHHHHHHHHH
Confidence 1 234566778899999966553 3333344578888888766 48999999999 5899999985
Q ss_pred hcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 543 KTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.|++|+.+-+++...+-..+.++++++
T Consensus 178 -~Ga~GiAvisai~~~~d~~~~~~~l~~ 204 (211)
T PRK03512 178 -TGVGSIAVVSAITQAADWRAATAQLLE 204 (211)
T ss_pred -cCCCEEEEhhHhhCCCCHHHHHHHHHH
Confidence 999999999999866654444444443
No 257
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.03 E-value=2.8e-05 Score=65.75 Aligned_cols=72 Identities=28% Similarity=0.439 Sum_probs=55.5
Q ss_pred HHHHHHHHHHCCCeEEEeCCccC-------CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHH
Q 045794 60 VRSVRNAIRHLGFGIKDVQTPED-------ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQL 132 (578)
Q Consensus 60 ~~~i~~~L~~~Gv~v~~v~~~~d-------l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~Ql 132 (578)
...+.+.++..++++.+++.... ..++|++|+|||........ ....+.+.+++..+.++|++|+|.|+|+
T Consensus 14 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~--~~~~~~~~i~~~~~~~~~i~~~c~g~~~ 91 (115)
T cd01653 14 LASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA--RDEALLALLREAAAAGKPILGICLGAQL 91 (115)
T ss_pred hHHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhc--cCHHHHHHHHHHHHcCCEEEEECchhHh
Confidence 35778899999999998876432 57899999999865433321 1124567888888889999999999999
Q ss_pred H
Q 045794 133 L 133 (578)
Q Consensus 133 L 133 (578)
+
T Consensus 92 l 92 (115)
T cd01653 92 L 92 (115)
T ss_pred H
Confidence 9
No 258
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.01 E-value=7.7e-05 Score=75.75 Aligned_cols=186 Identities=17% Similarity=0.212 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEec---ccCCCCCC-------------CCchhHHHHHHHhhhccccEEEeCCccccccCCC
Q 045794 308 KPVELARQYYKEGADEISFLNI---TGFRDFPL-------------GDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANG 371 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl---~~~~~~~~-------------~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~ 371 (578)
.-.++++.+.+.|+|-|=+ -+ |-.-||+. .-..-++++++++++..+|+.+=+-.+.+
T Consensus 30 ~~~~~~~~l~~~Gad~iEl-GiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i----- 103 (263)
T CHL00200 30 ITKKALKILDKKGADIIEL-GIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPV----- 103 (263)
T ss_pred HHHHHHHHHHHCCCCEEEE-CCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHH-----
Confidence 3457788888888885443 11 11111110 11234677888887778886543333221
Q ss_pred CccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceee
Q 045794 372 RHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVR 451 (578)
Q Consensus 372 ~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~ 451 (578)
+.|.--+-++++.++|+|.+++=-..+++. +-+.+.++++|-+- +..+-
T Consensus 104 ~~~G~e~F~~~~~~aGvdgviipDLP~ee~------------~~~~~~~~~~gi~~-I~lv~------------------ 152 (263)
T CHL00200 104 LHYGINKFIKKISQAGVKGLIIPDLPYEES------------DYLISVCNLYNIEL-ILLIA------------------ 152 (263)
T ss_pred HHhCHHHHHHHHHHcCCeEEEecCCCHHHH------------HHHHHHHHHcCCCE-EEEEC------------------
Confidence 111111237888899999999965555432 23445667788543 33221
Q ss_pred eccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc-CCCCCCCCC--C-HHHHHHHHhhCCCcEEE
Q 045794 452 VTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI-DCDGQGKGF--D-MDLIKLISDAVSIPVIA 527 (578)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi-~~dG~~~G~--d-~~li~~l~~~~~ipVIa 527 (578)
.-+..+.++.+.+..-+.|.+.+. ...|...-. + .++++++++.++.|+.+
T Consensus 153 -------------------------PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v 207 (263)
T CHL00200 153 -------------------------PTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIIL 207 (263)
T ss_pred -------------------------CCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEE
Confidence 113356666666664445555442 222222121 2 25778888888999999
Q ss_pred ecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 528 SSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 528 sGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
++||+++++++++.+ .|+|||+|||++-
T Consensus 208 GFGI~~~e~~~~~~~-~GADGvVVGSalv 235 (263)
T CHL00200 208 GFGISTSEQIKQIKG-WNINGIVIGSACV 235 (263)
T ss_pred ECCcCCHHHHHHHHh-cCCCEEEECHHHH
Confidence 999999999999985 8999999999993
No 259
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=97.98 E-value=5.8e-05 Score=79.67 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+..++++.+++.|++.|-++.-.......+++++..+++++.+++|||++||+. ++++.++++..+||.|++|+++...
T Consensus 242 e~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~lad 320 (338)
T cd02933 242 TFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIAN 320 (338)
T ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhC
Confidence 346899999999999888744222223367899999999999999999999997 9999999986679999999999988
Q ss_pred CCCHHHHH
Q 045794 559 EVPIQSVK 566 (578)
Q Consensus 559 ~~~~~~~~ 566 (578)
+.-+..++
T Consensus 321 P~~~~k~~ 328 (338)
T cd02933 321 PDLVERLK 328 (338)
T ss_pred cCHHHHHh
Confidence 87666554
No 260
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.97 E-value=0.00033 Score=68.47 Aligned_cols=181 Identities=20% Similarity=0.181 Sum_probs=115.4
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-----ccEEEeCCccccccCCCCccChHHHHHH-HH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-----VPLTVGGGIRDFTDANGRHYSSLEVASE-YF 384 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-----~pi~~gGGir~~~d~~~~~~~~~~~~~~-~l 384 (578)
+-|+...+.|++.+-++.-+.. .|....+..+++.+.+. +++.+ -++.+.+.+ +.
T Consensus 10 ed~~~a~~~Gvd~ig~i~~~~s-----~R~v~~~~a~~l~~~~~~~~~~V~v~v--------------n~~~~~i~~ia~ 70 (203)
T cd00405 10 EDALAAAEAGADAIGFIFAPKS-----PRYVSPEQAREIVAALPPFVKRVGVFV--------------NEDLEEILEIAE 70 (203)
T ss_pred HHHHHHHHcCCCEEEEecCCCC-----CCCCCHHHHHHHHHhCCCCCcEEEEEe--------------CCCHHHHHHHHH
Confidence 5566667899999999866542 12334566666666442 33322 222333444 44
Q ss_pred HcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
+.|+|.|=++..- + ++.++++.+.+|. .++.++.+...
T Consensus 71 ~~~~d~Vqlhg~e---~-----------~~~~~~l~~~~~~-~~i~~i~~~~~--------------------------- 108 (203)
T cd00405 71 ELGLDVVQLHGDE---S-----------PEYCAQLRARLGL-PVIKAIRVKDE--------------------------- 108 (203)
T ss_pred hcCCCEEEECCCC---C-----------HHHHHHHHhhcCC-cEEEEEecCCh---------------------------
Confidence 6789988887421 1 2456777776764 35543432210
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC---CCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD---GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d---G~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~ 541 (578)
...+. ......+++.+++-.-+.. |+..-+||++++++. ..+|++++||| +++.+.+++
T Consensus 109 --------------~~~~~-~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i 170 (203)
T cd00405 109 --------------EDLEK-AAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAI 170 (203)
T ss_pred --------------hhHHH-hhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCC-ChHHHHHHH
Confidence 01122 2334568898876433332 244556999998876 67899999999 899999999
Q ss_pred HhcC-chHHhhhhhhcc--CCCCHHHHHHHHHh
Q 045794 542 RKTN-ASAALAAGIFHR--KEVPIQSVKEHLYK 571 (578)
Q Consensus 542 ~~~G-~~gv~vgsa~~~--~~~~~~~~~~~l~~ 571 (578)
+ .+ ++|+.+.|++.. |..++..++++++.
T Consensus 171 ~-~~~~~gvdv~S~ie~~pg~kd~~ki~~~~~~ 202 (203)
T cd00405 171 R-LVRPYGVDVSSGVETSPGIKDPEKIRAFIEA 202 (203)
T ss_pred H-hcCCCEEEcCCcccCCCCCcCHHHHHHHHHh
Confidence 6 66 999999999864 66778888887753
No 261
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=97.97 E-value=2.6e-05 Score=73.88 Aligned_cols=99 Identities=19% Similarity=0.260 Sum_probs=83.2
Q ss_pred eeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHH
Q 045794 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLR 347 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~ 347 (578)
.|++.++|+| +|++. +- ...++++..+.++..--..++++|+++- |+ .++.|.+++.
T Consensus 118 ~r~vvslD~k---~~~Ll--~~---------------~~ed~le~Vk~l~~~~~~~lIvLDi~aV--Gt-~~G~~~E~l~ 174 (229)
T COG1411 118 GRIVVSLDVK---GGELL--GP---------------WLEDFLETVKDLNYRRDPGLIVLDIGAV--GT-KSGPDYELLT 174 (229)
T ss_pred cceEEEEecC---CCeec--CC---------------CchhHHHHHHHHhccCCCCeEEEEcccc--cc-ccCCCHHHHH
Confidence 5899999999 77632 11 1579999999988877777999999975 22 3578899999
Q ss_pred HHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 348 LTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 348 ~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
.+...+.-|+.+||||+-+|| ++.+..+|++.+.++|+..+-
T Consensus 175 ~~~~~s~~pVllGGGV~g~Ed-----------lel~~~~Gv~gvLvaTalh~G 216 (229)
T COG1411 175 KVLELSEHPVLLGGGVGGMED-----------LELLLGMGVSGVLVATALHEG 216 (229)
T ss_pred HHHHhccCceeecCCcCcHHH-----------HHHHhcCCCceeeehhhhhcC
Confidence 999988899999999999987 888888999999999998873
No 262
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.96 E-value=0.00031 Score=68.48 Aligned_cols=172 Identities=14% Similarity=0.192 Sum_probs=117.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+-+++++.+.+.|++-+= +.++. ..-++.|++++++.. .+.+| |.|.+.++ ++++.+
T Consensus 20 e~a~~~~~al~~~Gi~~iE-it~~t--------~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~-----------a~~a~~ 78 (204)
T TIGR01182 20 DDALPLAKALIEGGLRVLE-VTLRT--------PVALDAIRLLRKEVP-DALIGAGTVLNPEQ-----------LRQAVD 78 (204)
T ss_pred HHHHHHHHHHHHcCCCEEE-EeCCC--------ccHHHHHHHHHHHCC-CCEEEEEeCCCHHH-----------HHHHHH
Confidence 4677899999999998444 44433 223788999988765 47777 77888755 999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.++--. + ++++++. ++++|- ..
T Consensus 79 aGA~FivsP~--~-------------~~~v~~~-~~~~~i----~~---------------------------------- 104 (204)
T TIGR01182 79 AGAQFIVSPG--L-------------TPELAKH-AQDHGI----PI---------------------------------- 104 (204)
T ss_pred cCCCEEECCC--C-------------CHHHHHH-HHHcCC----cE----------------------------------
Confidence 9999885432 1 2345544 566651 11
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
+.| -.++-| +..+.++|++.+=+...+. +.|+ ..++.++.-+ ++|++..||| +.+.+.+.++ .
T Consensus 105 ---iPG-----~~TptE-i~~A~~~Ga~~vKlFPA~~---~GG~--~yikal~~plp~i~~~ptGGV-~~~N~~~~l~-a 168 (204)
T TIGR01182 105 ---IPG-----VATPSE-IMLALELGITALKLFPAEV---SGGV--KMLKALAGPFPQVRFCPTGGI-NLANVRDYLA-A 168 (204)
T ss_pred ---ECC-----CCCHHH-HHHHHHCCCCEEEECCchh---cCCH--HHHHHHhccCCCCcEEecCCC-CHHHHHHHHh-C
Confidence 111 123444 4556689999999888543 2234 4667776655 6999999999 5699999995 9
Q ss_pred CchHHhhhhhhccCCC----CHHHHHHHH
Q 045794 545 NASAALAAGIFHRKEV----PIQSVKEHL 569 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~----~~~~~~~~l 569 (578)
|+.++.+||.+..... +++++++..
T Consensus 169 Ga~~vg~Gs~L~~~~~~~~~~~~~i~~~a 197 (204)
T TIGR01182 169 PNVACGGGSWLVPKDLIAAGDWDEITRLA 197 (204)
T ss_pred CCEEEEEChhhcCchhhccccHHHHHHHH
Confidence 9999999999976442 345555544
No 263
>PLN02591 tryptophan synthase
Probab=97.94 E-value=0.00017 Score=72.72 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=110.7
Q ss_pred HHHHHHHHHHcCCCeEEEEec---ccCCCCCC-------------CCchhHHHHHHHhhhccccEEEeCCccccccCCCC
Q 045794 309 PVELARQYYKEGADEISFLNI---TGFRDFPL-------------GDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGR 372 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl---~~~~~~~~-------------~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~ 372 (578)
-+++++.+.+.|+|-|=+ -+ |-.-||+. .-..-++++++++++..+|+.+=+-.+.+ +
T Consensus 18 ~~~~~~~l~~~Gad~iEl-GiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i-----~ 91 (250)
T PLN02591 18 TAEALRLLDACGADVIEL-GVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPI-----L 91 (250)
T ss_pred HHHHHHHHHHCCCCEEEE-CCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHH-----H
Confidence 356777888888884432 11 11111110 11234677888887778886543333321 1
Q ss_pred ccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeee
Q 045794 373 HYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRV 452 (578)
Q Consensus 373 ~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~ 452 (578)
.|.--+-++++-++|++-+++--..++.. +.+.+.++++|=+ .+..+-
T Consensus 92 ~~G~~~F~~~~~~aGv~GviipDLP~ee~------------~~~~~~~~~~gl~-~I~lv~------------------- 139 (250)
T PLN02591 92 KRGIDKFMATIKEAGVHGLVVPDLPLEET------------EALRAEAAKNGIE-LVLLTT------------------- 139 (250)
T ss_pred HhHHHHHHHHHHHcCCCEEEeCCCCHHHH------------HHHHHHHHHcCCe-EEEEeC-------------------
Confidence 11111237788899999999965444422 3345556778754 333231
Q ss_pred ccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEec-cCCCCCCCC--CCH-HHHHHHHhhCCCcEEEe
Q 045794 453 TDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNC-IDCDGQGKG--FDM-DLIKLISDAVSIPVIAS 528 (578)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~td-i~~dG~~~G--~d~-~li~~l~~~~~ipVIas 528 (578)
.-+..+.++++.+..-+.|-+.+ ....|...+ .++ +.++++++.+++||+++
T Consensus 140 ------------------------Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vG 195 (250)
T PLN02591 140 ------------------------PTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVG 195 (250)
T ss_pred ------------------------CCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEe
Confidence 11223455555555433333323 223344444 344 45888888889999999
Q ss_pred cCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 529 SGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 529 GGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
-||++.+|++++.+ .|+|||+|||++-
T Consensus 196 FGI~~~e~v~~~~~-~GADGvIVGSalV 222 (250)
T PLN02591 196 FGISKPEHAKQIAG-WGADGVIVGSAMV 222 (250)
T ss_pred CCCCCHHHHHHHHh-cCCCEEEECHHHH
Confidence 99999999999985 8999999999994
No 264
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.94 E-value=0.0002 Score=70.62 Aligned_cols=192 Identities=14% Similarity=0.189 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+.+.++...+.|.|.|.+===++. ......++++++++. .+|+.+= |....+ ..
T Consensus 15 ~~~~~~~~~~~~gtdai~vGGS~~v-----t~~~~~~~v~~ik~~-~lPvilfp~~~~~i------------------~~ 70 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIGGSQGV-----TYEKTDTLIEALRRY-GLPIILFPSNPTNV------------------SR 70 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEcCCCcc-----cHHHHHHHHHHHhcc-CCCEEEeCCCcccc------------------Cc
Confidence 5668999999999998876322221 113345577888764 4999753 444433 24
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCC--CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN--QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
+||.+.+=|..=.++++|+- ..-.+++..|+. ..++. .+|+. . ++++
T Consensus 71 ~aDa~l~~svlNs~~~~~ii-------g~~~~~~~~~~~~~~e~ip-----~gYiv------------~--~~~~----- 119 (223)
T TIGR01768 71 DADALFFPSVLNSDDPYWII-------GAQIEAAPKFKKIGEEIIP-----EGYII------------V--NPGG----- 119 (223)
T ss_pred CCCEEEEEEeecCCCchHHH-------hHHHHHHHHHhhhcceecc-----eEEEE------------E--CCCc-----
Confidence 68877775544444455531 111222333321 11111 11110 0 0000
Q ss_pred EEEEEcccccCCCCCHHHH---HHHHHH-cCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHH
Q 045794 465 YQCTVNGGREGRPIGAYEL---AKAVED-LGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~---~~~~~~-~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~ 539 (578)
.+.--+..+..+.+..++ +....+ +|. .++|...+ .|.....+.+.++++++.+ ++|++++|||++.+++++
T Consensus 120 -~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~-~~vYlE~g-s~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~ 196 (223)
T TIGR01768 120 -AAARVTKAKPIPYDKEDLAAYAAMAEEMLGM-PIIYLEAG-SGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKARE 196 (223)
T ss_pred -ceeecccccccCCCcHHHHHHHHHHHHHcCC-cEEEEEec-CCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHH
Confidence 111011111111232332 222333 344 46666543 2334456899999999988 899999999999999999
Q ss_pred HHHhcCchHHhhhhhhccC
Q 045794 540 VFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~~ 558 (578)
+++ .|||+|++||+++..
T Consensus 197 l~~-aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 197 MAE-AGADTIVTGNVIEED 214 (223)
T ss_pred HHH-cCCCEEEECcHHhhC
Confidence 995 899999999999976
No 265
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.90 E-value=3.7e-05 Score=62.06 Aligned_cols=71 Identities=30% Similarity=0.436 Sum_probs=53.1
Q ss_pred HHHHHHHHHCCCeEEEeCCcc-------CCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHH
Q 045794 61 RSVRNAIRHLGFGIKDVQTPE-------DILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLL 133 (578)
Q Consensus 61 ~~i~~~L~~~Gv~v~~v~~~~-------dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlL 133 (578)
..+.+.+++.++++.+++... ...++|++|+|||+....... ......+++.+..+.++|++|+|.|+|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA--WDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred ecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhc--cCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 467788999998888876532 267899999999876544432 11245677888888899999999999874
No 266
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=97.90 E-value=2.2e-05 Score=74.81 Aligned_cols=200 Identities=18% Similarity=0.189 Sum_probs=123.2
Q ss_pred HHHHHHHHcCCCeEEEEecc----cCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 311 ELARQYYKEGADEISFLNIT----GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~----~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
|.|+..++.||..++..+-- +.+ +...+.++..+|++|.+.+.+|+..---|..+-+ ++-|-+.
T Consensus 32 eQA~iAE~aGACaVmalervPadiR~~-GgV~RMsDP~mIKei~~aVsiPVMAk~RiGHFVE-----------AQIlE~l 99 (296)
T KOG1606|consen 32 EQARIAEEAGACAVMALERVPADIRAQ-GGVARMSDPRMIKEIKNAVSIPVMAKVRIGHFVE-----------AQILEAL 99 (296)
T ss_pred HHHHHHHhcCcceEeeeccCCHhHHhc-CCeeecCCHHHHHHHHHhccchhhhhhhhhhhhH-----------HHHHHHh
Confidence 78999999999999887621 122 3356788999999999999999999888888854 6777778
Q ss_pred Ccceeecch----hhhccc-------hhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccC
Q 045794 387 GADKISIGS----DAVYAA-------EDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDL 455 (578)
Q Consensus 387 Ga~~vv~gt----~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~ 455 (578)
|+|.|--.- +-..+. -.|+| |.+..-|.|+.|.+ | .
T Consensus 100 ~vDYiDESEvlt~AD~~hhI~KhnFkvPFvC-G~rdlGEALRRI~E--G--A---------------------------- 146 (296)
T KOG1606|consen 100 GVDYIDESEVLTPADWDHHIEKHNFKVPFVC-GCRDLGEALRRIRE--G--A---------------------------- 146 (296)
T ss_pred ccCccchhhhcccccccchhhhhcCcCceee-ccccHHHHHHHHhh--c--h----------------------------
Confidence 898764321 111100 00222 11111122222221 1 0
Q ss_pred CCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC-----CCCCHHHHHHHHhhCCCcE--EEe
Q 045794 456 GPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG-----KGFDMDLIKLISDAVSIPV--IAS 528 (578)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~-----~G~d~~li~~l~~~~~ipV--Ias 528 (578)
-.+.++|-. .++ ++.|..+...+..-.-=.+...+.|.-. --..++|+++..+.-.+|| +++
T Consensus 147 ---------AMIRtkGea-gTG-~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~GrlPVV~FAa 215 (296)
T KOG1606|consen 147 ---------AMIRTKGEA-GTG-DVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQLGRLPVVNFAA 215 (296)
T ss_pred ---------hhheecccc-CCC-cHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHcCCCceEEecc
Confidence 133444422 122 4455555544432111111222222111 1134678888888778898 799
Q ss_pred cCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHH
Q 045794 529 SGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKE 567 (578)
Q Consensus 529 GGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~ 567 (578)
||+.++.|...+.+ +||+||.+||.++.+.-+.+.++.
T Consensus 216 GGvaTPADAALmMQ-LGCdGVFVGSgiFks~dP~k~a~a 253 (296)
T KOG1606|consen 216 GGVATPADAALMMQ-LGCDGVFVGSGIFKSGDPVKRARA 253 (296)
T ss_pred cCcCChhHHHHHHH-cCCCeEEeccccccCCCHHHHHHH
Confidence 99999999999985 999999999999888777766554
No 267
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.86 E-value=2.2e-05 Score=69.18 Aligned_cols=72 Identities=24% Similarity=0.423 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHCCCeEEEeCCcc----CC-CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHH
Q 045794 59 NVRSVRNAIRHLGFGIKDVQTPE----DI-LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLL 133 (578)
Q Consensus 59 ~~~~i~~~L~~~Gv~v~~v~~~~----dl-~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlL 133 (578)
...++.+.|+..- .+..+...+ .+ .++|.||+|| |.+.+.+..+...+ .+.|++++++++|+||||+|.-+-
T Consensus 14 ~~~~~~~~L~~~~-~v~~~~~~~I~~~~~~~~ad~lVlPG-Ga~~~~~~~L~~~g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 14 SLKHLAELLRLYL-AVSTVTADELAVGPWESKTALLVVPG-GADLPYCRALNGKG-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred HHHHHHHHHhhcc-ceeeecHHHHhcCchhhCCCEEEECC-CChHHHHHHHHhhC-cHHHHHHHHCCCcEEEEecCccce
Confidence 3344555555432 444444321 12 4899999999 77777888887667 889999999999999999998553
No 268
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=97.86 E-value=0.00096 Score=64.88 Aligned_cols=175 Identities=22% Similarity=0.223 Sum_probs=105.1
Q ss_pred HHHHHHHHcCCCeEEEEe-cccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChH------HHHHHH
Q 045794 311 ELARQYYKEGADEISFLN-ITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSL------EVASEY 383 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~D-l~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~------~~~~~~ 383 (578)
+-|..-.+.||++|-+.. |.- +| -.+...+++.+.+...+||.+ =||--. -.|.|+.. ++++.+
T Consensus 11 ~~a~~A~~~GAdRiELc~~l~~--GG---lTPS~g~i~~~~~~~~ipv~v--MIRpr~--gdF~Ys~~E~~~M~~dI~~~ 81 (201)
T PF03932_consen 11 EDALAAEAGGADRIELCSNLEV--GG---LTPSLGLIRQAREAVDIPVHV--MIRPRG--GDFVYSDEEIEIMKEDIRML 81 (201)
T ss_dssp HHHHHHHHTT-SEEEEEBTGGG--T----B---HHHHHHHHHHTTSEEEE--E--SSS--S-S---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCCccC--CC---cCcCHHHHHHHHhhcCCceEE--EECCCC--CCccCCHHHHHHHHHHHHHH
Confidence 445555789999999975 321 22 267899999999988999887 455432 13777764 468888
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.++|++.+|+|...-.. ..+.+.++++.+.-++-.+++ =|.+|.
T Consensus 82 ~~~GadG~VfG~L~~dg---------~iD~~~~~~Li~~a~~~~~tF-------------------HRAfD~-------- 125 (201)
T PF03932_consen 82 RELGADGFVFGALTEDG---------EIDEEALEELIEAAGGMPVTF-------------------HRAFDE-------- 125 (201)
T ss_dssp HHTT-SEEEE--BETTS---------SB-HHHHHHHHHHHTTSEEEE--------------------GGGGG--------
T ss_pred HHcCCCeeEEEeECCCC---------CcCHHHHHHHHHhcCCCeEEE-------------------eCcHHH--------
Confidence 89999999999644332 345677777776544333433 012332
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDA--VSIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~--~~ipVIasGGi~s~eDi~~l~ 541 (578)
. .++.+.++.+.++|+++|+-.. ....... +++.++++.+. -.+.|+++|||+. +.+..+.
T Consensus 126 ------------~-~d~~~al~~L~~lG~~rVLTSG-g~~~a~~--g~~~L~~lv~~a~~~i~Im~GgGv~~-~nv~~l~ 188 (201)
T PF03932_consen 126 ------------V-PDPEEALEQLIELGFDRVLTSG-GAPTALE--GIENLKELVEQAKGRIEIMPGGGVRA-ENVPELV 188 (201)
T ss_dssp ------------S-STHHHHHHHHHHHT-SEEEEST-TSSSTTT--CHHHHHHHHHHHTTSSEEEEESS--T-TTHHHHH
T ss_pred ------------h-CCHHHHHHHHHhcCCCEEECCC-CCCCHHH--HHHHHHHHHHHcCCCcEEEecCCCCH-HHHHHHH
Confidence 1 2578899999999999988443 2222333 46777777554 3688999999954 7899988
Q ss_pred HhcCch
Q 045794 542 RKTNAS 547 (578)
Q Consensus 542 ~~~G~~ 547 (578)
+++|+.
T Consensus 189 ~~tg~~ 194 (201)
T PF03932_consen 189 EETGVR 194 (201)
T ss_dssp HHHT-S
T ss_pred HhhCCe
Confidence 767765
No 269
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=97.85 E-value=0.00024 Score=76.21 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCC---------CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHh
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDG---------QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAAL 550 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG---------~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~ 550 (578)
..++++.+++.|++.|-++.-+.+. ...|..++..+.+++.+++|||++||+.+++++.++++..+||.|+
T Consensus 254 ~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~ 333 (382)
T cd02931 254 GLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMIS 333 (382)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeee
Confidence 4578999999999999887543221 1234456788899999999999999999999999999867799999
Q ss_pred hhhhhccCCCCHHHHH
Q 045794 551 AAGIFHRKEVPIQSVK 566 (578)
Q Consensus 551 vgsa~~~~~~~~~~~~ 566 (578)
+|+++...+.-+..++
T Consensus 334 ~gR~~ladP~l~~k~~ 349 (382)
T cd02931 334 LGRPLLADPDVVNKIR 349 (382)
T ss_pred echHhHhCccHHHHHH
Confidence 9999998887666554
No 270
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.85 E-value=0.00032 Score=74.55 Aligned_cols=88 Identities=23% Similarity=0.114 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHcCCcEEEEeccC---C---CCCC--CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHh
Q 045794 479 GAYELAKAVEDLGAGEILLNCID---C---DGQG--KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAAL 550 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~---~---dG~~--~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~ 550 (578)
+..++++.++++|++.|-++.-. + .... .+...+..+++++.+++||+++|++.+++++.++++..++|.|+
T Consensus 225 e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~ 304 (353)
T cd02930 225 EVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVS 304 (353)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhH
Confidence 35789999999999988874211 1 1111 22346778899999999999999999999999999866799999
Q ss_pred hhhhhccCCCCHHHHH
Q 045794 551 AAGIFHRKEVPIQSVK 566 (578)
Q Consensus 551 vgsa~~~~~~~~~~~~ 566 (578)
+|+++...+.-+..++
T Consensus 305 ~gR~~l~dP~~~~k~~ 320 (353)
T cd02930 305 MARPFLADPDFVAKAA 320 (353)
T ss_pred hhHHHHHCccHHHHHH
Confidence 9999998887665554
No 271
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.83 E-value=0.0013 Score=64.42 Aligned_cols=206 Identities=19% Similarity=0.260 Sum_probs=132.2
Q ss_pred HHHHHHHHHHcCCCeEEEEecccC---CC-CCCCCchhHHHHHHHhhhccccEEEeCCccccc-cCCCCccChHHHHHHH
Q 045794 309 PVELARQYYKEGADEISFLNITGF---RD-FPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFT-DANGRHYSSLEVASEY 383 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~---~~-~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~-d~~~~~~~~~~~~~~~ 383 (578)
.+.=|+.|++-|+|.|++=+--.+ ++ ++..-..+..+++++.+++.+|+ ||+=+. | ....+.-.
T Consensus 36 A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPv----GvNVLrNd-------~vaA~~IA 104 (263)
T COG0434 36 AVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPV----GVNVLRND-------AVAALAIA 104 (263)
T ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccc----eeeeeccc-------cHHHHHHH
Confidence 344588899999999998654211 11 11112345566788888889998 776543 2 12223334
Q ss_pred HHcCcceeecch---hhhccchhhhhccccCCchHHHHHHHhCCC-CeEEEEEeccccccCCCCccccceeeeccCCCCC
Q 045794 384 FRSGADKISIGS---DAVYAAEDYLKTGVKTGKSSLEQISRVYGN-QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNG 459 (578)
Q Consensus 384 l~~Ga~~vv~gt---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (578)
...||+.|=++. +.+. +..++.. +-..+-+...+.|+ -+|.+-+++|...-
T Consensus 105 ~a~gA~FIRVN~~tg~~~t-dqGiieg----~A~e~~r~r~~L~~~v~vlADv~VKHa~~-------------------- 159 (263)
T COG0434 105 YAVGADFIRVNVLTGAYAT-DQGIIEG----NAAELARYRARLGSRVKVLADVHVKHAVH-------------------- 159 (263)
T ss_pred HhcCCCEEEEEeeeceEec-ccceecc----hHHHHHHHHHhccCCcEEEeecchhcccc--------------------
Confidence 456888665432 1122 2233321 11122333455662 34555555555321
Q ss_pred CCcceEEEEEcccccCCCCCHHHHHHH-HHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q 045794 460 EEYAWYQCTVNGGREGRPIGAYELAKA-VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFS 538 (578)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~e~~~~-~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~ 538 (578)
....++.+.++. ++..+++.+|+|.- .|.+.+|.+.++..++.++.||+++-|+ +++-+.
T Consensus 160 ---------------l~~~~~~~~v~dtver~~aDaVI~tG~---~TG~~~d~~el~~a~~~~~~pvlvGSGv-~~eN~~ 220 (263)
T COG0434 160 ---------------LGNRSLEEAVKDTVERGLADAVIVTGS---RTGSPPDLEELKLAKEAVDTPVLVGSGV-NPENIE 220 (263)
T ss_pred ---------------cCCcCHHHHHHHHHHccCCCEEEEecc---cCCCCCCHHHHHHHHhccCCCEEEecCC-CHHHHH
Confidence 113367888888 56666999999874 3566789999999999999999999999 788899
Q ss_pred HHHHhcCchHHhhhhhhccC-----CCCHHHHHHHHHh
Q 045794 539 DVFRKTNASAALAAGIFHRK-----EVPIQSVKEHLYK 571 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~-----~~~~~~~~~~l~~ 571 (578)
.+++ . +||+++||.+-.+ +++...++++.+.
T Consensus 221 ~~l~-~-adG~IvgT~lK~~G~~~n~VD~~Rv~~~v~~ 256 (263)
T COG0434 221 ELLK-I-ADGVIVGTSLKKGGVTWNPVDLERVRRFVEA 256 (263)
T ss_pred HHHH-H-cCceEEEEEEccCCEecCccCHHHHHHHHHH
Confidence 9986 4 9999999988543 6778877776653
No 272
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.83 E-value=0.0015 Score=64.86 Aligned_cols=192 Identities=14% Similarity=0.162 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhh-ccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSEN-VFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
+..+-++.+.+.|++++| +|+ |+..- .+-.--.++++.+++. +.+|+.+===+.+.+ .-++.+.+
T Consensus 17 ~l~~~i~~l~~~g~d~lH-iDimDG~FV--PN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~----------~~i~~~~~ 83 (223)
T PRK08745 17 RLGEEVDNVLKAGADWVH-FDVMDNHYV--PNLTIGPMVCQALRKHGITAPIDVHLMVEPVD----------RIVPDFAD 83 (223)
T ss_pred HHHHHHHHHHHcCCCEEE-EecccCccC--CCcccCHHHHHHHHhhCCCCCEEEEeccCCHH----------HHHHHHHH
Confidence 333556667778999999 565 44211 1112225678888876 466755433344554 35888899
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.|.+=.++-.+.. ..++.+ ++.|- +.-++|...
T Consensus 84 ~gad~I~~H~Ea~~~~~-----------~~l~~I-r~~g~-k~GlalnP~------------------------------ 120 (223)
T PRK08745 84 AGATTISFHPEASRHVH-----------RTIQLI-KSHGC-QAGLVLNPA------------------------------ 120 (223)
T ss_pred hCCCEEEEcccCcccHH-----------HHHHHH-HHCCC-ceeEEeCCC------------------------------
Confidence 99999999877654321 445555 44563 445555311
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHH---HHHHHhh-----CCCcEEEecCCCCHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDL---IKLISDA-----VSIPVIASSGAGAVEHF 537 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~l---i~~l~~~-----~~ipVIasGGi~s~eDi 537 (578)
++++.++.+.+. ++.|+++.+.-....+.+..+. ++++++. .++.+-+-||| +.+.+
T Consensus 121 -------------T~~~~i~~~l~~-vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI-~~eti 185 (223)
T PRK08745 121 -------------TPVDILDWVLPE-LDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGV-KADNI 185 (223)
T ss_pred -------------CCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHH
Confidence 335566666664 8999999998876777775443 3333332 14668999999 57899
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
.++.+ .|++.+++||++... -++.+..+.+++.
T Consensus 186 ~~l~~-aGaDi~V~GSaiF~~-~d~~~~~~~lr~~ 218 (223)
T PRK08745 186 GAIAA-AGADTFVAGSAIFNA-PDYAQVIAQMRAA 218 (223)
T ss_pred HHHHH-cCCCEEEEChhhhCC-CCHHHHHHHHHHH
Confidence 99885 999999999998753 3566666666543
No 273
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=97.82 E-value=0.00011 Score=77.27 Aligned_cols=91 Identities=22% Similarity=0.287 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCC-CCC--HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGK-GFD--MDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~-G~d--~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+.++++.+.|+|.|++.....-|+.. ... +.|+.++++.+++|||++|||.+.+++..++. +||+||.+|+.|.-
T Consensus 146 ~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~-lGA~gV~~GTrFl~ 224 (330)
T PF03060_consen 146 VREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAALA-LGADGVQMGTRFLA 224 (330)
T ss_dssp HHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHH-CT-SEEEESHHHHT
T ss_pred HHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHH-cCCCEeecCCeEEe
Confidence 667889999999999999988877665 333 68889999999999999999999999999996 99999999998864
Q ss_pred CCCC--HHHHHHHHHhC
Q 045794 558 KEVP--IQSVKEHLYKE 572 (578)
Q Consensus 558 ~~~~--~~~~~~~l~~~ 572 (578)
..-. -+..|+.+-+.
T Consensus 225 t~Es~~~~~~K~~l~~a 241 (330)
T PF03060_consen 225 TEESGASDAYKQALVDA 241 (330)
T ss_dssp STTS-S-HHHHHHHHHG
T ss_pred cccccChHHHHHHHHhC
Confidence 3322 35666666544
No 274
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.81 E-value=0.00046 Score=73.71 Aligned_cols=151 Identities=19% Similarity=0.157 Sum_probs=103.6
Q ss_pred HHHHHHHhhh-ccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 343 LQVLRLTSEN-VFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 343 ~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
.++|+++++. .+.++.+.==+.+... .. ++.+.++||+.+.+-..+-.. . +...-+..+
T Consensus 214 ~~iVk~Lr~~~~~~~I~~DLK~~Di~~--------~v-v~~~a~aGAD~vTVH~ea~~~---t--------i~~ai~~ak 273 (391)
T PRK13307 214 LEVISKIREVRPDAFIVADLKTLDTGN--------LE-ARMAADATADAVVISGLAPIS---T--------IEKAIHEAQ 273 (391)
T ss_pred HHHHHHHHHhCCCCeEEEEecccChhh--------HH-HHHHHhcCCCEEEEeccCCHH---H--------HHHHHHHHH
Confidence 5778888876 3566777656666543 22 778899999999996544321 1 122334456
Q ss_pred hCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEec-c
Q 045794 422 VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNC-I 500 (578)
Q Consensus 422 ~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~td-i 500 (578)
++| +.+.+|+-+. -++.+.++.+ ..+++.++++. +
T Consensus 274 k~G---ikvgVD~lnp----------------------------------------~tp~e~i~~l-~~~vD~Vllht~v 309 (391)
T PRK13307 274 KTG---IYSILDMLNV----------------------------------------EDPVKLLESL-KVKPDVVELHRGI 309 (391)
T ss_pred HcC---CEEEEEEcCC----------------------------------------CCHHHHHHHh-hCCCCEEEEcccc
Confidence 677 3445553321 1356777777 77899999885 6
Q ss_pred CCCCCCCCCCHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCC
Q 045794 501 DCDGQGKGFDMDLIKLISDA-VSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 501 ~~dG~~~G~d~~li~~l~~~-~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~ 561 (578)
+.. .+.+-++.++++++. .+++|.+.|||+ .+++.++.+ .|++.+++||++...+-.
T Consensus 310 dp~--~~~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~~-aGADivVVGsaIf~a~Dp 367 (391)
T PRK13307 310 DEE--GTEHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEALK-AGADILVVGRAITKSKDV 367 (391)
T ss_pred CCC--cccchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHHH-cCCCEEEEeHHHhCCCCH
Confidence 655 335567778877764 468999999997 889999985 999999999999865543
No 275
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.81 E-value=5e-05 Score=73.53 Aligned_cols=197 Identities=19% Similarity=0.237 Sum_probs=121.3
Q ss_pred HHHHHHHHcCCCeEEEE-----ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 311 ELARQYYKEGADEISFL-----NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~-----Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
|.|+.-++.||-.++.+ |+-++ +...|..+..+|++|-+.+.+|+..---|..+-+ ++-|-.
T Consensus 31 EQA~IAE~aGAvAVMaLervPaDiR~a--GGVaRMaDp~~i~eim~aVsIPVMAKvRIGH~~E-----------A~iLea 97 (296)
T COG0214 31 EQARIAEEAGAVAVMALERVPADIRAA--GGVARMADPKMIEEIMDAVSIPVMAKVRIGHFVE-----------AQILEA 97 (296)
T ss_pred HHHHHHHhcCceeEeehhhCcHHHHhc--cCccccCCHHHHHHHHHhcccceeeeeecchhHH-----------HHHHHH
Confidence 88999999999888775 44443 3456788999999999999999999888888754 777778
Q ss_pred cCcceeecchhhhc-cch-----------hhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeec
Q 045794 386 SGADKISIGSDAVY-AAE-----------DYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVT 453 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~-~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~ 453 (578)
.|+|.|--. ..++ .++ .|+| |.+...|.++.+.+ | .-
T Consensus 98 lgVD~IDES-EVLTPAD~~~Hi~K~~FtVPFVc-GarnLgEAlRRI~E--G--Aa------------------------- 146 (296)
T COG0214 98 LGVDMIDES-EVLTPADEEFHINKWKFTVPFVC-GARNLGEALRRISE--G--AA------------------------- 146 (296)
T ss_pred hCCCccccc-cccCCCchhhhcchhhcccceec-CcCcHHHHHHHHhh--h--HH-------------------------
Confidence 899965432 1121 000 1333 22222233333322 1 10
Q ss_pred cCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC-----CCCCCCHHHHHHHHhhCCCcE--E
Q 045794 454 DLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG-----QGKGFDMDLIKLISDAVSIPV--I 526 (578)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG-----~~~G~d~~li~~l~~~~~ipV--I 526 (578)
.+.++|-- .++ ++.+..+......-.---+...+.|. ..-+..+++++++++.-.+|| +
T Consensus 147 ------------MIRTKGEa-GTG-nv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~grLPVvnF 212 (296)
T COG0214 147 ------------MIRTKGEA-GTG-NVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKLGRLPVVNF 212 (296)
T ss_pred ------------HHhcCCCC-CCC-cHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHhCCCCeEee
Confidence 22233311 112 34554444433211000011122111 112345789999988778888 7
Q ss_pred EecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 527 asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
++|||.++.|..-+.+ +|||||.|||.++....+-+..+
T Consensus 213 AAGGvATPADAALMM~-LGadGVFVGSGIFKS~~P~~~A~ 251 (296)
T COG0214 213 AAGGVATPADAALMMQ-LGADGVFVGSGIFKSSNPEKRAK 251 (296)
T ss_pred cccCcCChhHHHHHHH-hCCCeEEecccccCCCCHHHHHH
Confidence 9999999999999985 99999999999987665544443
No 276
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.79 E-value=0.00047 Score=69.38 Aligned_cols=186 Identities=15% Similarity=0.187 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHcCCCeEEEE----ec--c---------cCCCCCCCCchhHHHHHHHhhh-ccccEEEeCCccccccCCC
Q 045794 308 KPVELARQYYKEGADEISFL----NI--T---------GFRDFPLGDLPMLQVLRLTSEN-VFVPLTVGGGIRDFTDANG 371 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~----Dl--~---------~~~~~~~~~~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~ 371 (578)
.-+++++.+.+.|+|-|=+= |- | .+......-...+++++++.++ ..+|+.+=+-.+-+
T Consensus 32 ~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi----- 106 (265)
T COG0159 32 TSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPI----- 106 (265)
T ss_pred HHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHH-----
Confidence 45678888888999954430 11 0 0111112235678888888854 67888654433321
Q ss_pred CccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceee
Q 045794 372 RHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVR 451 (578)
Q Consensus 372 ~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~ 451 (578)
+.|.-.+=++++-++|+|.+++--.-.+.. +.+.+.+++||=+-|.+ +-
T Consensus 107 ~~~Gie~F~~~~~~~GvdGlivpDLP~ee~------------~~~~~~~~~~gi~~I~l-va------------------ 155 (265)
T COG0159 107 FNYGIEKFLRRAKEAGVDGLLVPDLPPEES------------DELLKAAEKHGIDPIFL-VA------------------ 155 (265)
T ss_pred HHhhHHHHHHHHHHcCCCEEEeCCCChHHH------------HHHHHHHHHcCCcEEEE-eC------------------
Confidence 112222227788899999998854444422 44567778888554333 11
Q ss_pred eccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc-CCCCCCCCC--C-HHHHHHHHhhCCCcEEE
Q 045794 452 VTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI-DCDGQGKGF--D-MDLIKLISDAVSIPVIA 527 (578)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi-~~dG~~~G~--d-~~li~~l~~~~~ipVIa 527 (578)
..+..+.++++.+..-+.+.+.++ -..|..... + -++++++++.+++||.+
T Consensus 156 -------------------------Ptt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~v 210 (265)
T COG0159 156 -------------------------PTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLV 210 (265)
T ss_pred -------------------------CCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEE
Confidence 223456777777776566666665 334444431 2 36889999988999999
Q ss_pred ecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 528 SSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 528 sGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
+=||+++++++++.+ . +|||+||||+-
T Consensus 211 GFGIs~~e~~~~v~~-~-ADGVIVGSAiV 237 (265)
T COG0159 211 GFGISSPEQAAQVAE-A-ADGVIVGSAIV 237 (265)
T ss_pred ecCcCCHHHHHHHHH-h-CCeEEEcHHHH
Confidence 999999999999996 6 99999999884
No 277
>PRK08005 epimerase; Validated
Probab=97.78 E-value=0.0013 Score=64.62 Aligned_cols=185 Identities=11% Similarity=0.068 Sum_probs=121.1
Q ss_pred HHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 310 VELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
.+.++.+.+.|++++| +|+ |+..- .+-.--.+.++.+++.+..|+.+===+.+.+ .-++.+.++||
T Consensus 16 ~~el~~l~~~g~d~lH-iDvMDG~FV--PN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~----------~~i~~~~~~ga 82 (210)
T PRK08005 16 AEALTALHDAPLGSLH-LDIEDTSFI--NNITFGMKTIQAVAQQTRHPLSFHLMVSSPQ----------RWLPWLAAIRP 82 (210)
T ss_pred HHHHHHHHHCCCCEEE-EeccCCCcC--CccccCHHHHHHHHhcCCCCeEEEeccCCHH----------HHHHHHHHhCC
Confidence 3456667778999999 565 44211 1112225678888877777765543455554 35888999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCT 468 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (578)
+.|.+=.++..+.. ..++.+ ++.|. +.-++|...
T Consensus 83 d~It~H~Ea~~~~~-----------~~l~~I-k~~G~-k~GlAlnP~--------------------------------- 116 (210)
T PRK08005 83 GWIFIHAESVQNPS-----------EILADI-RAIGA-KAGLALNPA--------------------------------- 116 (210)
T ss_pred CEEEEcccCccCHH-----------HHHHHH-HHcCC-cEEEEECCC---------------------------------
Confidence 99999877654321 445555 44564 345555311
Q ss_pred EcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHh---hC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 469 VNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISD---AV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 469 ~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~---~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
++++.++.+.+. ++.|+++.+.-.-..+.+..+.++++++ .. ...+.+=||| +.+.+.++.+ .
T Consensus 117 ----------Tp~~~i~~~l~~-vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI-~~~~i~~l~~-a 183 (210)
T PRK08005 117 ----------TPLLPYRYLALQ-LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGI-TLRAARLLAA-A 183 (210)
T ss_pred ----------CCHHHHHHHHHh-cCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCC-CHHHHHHHHH-C
Confidence 234555555553 8999999998776677776655555543 32 2469999999 5788999885 9
Q ss_pred CchHHhhhhhhccCCCCHHHHHH
Q 045794 545 NASAALAAGIFHRKEVPIQSVKE 567 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~~~~~~~~ 567 (578)
||+.+++||++...+ ++.+..+
T Consensus 184 Gad~~V~GsaiF~~~-d~~~~~~ 205 (210)
T PRK08005 184 GAQHLVIGRALFTTA-NYDVTLS 205 (210)
T ss_pred CCCEEEEChHhhCCC-CHHHHHH
Confidence 999999999987543 3444433
No 278
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.78 E-value=0.00044 Score=73.48 Aligned_cols=87 Identities=9% Similarity=0.145 Sum_probs=67.8
Q ss_pred HHHHHHHHHHcCCcEEEEeccC-CCCCCCCCCHHHHHHHHhhCCCcEEEecCC------------------CCHHHHHHH
Q 045794 480 AYELAKAVEDLGAGEILLNCID-CDGQGKGFDMDLIKLISDAVSIPVIASSGA------------------GAVEHFSDV 540 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~-~dG~~~G~d~~li~~l~~~~~ipVIasGGi------------------~s~eDi~~l 540 (578)
..++++.+++.|++.|=+..-. ......|.++++.+.+++.+++||++.|++ .+++++.++
T Consensus 237 ~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~ 316 (361)
T cd04747 237 LEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLER 316 (361)
T ss_pred HHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHH
Confidence 4567888999999886543321 122445667888888999899999999999 599999999
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
++..+||.|++|+++...+.-+..++
T Consensus 317 l~~g~~D~V~~gR~~iadP~~~~k~~ 342 (361)
T cd04747 317 LERGEFDLVAVGRALLSDPAWVAKVR 342 (361)
T ss_pred HHCCCCCeehhhHHHHhCcHHHHHHH
Confidence 98667999999999998886555543
No 279
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.77 E-value=0.00038 Score=74.03 Aligned_cols=87 Identities=13% Similarity=0.202 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCC--CCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhh
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQ--GKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAG 553 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~--~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgs 553 (578)
+.+++++.+++.|++.|-++.-..... ..+. +.+.++.+++.+ ++|||++||+.+++++.++++. |||.|++|+
T Consensus 236 e~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~-gaD~V~~gR 314 (353)
T cd04735 236 DTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALET-GADLVAIGR 314 (353)
T ss_pred HHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHc-CCChHHHhH
Confidence 357889999999999998875333221 1222 456667777766 7999999999999999999974 999999999
Q ss_pred hhccCCCCHHHHH
Q 045794 554 IFHRKEVPIQSVK 566 (578)
Q Consensus 554 a~~~~~~~~~~~~ 566 (578)
++...+.-+..++
T Consensus 315 ~liadPdl~~k~~ 327 (353)
T cd04735 315 GLLVDPDWVEKIK 327 (353)
T ss_pred HHHhCccHHHHHH
Confidence 9988776555444
No 280
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=97.76 E-value=8.3e-05 Score=78.17 Aligned_cols=92 Identities=22% Similarity=0.303 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCC----CC-HHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCchHHhhhh
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKG----FD-MDLIKLISDAVS-IPVIASSGAGAVEHFSDVFRKTNASAALAAG 553 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G----~d-~~li~~l~~~~~-ipVIasGGi~s~eDi~~l~~~~G~~gv~vgs 553 (578)
...+++++++.|++.+|...-..-|+..+ +. +.|+.++.+.++ +|||++|||.+.+++..++. +||+||-+||
T Consensus 136 ~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAla-lGA~gVq~GT 214 (336)
T COG2070 136 TVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALA-LGADGVQMGT 214 (336)
T ss_pred CHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHH-hccHHHHhhh
Confidence 37899999999999999999988877552 32 478899999999 99999999999999999996 9999999999
Q ss_pred hhccCCCC--HHHHHHHHHhC
Q 045794 554 IFHRKEVP--IQSVKEHLYKE 572 (578)
Q Consensus 554 a~~~~~~~--~~~~~~~l~~~ 572 (578)
.|.-..-. -+..|+.|.+.
T Consensus 215 ~Fl~t~Ea~a~~~~K~~l~~a 235 (336)
T COG2070 215 RFLATKEADASDAYKQALLQA 235 (336)
T ss_pred hhhcccccCCCHHHHHHHhcc
Confidence 99743321 25666666544
No 281
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=97.76 E-value=0.00084 Score=74.78 Aligned_cols=174 Identities=16% Similarity=0.231 Sum_probs=115.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH---HhhhccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL---TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~---i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
.+..+.++...+.|++.|++=+=+.. .....+.+++ ++++.++++.+ ++. ++-.
T Consensus 307 ~~~~~~l~~~l~~Gv~~vqlR~k~~~------~~~~~~~a~~l~~~~~~~~~~lii----nd~-------------~~lA 363 (502)
T PLN02898 307 RSTVDAVRAAIEGGATIVQLREKEAE------TREFIEEAKACLAICRSYGVPLLI----NDR-------------VDVA 363 (502)
T ss_pred chHHHHHHHHHHcCCCEEEEccCCCC------HHHHHHHHHHHHHHHHHhCCEEEE----cCh-------------HHHH
Confidence 35677888888999998887543221 1122334444 55556788875 332 5567
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
++.|++.|=+|-..+. ..++.+.+|.+++ +++.+.
T Consensus 364 ~~~~adGvHl~~~d~~----------------~~~~r~~~~~~~~-iG~S~h---------------------------- 398 (502)
T PLN02898 364 LACDADGVHLGQSDMP----------------VRLARSLLGPGKI-IGVSCK---------------------------- 398 (502)
T ss_pred HhcCCCEEEeChHhcC----------------HHHHHHhcCCCCE-EEEeCC----------------------------
Confidence 7789999988854332 2344555665543 444321
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc----CCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI----DCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi----~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~ 539 (578)
++ +-+.++.+.|++.+.+-.+ ++.+ ....+++.++.+.+...+||++-||| +.+++.+
T Consensus 399 ---------------~~-~e~~~a~~~gadyi~~gpif~t~tk~~-~~~~g~~~~~~~~~~~~~Pv~aiGGI-~~~~~~~ 460 (502)
T PLN02898 399 ---------------TP-EQAEQAWKDGADYIGCGGVFPTNTKAN-NKTIGLDGLREVCEASKLPVVAIGGI-SASNAAS 460 (502)
T ss_pred ---------------CH-HHHHHHhhcCCCEEEECCeecCCCCCC-CCCCCHHHHHHHHHcCCCCEEEECCC-CHHHHHH
Confidence 22 3456777889999974333 3332 34457899999988889999999999 5899999
Q ss_pred HHHhcCch---HHhhhhhhccCCCCHHHHHH
Q 045794 540 VFRKTNAS---AALAAGIFHRKEVPIQSVKE 567 (578)
Q Consensus 540 l~~~~G~~---gv~vgsa~~~~~~~~~~~~~ 567 (578)
+++ .|++ ||.+++++...+-....+++
T Consensus 461 ~~~-~G~~~~~gvav~~~i~~~~d~~~~~~~ 490 (502)
T PLN02898 461 VME-SGAPNLKGVAVVSALFDQEDVLKATRK 490 (502)
T ss_pred HHH-cCCCcCceEEEEeHHhcCCCHHHHHHH
Confidence 985 8999 99999999765544444443
No 282
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=97.76 E-value=0.00049 Score=73.46 Aligned_cols=95 Identities=7% Similarity=-0.006 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCC---------------------CCCCCCCH-----HHHHHHHhhC------CCcEE
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCD---------------------GQGKGFDM-----DLIKLISDAV------SIPVI 526 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~d---------------------G~~~G~d~-----~li~~l~~~~------~ipVI 526 (578)
++.++++.+.+.|++.|++++.... |-+.|+-+ ..+.++++.+ ++|||
T Consensus 195 ~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIi 274 (385)
T PLN02495 195 DITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLS 274 (385)
T ss_pred hHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEE
Confidence 4788999999999999997653221 11233322 2233344444 48999
Q ss_pred EecCCCCHHHHHHHHHhcCchHHhhhhhhccC-CCC----HHHHHHHHHhCCC
Q 045794 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFHRK-EVP----IQSVKEHLYKEGI 574 (578)
Q Consensus 527 asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~-~~~----~~~~~~~l~~~~i 574 (578)
+.|||.+.+|+.+.+. +||+.|.++|+++.. +-. .+++.++|.++|+
T Consensus 275 GvGGI~s~~Da~e~i~-aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m~~~G~ 326 (385)
T PLN02495 275 GIGGVETGGDAAEFIL-LGADTVQVCTGVMMHGYPLVKNLCAELQDFMKKHNF 326 (385)
T ss_pred EECCCCCHHHHHHHHH-hCCCceeEeeeeeecCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999995 999999999998654 433 4556677777775
No 283
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=97.73 E-value=6.6e-05 Score=74.62 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+..++++.+.+.|++.|++....... ......+++.++++++.+++||.+.|||++.+| ++++++.
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~~~~~--~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d-----------~~~~l~~ 204 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGRTREQ--RYSGPADWDYIAEIKEAVSIPVIANGDIFSLED-----------ALRCLEQ 204 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCCCHHH--cCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHH-----------HHHHHHh
Confidence 378899999999999999986654321 112245789999999989999999999999977 9999998
Q ss_pred -Ccceeecchhhhcc
Q 045794 387 -GADKISIGSDAVYA 400 (578)
Q Consensus 387 -Ga~~vv~gt~~~~~ 400 (578)
|||.|.+|+.++.+
T Consensus 205 ~gad~V~igr~~l~~ 219 (231)
T cd02801 205 TGVDGVMIGRGALGN 219 (231)
T ss_pred cCCCEEEEcHHhHhC
Confidence 89999999999985
No 284
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.70 E-value=7.4e-05 Score=73.08 Aligned_cols=81 Identities=23% Similarity=0.391 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
.-+++++++.|+..+--.. +--|+.+|+ |...++.+.+..++|||+-+||+++.|..++++ +|+|||+++|++....
T Consensus 134 ~v~akrL~d~GcaavMPlg-sPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AME-lG~daVLvNTAiA~A~ 211 (247)
T PF05690_consen 134 PVLAKRLEDAGCAAVMPLG-SPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAME-LGADAVLVNTAIAKAK 211 (247)
T ss_dssp HHHHHHHHHTT-SEBEEBS-SSTTT---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHH-TT-SEEEESHHHHTSS
T ss_pred HHHHHHHHHCCCCEEEecc-cccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH-cCCceeehhhHHhccC
Confidence 5689999999998776554 445889998 889999999989999999999999999999996 9999999999998766
Q ss_pred CCHH
Q 045794 560 VPIQ 563 (578)
Q Consensus 560 ~~~~ 563 (578)
.+..
T Consensus 212 dPv~ 215 (247)
T PF05690_consen 212 DPVA 215 (247)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 5544
No 285
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.68 E-value=0.00028 Score=82.49 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCCcEEEEecc-CCCC----CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhh
Q 045794 480 AYELAKAVEDLGAGEILLNCI-DCDG----QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi-~~dG----~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa 554 (578)
.+++++.+++.|++.|-++.- .... ...++..++.+++++.+++||+++|+|.+++++.+++++.+||.|++|+.
T Consensus 640 ~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~ 719 (765)
T PRK08255 640 AVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARP 719 (765)
T ss_pred HHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHH
Confidence 568999999999998887631 1110 01245567778899989999999999999999999998778999999999
Q ss_pred hccCC-CCHHHHH
Q 045794 555 FHRKE-VPIQSVK 566 (578)
Q Consensus 555 ~~~~~-~~~~~~~ 566 (578)
+..++ +.++.++
T Consensus 720 ~l~dP~~~~~~~~ 732 (765)
T PRK08255 720 HLADPAWTLHEAA 732 (765)
T ss_pred HHhCccHHHHHHH
Confidence 98888 5555444
No 286
>PLN02826 dihydroorotate dehydrogenase
Probab=97.68 E-value=0.00013 Score=78.60 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccC--------------CCCCCCCCC-----HHHHHHHHhhC--CCcEEEecCCCCHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCID--------------CDGQGKGFD-----MDLIKLISDAV--SIPVIASSGAGAVEHF 537 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~--------------~dG~~~G~d-----~~li~~l~~~~--~ipVIasGGi~s~eDi 537 (578)
++.++++.+.+.|++.|++++.. ..|-++|+- ++.++++.+.+ ++|||+.|||.+.+|+
T Consensus 277 di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da 356 (409)
T PLN02826 277 DLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDA 356 (409)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHH
Confidence 47889999999999999988732 123355543 57888888877 7999999999999999
Q ss_pred HHHHHhcCchHHhhhhhhcc-CCCCHHH----HHHHHHhCCC
Q 045794 538 SDVFRKTNASAALAAGIFHR-KEVPIQS----VKEHLYKEGI 574 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~-~~~~~~~----~~~~l~~~~i 574 (578)
.+.+. +||+.|.++|++.. |+..+.+ ++++|.+.|+
T Consensus 357 ~e~i~-AGAs~VQv~Ta~~~~Gp~~i~~I~~eL~~~l~~~G~ 397 (409)
T PLN02826 357 YKKIR-AGASLVQLYTAFAYEGPALIPRIKAELAACLERDGF 397 (409)
T ss_pred HHHHH-hCCCeeeecHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 99996 99999999999755 6655444 4555555564
No 287
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=97.68 E-value=0.00018 Score=76.19 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+.++.+.+.|++.|++..-..-....++ +++.+.++++.+ .+|||++|||++..|+.+++. +||++|++|+.+..
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLa-lGAd~V~igR~~l~ 317 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALA-SGADLVALGRPVIY 317 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 78899999999999987765544444555 689999998877 499999999999999999996 99999999998654
No 288
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.66 E-value=0.0009 Score=65.47 Aligned_cols=194 Identities=15% Similarity=0.200 Sum_probs=109.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..+.++|+...+.|.|.|+|==-++.. .....+++++|++.+++|+++= |....+ .
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt-----~~~~~~~v~~ik~~~~lPvilfP~~~~~i------------------s 84 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVT-----EENVDNVVEAIKERTDLPVILFPGSPSGI------------------S 84 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCccccc-----HHHHHHHHHHHHhhcCCCEEEecCChhcc------------------C
Confidence 577889999999999998873222221 1345788999998899999774 333332 2
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC-----eEEEEEeccccccCCCCccccceeeeccCCCCCC
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ-----AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGE 460 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (578)
-+||.+.+=|..=.+++.|+-+--..+ .....+++-+ =|++.-| +
T Consensus 85 ~~aDavff~svLNS~n~~~i~gaq~~~----a~~~~~~~~e~i~~gYiV~~p~-------------------------~- 134 (240)
T COG1646 85 PYADAVFFPSVLNSDNPYWIVGAQVEG----AKLVGKLGLEVIPEGYIVVNPD-------------------------G- 134 (240)
T ss_pred ccCCeEEEEEEecCCCcccccchhhhh----hHHHHhhhheecceEEEEECCC-------------------------C-
Confidence 256666554433223333331100000 1111223211 1222111 1
Q ss_pred CcceEEEEEcccccCCCCCHHHHH---HHHHHc-CCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHH
Q 045794 461 EYAWYQCTVNGGREGRPIGAYELA---KAVEDL-GAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVE 535 (578)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~e~~---~~~~~~-G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~e 535 (578)
++.--|.-+..+++-.+++ ...+++ |. .++|. ...|+...| ..+.++++.+.+ |+|++|||+|.|
T Consensus 135 -----~va~v~~A~~ip~~~~~iaa~y~la~~~~g~-~~~Yl--Eagsga~~Pv~~e~v~~v~~~~--~LivGGGIrs~E 204 (240)
T COG1646 135 -----TVAWVGKAKPIPLDKEDIAAYYALAEKYLGM-PVVYL--EAGSGAGDPVPVEMVSRVLSDT--PLIVGGGIRSPE 204 (240)
T ss_pred -----ceeeecccccCCCCcHHHHHHHHHHHHHhCC-eEEEE--EecCCCCCCcCHHHHHHhhccc--eEEEcCCcCCHH
Confidence 1211122222233333322 222222 22 34444 444555555 778888877655 999999999999
Q ss_pred HHHHHHHhcCchHHhhhhhhccCCCCHHH
Q 045794 536 HFSDVFRKTNASAALAAGIFHRKEVPIQS 564 (578)
Q Consensus 536 Di~~l~~~~G~~gv~vgsa~~~~~~~~~~ 564 (578)
..+++.+ .|||.+++|+++|+..-.+.+
T Consensus 205 ~A~~~a~-agAD~IVtG~iiee~~~~~~~ 232 (240)
T COG1646 205 QAREMAE-AGADTIVTGTIIEEDPDKALE 232 (240)
T ss_pred HHHHHHH-cCCCEEEECceeecCHHHHHH
Confidence 9999985 899999999999987733333
No 289
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.64 E-value=0.0001 Score=72.91 Aligned_cols=77 Identities=29% Similarity=0.342 Sum_probs=49.7
Q ss_pred CHHHHHHHHH-H---cCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 308 KPVELARQYY-K---EGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 308 ~p~~~a~~~~-~---~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+..++|..+. . .|.+ +.+++- +|+.+ .....+++...+..++|+.+||||||.|. +++
T Consensus 137 ~~~~iaa~~alA~~~~g~~-~iYLEaGSGa~~-----~v~~~v~~~~~~~~~~~LivGGGIrs~e~-----------A~~ 199 (230)
T PF01884_consen 137 DKPEIAAAAALAAEYLGMP-IIYLEAGSGAYG-----PVPEEVIAAVKKLSDIPLIVGGGIRSPEQ-----------ARE 199 (230)
T ss_dssp SHHHHHHHHHHHHHHTT-S-EEEEE--TTSSS------HHHHHHHHHHHSSSSEEEEESS--SHHH-----------HHH
T ss_pred CcHHHHHHHHHHHHHhCCC-EEEEEeCCCCCC-----CccHHHHHHHHhcCCccEEEeCCcCCHHH-----------HHH
Confidence 4445554443 1 3777 444666 66522 22244454444456899999999999865 999
Q ss_pred HHHcCcceeecchhhhccc
Q 045794 383 YFRSGADKISIGSDAVYAA 401 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~ 401 (578)
++++|||.||+|+...+++
T Consensus 200 ~~~aGAD~IVvGn~iee~~ 218 (230)
T PF01884_consen 200 MAEAGADTIVVGNAIEEDP 218 (230)
T ss_dssp HHCTTSSEEEESCHHHHHH
T ss_pred HHHCCCCEEEECCEEEEcc
Confidence 9999999999999988853
No 290
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.64 E-value=0.00017 Score=74.54 Aligned_cols=96 Identities=22% Similarity=0.263 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCC-----------------CCCC-----CHHHHHHHHhhCC--CcEEEecCCCCH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQ-----------------GKGF-----DMDLIKLISDAVS--IPVIASSGAGAV 534 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~-----------------~~G~-----d~~li~~l~~~~~--ipVIasGGi~s~ 534 (578)
++.++++.+.+.|++.|++++...+++ ++|+ -+..++++.+.++ +|||..|||.|.
T Consensus 174 di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~ 253 (310)
T COG0167 174 DIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETG 253 (310)
T ss_pred HHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcH
Confidence 578999999999999999887444333 3454 3578888988876 999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccC-CCCH----HHHHHHHHhCCCe
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRK-EVPI----QSVKEHLYKEGIE 575 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~-~~~~----~~~~~~l~~~~i~ 575 (578)
+|..+.+. +||+.|-|+|+++.. +..+ +.+.++|++.|+.
T Consensus 254 ~DA~E~i~-aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g~~ 298 (310)
T COG0167 254 EDALEFIL-AGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKGFE 298 (310)
T ss_pred HHHHHHHH-cCCchheeeeeeeeeCchHHHHHHHHHHHHHHHcCCC
Confidence 99999985 999999999998754 6554 4455667776653
No 291
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.64 E-value=0.00021 Score=75.48 Aligned_cols=77 Identities=23% Similarity=0.218 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+.++.+.+.|++.|++-+--.-....++ .++.+.++++.+ ++|||++|||++-.|+.+++. +||++|++|+++..
T Consensus 232 ~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLa-lGA~~V~iGr~~l~ 310 (351)
T cd04737 232 PEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALA-SGADAVAVGRPVLY 310 (351)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 57889999999999998532111111344 578888998777 699999999999999999996 99999999998876
Q ss_pred C
Q 045794 558 K 558 (578)
Q Consensus 558 ~ 558 (578)
+
T Consensus 311 ~ 311 (351)
T cd04737 311 G 311 (351)
T ss_pred H
Confidence 5
No 292
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.64 E-value=0.00016 Score=71.58 Aligned_cols=87 Identities=24% Similarity=0.386 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
.-+++++++.||..|--.. +--|+.+|+ |...++.+.+..++|||..+||++++|+.++.+ +|+|||+++|++..-.
T Consensus 148 ~v~a~rLed~Gc~aVMPlg-sPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmE-lGaDgVL~nSaIakA~ 225 (267)
T CHL00162 148 PMLAKHLEDIGCATVMPLG-SPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAME-LGASGVLLNTAVAQAK 225 (267)
T ss_pred HHHHHHHHHcCCeEEeecc-CcccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHH-cCCCEEeecceeecCC
Confidence 4589999999997766443 445899998 899999999999999999999999999999996 9999999999998554
Q ss_pred CCHHHHHHHHH
Q 045794 560 VPIQSVKEHLY 570 (578)
Q Consensus 560 ~~~~~~~~~l~ 570 (578)
.+ .+..+.++
T Consensus 226 dP-~~mA~a~~ 235 (267)
T CHL00162 226 NP-EQMAKAMK 235 (267)
T ss_pred CH-HHHHHHHH
Confidence 43 44444443
No 293
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.64 E-value=0.0029 Score=65.00 Aligned_cols=212 Identities=16% Similarity=0.206 Sum_probs=125.9
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
...+.+..++.+.. .|+.+....-...+...-..+++..+++..+||.+ .++ |..+++.+++.++.|+
T Consensus 31 ~~avi~aAe~~~~P--vii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~l-----HlD-----H~~~~e~i~~Al~~G~ 98 (281)
T PRK06806 31 VMGAIKAAEELNSP--IILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAV-----HFD-----HGMTFEKIKEALEIGF 98 (281)
T ss_pred HHHHHHHHHHhCCC--EEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHcCC
Confidence 33455555566655 44555431111112122335677788888899864 222 4556788999999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCT 468 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (578)
+.|-+....... .+.++. -.-+.+++..|| +.+..+.-. + | |++- ...
T Consensus 99 tsVm~d~s~~~~-~eni~~-----t~~v~~~a~~~g---v~veaE~gh--l----------------G--~~d~---~~~ 146 (281)
T PRK06806 99 TSVMFDGSHLPL-EENIQK-----TKEIVELAKQYG---ATVEAEIGR--V----------------G--GSED---GSE 146 (281)
T ss_pred CEEEEcCCCCCH-HHHHHH-----HHHHHHHHHHcC---CeEEEEeee--E----------------C--CccC---Ccc
Confidence 999995444432 222210 123455556676 333333221 1 0 0000 000
Q ss_pred EcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCC---CCCHHHHHHHHhhCCCcEEEec--CCCCHHHHHHHHHh
Q 045794 469 VNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK---GFDMDLIKLISDAVSIPVIASS--GAGAVEHFSDVFRK 543 (578)
Q Consensus 469 ~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~---G~d~~li~~l~~~~~ipVIasG--Gi~s~eDi~~l~~~ 543 (578)
..| .+--++.+..+..++.|+|.+-+---+.-|+.. ..+++.++++++.+++|+++-| || +.+++.++.+
T Consensus 147 ~~g---~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI-~~e~~~~~i~- 221 (281)
T PRK06806 147 DIE---MLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGI-SPEDFKKCIQ- 221 (281)
T ss_pred ccc---ceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCC-CHHHHHHHHH-
Confidence 001 112356666555667799999872222222333 3599999999999999999999 88 6788999985
Q ss_pred cCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 544 TNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 544 ~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
.|++++-|.|++... ....+++++.+
T Consensus 222 ~G~~kinv~T~i~~a--~~~a~~~~~~~ 247 (281)
T PRK06806 222 HGIRKINVATATFNS--VITAVNNLVLN 247 (281)
T ss_pred cCCcEEEEhHHHHHH--HHHHHHHHHHh
Confidence 999999999998763 35556666654
No 294
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=97.61 E-value=0.00018 Score=74.54 Aligned_cols=92 Identities=21% Similarity=0.272 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHcCCcEEEEec-------cCCCC----------CCCCC-----CHHHHHHHHhhCC--CcEEEecCCCCH
Q 045794 479 GAYELAKAVEDLGAGEILLNC-------IDCDG----------QGKGF-----DMDLIKLISDAVS--IPVIASSGAGAV 534 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~td-------i~~dG----------~~~G~-----d~~li~~l~~~~~--ipVIasGGi~s~ 534 (578)
...+.+.++.+.|++.|++++ ++.+. -++|+ -+..++++++.++ +|||++|||.+.
T Consensus 177 ~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~ 256 (295)
T PF01180_consen 177 EPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSG 256 (295)
T ss_dssp HHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SH
T ss_pred HHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCH
Confidence 456777778889999988433 12221 13454 2567888888887 999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhh-ccCCCCHHHHHHHHHh
Q 045794 535 EHFSDVFRKTNASAALAAGIF-HRKEVPIQSVKEHLYK 571 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~-~~~~~~~~~~~~~l~~ 571 (578)
+|+.+.+. .||+.|.++|++ +.|+..+.++.+-|++
T Consensus 257 ~da~e~l~-aGA~~Vqv~Sal~~~Gp~~~~~i~~~L~~ 293 (295)
T PF01180_consen 257 EDAIEFLM-AGASAVQVCSALIYRGPGVIRRINRELEE 293 (295)
T ss_dssp HHHHHHHH-HTESEEEESHHHHHHGTTHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCHheechhhhhcCcHHHHHHHHHHHh
Confidence 99999996 999999999999 6688888888877754
No 295
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=97.60 E-value=0.00015 Score=77.08 Aligned_cols=102 Identities=18% Similarity=0.179 Sum_probs=81.6
Q ss_pred EEEcccccCCCCCHHHHHHHHH-HcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC-C-CcEEEecCCCCHHHHHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVE-DLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV-S-IPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~-~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~-~-ipVIasGGi~s~eDi~~l~~ 542 (578)
|+++-+....-.-+-+++.++. +.|+..|.+|.++|..+++-. ||+.+.++++.. . +|+|.+|.|-|.+|..+-+.
T Consensus 395 VKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~ 474 (614)
T KOG2333|consen 395 VKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLN 474 (614)
T ss_pred EEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhh
Confidence 3344333332334567888887 899999999999999999865 999999998766 3 89999999999999666554
Q ss_pred hcC-chHHhhhhhhccCCCCHHHHHHH
Q 045794 543 KTN-ASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 543 ~~G-~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
..+ +++||||+...-++|.|.|+++.
T Consensus 475 ~~p~v~svMIaRGALIKPWIFtEIkeq 501 (614)
T KOG2333|consen 475 QNPNVDSVMIARGALIKPWIFTEIKEQ 501 (614)
T ss_pred cCCCcceEEeeccccccchHhhhhhhh
Confidence 443 99999999999999999999863
No 296
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.59 E-value=0.00086 Score=66.99 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=60.1
Q ss_pred HHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCC--CCHHH----HHHHHHhcCchHHhhhhhhc
Q 045794 483 LAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGA--GAVEH----FSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 483 ~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi--~s~eD----i~~l~~~~G~~gv~vgsa~~ 556 (578)
.++.+.+.|++.|-+.. ..+++.++++.+.+.+||+++||+ .+.+| +.++.+ .|++|+++|+++.
T Consensus 148 ~~~~a~~~GaD~Ik~~~--------~~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~-~Ga~gv~vg~~i~ 218 (235)
T cd00958 148 AARIGAELGADIVKTKY--------TGDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAME-AGAAGVAVGRNIF 218 (235)
T ss_pred HHHHHHHHCCCEEEecC--------CCCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHH-cCCcEEEechhhh
Confidence 36778899999777631 127899999999899999999997 56655 788885 9999999999998
Q ss_pred cCCCCHHHHHHHHH
Q 045794 557 RKEVPIQSVKEHLY 570 (578)
Q Consensus 557 ~~~~~~~~~~~~l~ 570 (578)
+.+- +.+..+.|+
T Consensus 219 ~~~d-p~~~~~~~~ 231 (235)
T cd00958 219 QRPD-PVAMLRAIS 231 (235)
T ss_pred cCCC-HHHHHHHHH
Confidence 7774 444444443
No 297
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.58 E-value=0.0026 Score=68.35 Aligned_cols=172 Identities=11% Similarity=0.101 Sum_probs=111.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
-|..++++...+.|++.|.+=+=+.... .-.....-++++++..++++.+ ++. ++-.++.
T Consensus 217 td~~~~ve~aL~aGv~~VQLReK~ls~~---el~~la~~l~~l~~~~gv~LiI----ND~-------------~dlAl~~ 276 (437)
T PRK12290 217 VDDVEWIERLLPLGINTVQLRIKDPQQA---DLEQQIIRAIALGREYNAQVFI----NDY-------------WQLAIKH 276 (437)
T ss_pred eCCHHHHHHHHhCCCCEEEEeCCCCCHH---HHHHHHHHHHHHHHHhCCEEEE----ECH-------------HHHHHHc
Confidence 3445788899999998877653332100 0011223344555666788874 443 6678889
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
||+.|=+|-.-+.. .++.+..|+. .++++.+.
T Consensus 277 gAdGVHLGQeDL~~----------------~~aR~ilg~~-~iIGvStH------------------------------- 308 (437)
T PRK12290 277 QAYGVHLGQEDLEE----------------ANLAQLTDAG-IRLGLSTH------------------------------- 308 (437)
T ss_pred CCCEEEcChHHcch----------------hhhhhhcCCC-CEEEEecC-------------------------------
Confidence 99999999644431 2333334443 23334321
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC----CCCCHHHHHHHHhhC---------CCcEEEecCCCC
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG----KGFDMDLIKLISDAV---------SIPVIASSGAGA 533 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~----~G~d~~li~~l~~~~---------~ipVIasGGi~s 533 (578)
++ +-+.++.+.|++.|.+-.+-...+. ....++.++++++.+ .+||+|-||| +
T Consensus 309 ------------s~-eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~ 374 (437)
T PRK12290 309 ------------GY-YELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-D 374 (437)
T ss_pred ------------CH-HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-C
Confidence 22 3456677899999997665444333 234677777766544 6999999999 7
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCC
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~ 561 (578)
.+++.++.+ +|++||.+-|++...+-+
T Consensus 375 ~~Ni~~vl~-aGa~GVAVVSAI~~A~DP 401 (437)
T PRK12290 375 QSNAEQVWQ-CGVSSLAVVRAITLAEDP 401 (437)
T ss_pred HHHHHHHHH-cCCCEEEEehHhhcCCCH
Confidence 899999995 999999999999765543
No 298
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.56 E-value=0.0012 Score=66.91 Aligned_cols=184 Identities=17% Similarity=0.235 Sum_probs=111.8
Q ss_pred HHHHHHHHHcCCCeEEEEec---ccCCCCC-------------CCCchhHHHHHHHh-hhccccEEEeCCccccccCCCC
Q 045794 310 VELARQYYKEGADEISFLNI---TGFRDFP-------------LGDLPMLQVLRLTS-ENVFVPLTVGGGIRDFTDANGR 372 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl---~~~~~~~-------------~~~~~~~~~i~~i~-~~~~~pi~~gGGir~~~d~~~~ 372 (578)
.++++.+.+.|+|-|=+ -+ |-.-||+ ..-..-++++++++ +...+|+.+=+-.+.+-.
T Consensus 27 ~~~~~~l~~~GaD~iEi-GiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~---- 101 (259)
T PF00290_consen 27 LEILKALEEAGADIIEI-GIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQ---- 101 (259)
T ss_dssp HHHHHHHHHTTBSSEEE-E--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHH----
T ss_pred HHHHHHHHHcCCCEEEE-CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhc----
Confidence 67888888888885443 11 1111111 11123357788888 667899977655443210
Q ss_pred ccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeee
Q 045794 373 HYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRV 452 (578)
Q Consensus 373 ~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~ 452 (578)
|.--+=++++-++|++-+++=-.-++.. +.+.++++++|=. ++.-+-
T Consensus 102 -~G~e~F~~~~~~aGvdGlIipDLP~ee~------------~~~~~~~~~~gl~-~I~lv~------------------- 148 (259)
T PF00290_consen 102 -YGIERFFKEAKEAGVDGLIIPDLPPEES------------EELREAAKKHGLD-LIPLVA------------------- 148 (259)
T ss_dssp -H-HHHHHHHHHHHTEEEEEETTSBGGGH------------HHHHHHHHHTT-E-EEEEEE-------------------
T ss_pred -cchHHHHHHHHHcCCCEEEEcCCChHHH------------HHHHHHHHHcCCe-EEEEEC-------------------
Confidence 1111226667788999999865545432 3456777888843 333222
Q ss_pred ccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc-CCCCCCCCCC---HHHHHHHHhhCCCcEEEe
Q 045794 453 TDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI-DCDGQGKGFD---MDLIKLISDAVSIPVIAS 528 (578)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi-~~dG~~~G~d---~~li~~l~~~~~ipVIas 528 (578)
..+..+.++++.+..-+.|-+... ...|.....+ .+.++++++.++.||.++
T Consensus 149 ------------------------p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vG 204 (259)
T PF00290_consen 149 ------------------------PTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVG 204 (259)
T ss_dssp ------------------------TTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEE
T ss_pred ------------------------CCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEe
Confidence 223466777777765554444343 3344444332 267888899889999999
Q ss_pred cCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 529 SGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 529 GGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
=||+++++++++. .++|||+|||++-+
T Consensus 205 FGI~~~e~~~~~~--~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 205 FGISTPEQAKKLA--AGADGVIVGSAFVK 231 (259)
T ss_dssp SSS-SHHHHHHHH--TTSSEEEESHHHHH
T ss_pred cCCCCHHHHHHHH--ccCCEEEECHHHHH
Confidence 9999999999996 69999999999853
No 299
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=97.56 E-value=0.00019 Score=75.61 Aligned_cols=88 Identities=15% Similarity=0.245 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC-------------CCCCCCCC-----HHHHHHHHhhC--CCcEEEecCCCCHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC-------------DGQGKGFD-----MDLIKLISDAV--SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~-------------dG~~~G~d-----~~li~~l~~~~--~ipVIasGGi~s~eDi~ 538 (578)
++.++++.+++.|++.|++++... -|-++|+- +..++++.+.+ ++|||+.|||.+.+|+.
T Consensus 225 ~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~ 304 (335)
T TIGR01036 225 DLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDAL 304 (335)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence 478999999999999999876432 23344442 35777777766 69999999999999999
Q ss_pred HHHHhcCchHHhhhhhhcc-CCCCHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHR-KEVPIQSVKE 567 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~-~~~~~~~~~~ 567 (578)
+.+. .||+.|.++|++.. |+.-+..+++
T Consensus 305 e~l~-aGA~~Vqv~ta~~~~Gp~~~~~i~~ 333 (335)
T TIGR01036 305 EKIR-AGASLLQIYSGFIYWGPPLVKEIVK 333 (335)
T ss_pred HHHH-cCCcHHHhhHHHHHhCchHHHHHHh
Confidence 9996 89999999999865 6765665554
No 300
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.55 E-value=0.002 Score=64.29 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=114.3
Q ss_pred CCHHH---HHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVE---LARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~---~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.||.. .++.+.+.|++++| +|+ |+..- .+-.--.+.++++++.+ .+|+.+--=+.+.+ ..++
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H-~DimDg~fv--pn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~----------~~i~ 82 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLH-VDVMDGHFV--PNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPE----------KWVD 82 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEE-EecccCccC--CCcCcCHHHHHHHHhcCCCCCEEEEECCCCHH----------HHHH
Confidence 45554 45556667999999 565 34321 11122367888888765 67765433344443 3578
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
.+.++|||.+.+=.++-... + .+.++.+ +++|. ++-+++..
T Consensus 83 ~~~~~Gad~itvH~ea~~~~---~-------~~~l~~i-k~~G~-~~gval~p--------------------------- 123 (228)
T PTZ00170 83 DFAKAGASQFTFHIEATEDD---P-------KAVARKI-REAGM-KVGVAIKP--------------------------- 123 (228)
T ss_pred HHHHcCCCEEEEeccCCchH---H-------HHHHHHH-HHCCC-eEEEEECC---------------------------
Confidence 89999999998855443210 0 0233443 45663 34444431
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHH-cCCcEEEEeccC--CCCCCCCC-CHHHHHHHHhhC-CCcEEEecCCCCHHH
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVED-LGAGEILLNCID--CDGQGKGF-DMDLIKLISDAV-SIPVIASSGAGAVEH 536 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~-~G~~~ii~tdi~--~dG~~~G~-d~~li~~l~~~~-~ipVIasGGi~s~eD 536 (578)
..+ .+.++.+.+ ..++.|+++.+. .+|....+ .++.++++++.. ...+.+.||| +.+.
T Consensus 124 ---------------~t~-~e~l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI-~~~t 186 (228)
T PTZ00170 124 ---------------KTP-VEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGI-NLET 186 (228)
T ss_pred ---------------CCC-HHHHHHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCC-CHHH
Confidence 112 333334432 236777777666 33333222 256667776654 4678999999 5688
Q ss_pred HHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 537 FSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 537 i~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+..+.+ .|++.+++||++...+ ++++..+.++
T Consensus 187 i~~~~~-aGad~iVvGsaI~~a~-d~~~~~~~i~ 218 (228)
T PTZ00170 187 IDIAAD-AGANVIVAGSSIFKAK-DRKQAIELLR 218 (228)
T ss_pred HHHHHH-cCCCEEEEchHHhCCC-CHHHHHHHHH
Confidence 999885 8999999999997654 3444444443
No 301
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=97.54 E-value=0.002 Score=67.20 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=50.7
Q ss_pred HHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc-CCCCH----HHHHHHHHhCCC
Q 045794 511 MDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR-KEVPI----QSVKEHLYKEGI 574 (578)
Q Consensus 511 ~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~-~~~~~----~~~~~~l~~~~i 574 (578)
+..+.++.+.+ ++|||++|||.+.+|+.+.+. +||++|.++|+++. |+-.+ ++++++|.+.|+
T Consensus 228 l~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~-aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~ 297 (310)
T PRK02506 228 LANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHIL-CGASMVQVGTALHKEGPAVFERLTKELKAIMAEKGY 297 (310)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH-cCCCHHhhhHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 35666776777 699999999999999999995 99999999999876 56544 456667777775
No 302
>PRK06801 hypothetical protein; Provisional
Probab=97.54 E-value=0.0068 Score=62.32 Aligned_cols=215 Identities=12% Similarity=0.166 Sum_probs=128.9
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
-..+.+..++.++.-| +.+....-...+-..-..+++.++++..+||.+ .++ |..+++.+++.++.|+
T Consensus 31 ~~avi~AAe~~~~PvI--l~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~l-----HlD-----H~~~~e~i~~Ai~~Gf 98 (286)
T PRK06801 31 LRALFAAAKQERSPFI--INIAEVHFKYISLESLVEAVKFEAARHDIPVVL-----NLD-----HGLHFEAVVRALRLGF 98 (286)
T ss_pred HHHHHHHHHHHCCCEE--EEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHhCC
Confidence 3345555556666544 444321111122234567788888888999864 222 5667888999999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCT 468 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (578)
+.|.+.-..+.. ++.+. ....+.+++..||- .|-.-+..-.+. | + .+.
T Consensus 99 tSVm~D~S~l~~-eeNi~-----~t~~v~~~a~~~gv-~VE~ElG~vgg~---------------e----~------~v~ 146 (286)
T PRK06801 99 SSVMFDGSTLEY-EENVR-----QTREVVKMCHAVGV-SVEAELGAVGGD---------------E----G------GAL 146 (286)
T ss_pred cEEEEcCCCCCH-HHHHH-----HHHHHHHHHHHcCC-eEEeecCcccCC---------------C----C------Ccc
Confidence 999995444431 12111 01224445667773 232333322110 0 0 000
Q ss_pred EcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecC--CCCHHHHHHHHHh
Q 045794 469 VNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSG--AGAVEHFSDVFRK 543 (578)
Q Consensus 469 ~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGG--i~s~eDi~~l~~~ 543 (578)
..........++.+..+.+++.|++.+-+.-=+.-|.+.+ .|++.++++++.+++|+++-|| +. .++++++.+
T Consensus 147 ~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~-~e~~~~~i~- 224 (286)
T PRK06801 147 YGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS-DADFRRAIE- 224 (286)
T ss_pred cCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHHH-
Confidence 0000011122556666666689999888833345555555 5999999999999999999999 74 578999885
Q ss_pred cCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 544 TNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 544 ~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
.|+.++-++|.+...- ...++++|.+
T Consensus 225 ~Gi~KINv~T~~~~a~--~~~~~~~~~~ 250 (286)
T PRK06801 225 LGIHKINFYTGMSQAA--LAAVEQRMTH 250 (286)
T ss_pred cCCcEEEehhHHHHHH--HHHHHHHHHh
Confidence 9999999999886433 4455666543
No 303
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=97.54 E-value=0.004 Score=62.24 Aligned_cols=176 Identities=22% Similarity=0.199 Sum_probs=116.4
Q ss_pred HHHHHHHHcCCCeEEEEe-cccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChH------HHHHHH
Q 045794 311 ELARQYYKEGADEISFLN-ITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSL------EVASEY 383 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~D-l~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~------~~~~~~ 383 (578)
+-|..-.+.||++|-+.+ |. .+| -.+...+|+.+.+.+.+||.+ =||--. -.|.|+.. ++++.+
T Consensus 12 ~~a~~A~~~GAdRiELc~~L~--~GG---lTPS~g~i~~~~~~~~ipv~v--MIRPR~--gdF~Ys~~E~~~M~~di~~~ 82 (248)
T PRK11572 12 ECALTAQQAGADRIELCAAPK--EGG---LTPSLGVLKSVRERVTIPVHP--IIRPRG--GDFCYSDGEFAAMLEDIATV 82 (248)
T ss_pred HHHHHHHHcCCCEEEEccCcC--CCC---cCCCHHHHHHHHHhcCCCeEE--EEecCC--CCCCCCHHHHHHHHHHHHHH
Confidence 445556678999998864 32 233 267789999999988899876 455432 24788774 467888
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.++|++-+|+|...-. ...+.+.++++.+.-++-.+++ =|.+|.
T Consensus 83 ~~~GadGvV~G~L~~d---------g~vD~~~~~~Li~~a~~~~vTF-------------------HRAfD~-------- 126 (248)
T PRK11572 83 RELGFPGLVTGVLDVD---------GHVDMPRMRKIMAAAGPLAVTF-------------------HRAFDM-------- 126 (248)
T ss_pred HHcCCCEEEEeeECCC---------CCcCHHHHHHHHHHhcCCceEE-------------------echhhc--------
Confidence 8999999999975433 2345677787776554323333 012221
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~ 542 (578)
. .++.+.++.+.++|+++|+-..=.. .-. -.++.|+++.+.. +.-|+++||| +.+.+.++.
T Consensus 127 ------------~-~d~~~al~~l~~lG~~rILTSGg~~-~a~--~g~~~L~~lv~~a~~~~Im~GgGV-~~~Nv~~l~- 188 (248)
T PRK11572 127 ------------C-ANPLNALKQLADLGVARILTSGQQQ-DAE--QGLSLIMELIAASDGPIIMAGAGV-RLSNLHKFL- 188 (248)
T ss_pred ------------c-CCHHHHHHHHHHcCCCEEECCCCCC-CHH--HHHHHHHHHHHhcCCCEEEeCCCC-CHHHHHHHH-
Confidence 1 2678889999999999998432111 111 1467788776644 3338999999 568899987
Q ss_pred hcCchHH
Q 045794 543 KTNASAA 549 (578)
Q Consensus 543 ~~G~~gv 549 (578)
.+|+..+
T Consensus 189 ~tG~~~~ 195 (248)
T PRK11572 189 DAGVREV 195 (248)
T ss_pred HcCCCEE
Confidence 4887644
No 304
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.54 E-value=0.00029 Score=73.86 Aligned_cols=91 Identities=21% Similarity=0.234 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH-
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR- 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~- 385 (578)
.+.+++|+.+.+.|++.|++-.-+.. +......+.+.|+++++.+++||..-|||++.+| ++++++
T Consensus 149 ~~~~~~a~~le~~G~d~i~vh~rt~~--~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~d-----------a~~~l~~ 215 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQALTIHGRTRA--CLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLK-----------ARAVLDY 215 (321)
T ss_pred chHHHHHHHHHHhCCCEEEEecCccc--cccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHH-----------HHHHHhc
Confidence 47889999999999999987654432 1112236789999999999999999999999977 999997
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHh
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRV 422 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (578)
.|||-|.+|+.++.| |-+++++.+.
T Consensus 216 ~gadgVmiGR~~l~n------------P~if~~~~~~ 240 (321)
T PRK10415 216 TGADALMIGRAAQGR------------PWIFREIQHY 240 (321)
T ss_pred cCCCEEEEChHhhcC------------ChHHHHHHHH
Confidence 699999999999985 3566777543
No 305
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.51 E-value=0.004 Score=60.63 Aligned_cols=171 Identities=15% Similarity=0.157 Sum_probs=113.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+-+++++.+.+.|++-+=|. ++. ..-++.|++++++.. .+.+| |.|.+.++ +++..+
T Consensus 16 ~~a~~ia~al~~gGi~~iEit-~~t--------p~a~~~I~~l~~~~~-~~~vGAGTVl~~e~-----------a~~ai~ 74 (201)
T PRK06015 16 EHAVPLARALAAGGLPAIEIT-LRT--------PAALDAIRAVAAEVE-EAIVGAGTILNAKQ-----------FEDAAK 74 (201)
T ss_pred HHHHHHHHHHHHCCCCEEEEe-CCC--------ccHHHHHHHHHHHCC-CCEEeeEeCcCHHH-----------HHHHHH
Confidence 467789999999998855443 222 223788999988764 47787 67777755 999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.++--. + ++++++. ++++|- .+
T Consensus 75 aGA~FivSP~--~-------------~~~vi~~-a~~~~i----~~---------------------------------- 100 (201)
T PRK06015 75 AGSRFIVSPG--T-------------TQELLAA-ANDSDV----PL---------------------------------- 100 (201)
T ss_pred cCCCEEECCC--C-------------CHHHHHH-HHHcCC----CE----------------------------------
Confidence 9999776532 2 2355555 556651 11
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
+.| -.++- .+..+.++|++.+=+..-+.- .|+ ..++.++.-+ ++|++..||| +.+.+.+.++ .
T Consensus 101 ---iPG-----~~Tpt-Ei~~A~~~Ga~~vK~FPa~~~---GG~--~yikal~~plp~~~l~ptGGV-~~~n~~~~l~-a 164 (201)
T PRK06015 101 ---LPG-----AATPS-EVMALREEGYTVLKFFPAEQA---GGA--AFLKALSSPLAGTFFCPTGGI-SLKNARDYLS-L 164 (201)
T ss_pred ---eCC-----CCCHH-HHHHHHHCCCCEEEECCchhh---CCH--HHHHHHHhhCCCCcEEecCCC-CHHHHHHHHh-C
Confidence 112 12333 445667899999988884332 234 5677777655 6999999999 5689999986 7
Q ss_pred CchHHhhhhhhccCCC----CHHHHHHH
Q 045794 545 NASAALAAGIFHRKEV----PIQSVKEH 568 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~----~~~~~~~~ 568 (578)
|+..+..|+.+..+.+ .++++.+.
T Consensus 165 g~~~~~ggs~l~~~~~~~~~~~~~i~~~ 192 (201)
T PRK06015 165 PNVVCVGGSWVAPKELVAAGDWAGITKL 192 (201)
T ss_pred CCeEEEEchhhCCchhhhcccHHHHHHH
Confidence 6666766888865432 34445443
No 306
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.51 E-value=0.00043 Score=73.18 Aligned_cols=76 Identities=21% Similarity=0.152 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCC-CCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGK-GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~-G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+-++.+.+.|++.|++..-.-..... ...++.+.++++.+++|||+.|||++..|+.+++. +||++|++|+++..
T Consensus 247 ~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALa-LGA~aV~iGr~~l~ 323 (361)
T cd04736 247 AEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKALA-LGANAVLLGRATLY 323 (361)
T ss_pred HHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 567888999999999987532211111 13588999998888999999999999999999995 99999999998874
No 307
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=97.49 E-value=0.00027 Score=70.26 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++|+.+.+.|++.||+ | .-..+ ....+++.|+++++.+. +||..-|||++.+| ++++++
T Consensus 148 ~~~~~~a~~l~~aGad~i~V-d--~~~~g--~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~ed-----------a~e~l~ 211 (231)
T TIGR00736 148 LDELIDALNLVDDGFDGIHV-D--AMYPG--KPYADMDLLKILSEEFNDKIIIGNNSIDDIES-----------AKEMLK 211 (231)
T ss_pred chHHHHHHHHHHcCCCEEEE-e--eCCCC--CchhhHHHHHHHHHhcCCCcEEEECCcCCHHH-----------HHHHHH
Confidence 36789999999999999997 4 21111 11268999999999884 99988899999977 999999
Q ss_pred cCcceeecchhhhccc
Q 045794 386 SGADKISIGSDAVYAA 401 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~ 401 (578)
.|||-|.+|+.++.++
T Consensus 212 ~GAd~VmvgR~~l~~~ 227 (231)
T TIGR00736 212 AGADFVSVARAILKGN 227 (231)
T ss_pred hCCCeEEEcHhhccCC
Confidence 9999999999988753
No 308
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=97.49 E-value=0.00042 Score=73.59 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCCCCC-CC-CCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhh
Q 045794 478 IGAYELAKAVEDLGAGEILLNCIDCDGQG-KG-FDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAG 553 (578)
Q Consensus 478 ~~~~e~~~~~~~~G~~~ii~tdi~~dG~~-~G-~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgs 553 (578)
....++++.+++.|++.|.++..+++..+ .| -++..+.++.+..++|||+ |++.+.++.+++++ +|||+|++|+
T Consensus 142 ~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~-aGaDgV~~G~ 217 (369)
T TIGR01304 142 QNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLMR-TGAAGVIVGP 217 (369)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHH-cCCCEEEECC
Confidence 36789999999999999999998877655 33 3788888888888999998 88999999999996 9999999775
No 309
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.49 E-value=0.00075 Score=70.57 Aligned_cols=140 Identities=19% Similarity=0.285 Sum_probs=104.0
Q ss_pred cEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEecc
Q 045794 356 PLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPR 435 (578)
Q Consensus 356 pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~ 435 (578)
.+.+|.+|.+.|+ +.+.+..+..+|+|.|+|.|+-=+. .|. .++++-+.+.|+.-.|+.
T Consensus 239 qll~gAaiGTre~-------dK~rl~ll~~aGvdvviLDSSqGnS--~~q-------iemik~iK~~yP~l~Via----- 297 (503)
T KOG2550|consen 239 QLLCGAAIGTRDD-------DKERLDLLVQAGVDVVILDSSQGNS--IYQ-------LEMIKYIKETYPDLQIIA----- 297 (503)
T ss_pred ceeeeeccccccc-------hhHHHHHhhhcCCcEEEEecCCCcc--hhH-------HHHHHHHHhhCCCceeec-----
Confidence 4667888888776 4567777889999999997654432 222 488999999997533332
Q ss_pred ccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEE---------Ee-ccCCCCC
Q 045794 436 RVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEIL---------LN-CIDCDGQ 505 (578)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii---------~t-di~~dG~ 505 (578)
| ++-..+-++.|...|+|.+= +| .+-.-|.
T Consensus 298 -----------------------G-----------------NVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~Gr 337 (503)
T KOG2550|consen 298 -----------------------G-----------------NVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGR 337 (503)
T ss_pred -----------------------c-----------------ceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccC
Confidence 1 12235678888899998653 22 4566677
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
-+|.-.--+.+++....+||||-|||.+..++.+++. +|++.||.|+.+..
T Consensus 338 pQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~-lGAstVMmG~lLAg 388 (503)
T KOG2550|consen 338 PQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALG-LGASTVMMGGLLAG 388 (503)
T ss_pred CcccchhhHHHHHHhcCCceeecCCcCccchhHhhhh-cCchhheecceeee
Confidence 7777666666777888999999999999999999995 99999999997753
No 310
>PRK08999 hypothetical protein; Provisional
Probab=97.49 E-value=0.0021 Score=66.98 Aligned_cols=163 Identities=11% Similarity=-0.001 Sum_probs=107.2
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
-.+.++...+.|++.|++=+=+.... ......+.++++++..++++.+- +. ++-+++.|+
T Consensus 146 ~~~~~~~~l~~g~~~vqlR~k~~~~~---~~~~~~~~l~~~~~~~~~~liin----d~-------------~~la~~~~~ 205 (312)
T PRK08999 146 FLARLERALAAGIRLIQLRAPQLPPA---AYRALARAALGLCRRAGAQLLLN----GD-------------PELAEDLGA 205 (312)
T ss_pred HHHHHHHHHHCCCcEEEEeCCCCCHH---HHHHHHHHHHHHHHHhCCEEEEE----Cc-------------HHHHHhcCC
Confidence 35667676788999988865443110 11123344555556667888764 32 556788899
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCT 468 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (578)
+.|=+|..... ..+..+ +|++. ++++-+.
T Consensus 206 ~GvHl~~~d~~----------------~~~~r~-~~~~~-~ig~S~h--------------------------------- 234 (312)
T PRK08999 206 DGVHLTSAQLA----------------ALAARP-LPAGR-WVAASCH--------------------------------- 234 (312)
T ss_pred CEEEcChhhcC----------------hHhhcc-CCCCC-EEEEecC---------------------------------
Confidence 99988853332 112222 55443 3333321
Q ss_pred EcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC---CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 045794 469 VNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG---KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTN 545 (578)
Q Consensus 469 ~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~---~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G 545 (578)
+ .+-++++.+.|++.+.+-.+-...+. ....++.++++++.+++||+|-||| +.+++.++.+ +|
T Consensus 235 ----------~-~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~-~g 301 (312)
T PRK08999 235 ----------D-AEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEARE-HG 301 (312)
T ss_pred ----------C-HHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHH-hC
Confidence 1 23456777889999997665433333 3346889999999899999999999 8999999985 99
Q ss_pred chHHhhhhhh
Q 045794 546 ASAALAAGIF 555 (578)
Q Consensus 546 ~~gv~vgsa~ 555 (578)
++|+.+-+++
T Consensus 302 ~~gva~i~~~ 311 (312)
T PRK08999 302 AQGIAGIRGL 311 (312)
T ss_pred CCEEEEEEEe
Confidence 9999877665
No 311
>PRK08185 hypothetical protein; Provisional
Probab=97.48 E-value=0.0093 Score=61.19 Aligned_cols=210 Identities=17% Similarity=0.206 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
....+.+..++.+.+-|+=+.-...+ ..+ .....+++.++++..+||.+ .++ |..+++.++++++.|
T Consensus 25 ~~~avi~AAee~~sPvIl~~~~~~~~--~~~-~~~~~~~~~~a~~~~vPV~l-----HLD-----Hg~~~e~i~~ai~~G 91 (283)
T PRK08185 25 FLRAVVEEAEANNAPAIIAIHPNELD--FLG-DNFFAYVRERAKRSPVPFVI-----HLD-----HGATIEDVMRAIRCG 91 (283)
T ss_pred HHHHHHHHHHHhCCCEEEEeCcchhh--hcc-HHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHcC
Confidence 33455566666667644333222221 112 34677888889889999864 332 566788999999999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
.+-|.+.-..+.. ++ |.++.+++. ..|| +-+..-+ +.+ + |.
T Consensus 92 f~SVM~D~S~l~~-ee--------Ni~~t~~vv~~a~~~g---v~vE~El--G~v----------------g--~~---- 135 (283)
T PRK08185 92 FTSVMIDGSLLPY-EE--------NVALTKEVVELAHKVG---VSVEGEL--GTI----------------G--NT---- 135 (283)
T ss_pred CCEEEEeCCCCCH-HH--------HHHHHHHHHHHHHHcC---CeEEEEE--eec----------------c--Cc----
Confidence 9999995544432 22 234444444 6676 2222221 211 0 00
Q ss_pred EEEEEccccc-CCCCCHHHHHHHHHHcCCcEEEE-----eccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHH-HH
Q 045794 465 YQCTVNGGRE-GRPIGAYELAKAVEDLGAGEILL-----NCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVE-HF 537 (578)
Q Consensus 465 ~~~~~~g~~~-~~~~~~~e~~~~~~~~G~~~ii~-----tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~e-Di 537 (578)
+-....+.. ..-.++.+..+.+++-|++.+.+ |.+-..+...+.|+++++++++.+++|+++-||.+.++ ++
T Consensus 136 -e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~ 214 (283)
T PRK08185 136 -GTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEI 214 (283)
T ss_pred -ccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHH
Confidence 000000111 11125666666666669999998 77766655567799999999999999999999997665 46
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+++.+ .|+..|=+++.+...- .+.+++++.
T Consensus 215 ~~ai~-~GI~KiNi~T~l~~a~--~~~~~~~~~ 244 (283)
T PRK08185 215 AESVQ-LGVGKINISSDMKYAF--FKKVREILS 244 (283)
T ss_pred HHHHH-CCCeEEEeChHHHHHH--HHHHHHHHH
Confidence 66764 8988877777553221 334444443
No 312
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.48 E-value=0.00049 Score=71.28 Aligned_cols=87 Identities=24% Similarity=0.310 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHcCCCeEEEEe--------cccCC-------CCC---CCCchhHHHHHHHhhhccccEEEeCCcccccc
Q 045794 307 GKPVELARQYYKEGADEISFLN--------ITGFR-------DFP---LGDLPMLQVLRLTSENVFVPLTVGGGIRDFTD 368 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~D--------l~~~~-------~~~---~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d 368 (578)
.+..++|+.+.+.|++.|.+++ +.... ++. .-....++.++++.+.+++||...|||++.+|
T Consensus 166 ~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~d 245 (296)
T cd04740 166 TDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGED 245 (296)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 3788999999999999998864 31100 010 01123578899999988999999999999977
Q ss_pred CCCCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 369 ANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
+.+++.+|||-|.+++.++.+ |+++
T Consensus 246 -----------a~~~l~~GAd~V~igra~l~~-p~~~ 270 (296)
T cd04740 246 -----------ALEFLMAGASAVQVGTANFVD-PEAF 270 (296)
T ss_pred -----------HHHHHHcCCCEEEEchhhhcC-hHHH
Confidence 999999999999999999994 4443
No 313
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.46 E-value=0.0023 Score=65.46 Aligned_cols=208 Identities=16% Similarity=0.250 Sum_probs=125.6
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
..+.+..++.++. .|+.+....-...+-..-..+++.++++.++||.+ .++ |..+++.+++.+++|.+
T Consensus 32 ~avi~AAe~~~sP--vIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~l-----HLD-----H~~~~e~i~~Ai~~Gft 99 (283)
T PRK07998 32 ISILNAIERSGLP--NFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSL-----HLD-----HGKTFEDVKQAVRAGFT 99 (283)
T ss_pred HHHHHHHHHhCCC--EEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEE-----ECc-----CCCCHHHHHHHHHcCCC
Confidence 3455555566665 33444321001112122345778888888999864 222 55678889999999999
Q ss_pred eeecchhhhccchhhhhccccCCchHHHH---HHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQ---ISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
-|.++-+.+.- ++ |.+..++ ++..+| +++-.--+.+. |++ . .
T Consensus 100 SVM~DgS~l~~-ee--------Ni~~T~~vve~Ah~~g-----v~VEaElG~vg------------------g~e-d--~ 144 (283)
T PRK07998 100 SVMIDGAALPF-EE--------NIAFTKEAVDFAKSYG-----VPVEAELGAIL------------------GKE-D--D 144 (283)
T ss_pred EEEEeCCCCCH-HH--------HHHHHHHHHHHHHHcC-----CEEEEEeccCC------------------Ccc-c--c
Confidence 99995443331 10 2333333 344466 22221111110 000 0 0
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC--CHHHHHHHHhhCCCcEEEecCCCCH-HHHHHHHHh
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF--DMDLIKLISDAVSIPVIASSGAGAV-EHFSDVFRK 543 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~--d~~li~~l~~~~~ipVIasGGi~s~-eDi~~l~~~ 543 (578)
...+ ...-.++.+..+-+++.|+|.+-+--=+.-|.+++| |+++++++.+.+++|++.-||-+.+ ++++++.+
T Consensus 145 --~~~~-~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~- 220 (283)
T PRK07998 145 --HVSE-ADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVN- 220 (283)
T ss_pred --cccc-ccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHH-
Confidence 0000 111347888888889999997776555667777654 7899999999999999999998887 56777774
Q ss_pred cCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 544 TNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 544 ~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.|+.++=+++.+...- ...++++|.
T Consensus 221 ~Gi~KiNi~Tel~~a~--~~~~~~~l~ 245 (283)
T PRK07998 221 YKVAKVNIASDLRKAF--ITTVGKAYV 245 (283)
T ss_pred cCCcEEEECHHHHHHH--HHHHHHHHH
Confidence 8999988888664322 344555553
No 314
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.46 E-value=0.006 Score=58.57 Aligned_cols=181 Identities=16% Similarity=0.131 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc---cccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV---FVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~---~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
..+.++++.+.+.|++.|.+. + ++++.+.+.+ .+|+.+|-|-.+. +.++..+.+.++.+
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~---g------------~~i~~~~~~~~~~~~~v~~~v~~~~~---~~~~~~~~~~a~~a 74 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVN---P------------GYVRLAADALAGSDVPVIVVVGFPTG---LTTTEVKVAEVEEA 74 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEEC---H------------HHHHHHHHHhCCCCCeEEEEecCCCC---CCcHHHHHHHHHHH
Confidence 457788888888898876543 1 3444444433 4888887555541 12234477889999
Q ss_pred HHcCcceeecchhhhccc---hhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCC
Q 045794 384 FRSGADKISIGSDAVYAA---EDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGE 460 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (578)
.++|||-+.+-.-....+ ++.+ .+.++++++..+. .+.+.+...
T Consensus 75 ~~~Gad~i~v~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~-~~pv~iy~~------------------------- 121 (201)
T cd00945 75 IDLGADEIDVVINIGSLKEGDWEEV-------LEEIAAVVEAADG-GLPLKVILE------------------------- 121 (201)
T ss_pred HHcCCCEEEEeccHHHHhCCCHHHH-------HHHHHHHHHHhcC-CceEEEEEE-------------------------
Confidence 999999988743222111 1111 2555666665311 123323211
Q ss_pred CcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHH
Q 045794 461 EYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~ 538 (578)
.++. .+.-.+.+.++.+.+.|++.|=.+.-. ...+.|++.++++.+.. ++|+++.||+.+++.+.
T Consensus 122 ---------p~~~-~~~~~~~~~~~~~~~~g~~~iK~~~~~---~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~ 188 (201)
T cd00945 122 ---------TRGL-KTADEIAKAARIAAEAGADFIKTSTGF---GGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDAL 188 (201)
T ss_pred ---------CCCC-CCHHHHHHHHHHHHHhCCCEEEeCCCC---CCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHH
Confidence 1111 001123444555678888877644311 11356899999998877 67999999999999999
Q ss_pred HHHHhcCchHHhhh
Q 045794 539 DVFRKTNASAALAA 552 (578)
Q Consensus 539 ~l~~~~G~~gv~vg 552 (578)
.++. .|++|+++|
T Consensus 189 ~~~~-~Ga~g~~~g 201 (201)
T cd00945 189 AAIE-AGADGIGTS 201 (201)
T ss_pred HHHH-hccceeecC
Confidence 9986 899998754
No 315
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.45 E-value=0.00058 Score=66.78 Aligned_cols=50 Identities=32% Similarity=0.423 Sum_probs=42.3
Q ss_pred CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccc
Q 045794 339 DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAA 401 (578)
Q Consensus 339 ~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~ 401 (578)
.....+.++++.+.+ |+.+||||||.|. ++++.++|||.||+|+...+++
T Consensus 178 ~Pv~~e~v~~v~~~~--~LivGGGIrs~E~-----------A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 178 DPVPVEMVSRVLSDT--PLIVGGGIRSPEQ-----------AREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred CCcCHHHHHHhhccc--eEEEcCCcCCHHH-----------HHHHHHcCCCEEEECceeecCH
Confidence 345578888887654 9999999999865 9999999999999999998864
No 316
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.44 E-value=0.00077 Score=67.51 Aligned_cols=96 Identities=24% Similarity=0.212 Sum_probs=79.1
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 476 RPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 476 ~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
.+.++.++++.+++.|+..| ++..|+++-|-+++.++.+++.+++||+.-+.|-++.++.+... .|||+|+.--++
T Consensus 59 ~~~d~~~~A~~y~~~GA~aI---SVlTe~~~F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~-~GADavLLI~~~ 134 (247)
T PRK13957 59 ADYHPVQIAKTYETLGASAI---SVLTDQSYFGGSLEDLKSVSSELKIPVLRKDFILDEIQIREARA-FGASAILLIVRI 134 (247)
T ss_pred CCCCHHHHHHHHHHCCCcEE---EEEcCCCcCCCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHH-cCCCEEEeEHhh
Confidence 36789999999999999888 67778999999999999999999999999999999999999985 999998544433
Q ss_pred ccCCCCHHHHHHHHHhCCCee
Q 045794 556 HRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 556 ~~~~~~~~~~~~~l~~~~i~v 576 (578)
.. +-.+.++.+...+-|+++
T Consensus 135 L~-~~~l~~l~~~a~~lGle~ 154 (247)
T PRK13957 135 LT-PSQIKSFLKHASSLGMDV 154 (247)
T ss_pred CC-HHHHHHHHHHHHHcCCce
Confidence 32 223566666666667654
No 317
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.43 E-value=0.00054 Score=71.79 Aligned_cols=91 Identities=22% Similarity=0.244 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH-Hc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF-RS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l-~~ 386 (578)
+..++|+.+.+.|++.|++---... +......+++.++++++.+++||.+-|||++.+| +++++ ..
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh~r~~~--~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~d-----------a~~~l~~~ 214 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLHGRTRA--QGYSGEANWDIIARVKQAVRIPVIGNGDIFSPED-----------AKAMLETT 214 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEEccccc--ccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHH-----------HHHHHHhh
Confidence 5789999999999999987422221 1112356899999999999999999999999977 99999 57
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhC
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY 423 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (578)
|||-|.+|..++.+ |.+++++.+.+
T Consensus 215 gad~VmigR~~l~~------------P~l~~~~~~~~ 239 (319)
T TIGR00737 215 GCDGVMIGRGALGN------------PWLFRQIEQYL 239 (319)
T ss_pred CCCEEEEChhhhhC------------ChHHHHHHHHH
Confidence 89999999999985 35667776544
No 318
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=97.41 E-value=0.017 Score=57.44 Aligned_cols=190 Identities=12% Similarity=0.041 Sum_probs=119.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+..+..+++.+.|++++| +|+ |+..- .+-.--..+|+.+.+ ..|+.+===+.+.+ +-++.+.++
T Consensus 26 ~l~~el~~l~~~g~d~lH-iDVMDG~FV--PNitfGp~~i~~i~~--~~~~DvHLMv~~P~----------~~i~~~~~a 90 (228)
T PRK08091 26 KFNETLTTLSENQLRLLH-FDIADGQFS--PFFTVGAIAIKQFPT--HCFKDVHLMVRDQF----------EVAKACVAA 90 (228)
T ss_pred HHHHHHHHHHHCCCCEEE-EeccCCCcC--CccccCHHHHHHhCC--CCCEEEEeccCCHH----------HHHHHHHHh
Confidence 344566777778999999 555 44211 111222466788864 44544333344554 458889999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCC-CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN-QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
|||.|.+=.++..+.. +.++.+. +.|. -+.-++|..
T Consensus 91 Gad~It~H~Ea~~~~~-----------~~l~~Ik-~~g~~~kaGlalnP------------------------------- 127 (228)
T PRK08091 91 GADIVTLQVEQTHDLA-----------LTIEWLA-KQKTTVLIGLCLCP------------------------------- 127 (228)
T ss_pred CCCEEEEcccCcccHH-----------HHHHHHH-HCCCCceEEEEECC-------------------------------
Confidence 9999999877654321 4555654 4553 134444431
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHH---Hhh-----CCCcEEEecCCCCHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLI---SDA-----VSIPVIASSGAGAVEHF 537 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l---~~~-----~~ipVIasGGi~s~eDi 537 (578)
+ ++++.++.+.+. ++.|+++.++-....+.+.-+.++++ ++. .++.+-+=||| +.+.+
T Consensus 128 -----------~-Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti 193 (228)
T PRK08091 128 -----------E-TPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSM-TLELA 193 (228)
T ss_pred -----------C-CCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHH
Confidence 1 235555666654 89999999988766777654444443 322 14568999999 57889
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
.++.+ .||+.+++||++.+. -++++..+.|++
T Consensus 194 ~~l~~-aGaD~~V~GSalF~~-~d~~~~i~~l~~ 225 (228)
T PRK08091 194 SYLKQ-HQIDWVVSGSALFSQ-GELKTTLKEWKS 225 (228)
T ss_pred HHHHH-CCCCEEEEChhhhCC-CCHHHHHHHHHH
Confidence 99985 999999999998643 346666665554
No 319
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=97.41 E-value=0.0006 Score=64.09 Aligned_cols=71 Identities=23% Similarity=0.413 Sum_probs=50.6
Q ss_pred HHHHHHHHCCCeEEEeCCc------------------cCC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCC
Q 045794 62 SVRNAIRHLGFGIKDVQTP------------------EDI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDR 121 (578)
Q Consensus 62 ~i~~~L~~~Gv~v~~v~~~------------------~dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~ 121 (578)
...+.|.+.|+++.++... +++ .++|+||+|||... .... ....+.++|+++.+.++
T Consensus 17 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~-~~~~--~~~~l~~~l~~~~~~~~ 93 (166)
T TIGR01382 17 YPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAP-EYLR--LNNKAVRLVREFVEKGK 93 (166)
T ss_pred HHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCH-HHhc--cCHHHHHHHHHHHHcCC
Confidence 4466777888887766421 112 25899999998532 1111 11246788999999999
Q ss_pred CEEEEechHHHHhh
Q 045794 122 PFLGICLGLQLLFQ 135 (578)
Q Consensus 122 PIlGIClG~QlLa~ 135 (578)
|+.+||.|.++|+.
T Consensus 94 ~i~~ic~G~~~La~ 107 (166)
T TIGR01382 94 PVAAICHGPQLLIS 107 (166)
T ss_pred EEEEEChHHHHHHh
Confidence 99999999999998
No 320
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.0092 Score=58.39 Aligned_cols=190 Identities=17% Similarity=0.187 Sum_probs=123.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
...-+.++.+.+.|++++|+ |+ |+-.- .+-.--..+++++++.+..|+.+===|.+.+ .-++.+.+
T Consensus 16 ~~l~~el~~~~~agad~iH~-DVMDghFV--PNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~----------~~i~~fa~ 82 (220)
T COG0036 16 ARLGEELKALEAAGADLIHI-DVMDGHFV--PNITFGPPVVKALRKITDLPLDVHLMVENPD----------RYIEAFAK 82 (220)
T ss_pred hHHHHHHHHHHHcCCCEEEE-eccCCCcC--CCcccCHHHHHHHhhcCCCceEEEEecCCHH----------HHHHHHHH
Confidence 34557778888899999994 54 43210 1111124678888887677776544556654 46889999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||++|.+-.++-.+. .+.++.+ +..|. +.-+++.
T Consensus 83 agad~It~H~E~~~~~-----------~r~i~~I-k~~G~-kaGv~ln-------------------------------- 117 (220)
T COG0036 83 AGADIITFHAEATEHI-----------HRTIQLI-KELGV-KAGLVLN-------------------------------- 117 (220)
T ss_pred hCCCEEEEEeccCcCH-----------HHHHHHH-HHcCC-eEEEEEC--------------------------------
Confidence 9999999987754432 2455565 44563 2333332
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHH---HHHHHHhhCC----CcEEEecCCCCHHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMD---LIKLISDAVS----IPVIASSGAGAVEHFS 538 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~---li~~l~~~~~----ipVIasGGi~s~eDi~ 538 (578)
.-++++.++.+.+. ++.|+++.+.-.-..|-+--+ -++++++... +-+-+=||| +.+-+.
T Consensus 118 -----------P~Tp~~~i~~~l~~-vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~ 184 (220)
T COG0036 118 -----------PATPLEALEPVLDD-VDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGI-NLETIK 184 (220)
T ss_pred -----------CCCCHHHHHHHHhh-CCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHH
Confidence 11456666766665 899999999887666666544 4444444332 347888999 668899
Q ss_pred HHHHhcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
++.+ .|++-+++||++..+.. ..+..+.+
T Consensus 185 ~~~~-AGad~~VaGSalF~~~d-~~~~i~~~ 213 (220)
T COG0036 185 QLAA-AGADVFVAGSALFGADD-YKATIREL 213 (220)
T ss_pred HHHH-cCCCEEEEEEEEeCCcc-HHHHHHHH
Confidence 9875 99999999998876654 44433333
No 321
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.41 E-value=0.013 Score=58.41 Aligned_cols=188 Identities=15% Similarity=0.153 Sum_probs=116.1
Q ss_pred HHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 311 ELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
+-++.+.+ |++++| +|+ |+..- .+-.--.++++.+++.+.+|+.+===+.+.+ .-++.+.++||+
T Consensus 19 ~el~~l~~-g~d~lH-~DiMDG~FV--PN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~----------~~i~~~~~aGad 84 (229)
T PRK09722 19 EQIEFLNS-KADYFH-IDIMDGHFV--PNLTLSPFFVSQVKKLASKPLDVHLMVTDPQ----------DYIDQLADAGAD 84 (229)
T ss_pred HHHHHHHh-CCCEEE-EecccCccC--CCcccCHHHHHHHHhcCCCCeEEEEEecCHH----------HHHHHHHHcCCC
Confidence 34455555 999999 555 44221 1112235678888876666654433345554 358889999999
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTV 469 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (578)
.|.+-.++..+.+ ...++.+ ++.|. +.-++|..
T Consensus 85 ~it~H~Ea~~~~~----------~~~i~~I-k~~G~-kaGlalnP----------------------------------- 117 (229)
T PRK09722 85 FITLHPETINGQA----------FRLIDEI-RRAGM-KVGLVLNP----------------------------------- 117 (229)
T ss_pred EEEECccCCcchH----------HHHHHHH-HHcCC-CEEEEeCC-----------------------------------
Confidence 9999887653211 1345555 44563 45555531
Q ss_pred cccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHh---h-----CCCcEEEecCCCCHHHHHHHH
Q 045794 470 NGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISD---A-----VSIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 470 ~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~---~-----~~ipVIasGGi~s~eDi~~l~ 541 (578)
+ ++++.++.+.+. ++.|+++.+.-....+.+..+.++++++ . .++.+-+=|||. .+.+.++.
T Consensus 118 -------~-T~~~~l~~~l~~-vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~ 187 (229)
T PRK09722 118 -------E-TPVESIKYYIHL-LDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLM 187 (229)
T ss_pred -------C-CCHHHHHHHHHh-cCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHH
Confidence 1 234555555554 8999999998765666666555544433 2 135689999995 68899998
Q ss_pred HhcCchHHhhhhh-hccCCCCHHHHHHHHH
Q 045794 542 RKTNASAALAAGI-FHRKEVPIQSVKEHLY 570 (578)
Q Consensus 542 ~~~G~~gv~vgsa-~~~~~~~~~~~~~~l~ 570 (578)
+ .||+.+++||+ +....-++.+..+.|+
T Consensus 188 ~-aGad~~V~Gss~iF~~~~d~~~~i~~l~ 216 (229)
T PRK09722 188 E-AGADVFIVGTSGLFNLDEDIDEAWDIMT 216 (229)
T ss_pred H-cCCCEEEEChHHHcCCCCCHHHHHHHHH
Confidence 5 99999999954 5432333444444443
No 322
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.39 E-value=0.00051 Score=69.67 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCC-CCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPL-GDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~-~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.|.+.++.+.+..-..++++-..+..+... -.....+.|+++++.++.||.+||||++.++ ++++.+.
T Consensus 151 T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~-----------~~~~~~~ 219 (256)
T TIGR00262 151 ADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQ-----------VKQAIDA 219 (256)
T ss_pred CCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHH-----------HHHHHHc
Confidence 455666666666545788887766544321 1245688899999888999999999999866 9999999
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
|||.||+||+.++
T Consensus 220 GADgvVvGSaiv~ 232 (256)
T TIGR00262 220 GADGVIVGSAIVK 232 (256)
T ss_pred CCCEEEECHHHHH
Confidence 9999999999886
No 323
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=97.39 E-value=0.001 Score=69.38 Aligned_cols=78 Identities=26% Similarity=0.428 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
++.|+.+.+.|+|.|.+--.++ +++.+...++.+++++.+.+++||.+.|||.+.+| +.+++.+||+
T Consensus 119 ~~~a~~a~~~GaD~Ivv~g~ea--gGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~-----------~~~al~~GA~ 185 (307)
T TIGR03151 119 VALAKRMEKAGADAVIAEGMES--GGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRG-----------MAAAFALGAE 185 (307)
T ss_pred HHHHHHHHHcCCCEEEEECccc--CCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHH-----------HHHHHHcCCC
Confidence 4678899999999887744433 34444456899999999999999999999999876 9999999999
Q ss_pred eeecchhhhcc
Q 045794 390 KISIGSDAVYA 400 (578)
Q Consensus 390 ~vv~gt~~~~~ 400 (578)
-|.+||..+..
T Consensus 186 gV~iGt~f~~t 196 (307)
T TIGR03151 186 AVQMGTRFLCA 196 (307)
T ss_pred EeecchHHhcc
Confidence 99999987764
No 324
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.39 E-value=0.0005 Score=70.86 Aligned_cols=80 Identities=23% Similarity=0.322 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCcEEEEec-cCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 481 YELAKAVEDLGAGEILLNC-IDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~td-i~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
...+++++++|+ +.+.. -+--|+..|+ |.+.++.+.+..++||+..+||++++|+.++++ +|+|||+++|++...
T Consensus 208 ~~~a~~l~~~g~--~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Ame-lGadgVL~nSaIa~a 284 (326)
T PRK11840 208 PIAAKRLEDAGA--VAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAME-LGCDGVLMNTAIAEA 284 (326)
T ss_pred HHHHHHHHhcCC--EEEeeccccccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHH-cCCCEEEEcceeccC
Confidence 678999999999 55555 4556788887 899999999999999999999999999999996 999999999999865
Q ss_pred CCCHH
Q 045794 559 EVPIQ 563 (578)
Q Consensus 559 ~~~~~ 563 (578)
.-+..
T Consensus 285 ~dPv~ 289 (326)
T PRK11840 285 KNPVL 289 (326)
T ss_pred CCHHH
Confidence 55443
No 325
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=97.39 E-value=0.0016 Score=69.63 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCCcEEEEecc-------CCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhh
Q 045794 480 AYELAKAVEDLGAGEILLNCI-------DCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAA 552 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi-------~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vg 552 (578)
.+++++.+++. ++.+-+..- .......|+.+++.+++++.+++|||++|++.+++++.++++..++|.|++|
T Consensus 241 ~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~g 319 (370)
T cd02929 241 GVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAA 319 (370)
T ss_pred HHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeec
Confidence 45777778765 554433210 0011124567888899999999999999999999999999986679999999
Q ss_pred hhhccCCCCHHHHH
Q 045794 553 GIFHRKEVPIQSVK 566 (578)
Q Consensus 553 sa~~~~~~~~~~~~ 566 (578)
+++...+.-+..++
T Consensus 320 R~~ladP~l~~k~~ 333 (370)
T cd02929 320 RPSIADPFLPKKIR 333 (370)
T ss_pred hHhhhCchHHHHHH
Confidence 99998887665554
No 326
>PRK14057 epimerase; Provisional
Probab=97.38 E-value=0.013 Score=59.00 Aligned_cols=189 Identities=10% Similarity=0.012 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+--+.++.+++.|++++| +|+ |+..- .+-.--.++++.+.+ .+|+.+===+.+.+ .-++.+.++
T Consensus 33 ~L~~el~~l~~~g~d~lH-iDVMDG~FV--PNitfGp~~i~~i~~--~~p~DvHLMV~~P~----------~~i~~~~~a 97 (254)
T PRK14057 33 ALHRYLQQLEALNQPLLH-LDLMDGQFC--PQFTVGPWAVGQLPQ--TFIKDVHLMVADQW----------TAAQACVKA 97 (254)
T ss_pred HHHHHHHHHHHCCCCEEE-EeccCCccC--CccccCHHHHHHhcc--CCCeeEEeeeCCHH----------HHHHHHHHh
Confidence 334556777778999999 565 44211 111222467788865 35543322344554 358889999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC--------eEEEEEeccccccCCCCccccceeeeccCCCC
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ--------AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPN 458 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (578)
|||.|.+=.++..+.. ..++.+. ..|.+ +.-++|..
T Consensus 98 Gad~It~H~Ea~~~~~-----------~~l~~Ir-~~G~k~~~~~~~~kaGlAlnP------------------------ 141 (254)
T PRK14057 98 GAHCITLQAEGDIHLH-----------HTLSWLG-QQTVPVIGGEMPVIRGISLCP------------------------ 141 (254)
T ss_pred CCCEEEEeeccccCHH-----------HHHHHHH-HcCCCcccccccceeEEEECC------------------------
Confidence 9999999877654321 4455554 34532 23333321
Q ss_pred CCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHh---h---C--CCcEEEecC
Q 045794 459 GEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISD---A---V--SIPVIASSG 530 (578)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~---~---~--~ipVIasGG 530 (578)
+ ++++.++.+.+. ++.|+++.++-.-..+.+..+.++++++ . - ++.+-+=||
T Consensus 142 ------------------~-Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGG 201 (254)
T PRK14057 142 ------------------A-TPLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGS 201 (254)
T ss_pred ------------------C-CCHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECC
Confidence 1 345666666665 8999999998876667666554444432 2 1 356899999
Q ss_pred CCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 531 AGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 531 i~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
| +.+.+.++.+ .|++.+++||++... -++++..+.++
T Consensus 202 I-~~~ti~~l~~-aGad~~V~GSalF~~-~d~~~~i~~l~ 238 (254)
T PRK14057 202 L-TQDQLPSLIA-QGIDRVVSGSALFRD-DRLVENTRSWR 238 (254)
T ss_pred C-CHHHHHHHHH-CCCCEEEEChHhhCC-CCHHHHHHHHH
Confidence 9 5688999885 999999999998753 34444444443
No 327
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=97.37 E-value=0.0052 Score=65.26 Aligned_cols=75 Identities=24% Similarity=0.285 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCC-------C-------------CC-CHHHHHHHHhh-CCCcEEEecCCCCHHHHH
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQG-------K-------------GF-DMDLIKLISDA-VSIPVIASSGAGAVEHFS 538 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~-------~-------------G~-d~~li~~l~~~-~~ipVIasGGi~s~eDi~ 538 (578)
.+.++.+.+.|++.|.+... .|+. + |. -.+.+.++++. .++|||++|||++..|+.
T Consensus 200 ~~~a~~l~~~Gvd~I~Vsg~--GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~ 277 (352)
T PRK05437 200 KETAKRLADAGVKAIDVAGA--GGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIA 277 (352)
T ss_pred HHHHHHHHHcCCCEEEECCC--CCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHH
Confidence 68899999999999998664 2321 1 21 12466667776 489999999999999999
Q ss_pred HHHHhcCchHHhhhhhhccC
Q 045794 539 DVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~ 558 (578)
+++. .||++|.+|+++...
T Consensus 278 k~l~-~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 278 KALA-LGADAVGMAGPFLKA 296 (352)
T ss_pred HHHH-cCCCEEEEhHHHHHH
Confidence 9996 899999999987654
No 328
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=97.36 E-value=0.00064 Score=70.56 Aligned_cols=87 Identities=25% Similarity=0.346 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEe--------cccC-------CCCCCC---CchhHHHHHHHhhhccccEEEeCCcccccc
Q 045794 307 GKPVELARQYYKEGADEISFLN--------ITGF-------RDFPLG---DLPMLQVLRLTSENVFVPLTVGGGIRDFTD 368 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~D--------l~~~-------~~~~~~---~~~~~~~i~~i~~~~~~pi~~gGGir~~~d 368 (578)
.+..++|+.+.+.|++.|++.+ +... .++..+ ....++.++++++.+++||..-|||++.+|
T Consensus 169 ~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~d 248 (300)
T TIGR01037 169 TDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFED 248 (300)
T ss_pred hhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHH
Confidence 4678999999999999999853 2110 011101 112357889999989999999999999977
Q ss_pred CCCCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 369 ANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
+.+++.+|||-|.+|+.++.++ +++
T Consensus 249 -----------a~~~l~~GAd~V~igr~~l~~p-~~~ 273 (300)
T TIGR01037 249 -----------ALEFLMAGASAVQVGTAVYYRG-FAF 273 (300)
T ss_pred -----------HHHHHHcCCCceeecHHHhcCc-hHH
Confidence 9999999999999999999864 443
No 329
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.35 E-value=0.00058 Score=71.68 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCC------CCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFP------LGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~------~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
.+.+++++.+.+.|++.|++..-....... .....+++.++++++.+++||.+.|||++.++ +
T Consensus 228 ~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~-----------a 296 (327)
T cd02803 228 EEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEV-----------A 296 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHH-----------H
Confidence 467889999999999999986554321110 11245678899999989999999999999876 9
Q ss_pred HHHHHc-Ccceeecchhhhcc
Q 045794 381 SEYFRS-GADKISIGSDAVYA 400 (578)
Q Consensus 381 ~~~l~~-Ga~~vv~gt~~~~~ 400 (578)
+++++. |||.|.+|+.++.+
T Consensus 297 ~~~l~~g~aD~V~igR~~lad 317 (327)
T cd02803 297 EEILAEGKADLVALGRALLAD 317 (327)
T ss_pred HHHHHCCCCCeeeecHHHHhC
Confidence 999998 79999999999985
No 330
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.35 E-value=0.0016 Score=63.50 Aligned_cols=179 Identities=15% Similarity=0.195 Sum_probs=113.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+..+.++.+.+.|++++| +|+ |+..- .+-.-..+.++.|++.+.+|+.+===+.+.++ -++.+.+
T Consensus 12 ~~l~~~i~~l~~~g~d~lH-iDiMDg~fv--pn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~----------~i~~~~~ 78 (201)
T PF00834_consen 12 LNLEEEIKRLEEAGADWLH-IDIMDGHFV--PNLTFGPDIIKAIRKITDLPLDVHLMVENPER----------YIEEFAE 78 (201)
T ss_dssp GGHHHHHHHHHHTT-SEEE-EEEEBSSSS--SSB-B-HHHHHHHHTTSSSEEEEEEESSSGGG----------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEE-EeecccccC--CcccCCHHHHHHHhhcCCCcEEEEeeeccHHH----------HHHHHHh
Confidence 3556778888889999999 455 44321 12234578899998888777766445556654 5899999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|++.|.+=.++..+.. ++++.+.+ .|. +.-++|....
T Consensus 79 ~g~~~i~~H~E~~~~~~-----------~~i~~ik~-~g~-k~GialnP~T----------------------------- 116 (201)
T PF00834_consen 79 AGADYITFHAEATEDPK-----------ETIKYIKE-AGI-KAGIALNPET----------------------------- 116 (201)
T ss_dssp HT-SEEEEEGGGTTTHH-----------HHHHHHHH-TTS-EEEEEE-TTS-----------------------------
T ss_pred cCCCEEEEcccchhCHH-----------HHHHHHHH-hCC-CEEEEEECCC-----------------------------
Confidence 99999999877666432 45666544 563 5566665321
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHH---HHHhh-----CCCcEEEecCCCCHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIK---LISDA-----VSIPVIASSGAGAVEHF 537 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~---~l~~~-----~~ipVIasGGi~s~eDi 537 (578)
+++.++.+.+ -++.|+++.+.-....+.+.-+.++ ++++. .++.+.+=||| +.+.+
T Consensus 117 --------------~~~~~~~~l~-~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI-~~~~~ 180 (201)
T PF00834_consen 117 --------------PVEELEPYLD-QVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGI-NEENI 180 (201)
T ss_dssp ---------------GGGGTTTGC-CSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSE-STTTH
T ss_pred --------------CchHHHHHhh-hcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCC-CHHHH
Confidence 2223333334 3899999999875555555433333 33332 24789999999 55889
Q ss_pred HHHHHhcCchHHhhhhhhcc
Q 045794 538 SDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~ 557 (578)
.++.+ .|++.+++||++..
T Consensus 181 ~~~~~-aGad~~V~Gs~iF~ 199 (201)
T PF00834_consen 181 KQLVE-AGADIFVAGSAIFK 199 (201)
T ss_dssp HHHHH-HT--EEEESHHHHT
T ss_pred HHHHH-cCCCEEEECHHHhC
Confidence 99985 99999999998864
No 331
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.35 E-value=0.00083 Score=69.77 Aligned_cols=87 Identities=24% Similarity=0.312 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEeccc-C--------------CCCC---CCCchhHHHHHHHhhhccccEEEeCCcccccc
Q 045794 307 GKPVELARQYYKEGADEISFLNITG-F--------------RDFP---LGDLPMLQVLRLTSENVFVPLTVGGGIRDFTD 368 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~-~--------------~~~~---~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d 368 (578)
.+..++|+.+.+.|++.|++++-.. . .++. ......++.++++++.+++||..-|||++.+|
T Consensus 169 ~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 169 TDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 3788999999999999998864211 0 0000 01123578899999989999999999999977
Q ss_pred CCCCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 369 ANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
+.+++.+|||-|.+++.++.+ |+++
T Consensus 249 -----------a~~~l~aGAd~V~igr~ll~~-P~~~ 273 (301)
T PRK07259 249 -----------AIEFIMAGASAVQVGTANFYD-PYAF 273 (301)
T ss_pred -----------HHHHHHcCCCceeEcHHHhcC-cHHH
Confidence 999999999999999999984 4443
No 332
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=97.35 E-value=0.00048 Score=72.38 Aligned_cols=76 Identities=24% Similarity=0.302 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCC-------C---------------CCC-HHHHHHHHhhC-CCcEEEecCCCCHHH
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQG-------K---------------GFD-MDLIKLISDAV-SIPVIASSGAGAVEH 536 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~-------~---------------G~d-~~li~~l~~~~-~ipVIasGGi~s~eD 536 (578)
.+.++.+++.|++.|.+... .|+. . |.. .+.+.++++.+ ++|||++|||++..|
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~--GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~d 269 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGA--GGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLD 269 (326)
T ss_pred HHHHHHHHHcCCCEEEECCC--CCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHH
Confidence 68899999999999998763 2211 1 111 25667777766 899999999999999
Q ss_pred HHHHHHhcCchHHhhhhhhccCC
Q 045794 537 FSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 537 i~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
+.+++. .||++|.+|+++....
T Consensus 270 v~kal~-lGAd~V~i~~~~L~~~ 291 (326)
T cd02811 270 IAKALA-LGADLVGMAGPFLKAA 291 (326)
T ss_pred HHHHHH-hCCCEEEEcHHHHHHH
Confidence 999996 8999999999875543
No 333
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.30 E-value=0.0066 Score=62.43 Aligned_cols=212 Identities=16% Similarity=0.201 Sum_probs=121.8
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
...+.+.-++.+++-|.-+--.... -..+...-...++.++++.+ +||.+ ..+ |..+++.+++.++.|
T Consensus 29 ~~avi~aAe~~~~PvIl~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~vpv~l-----hlD-----H~~~~e~i~~ai~~G 97 (282)
T TIGR01859 29 TQAILEAAEEENSPVIIQVSEGAIK-YMGGYKMAVAMVKTLIERMSIVPVAL-----HLD-----HGSSYESCIKAIKAG 97 (282)
T ss_pred HHHHHHHHHHhCCCEEEEcCcchhh-ccCcHHHHHHHHHHHHHHCCCCeEEE-----ECC-----CCCCHHHHHHHHHcC
Confidence 3345555556666644433222221 00112345567788888888 89864 222 344577899999999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
++.|.+....+.. .+.++ ...-+.+++..||- .|-.-+..-. |++ .
T Consensus 98 f~sVmid~s~l~~-~eni~-----~t~~v~~~a~~~gv-~Ve~ElG~~g----------------------g~e----d- 143 (282)
T TIGR01859 98 FSSVMIDGSHLPF-EENLA-----LTKKVVEIAHAKGV-SVEAELGTLG----------------------GIE----D- 143 (282)
T ss_pred CCEEEECCCCCCH-HHHHH-----HHHHHHHHHHHcCC-EEEEeeCCCc----------------------Ccc----c-
Confidence 9999995544432 22221 01223344466762 2333232111 100 0
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC---CCCCHHHHHHHHhhCCCcEEEec--CCCCHHHHHHHHH
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG---KGFDMDLIKLISDAVSIPVIASS--GAGAVEHFSDVFR 542 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~---~G~d~~li~~l~~~~~ipVIasG--Gi~s~eDi~~l~~ 542 (578)
.+.| ...+--++.+..+..++.|++.+.+--=+.-|+. ...+++.++++++.+++|+++-| |+ +.++++++.+
T Consensus 144 ~~~g-~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi-~~e~i~~~i~ 221 (282)
T TIGR01859 144 GVDE-KEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGI-PEEQIKKAIK 221 (282)
T ss_pred cccc-cccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHH
Confidence 0011 1111225666555555689998874211111222 34699999999999999999999 88 5588999986
Q ss_pred hcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 543 KTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.|++++-+++.+...- ...+++++.
T Consensus 222 -~Gi~kiNv~T~l~~a~--~~~~~~~~~ 246 (282)
T TIGR01859 222 -LGIAKINIDTDCRIAF--TAAIRKVLT 246 (282)
T ss_pred -cCCCEEEECcHHHHHH--HHHHHHHHH
Confidence 8999999999775322 445555554
No 334
>PLN02535 glycolate oxidase
Probab=97.30 E-value=0.0011 Score=70.36 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC---CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF---DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~---d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
.+-++.+.+.|++.|++.+.. |+..+. -++.+.++.+.+ .+|||+.|||++..|+.+++. +||++|++|+++
T Consensus 234 ~~dA~~a~~~GvD~I~vsn~G--Gr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALa-lGA~aV~vGr~~ 310 (364)
T PLN02535 234 REDAIKAVEVGVAGIIVSNHG--ARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALA-LGAQAVLVGRPV 310 (364)
T ss_pred HHHHHHHHhcCCCEEEEeCCC--cCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHH-cCCCEEEECHHH
Confidence 355889999999999987643 333222 257777777665 699999999999999999995 999999999999
Q ss_pred ccC
Q 045794 556 HRK 558 (578)
Q Consensus 556 ~~~ 558 (578)
..+
T Consensus 311 l~~ 313 (364)
T PLN02535 311 IYG 313 (364)
T ss_pred Hhh
Confidence 765
No 335
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.28 E-value=0.003 Score=61.32 Aligned_cols=162 Identities=19% Similarity=0.278 Sum_probs=105.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++++.+.+.|.+-+=|. ++. ..-++.|++++++.. -+.+| |.|.+.++ +++..+
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT-~~t--------~~a~~~I~~l~~~~p-~~~vGAGTV~~~e~-----------a~~a~~ 78 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEIT-LRT--------PNALEAIEALRKEFP-DLLVGAGTVLTAEQ-----------AEAAIA 78 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEE-TTS--------TTHHHHHHHHHHHHT-TSEEEEES--SHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEe-cCC--------ccHHHHHHHHHHHCC-CCeeEEEeccCHHH-----------HHHHHH
Confidence 578899999999998754433 222 224788999988775 36677 77888765 999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.++-=. + |+++++.. .+++- -.
T Consensus 79 aGA~FivSP~--~-------------~~~v~~~~-~~~~i-~~------------------------------------- 104 (196)
T PF01081_consen 79 AGAQFIVSPG--F-------------DPEVIEYA-REYGI-PY------------------------------------- 104 (196)
T ss_dssp HT-SEEEESS-----------------HHHHHHH-HHHTS-EE-------------------------------------
T ss_pred cCCCEEECCC--C-------------CHHHHHHH-HHcCC-cc-------------------------------------
Confidence 9999776431 2 23555554 45541 11
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
+.| -.++-|+ ..+.++|++.+=+...+.-| | ...++.++.-. ++|+++.|||. .+.+.+.++ .
T Consensus 105 ---iPG-----~~TptEi-~~A~~~G~~~vK~FPA~~~G---G--~~~ik~l~~p~p~~~~~ptGGV~-~~N~~~~l~-a 168 (196)
T PF01081_consen 105 ---IPG-----VMTPTEI-MQALEAGADIVKLFPAGALG---G--PSYIKALRGPFPDLPFMPTGGVN-PDNLAEYLK-A 168 (196)
T ss_dssp ---EEE-----ESSHHHH-HHHHHTT-SEEEETTTTTTT---H--HHHHHHHHTTTTT-EEEEBSS---TTTHHHHHT-S
T ss_pred ---cCC-----cCCHHHH-HHHHHCCCCEEEEecchhcC---c--HHHHHHHhccCCCCeEEEcCCCC-HHHHHHHHh-C
Confidence 111 1234444 45568999999999876543 2 36788887755 69999999995 589999995 9
Q ss_pred CchHHhhhhhhccCC
Q 045794 545 NASAALAAGIFHRKE 559 (578)
Q Consensus 545 G~~gv~vgsa~~~~~ 559 (578)
|+.++.+||.+....
T Consensus 169 g~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 169 GAVAVGGGSWLFPKD 183 (196)
T ss_dssp TTBSEEEESGGGSHH
T ss_pred CCEEEEECchhcCHH
Confidence 999999999887543
No 336
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.27 E-value=0.0021 Score=64.05 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCC--chhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGD--LPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~--~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
.+.++.+.+.|++.|++..... +++... ...++.++++++.+++|+.++|||++.+| ++++++.|
T Consensus 112 ~~~~~~~~~~gad~i~~~~~~~--~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~-----------v~~~l~~G 178 (236)
T cd04730 112 VEEARKAEAAGADALVAQGAEA--GGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRG-----------IAAALALG 178 (236)
T ss_pred HHHHHHHHHcCCCEEEEeCcCC--CCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHH-----------HHHHHHcC
Confidence 3667778889999888765421 222221 24578899998888999999999999866 99999999
Q ss_pred cceeecchhhhccc
Q 045794 388 ADKISIGSDAVYAA 401 (578)
Q Consensus 388 a~~vv~gt~~~~~~ 401 (578)
|+.|++||..+...
T Consensus 179 adgV~vgS~l~~~~ 192 (236)
T cd04730 179 ADGVQMGTRFLATE 192 (236)
T ss_pred CcEEEEchhhhcCc
Confidence 99999999988753
No 337
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=97.27 E-value=0.00095 Score=63.61 Aligned_cols=77 Identities=25% Similarity=0.358 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
+|=+..-.+.|+|.|- .=|.+......+.++++++++++++. .+||..-|+|.+.++ +++.+++||.
T Consensus 102 ~ee~~~A~~~G~D~I~-TTLsGYT~~t~~~~pD~~lv~~l~~~-~~pvIaEGri~tpe~-----------a~~al~~GA~ 168 (192)
T PF04131_consen 102 LEEAINAAELGFDIIG-TTLSGYTPYTKGDGPDFELVRELVQA-DVPVIAEGRIHTPEQ-----------AAKALELGAH 168 (192)
T ss_dssp HHHHHHHHHTT-SEEE--TTTTSSTTSTTSSHHHHHHHHHHHT-TSEEEEESS--SHHH-----------HHHHHHTT-S
T ss_pred HHHHHHHHHcCCCEEE-cccccCCCCCCCCCCCHHHHHHHHhC-CCcEeecCCCCCHHH-----------HHHHHhcCCe
Confidence 3556677789999665 45888655444578999999999986 899999999999976 9999999999
Q ss_pred eeecchhhhc
Q 045794 390 KISIGSDAVY 399 (578)
Q Consensus 390 ~vv~gt~~~~ 399 (578)
-|++||+--.
T Consensus 169 aVVVGsAITr 178 (192)
T PF04131_consen 169 AVVVGSAITR 178 (192)
T ss_dssp EEEE-HHHH-
T ss_pred EEEECcccCC
Confidence 9999997554
No 338
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=97.26 E-value=0.0012 Score=65.55 Aligned_cols=77 Identities=26% Similarity=0.310 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.|| ..|+++.+.|++-+.-. .+=+. . ..-.|.+.|+.+.+..++||.++|||.+.+| +.+.++
T Consensus 132 dd~-~~ar~l~~~G~~~vmPlg~pIGs---g-~Gi~~~~~I~~I~e~~~vpVI~egGI~tped-----------a~~Ame 195 (248)
T cd04728 132 DDP-VLAKRLEDAGCAAVMPLGSPIGS---G-QGLLNPYNLRIIIERADVPVIVDAGIGTPSD-----------AAQAME 195 (248)
T ss_pred CCH-HHHHHHHHcCCCEeCCCCcCCCC---C-CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHH-----------HHHHHH
Confidence 455 78899999999987430 11121 1 1133688889998888899999999999987 999999
Q ss_pred cCcceeecchhhhc
Q 045794 386 SGADKISIGSDAVY 399 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~ 399 (578)
+||+.|++||+..+
T Consensus 196 lGAdgVlV~SAIt~ 209 (248)
T cd04728 196 LGADAVLLNTAIAK 209 (248)
T ss_pred cCCCEEEEChHhcC
Confidence 99999999998876
No 339
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=97.24 E-value=0.0011 Score=65.66 Aligned_cols=76 Identities=21% Similarity=0.170 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCCeEEEE--ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 311 ELARQYYKEGADEISFL--NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~--Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
+.++...+.|++.+.+- ++.+... .....+...++++.+.+++|+.++|||++.+| ++++++.||
T Consensus 130 ee~~~a~~~G~d~i~~~~~g~t~~~~--~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~-----------~~~~l~~Ga 196 (221)
T PRK01130 130 EEGLAAQKLGFDFIGTTLSGYTEETK--KPEEPDFALLKELLKAVGCPVIAEGRINTPEQ-----------AKKALELGA 196 (221)
T ss_pred HHHHHHHHcCCCEEEcCCceeecCCC--CCCCcCHHHHHHHHHhCCCCEEEECCCCCHHH-----------HHHHHHCCC
Confidence 34577888999977531 2322111 12245688999999988999999999999876 999999999
Q ss_pred ceeecchhhhc
Q 045794 389 DKISIGSDAVY 399 (578)
Q Consensus 389 ~~vv~gt~~~~ 399 (578)
+.|++||+..+
T Consensus 197 dgV~iGsai~~ 207 (221)
T PRK01130 197 HAVVVGGAITR 207 (221)
T ss_pred CEEEEchHhcC
Confidence 99999998776
No 340
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.24 E-value=0.00062 Score=65.13 Aligned_cols=65 Identities=18% Similarity=0.299 Sum_probs=44.0
Q ss_pred HHCCCeEEEeCCccCC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 68 RHLGFGIKDVQTPEDI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 68 ~~~Gv~v~~v~~~~dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
...|..+..-...+++ ..||+|++|||..... . .....+.++++++.+.++||.|||.|.++|+.
T Consensus 57 ~~~g~~i~~~~~~~~~~~~~~D~liv~GG~~~~~-~--~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~ 123 (180)
T cd03169 57 EKPGHRFAVTADFDEVDPDDYDALVIPGGRAPEY-L--RLDEKVLAIVRHFAEANKPVAAICHGPQILAA 123 (180)
T ss_pred ccCCcEEeccCCcccCCHhHCCEEEEcCCCChhh-h--ccCHHHHHHHHHHHHcCCEEEEECcHHHHHHH
Confidence 3445554432222332 3689999999853221 1 11124678899999999999999999999998
No 341
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.23 E-value=0.0049 Score=62.92 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCC--CHHHHHHHH----HhcCchHHhhhhh
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAG--AVEHFSDVF----RKTNASAALAAGI 554 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~--s~eDi~~l~----~~~G~~gv~vgsa 554 (578)
...++.+.+.|++.|=. + .. .+.++++++.+...+||+++|||+ +.+++.+.. + .|++|+++|++
T Consensus 163 ~~a~~~a~e~GAD~vKt-~------~~-~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~-aGA~Gis~gr~ 233 (267)
T PRK07226 163 AHAARVAAELGADIVKT-N------YT-GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAME-AGAAGVAVGRN 233 (267)
T ss_pred HHHHHHHHHHCCCEEee-C------CC-CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHH-cCCcEEehhhh
Confidence 45568888999998832 2 11 268999999887889999999999 777766664 4 89999999999
Q ss_pred hccCCC
Q 045794 555 FHRKEV 560 (578)
Q Consensus 555 ~~~~~~ 560 (578)
+.+.+.
T Consensus 234 i~~~~~ 239 (267)
T PRK07226 234 VFQHED 239 (267)
T ss_pred hhcCCC
Confidence 987765
No 342
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.22 E-value=0.0034 Score=63.76 Aligned_cols=78 Identities=14% Similarity=0.222 Sum_probs=59.2
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCC--C----HHHHHHHHHhcCchHHhhhhhh
Q 045794 482 ELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAG--A----VEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 482 e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~--s----~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
..++.+.+.|++.|-+. . ..+++.++++.+.+.+||+++|||+ + .+.+.++.+ .|++|+++++++
T Consensus 160 ~~~~~a~~~GADyikt~-------~-~~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~-aGa~Gia~g~~i 230 (258)
T TIGR01949 160 HAARLGAELGADIVKTP-------Y-TGDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAME-AGAAGVAVGRNI 230 (258)
T ss_pred HHHHHHHHHCCCEEecc-------C-CCCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHH-cCCcEEehhhHh
Confidence 34678889999988742 1 1378999999988899999999999 5 555666665 999999999999
Q ss_pred ccCCCCHHHHHHHH
Q 045794 556 HRKEVPIQSVKEHL 569 (578)
Q Consensus 556 ~~~~~~~~~~~~~l 569 (578)
.+.+- +.+..+.|
T Consensus 231 ~~~~d-p~~~~~~l 243 (258)
T TIGR01949 231 FQHDD-PVGITKAV 243 (258)
T ss_pred hcCCC-HHHHHHHH
Confidence 87765 44444333
No 343
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=97.22 E-value=0.00094 Score=69.36 Aligned_cols=93 Identities=20% Similarity=0.296 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEE---------ecccCC-----------CCCCC---CchhHHHHHHHhhhc--cccEEEeC
Q 045794 307 GKPVELARQYYKEGADEISFL---------NITGFR-----------DFPLG---DLPMLQVLRLTSENV--FVPLTVGG 361 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~---------Dl~~~~-----------~~~~~---~~~~~~~i~~i~~~~--~~pi~~gG 361 (578)
.+..++|+.+.+.|++.|.++ |++..+ ++..+ ....++.|+++++.+ .+||..-|
T Consensus 180 ~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~G 259 (299)
T cd02940 180 TDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIG 259 (299)
T ss_pred hhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEEC
Confidence 478899999999999999864 332210 11111 123489999999999 89999999
Q ss_pred CccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 362 GIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 362 Gir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
||++.+| +.+++.+||+-|-++|+++.+. |+.+.++.+
T Consensus 260 GI~~~~d-----------a~~~l~aGA~~V~i~ta~~~~g-----------~~~~~~i~~ 297 (299)
T cd02940 260 GIESWED-----------AAEFLLLGASVVQVCTAVMNQG-----------FTIVDDMCT 297 (299)
T ss_pred CCCCHHH-----------HHHHHHcCCChheEceeecccC-----------CcHHHHHhh
Confidence 9999987 8889999999999999999853 466677654
No 344
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=97.20 E-value=0.0014 Score=66.84 Aligned_cols=97 Identities=12% Similarity=0.160 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCC---CCCCHHHHHHHHhhCCCcEEEecCCCCHHHH-----------HHHHHhc
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQG---KGFDMDLIKLISDAVSIPVIASSGAGAVEHF-----------SDVFRKT 544 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~---~G~d~~li~~l~~~~~ipVIasGGi~s~eDi-----------~~l~~~~ 544 (578)
.++++++++.+.|++++.+.+|+.=-.. .-|-++.+++.++.+.+|+.++|||++..|. ...+ ..
T Consensus 270 KPV~Laq~Yyq~GADEv~FLNITsFRdcPl~D~PMlqVL~qaaktVFVPLTVGGGIrD~~D~dGt~~palEVA~~YF-RS 348 (541)
T KOG0623|consen 270 KPVDLAQQYYQDGADEVSFLNITSFRDCPLGDLPMLQVLRQAAKTVFVPLTVGGGIRDFTDADGTYYPALEVAAEYF-RS 348 (541)
T ss_pred ChHHHHHHHHhcCCceeEEEeeccccCCCcccChHHHHHHHhhceEEEEEeecCcccccccCCCcCchhHHHHHHHH-hc
Confidence 4899999999999999999998642222 2234566677777778999999999987663 2334 37
Q ss_pred CchHHhhhhhh-c------------cCCCCHHHHHHHHHhCCCee
Q 045794 545 NASAALAAGIF-H------------RKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 545 G~~gv~vgsa~-~------------~~~~~~~~~~~~l~~~~i~v 576 (578)
|+|.|.|||-. + .|.-+++.+.+....|.+.+
T Consensus 349 GADKvSIGsDAVyAAEkyye~G~k~~Gks~iEtISkaYGnQAVVi 393 (541)
T KOG0623|consen 349 GADKVSIGSDAVYAAEKYYESGVKGTGKSSIETISKAYGNQAVVI 393 (541)
T ss_pred CCceeeechhHHHHHHHHHHhccCCCCcChHHHHHHHhCCeeEEE
Confidence 99999988822 2 34556777777766665533
No 345
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.18 E-value=0.0033 Score=65.73 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=105.0
Q ss_pred HHHHHHHHcCcceee--cchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccC
Q 045794 378 EVASEYFRSGADKIS--IGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDL 455 (578)
Q Consensus 378 ~~~~~~l~~Ga~~vv--~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~ 455 (578)
+.++++.+.|.+.+= +|...-. ..+.++.+.+.+| .+.+++|+..+
T Consensus 140 ~~~~~~~~~Gf~~iKik~g~~~~~------------d~~~v~~lr~~~g--~~~l~vD~n~~------------------ 187 (316)
T cd03319 140 AAAKKAAKRGFPLLKIKLGGDLED------------DIERIRAIREAAP--DARLRVDANQG------------------ 187 (316)
T ss_pred HHHHHHHHcCCCEEEEEeCCChhh------------HHHHHHHHHHhCC--CCeEEEeCCCC------------------
Confidence 567778888875443 3432111 1377889989898 46788996432
Q ss_pred CCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHH
Q 045794 456 GPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVE 535 (578)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~e 535 (578)
|.. -+..++++.++++++..+ +.-+...|++.++++++.+++||++++.+.+.+
T Consensus 188 ----------------~~~---~~A~~~~~~l~~~~l~~i-------EeP~~~~d~~~~~~L~~~~~ipIa~~E~~~~~~ 241 (316)
T cd03319 188 ----------------WTP---EEAVELLRELAELGVELI-------EQPVPAGDDDGLAYLRDKSPLPIMADESCFSAA 241 (316)
T ss_pred ----------------cCH---HHHHHHHHHHHhcCCCEE-------ECCCCCCCHHHHHHHHhcCCCCEEEeCCCCCHH
Confidence 322 146788999999887655 334455689999999999999999999999999
Q ss_pred HHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 536 HFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 536 Di~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+++++++..+++.+.+--....|.....++.+.+...|++|
T Consensus 242 ~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~ 282 (316)
T cd03319 242 DAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKV 282 (316)
T ss_pred HHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCE
Confidence 99999986778888766555566667788888999999876
No 346
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.18 E-value=0.0016 Score=69.32 Aligned_cols=75 Identities=20% Similarity=0.161 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC--CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhh
Q 045794 478 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGF--DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 478 ~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~--d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa 554 (578)
.+..++++.+.+.|++.|.++..+++..+.+. |+..+.++.+..++|||+ |+|.+.++.+++.+ +|||+|++|..
T Consensus 141 ~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~~-aGAD~V~VG~G 217 (368)
T PRK08649 141 QRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV-GGCVTYTTALHLMR-TGAAGVLVGIG 217 (368)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHH-cCCCEEEECCC
Confidence 35789999999999999999998888766543 688788887778999999 88999999999996 99999999854
No 347
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=97.17 E-value=0.00078 Score=71.02 Aligned_cols=75 Identities=24% Similarity=0.239 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCC----------C----C--CCH-----HHHHHHHh-hCCCcEEEecCCCCHHHH
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQG----------K----G--FDM-----DLIKLISD-AVSIPVIASSGAGAVEHF 537 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~----------~----G--~d~-----~li~~l~~-~~~ipVIasGGi~s~eDi 537 (578)
..+.++.+++.|++.|.+... .|+. . . .|| +.+.++++ ..++|||++|||++.+|+
T Consensus 192 ~~~~a~~L~~aGvd~I~Vsg~--gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di 269 (333)
T TIGR02151 192 SKEVAKLLADAGVSAIDVAGA--GGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDV 269 (333)
T ss_pred CHHHHHHHHHcCCCEEEECCC--CCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHH
Confidence 368999999999999998763 2321 1 0 122 35555555 458999999999999999
Q ss_pred HHHHHhcCchHHhhhhhhcc
Q 045794 538 SDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+++. .||++|++|+++..
T Consensus 270 ~kaLa-lGAd~V~igr~~L~ 288 (333)
T TIGR02151 270 AKAIA-LGADAVGMARPFLK 288 (333)
T ss_pred HHHHH-hCCCeehhhHHHHH
Confidence 99996 89999999998873
No 348
>PRK00208 thiG thiazole synthase; Reviewed
Probab=97.17 E-value=0.0013 Score=65.23 Aligned_cols=76 Identities=26% Similarity=0.309 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHcCCCeEEE--EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISF--LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~--~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.|| ..|+++.+.|++-|.- --+ +. . ..-.|.+.|+.+.+..++||.++|||.+.+| +.+.+
T Consensus 132 ~d~-~~ak~l~~~G~~~vmPlg~pI-Gs---g-~gi~~~~~i~~i~e~~~vpVIveaGI~tped-----------a~~Am 194 (250)
T PRK00208 132 DDP-VLAKRLEEAGCAAVMPLGAPI-GS---G-LGLLNPYNLRIIIEQADVPVIVDAGIGTPSD-----------AAQAM 194 (250)
T ss_pred CCH-HHHHHHHHcCCCEeCCCCcCC-CC---C-CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHH-----------HHHHH
Confidence 455 7788899999998743 122 21 1 1133577788888878899999999999987 99999
Q ss_pred HcCcceeecchhhhc
Q 045794 385 RSGADKISIGSDAVY 399 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~ 399 (578)
++|||.|++||+..+
T Consensus 195 elGAdgVlV~SAItk 209 (250)
T PRK00208 195 ELGADAVLLNTAIAV 209 (250)
T ss_pred HcCCCEEEEChHhhC
Confidence 999999999998886
No 349
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=97.17 E-value=0.0018 Score=60.75 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=50.3
Q ss_pred HHHHHHHHCCCeEEEeCCc--------------------cCC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhC
Q 045794 62 SVRNAIRHLGFGIKDVQTP--------------------EDI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEK 119 (578)
Q Consensus 62 ~i~~~L~~~Gv~v~~v~~~--------------------~dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~ 119 (578)
.+.+.|+..|+++.++... ++. .++|+|++|||... ..+. ....+.++|+++.+.
T Consensus 17 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~-~~~~--~~~~~~~~l~~~~~~ 93 (165)
T cd03134 17 YPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNP-DKLR--RDPDAVAFVRAFAEA 93 (165)
T ss_pred HHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCCh-hhhc--cCHHHHHHHHHHHHc
Confidence 3456677778777766422 111 25899999998632 1111 122567899999999
Q ss_pred CCCEEEEechHHHHhh
Q 045794 120 DRPFLGICLGLQLLFQ 135 (578)
Q Consensus 120 g~PIlGIClG~QlLa~ 135 (578)
++||.+||.|.++|+.
T Consensus 94 ~~~i~~ic~G~~~La~ 109 (165)
T cd03134 94 GKPVAAICHGPWVLIS 109 (165)
T ss_pred CCeEEEEchHHHHHHh
Confidence 9999999999999998
No 350
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.17 E-value=0.0011 Score=66.73 Aligned_cols=81 Identities=21% Similarity=0.241 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..|.+..+.+.+...+.++++-..+..++... .....+.|+++++..++||.+||||++.++ ++++.+
T Consensus 139 ~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~-----------~~~~~~ 207 (242)
T cd04724 139 TTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQ-----------AAEVAK 207 (242)
T ss_pred CCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHH-----------HHHHHc
Confidence 35677788888767788999888875543321 234568889998888999999999999865 999999
Q ss_pred cCcceeecchhhhc
Q 045794 386 SGADKISIGSDAVY 399 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~ 399 (578)
+ ||.+|+||+.++
T Consensus 208 ~-ADgvVvGSaiv~ 220 (242)
T cd04724 208 Y-ADGVIVGSALVK 220 (242)
T ss_pred c-CCEEEECHHHHH
Confidence 9 999999998876
No 351
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=97.17 E-value=0.0024 Score=58.41 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=60.2
Q ss_pred EEEEEECCC---CCHHHHHHHHHHCCCeEEEeCCc------------------cCC--CCCCEEEECCCCCchHHHHHHH
Q 045794 49 VVTLLDYGA---GNVRSVRNAIRHLGFGIKDVQTP------------------EDI--LNANRLIFPGVGAFAAAMDVLN 105 (578)
Q Consensus 49 ~I~vld~~~---g~~~~i~~~L~~~Gv~v~~v~~~------------------~dl--~~~DGlILpGGg~~~~~~~~l~ 105 (578)
+|+|+=++. .-...+.+.|+..|+++.++... ++. .++|+||+|||....... ..
T Consensus 3 ~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~--~~ 80 (142)
T cd03132 3 KVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFAL--AP 80 (142)
T ss_pred EEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHH--cc
Confidence 467765542 23445678888999998877531 112 258999999985432221 12
Q ss_pred hhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 106 KTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 106 ~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
...+.++++++.+.++||.+||-|-.+|+.+
T Consensus 81 ~~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 81 SGRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred ChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 2357889999999999999999999999984
No 352
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=97.16 E-value=0.0014 Score=64.45 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=39.5
Q ss_pred CCCCEEEECCCCCchHHHH-HH-------HhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 84 LNANRLIFPGVGAFAAAMD-VL-------NKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 84 ~~~DGlILpGGg~~~~~~~-~l-------~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.+||+||||||......+. +. ....+.+.++++.++++||.+||.|-++|+.+
T Consensus 81 ~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~ 141 (213)
T cd03133 81 ADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKI 141 (213)
T ss_pred hHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHH
Confidence 4699999999843222221 11 12357788999999999999999999999884
No 353
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.16 E-value=0.0012 Score=67.04 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.|.+..+.+.+..-..||++-..+..+.... .....+.++++++.++.|+.+|+||++.|+ ++++.+.
T Consensus 155 T~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~-----------~~~~~~~ 223 (263)
T CHL00200 155 SSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQ-----------IKQIKGW 223 (263)
T ss_pred CCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHH-----------HHHHHhc
Confidence 4567777777765558999887776543211 133466778888888999999999999876 9999999
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
|||.||+||+.++
T Consensus 224 GADGvVVGSalv~ 236 (263)
T CHL00200 224 NINGIVIGSACVQ 236 (263)
T ss_pred CCCEEEECHHHHH
Confidence 9999999999875
No 354
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=97.16 E-value=0.001 Score=70.02 Aligned_cols=92 Identities=26% Similarity=0.250 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccC------------CCCCCC---CchhHHHHHHHhhhc--cccEEEeCCccccccCC
Q 045794 308 KPVELARQYYKEGADEISFLNITGF------------RDFPLG---DLPMLQVLRLTSENV--FVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~------------~~~~~~---~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~ 370 (578)
+..++|+.+.+.|++.|.+..=... .++..+ ....++.++++++.+ .+||..-|||++.+|
T Consensus 217 ~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~d-- 294 (327)
T cd04738 217 ELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGED-- 294 (327)
T ss_pred HHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHH--
Confidence 6789999999999999998752100 011111 124478899999888 799999999999977
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
+.+++.+|||.|.+||.++.+. |.++.++.+
T Consensus 295 ---------a~e~l~aGAd~V~vg~~~~~~g-----------P~~~~~i~~ 325 (327)
T cd04738 295 ---------AYEKIRAGASLVQLYTGLVYEG-----------PGLVKRIKR 325 (327)
T ss_pred ---------HHHHHHcCCCHHhccHHHHhhC-----------cHHHHHHHh
Confidence 9999999999999999998753 455666654
No 355
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=97.13 E-value=0.0022 Score=63.05 Aligned_cols=90 Identities=16% Similarity=0.219 Sum_probs=67.8
Q ss_pred CCcEEEEEECCC----CCHHHHHHHHHHCCCeEEEeCCc---------cCCCCCCEEEECCCCCchHHHHHHHhhcHHHH
Q 045794 46 SDSVVTLLDYGA----GNVRSVRNAIRHLGFGIKDVQTP---------EDILNANRLIFPGVGAFAAAMDVLNKTGMAEA 112 (578)
Q Consensus 46 ~~~~I~vld~~~----g~~~~i~~~L~~~Gv~v~~v~~~---------~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~ 112 (578)
..++|+++...+ .+...+.+.+++.|+++..+... +.+.++|+|+++||. +...+..++..++.+.
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~-~~~~~~~l~~t~~~~~ 106 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGN-QLRLLSVLRETPLLDA 106 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCc-HHHHHHHHHhCChHHH
Confidence 456788987554 35667888999999877654332 127889999999965 3445566666667777
Q ss_pred HHHHHhCCCCEEEEechHHHHhhh
Q 045794 113 LCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 113 i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
|++...++.|+.|+|.|..+++..
T Consensus 107 i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 107 ILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHHHcCCeEEEcCHHHHHhhhc
Confidence 777777999999999999999983
No 356
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.13 E-value=0.00021 Score=70.68 Aligned_cols=193 Identities=19% Similarity=0.244 Sum_probs=103.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
++.+.++...+.|.|.|++ .+.. .+...-+++..+.+.+.+|+.+= |+...+ ..
T Consensus 20 ~~~~~~~~~~~~gtDai~V---GGS~----~~~~~d~vv~~ik~~~~lPvilfPg~~~~v------------------s~ 74 (230)
T PF01884_consen 20 NPEEALEAACESGTDAIIV---GGSD----TGVTLDNVVALIKRVTDLPVILFPGSPSQV------------------SP 74 (230)
T ss_dssp -HHHHHHHHHCTT-SEEEE---E-ST----HCHHHHHHHHHHHHHSSS-EEEETSTCCG--------------------T
T ss_pred CcHHHHHHHHhcCCCEEEE---CCCC----CccchHHHHHHHHhcCCCCEEEeCCChhhc------------------Cc
Confidence 5667777778889998885 2321 01222455666666689998765 444442 35
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
+||.+.+=|..=.++++|+- ..-.+.+ ++++.+ ++.. +
T Consensus 75 ~aDail~~svlNs~n~~~ii-------g~~~~aa~~~~~~~~e-~ip~-----g-------------------------- 115 (230)
T PF01884_consen 75 GADAILFPSVLNSRNPYWII-------GAQVEAAPLIKKLGLE-VIPT-----G-------------------------- 115 (230)
T ss_dssp TSSEEEEEEETTBSSTTTTT-------HHHHHHHHHCHHHHCC-EEEE-----E--------------------------
T ss_pred CCCEEEEEEEecCCCcchHh-------hHHHHHHHHHHhhcce-ecce-----E--------------------------
Confidence 78988775554444555542 1112222 334422 2220 1
Q ss_pred eEEEEEccc--------ccCCCCCHHHHHHHHH----HcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCC
Q 045794 464 WYQCTVNGG--------REGRPIGAYELAKAVE----DLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGA 531 (578)
Q Consensus 464 ~~~~~~~g~--------~~~~~~~~~e~~~~~~----~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi 531 (578)
| +.++.+ .+..+.+..+++..+. =+|. .++|..-- .|+...+.-+.++..++..++|+|++|||
T Consensus 116 -Y-ivi~~g~~v~~v~~a~pi~~~~~~iaa~~alA~~~~g~-~~iYLEaG-SGa~~~v~~~v~~~~~~~~~~~LivGGGI 191 (230)
T PF01884_consen 116 -Y-IVINPGSKVARVTGARPIPLDKPEIAAAAALAAEYLGM-PIIYLEAG-SGAYGPVPEEVIAAVKKLSDIPLIVGGGI 191 (230)
T ss_dssp -E-EEESTTSHHHHHTTB-----SHHHHHHHHHHHHHHTT--SEEEEE---TTSSS-HHHHHHHHHHHSSSSEEEEESS-
T ss_pred -E-EEECCCCceEEeecceecCCCcHHHHHHHHHHHHHhCC-CEEEEEeC-CCCCCCccHHHHHHHHhcCCccEEEeCCc
Confidence 1 112221 1112334444433322 2343 35555431 46665554455555566669999999999
Q ss_pred CCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 532 GAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 532 ~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+|.|.++++.+ .|||.|++|+++++... ++++.+..+
T Consensus 192 rs~e~A~~~~~-aGAD~IVvGn~iee~~~-~e~~~~~i~ 228 (230)
T PF01884_consen 192 RSPEQAREMAE-AGADTIVVGNAIEEDPD-LEEALETIK 228 (230)
T ss_dssp -SHHHHHHHHC-TTSSEEEESCHHHHHH--HHHHHTHHH
T ss_pred CCHHHHHHHHH-CCCCEEEECCEEEEcch-HHHHHHHHh
Confidence 99999999995 99999999999998765 566555443
No 357
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.13 E-value=0.015 Score=60.22 Aligned_cols=203 Identities=16% Similarity=0.198 Sum_probs=116.8
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
.+.+..++.+.+ .|+.+....-...+ -..-..+++.++++. ++||.+ .++ |. +++.+++.++.|
T Consensus 33 avi~aAe~~~sP--vIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~l-----HLD-----H~-~~~~i~~ai~~G 99 (293)
T PRK07315 33 AILRAAEAKKAP--VLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAI-----HLD-----HG-HYEDALECIEVG 99 (293)
T ss_pred HHHHHHHHHCCC--EEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEE-----ECC-----CC-CHHHHHHHHHcC
Confidence 445555555555 44555421101111 122356677788777 668754 222 34 567799999999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
++.|.+.-..+.. ++.++ ....+.+++..|| -.+-.-|....+. +++
T Consensus 100 ftSVm~d~S~l~~-eEni~-----~t~~v~~~a~~~g-v~vE~ElG~i~g~------------------ed~-------- 146 (293)
T PRK07315 100 YTSIMFDGSHLPV-EENLK-----LAKEVVEKAHAKG-ISVEAEVGTIGGE------------------EDG-------- 146 (293)
T ss_pred CCEEEEcCCCCCH-HHHHH-----HHHHHHHHHHHcC-CEEEEecCcccCc------------------Ccc--------
Confidence 9999995444432 22221 0123444455576 2232222211100 000
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEe--ccCCCCCC----CCCCHHHHHHHHhhC-CCcEEEecC--CCCHHHHH
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLN--CIDCDGQG----KGFDMDLIKLISDAV-SIPVIASSG--AGAVEHFS 538 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t--di~~dG~~----~G~d~~li~~l~~~~-~ipVIasGG--i~s~eDi~ 538 (578)
+.|... --++.+ ++++.+.|+|.+-+- .+ -|.+ ...+++.++++++.+ ++|+++-|| | +.++++
T Consensus 147 -~~g~s~--~t~pee-a~~f~~tgvD~LAv~iG~v--HG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi-~~e~~~ 219 (293)
T PRK07315 147 -IIGKGE--LAPIED-AKAMVETGIDFLAAGIGNI--HGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGI-PDDQIQ 219 (293)
T ss_pred -ccCccC--CCCHHH-HHHHHHcCCCEEeeccccc--cccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCC-CHHHHH
Confidence 111111 124555 455558899988755 33 2222 357999999999998 599999999 7 558899
Q ss_pred HHHHhcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
++.+ .|+.++-|+|.+.. -....+++++
T Consensus 220 ~~i~-~Gi~KiNv~T~i~~--~~~~~~~~~~ 247 (293)
T PRK07315 220 EAIK-LGVAKVNVNTECQI--AFANATRKFA 247 (293)
T ss_pred HHHH-cCCCEEEEccHHHH--HHHHHHHHHH
Confidence 9985 99999999998864 2234445444
No 358
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.10 E-value=0.0024 Score=67.15 Aligned_cols=88 Identities=25% Similarity=0.356 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEec--------ccCC-------CCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCC
Q 045794 307 GKPVELARQYYKEGADEISFLNI--------TGFR-------DFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANG 371 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl--------~~~~-------~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~ 371 (578)
.+..++|+.+.+.|++.|.+.+- +... .+..-....++.++++.+.+++||...|||++.+|
T Consensus 175 ~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~D--- 251 (325)
T cd04739 175 SALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAED--- 251 (325)
T ss_pred cCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHH---
Confidence 47889999999999999998652 1100 00111123467888998888999999999999987
Q ss_pred CccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 372 RHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 372 ~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
+.+.+.+||+-|-++|+.+.+.+.++
T Consensus 252 --------a~e~l~aGA~~Vqv~ta~~~~gp~~~ 277 (325)
T cd04739 252 --------VVKYLLAGADVVMTTSALLRHGPDYI 277 (325)
T ss_pred --------HHHHHHcCCCeeEEehhhhhcCchHH
Confidence 88888899999999999998655444
No 359
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.10 E-value=0.011 Score=58.50 Aligned_cols=162 Identities=17% Similarity=0.142 Sum_probs=109.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc--c-cEEEe-CCccccccCCCCccChHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF--V-PLTVG-GGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~--~-pi~~g-GGir~~~d~~~~~~~~~~~~~~ 382 (578)
.+-+++++.+.+.|++-+=|. ++. ...++.|+++.++.. . .+.+| |-|.+.++ ++.
T Consensus 27 ~~a~~~~~al~~gGi~~iEiT-~~t--------p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~-----------a~~ 86 (222)
T PRK07114 27 EVAKKVIKACYDGGARVFEFT-NRG--------DFAHEVFAELVKYAAKELPGMILGVGSIVDAAT-----------AAL 86 (222)
T ss_pred HHHHHHHHHHHHCCCCEEEEe-CCC--------CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHH-----------HHH
Confidence 467789999999999855443 221 223677777764331 2 27787 67778755 999
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
..++||+.++--. + ++++++. +.++|- ..
T Consensus 87 a~~aGA~FiVsP~--~-------------~~~v~~~-~~~~~i----~~------------------------------- 115 (222)
T PRK07114 87 YIQLGANFIVTPL--F-------------NPDIAKV-CNRRKV----PY------------------------------- 115 (222)
T ss_pred HHHcCCCEEECCC--C-------------CHHHHHH-HHHcCC----CE-------------------------------
Confidence 9999999877531 2 2455554 445541 11
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCC-HHHHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGA-VEHFSDV 540 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s-~eDi~~l 540 (578)
+.| -.++- .+..+.++|++.+=+...+. -| ...++.++.-+ .+|+++.|||.- .+++.+.
T Consensus 116 ------iPG-----~~Tps-Ei~~A~~~Ga~~vKlFPA~~----~G--~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~y 177 (222)
T PRK07114 116 ------SPG-----CGSLS-EIGYAEELGCEIVKLFPGSV----YG--PGFVKAIKGPMPWTKIMPTGGVEPTEENLKKW 177 (222)
T ss_pred ------eCC-----CCCHH-HHHHHHHCCCCEEEECcccc----cC--HHHHHHHhccCCCCeEEeCCCCCcchhcHHHH
Confidence 112 12334 44566789999998888442 24 57788887766 689999999974 4889999
Q ss_pred HHhcCchHHhhhhhhccC
Q 045794 541 FRKTNASAALAAGIFHRK 558 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~ 558 (578)
++ .|+.+|.+||.+...
T Consensus 178 l~-aGa~avg~Gs~L~~~ 194 (222)
T PRK07114 178 FG-AGVTCVGMGSKLIPK 194 (222)
T ss_pred Hh-CCCEEEEEChhhcCc
Confidence 86 999999999988643
No 360
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.10 E-value=0.0014 Score=66.40 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCC-chhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGD-LPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~-~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.|.+.++.+.+..-..||++-+.+..+..... ....+.++++++.+++|+.+|+||++.+| ++++++.
T Consensus 153 t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~-----------v~~~~~~ 221 (258)
T PRK13111 153 TTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQ-----------AAAIAAV 221 (258)
T ss_pred CCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHH-----------HHHHHHh
Confidence 55677777878777789998887654332222 23455889999888999999999999876 9999975
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
||.|++||+.++
T Consensus 222 -ADGviVGSaiv~ 233 (258)
T PRK13111 222 -ADGVIVGSALVK 233 (258)
T ss_pred -CCEEEEcHHHHH
Confidence 999999998876
No 361
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=97.10 E-value=0.0017 Score=64.96 Aligned_cols=71 Identities=28% Similarity=0.288 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+.+++|+.+.+.|++.||+- ... .+...+++.|+++. +.+||..-|||.+.+| ++++++.
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~---~~~---~g~~ad~~~I~~i~--~~ipVIgnGgI~s~ed-----------a~~~l~~ 212 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVD---AMD---PGNHADLKKIRDIS--TELFIIGNNSVTTIES-----------AKEMFSY 212 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEEC---cCC---CCCCCcHHHHHHhc--CCCEEEEECCcCCHHH-----------HHHHHHc
Confidence 478899999999999998872 211 12245788888886 6799988899999977 9999999
Q ss_pred Ccceeecchh
Q 045794 387 GADKISIGSD 396 (578)
Q Consensus 387 Ga~~vv~gt~ 396 (578)
|||-|.+|..
T Consensus 213 GaD~VmiGR~ 222 (233)
T cd02911 213 GADMVSVARA 222 (233)
T ss_pred CCCEEEEcCC
Confidence 9999999998
No 362
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=97.09 E-value=0.0094 Score=61.17 Aligned_cols=183 Identities=15% Similarity=0.131 Sum_probs=86.8
Q ss_pred CcEEEEEECCCCCHHHHHH-HHHHCC-----CeEEEeCCc-------------------cCC--CCCCEEEECCCCCc--
Q 045794 47 DSVVTLLDYGAGNVRSVRN-AIRHLG-----FGIKDVQTP-------------------EDI--LNANRLIFPGVGAF-- 97 (578)
Q Consensus 47 ~~~I~vld~~~g~~~~i~~-~L~~~G-----v~v~~v~~~-------------------~dl--~~~DGlILpGGg~~-- 97 (578)
..+|+|+++ +-.+..-.. .++-.| +++.++... +++ ..+||+||.|-+..
T Consensus 34 pL~I~IlNL-MP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAPvE~l 112 (298)
T PF04204_consen 34 PLKIGILNL-MPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAPVEQL 112 (298)
T ss_dssp -EEEEEE----SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---TTTTS
T ss_pred ceEEEEEec-ccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCCcCCC
Confidence 467999998 677765443 333333 455555321 123 47999999996311
Q ss_pred -hHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEE-c
Q 045794 98 -AAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQI-T 175 (578)
Q Consensus 98 -~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~-~ 175 (578)
..+.++.. .+.+.+.++.+.-.+.+.||.|.|.-... .-|.. +.. .....+|..+..+ .
T Consensus 113 ~Fe~V~YW~--El~~i~dwa~~~v~stl~iCWgAqAaLy~------~yGI~--K~~---------l~~KlfGVf~~~~~~ 173 (298)
T PF04204_consen 113 PFEEVDYWD--ELTEIFDWAKTHVTSTLFICWGAQAALYH------FYGIP--KYP---------LPEKLFGVFEHRVLD 173 (298)
T ss_dssp -GGGSTTHH--HHHHHHHHHHHHEEEEEEETHHHHHHHHH------HH------EE---------EEEEEEEEEEEEES-
T ss_pred CcccCCcHH--HHHHHHHHHHHcCCcchhhhHHHHHHHHH------HcCCC--ccc---------CCCcceeceeeeccC
Confidence 11222222 24455555555679999999999984442 22321 111 1123567666664 4
Q ss_pred cCCcccccCCCeEEEEEeeeeeec----CCCCCCcEEEEeecCCceEEEEE--eCCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 176 KDSEILDDVGDHHVYFVHSYRAMP----SDDNKEWVSSTCNYGDNFIASVR--RGNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 176 ~~~~l~~~l~~~~~~~~H~~~v~~----~~~~~~~~~~~~~~~d~~iegi~--~~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
..+++++++.. ..+.=||-+... +...+.+.+.......|. ..+. ++..+-+|.|||.+.. .|-+.+.+
T Consensus 174 ~~~pLl~Gfdd-~f~~PhSR~t~i~~~~i~~~~~L~vLa~s~~~G~-~l~~~~d~r~vfi~GH~EYd~~---TL~~EY~R 248 (298)
T PF04204_consen 174 PDHPLLRGFDD-TFFAPHSRYTEIDRDDIKKAPGLEVLAESEEAGV-FLVASKDGRQVFITGHPEYDAD---TLAKEYRR 248 (298)
T ss_dssp SS-GGGTT--S-EEEEEEEEEEE--HHHHCT-TTEEEEEEETTTEE-EEEEECCCTEEEE-S-TT--TT---HHHHHHHH
T ss_pred CCChhhcCCCc-cccCCcccccCCCHHHHhcCCCcEEEeccCCcce-EEEEcCCCCEEEEeCCCccChh---HHHHHHHH
Confidence 56799988862 223334444331 222233333333333343 3333 4678889999999754 46677776
Q ss_pred hccCC
Q 045794 250 PKTNI 254 (578)
Q Consensus 250 ~~~~~ 254 (578)
-+.+.
T Consensus 249 D~~~g 253 (298)
T PF04204_consen 249 DLAKG 253 (298)
T ss_dssp HHHCT
T ss_pred HHhCC
Confidence 66665
No 363
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=97.09 E-value=0.0074 Score=64.18 Aligned_cols=89 Identities=27% Similarity=0.325 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHcC-CcEEEEeccCC--CCCC----CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhh
Q 045794 479 GAYELAKAVEDLG-AGEILLNCIDC--DGQG----KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALA 551 (578)
Q Consensus 479 ~~~e~~~~~~~~G-~~~ii~tdi~~--dG~~----~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~v 551 (578)
+..++++.+++.| ++.|-+..-.. .++. .|+-....+.++..+.+|||+.|+|.+++...+++++..+|-|.+
T Consensus 238 e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~ 317 (363)
T COG1902 238 EAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAM 317 (363)
T ss_pred HHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEe
Confidence 4578999999999 67776554222 2221 234556677788888899999999999999999997445999999
Q ss_pred hhhhccCCCCHHHHHH
Q 045794 552 AGIFHRKEVPIQSVKE 567 (578)
Q Consensus 552 gsa~~~~~~~~~~~~~ 567 (578)
|+++..++.-...+++
T Consensus 318 gR~~ladP~~~~k~~~ 333 (363)
T COG1902 318 GRPFLADPDLVLKAAE 333 (363)
T ss_pred chhhhcCccHHHHHHc
Confidence 9999887765555543
No 364
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.0023 Score=62.44 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
.-+++++++.||..+.=. -.--|+..|+ |...++.+.+..++|||+--||+++.|...+.+ .|||+|++++|+..-.
T Consensus 141 ~v~arrLee~GcaavMPl-~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aME-lG~DaVL~NTAiA~A~ 218 (262)
T COG2022 141 PVLARRLEEAGCAAVMPL-GAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIARAK 218 (262)
T ss_pred HHHHHHHHhcCceEeccc-cccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHh-cccceeehhhHhhccC
Confidence 458999999999766522 2345888998 888999998888999999999999999999996 9999999999997655
Q ss_pred CCHH
Q 045794 560 VPIQ 563 (578)
Q Consensus 560 ~~~~ 563 (578)
-+..
T Consensus 219 DPv~ 222 (262)
T COG2022 219 DPVA 222 (262)
T ss_pred ChHH
Confidence 5444
No 365
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.08 E-value=0.0021 Score=65.62 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhh--C---CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDA--V---SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~--~---~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
++-++++.+.|++.|.+ ..++.+.++++.+. . ++.+.++||| +++.+.++.+ +|+|.+++|+++
T Consensus 192 leea~~A~~~GaDiI~L---------Dn~~~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~-~GvD~IsvG~l~ 260 (273)
T PRK05848 192 LEEAKNAMNAGADIVMC---------DNMSVEEIKEVVAYRNANYPHVLLEASGNI-TLENINAYAK-SGVDAISSGSLI 260 (273)
T ss_pred HHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHH-cCCCEEEeChhh
Confidence 56777777899996662 24578888887664 2 4459999999 9999999985 999999999999
Q ss_pred ccCC
Q 045794 556 HRKE 559 (578)
Q Consensus 556 ~~~~ 559 (578)
|+.+
T Consensus 261 ~sa~ 264 (273)
T PRK05848 261 HQAT 264 (273)
T ss_pred cCCC
Confidence 9543
No 366
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.08 E-value=0.00098 Score=70.60 Aligned_cols=87 Identities=25% Similarity=0.288 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEecc-------cC-----CCCCCC---CchhHHHHHHHhhhc--cccEEEeCCccccccCC
Q 045794 308 KPVELARQYYKEGADEISFLNIT-------GF-----RDFPLG---DLPMLQVLRLTSENV--FVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~-------~~-----~~~~~~---~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~ 370 (578)
+..++|+.+.+.|++.|.+.+=. .. .++..+ ....++.++++++.+ ++||..-|||++.+|
T Consensus 226 ~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~ed-- 303 (344)
T PRK05286 226 ELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAED-- 303 (344)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHH--
Confidence 57899999999999999998621 10 011111 123677899999988 799999999999977
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
+.+++.+||+-|-+||..+.+.|.++
T Consensus 304 ---------a~e~l~aGAd~V~v~~~~~~~gP~~~ 329 (344)
T PRK05286 304 ---------AYEKIRAGASLVQIYSGLIYEGPGLV 329 (344)
T ss_pred ---------HHHHHHcCCCHHHHHHHHHHhCchHH
Confidence 99999999999999999987534443
No 367
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=97.07 E-value=0.0019 Score=63.97 Aligned_cols=75 Identities=23% Similarity=0.225 Sum_probs=57.3
Q ss_pred HHHHHHHcCCCeEEEE--ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 312 LARQYYKEGADEISFL--NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 312 ~a~~~~~~g~~~i~~~--Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
.++...+.|++.+.+- +..... ......+++.++++++.+++|+.++|||++.+| ++++++.|||
T Consensus 135 ea~~a~~~G~d~i~~~~~g~t~~~--~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~-----------~~~~l~~Gad 201 (219)
T cd04729 135 EALNAAKLGFDIIGTTLSGYTEET--AKTEDPDFELLKELRKALGIPVIAEGRINSPEQ-----------AAKALELGAD 201 (219)
T ss_pred HHHHHHHcCCCEEEccCccccccc--cCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHH-----------HHHHHHCCCC
Confidence 3567778899987532 222211 111245678999999888999999999999876 9999999999
Q ss_pred eeecchhhhc
Q 045794 390 KISIGSDAVY 399 (578)
Q Consensus 390 ~vv~gt~~~~ 399 (578)
-|++||+..+
T Consensus 202 gV~vGsal~~ 211 (219)
T cd04729 202 AVVVGSAITR 211 (219)
T ss_pred EEEEchHHhC
Confidence 9999999876
No 368
>PLN02591 tryptophan synthase
Probab=97.04 E-value=0.002 Score=65.01 Aligned_cols=81 Identities=22% Similarity=0.212 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCch-hHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLP-MLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~-~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+.+.++...+..-..||++-..+..+...+... ..+.++++++.+++|+.+|-||++.+| ++++++.
T Consensus 142 t~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~-----------v~~~~~~ 210 (250)
T PLN02591 142 TPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEH-----------AKQIAGW 210 (250)
T ss_pred CCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHH-----------HHHHHhc
Confidence 3345666666666677898887766543322223 345588888888999999999999876 9999999
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
|||-||+||+.++
T Consensus 211 GADGvIVGSalVk 223 (250)
T PLN02591 211 GADGVIVGSAMVK 223 (250)
T ss_pred CCCEEEECHHHHH
Confidence 9999999999876
No 369
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=97.04 E-value=0.016 Score=67.73 Aligned_cols=176 Identities=13% Similarity=0.114 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+.++.++...+.|++.|.+=+=+.... .......-++++++..++++.+ ++. ++-.++.|
T Consensus 20 ~~~~~l~~~l~~g~~~iqlR~K~~~~~---~~~~~a~~l~~l~~~~~~~lii----nd~-------------~~la~~~~ 79 (755)
T PRK09517 20 KVAGIVDSAISGGVSVVQLRDKNAGVE---DVRAAAKELKELCDARGVALVV----NDR-------------LDVAVELG 79 (755)
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCCCHH---HHHHHHHHHHHHHHHhCCeEEE----eCh-------------HHHHHHcC
Confidence 355677777788998888753332100 0011223344555556788875 332 55677889
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
+| |=+|...+. ++++.+..|+++ ++++-+.
T Consensus 80 ~d-VHlg~~dl~----------------~~~~r~~~~~~~-~iG~S~h-------------------------------- 109 (755)
T PRK09517 80 LH-VHIGQGDTP----------------YTQARRLLPAHL-ELGLTIE-------------------------------- 109 (755)
T ss_pred CC-eecCCCcCC----------------HHHHHHhcCCCC-EEEEeCC--------------------------------
Confidence 99 667753321 234445455443 3344322
Q ss_pred EEcccccCCCCCHHHHHHH---HHHc---CCcEEEEeccCCCCCCC----CCCHHHHHHHHhhCC---CcEEEecCCCCH
Q 045794 468 TVNGGREGRPIGAYELAKA---VEDL---GAGEILLNCIDCDGQGK----GFDMDLIKLISDAVS---IPVIASSGAGAV 534 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~---~~~~---G~~~ii~tdi~~dG~~~----G~d~~li~~l~~~~~---ipVIasGGi~s~ 534 (578)
+..+..+. .... |++.+.+-.+-...+.. ...++.++++++.+. +||+|-||| +.
T Consensus 110 -----------~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~ 177 (755)
T PRK09517 110 -----------TLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GL 177 (755)
T ss_pred -----------CHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CH
Confidence 12232221 1223 49999977665444443 347899999988887 999999999 88
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
+++.++.+ .|++||.+.+++...+.....++
T Consensus 178 ~~~~~~~~-~Ga~giAvisai~~a~d~~~a~~ 208 (755)
T PRK09517 178 RNAAELAA-TGIDGLCVVSAIMAAANPAAAAR 208 (755)
T ss_pred HHHHHHHH-cCCCEEEEehHhhCCCCHHHHHH
Confidence 99999985 99999999999986554333333
No 370
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=97.03 E-value=0.00074 Score=64.29 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=54.8
Q ss_pred CCCCCEEEECCCCC----chHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecC
Q 045794 83 ILNANRLIFPGVGA----FAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDS 158 (578)
Q Consensus 83 l~~~DGlILpGGg~----~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~ 158 (578)
..+|||+||+|... +.+...|-+ +.+.+..+-+...|+|++|.|+|....+. .| ....
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~E---l~~i~dwa~~~v~stl~iCWgaqaal~~~------yG------i~k~--- 121 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEE---LTEILDWAKTHVTSTLFSCWAAMAALYYF------YG------IKKH--- 121 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHH---HHHHHHHHHHhCcchHHHHHHHHHHHHHH------cC------cccc---
Confidence 46799999999742 111112222 34444444467899999999999988852 22 1111
Q ss_pred CCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeee
Q 045794 159 SNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYR 196 (578)
Q Consensus 159 ~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~ 196 (578)
.......|.....+...++++++++ .+.+-+.|...
T Consensus 122 --~~~~K~~Gvf~~~~~~~hpL~~g~~d~F~~PhSR~~~ 158 (175)
T cd03131 122 --QLPEKIFGVFPHTILEPHPLLRGLDDGFDVPHSRYAE 158 (175)
T ss_pred --cCCCceEEEEEeeecCCCccccCCCCceeecCccccc
Confidence 1122345655545545778888876 45554544433
No 371
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=97.03 E-value=0.0023 Score=63.87 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=39.7
Q ss_pred CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 83 ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 83 l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
..+||+||||||.....++ .....+.+.++++.+.++||-+||-|-++|+.+
T Consensus 92 ~~dYDav~iPGG~g~~~dl--~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDF--PHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhhhc--ccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 3579999999984322222 222356788999999999999999999999873
No 372
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.01 E-value=0.0018 Score=66.85 Aligned_cols=82 Identities=22% Similarity=0.283 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEeccc------------CC---CCCCC---CchhHHHHHHHhhhc--cccEEEeCCccccc
Q 045794 308 KPVELARQYYKEGADEISFLNITG------------FR---DFPLG---DLPMLQVLRLTSENV--FVPLTVGGGIRDFT 367 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~------------~~---~~~~~---~~~~~~~i~~i~~~~--~~pi~~gGGir~~~ 367 (578)
+..++|+.+.+.|+|.|++..-.. .. .+..+ ....++.++++++.+ ++||...|||++.+
T Consensus 177 ~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~ 256 (289)
T cd02810 177 DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGE 256 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHH
Confidence 678999999999999999864211 00 00000 123577899999888 89999999999987
Q ss_pred cCCCCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 368 DANGRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 368 d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
| +.+++.+|||.|.+|+..+.+
T Consensus 257 d-----------a~~~l~~GAd~V~vg~a~~~~ 278 (289)
T cd02810 257 D-----------VLEMLMAGASAVQVATALMWD 278 (289)
T ss_pred H-----------HHHHHHcCccHheEcHHHHhc
Confidence 7 999999999999999999985
No 373
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=96.99 E-value=0.0035 Score=66.19 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=59.9
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCC---CCCCHHHHHHHHhh---C--CCcEEEecCCCCHHHHHHHHHhcCchHHhh
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQG---KGFDMDLIKLISDA---V--SIPVIASSGAGAVEHFSDVFRKTNASAALA 551 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~---~G~d~~li~~l~~~---~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~v 551 (578)
..+.++.+.+.|++.|++-+- .|+. ..+-.+.+.++.+. + .+|||++|||++-.|+.+++. +||++|.+
T Consensus 223 ~~~dA~~a~~~G~d~I~vsnh--gG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kala-LGA~aV~i 299 (344)
T cd02922 223 TVEDAVLAAEYGVDGIVLSNH--GGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALC-LGAKAVGL 299 (344)
T ss_pred CHHHHHHHHHcCCCEEEEECC--CcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 367889999999999998752 2432 12234556666552 2 589999999999999999995 99999999
Q ss_pred hhhhccCCC
Q 045794 552 AGIFHRKEV 560 (578)
Q Consensus 552 gsa~~~~~~ 560 (578)
|+++..+..
T Consensus 300 G~~~l~~l~ 308 (344)
T cd02922 300 GRPFLYALS 308 (344)
T ss_pred CHHHHHHHh
Confidence 999976554
No 374
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.002 Score=67.72 Aligned_cols=83 Identities=23% Similarity=0.317 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCC-CcEEEecCCCC---HHHHHHHHHhcCchHHhhhh
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVS-IPVIASSGAGA---VEHFSDVFRKTNASAALAAG 553 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~-ipVIasGGi~s---~eDi~~l~~~~G~~gv~vgs 553 (578)
+.+++.+++++.|+..|-+|.+++|+.-+-+ ..+.|+++...+. +|||++||..+ ..|+.+..++.++++||+++
T Consensus 164 dtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR 243 (477)
T KOG2334|consen 164 DTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIAR 243 (477)
T ss_pred cHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhhhH
Confidence 6799999999999999999999999988876 8899999999886 99999999999 78898888889999999999
Q ss_pred hhccCCCC
Q 045794 554 IFHRKEVP 561 (578)
Q Consensus 554 a~~~~~~~ 561 (578)
+...++-.
T Consensus 244 ~A~~n~Si 251 (477)
T KOG2334|consen 244 AAESNPSI 251 (477)
T ss_pred hhhcCCce
Confidence 88766543
No 375
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=96.96 E-value=0.0032 Score=62.28 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=39.3
Q ss_pred CCCCCEEEECCCCCchHHH-------HHHH-hhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 83 ILNANRLIFPGVGAFAAAM-------DVLN-KTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 83 l~~~DGlILpGGg~~~~~~-------~~l~-~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
+.+||+||||||......+ ..++ ...+.+.++++.++++||.+||-|-++|+.+
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~ 144 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKI 144 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHH
Confidence 3579999999984221111 1111 2257788999999999999999999999874
No 376
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=96.93 E-value=0.0036 Score=62.04 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-----cccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-----FVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-----~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
..|++..+.|.+. +|.+.+.=.+.-.++..-....++-|+++++.. .+||+++|||+. +++.
T Consensus 116 ~Tp~~~i~~~l~~-~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~------------eni~ 182 (220)
T PRK08883 116 ATPLHHLEYIMDK-VDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKV------------DNIR 182 (220)
T ss_pred CCCHHHHHHHHHh-CCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCH------------HHHH
Confidence 4788888877664 888888777743333222344566677776654 389999999995 4599
Q ss_pred HHHHcCcceeecchhhhcc
Q 045794 382 EYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~ 400 (578)
++.++|||.+|+||+.+..
T Consensus 183 ~l~~aGAd~vVvGSaIf~~ 201 (220)
T PRK08883 183 EIAEAGADMFVAGSAIFGQ 201 (220)
T ss_pred HHHHcCCCEEEEeHHHhCC
Confidence 9999999999999998863
No 377
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.92 E-value=0.0032 Score=66.44 Aligned_cols=88 Identities=24% Similarity=0.278 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCC---------------CCCCCchhHHHHHHHhhhccccEEEeCCccccccCCC
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRD---------------FPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANG 371 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~---------------~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~ 371 (578)
.+..++|+.+.+.|++.|.+.+--...+ +..-....++.++++.+.+++||..-|||++.+|
T Consensus 177 ~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~D--- 253 (334)
T PRK07565 177 SNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAED--- 253 (334)
T ss_pred hhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHH---
Confidence 4788999999999999998864311000 0000123467788888888999999999999987
Q ss_pred CccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 372 RHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 372 ~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
+.+.+.+||+-|-++|..+.+.++++
T Consensus 254 --------a~e~l~aGA~~V~v~t~~~~~g~~~~ 279 (334)
T PRK07565 254 --------VIKMLLAGADVVMIASALLRHGPDYI 279 (334)
T ss_pred --------HHHHHHcCCCceeeehHHhhhCcHHH
Confidence 88888999999999999998645443
No 378
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=96.91 E-value=0.0041 Score=66.45 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCC--CCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQG--KGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~--~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
.+-++.+.+.|++.|++.+- .|+. .++ -++.+.++++.+ .+|||+.|||++-.|+.+++. +||++|++|+.+
T Consensus 264 ~~dA~~a~~~G~d~I~vsnh--GGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALa-LGA~~v~iGr~~ 340 (383)
T cd03332 264 PDDARRAVEAGVDGVVVSNH--GGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALA-LGAKAVLIGRPY 340 (383)
T ss_pred HHHHHHHHHCCCCEEEEcCC--CCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHH-cCCCEEEEcHHH
Confidence 57788889999999998742 2322 233 467888887766 499999999999999999995 999999999988
Q ss_pred cc
Q 045794 556 HR 557 (578)
Q Consensus 556 ~~ 557 (578)
..
T Consensus 341 l~ 342 (383)
T cd03332 341 AY 342 (383)
T ss_pred HH
Confidence 63
No 379
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=96.89 E-value=0.014 Score=62.20 Aligned_cols=85 Identities=12% Similarity=0.110 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
..++++.+++.|++.|=+..-+..+ ..++..++.+++++.+++||+++|++ +++.+.+++++..||.|.+|+++...+
T Consensus 251 ~~~~~~~L~~~giD~i~vs~~~~~~-~~~~~~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iadP 328 (362)
T PRK10605 251 ALYLIEQLGKRGIAYLHMSEPDWAG-GEPYSDAFREKVRARFHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIANP 328 (362)
T ss_pred HHHHHHHHHHcCCCEEEeccccccC-CccccHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhCc
Confidence 4788999999999888766422111 12345567788888899999999997 899999999755599999999998877
Q ss_pred CCHHHHH
Q 045794 560 VPIQSVK 566 (578)
Q Consensus 560 ~~~~~~~ 566 (578)
.-...++
T Consensus 329 d~~~k~~ 335 (362)
T PRK10605 329 DLVARLQ 335 (362)
T ss_pred cHHHHHh
Confidence 5444433
No 380
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=96.87 E-value=0.0029 Score=66.69 Aligned_cols=91 Identities=14% Similarity=0.155 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCC------CCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPL------GDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~------~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
+.+++++.+.+.|++.|++--=++...+.. ....+.+.++++++.+ .+||...|||++.+| +
T Consensus 152 ~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~ed-----------a 220 (333)
T PRK11815 152 FLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEE-----------A 220 (333)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHH-----------H
Confidence 567899999999999988652111111111 0234688999999885 899999999999977 8
Q ss_pred HHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHh
Q 045794 381 SEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRV 422 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (578)
+++++ |||-|++|..++.+ |.+++++.+.
T Consensus 221 ~~~l~-~aDgVmIGRa~l~n------------P~~~~~~~~~ 249 (333)
T PRK11815 221 KEHLQ-HVDGVMIGRAAYHN------------PYLLAEVDRE 249 (333)
T ss_pred HHHHh-cCCEEEEcHHHHhC------------CHHHHHHHHH
Confidence 88887 79999999999995 3566777543
No 381
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.87 E-value=0.0033 Score=65.65 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCC-CCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH-
Q 045794 308 KPVELARQYYKEGADEISFLNITGFR-DFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR- 385 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~-~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~- 385 (578)
+.+++|+.+.+.|++.|++-= +.. ++..+...+.+.|+++.+.+++||..-|||.+.+| ++++++
T Consensus 149 ~~~~~a~~l~~~Gvd~i~Vh~--Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~d-----------a~~~l~~ 215 (312)
T PRK10550 149 RKFEIADAVQQAGATELVVHG--RTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQS-----------AQQCMAI 215 (312)
T ss_pred HHHHHHHHHHhcCCCEEEECC--CCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHH-----------HHHHHhc
Confidence 457999999999999888742 221 11112123789999999999999999999999977 888884
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
.|||-|.||..++.|
T Consensus 216 ~g~DgVmiGRg~l~n 230 (312)
T PRK10550 216 TGCDAVMIGRGALNI 230 (312)
T ss_pred cCCCEEEEcHHhHhC
Confidence 689999999999995
No 382
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.86 E-value=0.0021 Score=66.84 Aligned_cols=77 Identities=21% Similarity=0.217 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC--CHHHHHHHHhhC----------CCcEEEecCCCCHHHHHHHHHhcCc--
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF--DMDLIKLISDAV----------SIPVIASSGAGAVEHFSDVFRKTNA-- 546 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~--d~~li~~l~~~~----------~ipVIasGGi~s~eDi~~l~~~~G~-- 546 (578)
...++++++.|+|.|++.....-|+. |. -+.++.++.+.+ ++|||++|||.+-..+..++. +|+
T Consensus 113 ~~~A~~a~~~GaD~vVaqG~EAGGH~-G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaala-LGA~~ 190 (320)
T cd04743 113 PGLLKQFLENGARKFIFEGRECGGHV-GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSA-LAAPL 190 (320)
T ss_pred HHHHHHHHHcCCCEEEEecCcCcCCC-CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHH-cCCcc
Confidence 56789999999999999999998875 53 344555554433 799999999999999999985 888
Q ss_pred ------hHHhhhhhhccCC
Q 045794 547 ------SAALAAGIFHRKE 559 (578)
Q Consensus 547 ------~gv~vgsa~~~~~ 559 (578)
+||.+|+.|...+
T Consensus 191 ~~~Ga~~GV~mGTrFl~t~ 209 (320)
T cd04743 191 AERGAKVGVLMGTAYLFTE 209 (320)
T ss_pred cccccccEEEEccHHhcch
Confidence 7999999987544
No 383
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.86 E-value=0.064 Score=55.17 Aligned_cols=207 Identities=15% Similarity=0.163 Sum_probs=124.7
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCC-CCCchhHHHHHHHhhhcc--ccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFP-LGDLPMLQVLRLTSENVF--VPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~-~~~~~~~~~i~~i~~~~~--~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
.+.+..++.+.+- |+.+.-..-.. .+-..-..+++.++++.. +||.+ .++ |..+++.+++.+++|
T Consensus 33 avi~AAe~~~sPv--Iiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~l-----HLD-----Hg~~~e~i~~ai~~G 100 (285)
T PRK07709 33 AILAAAEEEKSPV--ILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAI-----HLD-----HGSSFEKCKEAIDAG 100 (285)
T ss_pred HHHHHHHHHCCCE--EEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEE-----ECC-----CCCCHHHHHHHHHcC
Confidence 4555555556653 44443210011 121233456777777665 78854 332 566788999999999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
.+-|.++-+.+.-. .|.+..+++. ..+| +++-.--|.+. |++ .
T Consensus 101 ftSVM~DgS~lp~e---------eNi~~Trevv~~Ah~~g-----v~VEaElG~ig------------------g~e-d- 146 (285)
T PRK07709 101 FTSVMIDASHHPFE---------ENVETTKKVVEYAHARN-----VSVEAELGTVG------------------GQE-D- 146 (285)
T ss_pred CCEEEEeCCCCCHH---------HHHHHHHHHHHHHHHcC-----CEEEEEEeccC------------------Ccc-C-
Confidence 99999954444311 1344444444 3455 33332222210 000 0
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCH-HHHHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAV-EHFSDV 540 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~-eDi~~l 540 (578)
.+ . .....-.++.+..+-+++-|++.+-+--=+.-|.++| .|+++++++.+.+++|++.-||-+.+ ++++++
T Consensus 147 -~~--~-~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~a 222 (285)
T PRK07709 147 -DV--I-AEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKA 222 (285)
T ss_pred -Cc--c-cccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHH
Confidence 00 0 0011124788888888899999888655566777766 59999999999999999999999888 667777
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.+ .|+..+=+++.+...- ...+++++.
T Consensus 223 i~-~Gi~KiNi~T~l~~a~--~~~~~~~~~ 249 (285)
T PRK07709 223 IS-LGTSKINVNTENQIEF--TKAVREVLN 249 (285)
T ss_pred HH-cCCeEEEeChHHHHHH--HHHHHHHHH
Confidence 74 8988887777653221 334455443
No 384
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.86 E-value=0.0021 Score=69.19 Aligned_cols=90 Identities=24% Similarity=0.230 Sum_probs=63.5
Q ss_pred HHHHHHHHHcC-CcEEEEeccCCCCCC-CCCCHHHHHHHH---hhC--------CCcEEEecCCCCHHHHHHHHHhcCch
Q 045794 481 YELAKAVEDLG-AGEILLNCIDCDGQG-KGFDMDLIKLIS---DAV--------SIPVIASSGAGAVEHFSDVFRKTNAS 547 (578)
Q Consensus 481 ~e~~~~~~~~G-~~~ii~tdi~~dG~~-~G~d~~li~~l~---~~~--------~ipVIasGGi~s~eDi~~l~~~~G~~ 547 (578)
.+.++.+++.| ++.|++. .+.-|+- ..+-+.++..+. +.+ ++|||++|||++.+++..++. +|++
T Consensus 166 ~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~a-lGAd 243 (418)
T cd04742 166 EEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFA-LGAD 243 (418)
T ss_pred HHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHH-cCCc
Confidence 55666677777 5777776 6666653 223445555544 333 599999999999999999996 9999
Q ss_pred HHhhhhhhccCCC--CHHHHHHHHHhC
Q 045794 548 AALAAGIFHRKEV--PIQSVKEHLYKE 572 (578)
Q Consensus 548 gv~vgsa~~~~~~--~~~~~~~~l~~~ 572 (578)
+|.+||+|.-..- .-+..|+.|.+.
T Consensus 244 ~V~~GT~flat~Ea~~s~~~K~~L~~a 270 (418)
T cd04742 244 FIVTGSINQCTVEAGTSDAVKDLLQKA 270 (418)
T ss_pred EEeeccHHHhCccccCCHHHHHHHHhC
Confidence 9999999865332 245677777554
No 385
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.83 E-value=0.054 Score=55.67 Aligned_cols=211 Identities=16% Similarity=0.188 Sum_probs=125.8
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
...+.+..++.++. .|+.+.-..-...+...-..+++.++++..+||.+ .++ |..+++.+++.+++|.
T Consensus 31 ~~avi~AAee~~sP--vIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPVal-----HLD-----H~~~~e~i~~ai~~Gf 98 (284)
T PRK12737 31 LQVVVETAAELRSP--VILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLAL-----HLD-----HHEDLDDIKKKVRAGI 98 (284)
T ss_pred HHHHHHHHHHhCCC--EEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHcCC
Confidence 33455555566665 33444421111112233445677888888999864 222 5667888999999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
.-|.++.+.+.-. .|.+..+++. ..+| +++-.--|.+. |.+-
T Consensus 99 tSVMiDgS~lp~e---------eNi~~T~~vv~~Ah~~g-----vsVEaElG~ig------------------g~e~--- 143 (284)
T PRK12737 99 RSVMIDGSHLSFE---------ENIAIVKEVVEFCHRYD-----ASVEAELGRLG------------------GQED--- 143 (284)
T ss_pred CeEEecCCCCCHH---------HHHHHHHHHHHHHHHcC-----CEEEEEEeecc------------------CccC---
Confidence 9999955444311 1334444443 4455 33333222210 0000
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCHHH-HHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAVEH-FSDVF 541 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~eD-i~~l~ 541 (578)
.+.. +-.+..-.++.+..+-+++-|+|.+-+--=+.-|.+.| .|+++++++.+.+++|++.-||=+.++| ++++.
T Consensus 144 ~~~~-~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai 222 (284)
T PRK12737 144 DLVV-DEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAI 222 (284)
T ss_pred Cccc-ccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH
Confidence 0000 00011123688888888899999887655566677766 5999999999999999999999877665 66666
Q ss_pred HhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 542 RKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+.|+..+=+++.+...- ...+++++.
T Consensus 223 -~~Gi~KiNi~T~l~~a~--~~~~~~~~~ 248 (284)
T PRK12737 223 -SLGICKVNVATELKIAF--SDAVKKYFY 248 (284)
T ss_pred -HCCCeEEEeCcHHHHHH--HHHHHHHHH
Confidence 48988887777653211 334445553
No 386
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.82 E-value=0.07 Score=54.89 Aligned_cols=211 Identities=12% Similarity=0.085 Sum_probs=126.9
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
...+.+..++.+.. .|+.+.-..-...+...-..+++.++++.++||.+ .++ |..+++.+++.+++|.
T Consensus 31 ~~avi~AAee~~sP--vIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPVal-----HLD-----Hg~~~e~i~~ai~~GF 98 (286)
T PRK12738 31 IQAILEVCSEMRSP--VILAGTPGTFKHIALEEIYALCSAYSTTYNMPLAL-----HLD-----HHESLDDIRRKVHAGV 98 (286)
T ss_pred HHHHHHHHHHHCCC--EEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHcCC
Confidence 33455555666665 33444321001112233456677888888999964 332 5677899999999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
.-|.++.+.+.-.+ |.+..+++. ..+| +++-.--|.+-.. .++
T Consensus 99 tSVM~DgS~lp~ee---------Ni~~T~evv~~Ah~~g-----v~VEaElG~igg~--------------ed~------ 144 (286)
T PRK12738 99 RSAMIDGSHFPFAE---------NVKLVKSVVDFCHSQD-----CSVEAELGRLGGV--------------EDD------ 144 (286)
T ss_pred CeEeecCCCCCHHH---------HHHHHHHHHHHHHHcC-----CeEEEEEEeeCCc--------------cCC------
Confidence 99999655443111 334444444 3354 3333222211000 000
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCHHH-HHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAVEH-FSDVF 541 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~eD-i~~l~ 541 (578)
+.... ....-.++.+..+-+++-|+|.+-+.-=+.-|.+.+ .|+++++++.+.+++|++.-||=+.++| ++++.
T Consensus 145 -~~~~~-~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai 222 (286)
T PRK12738 145 -MSVDA-ESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTI 222 (286)
T ss_pred -ccccc-chhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH
Confidence 00000 011123678888888889999888665566777765 5999999999999999999998877654 66666
Q ss_pred HhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 542 RKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+.|+..+=+++.+...- ...+++++.
T Consensus 223 -~~GI~KiNi~T~l~~a~--~~~~~~~~~ 248 (286)
T PRK12738 223 -ELGVTKVNVATELKIAF--AGAVKAWFA 248 (286)
T ss_pred -HcCCeEEEeCcHHHHHH--HHHHHHHHH
Confidence 48988887777664322 334455553
No 387
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.77 E-value=0.075 Score=54.61 Aligned_cols=212 Identities=17% Similarity=0.183 Sum_probs=126.6
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
...+.+..++.+..-| +-+.-..-...+...-..+++.++++..+||.+ .++ |..++|.+++.+++|.
T Consensus 31 ~~avi~AAee~~sPvI--iq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~l-----HLD-----Hg~~~e~i~~Ai~~Gf 98 (284)
T PRK09195 31 MQVVVETAAELHSPVI--IAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLAL-----HLD-----HHEKFDDIAQKVRSGV 98 (284)
T ss_pred HHHHHHHHHHhCCCEE--EEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHcCC
Confidence 3345555556666533 444321001122234456788888888999864 332 4557888999999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHH---HHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQI---SRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+-|.++-+.+.-.+ |.+.-+++ +..+| +++-.--|.+- |++-
T Consensus 99 tSVM~DgS~l~~ee---------Ni~~T~~vv~~Ah~~g-----v~VEaElG~vg------------------g~e~--- 143 (284)
T PRK09195 99 RSVMIDGSHLPFAQ---------NISLVKEVVDFCHRFD-----VSVEAELGRLG------------------GQED--- 143 (284)
T ss_pred CEEEeCCCCCCHHH---------HHHHHHHHHHHHHHcC-----CEEEEEEeccc------------------Cccc---
Confidence 99999544443111 23444444 34455 33332222210 0000
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCHHH-HHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAVEH-FSDVF 541 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~eD-i~~l~ 541 (578)
.+... ..+..-.++.+..+-+++-|+|.+-+--=+.-|.+.| .|+++++++.+.+++|++.-||=+.+++ ++++.
T Consensus 144 ~~~~~-~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai 222 (284)
T PRK09195 144 DLQVD-EADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTI 222 (284)
T ss_pred Ccccc-cccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHH
Confidence 00000 0011124677888888889999887655566677766 6999999999999999999998877654 66666
Q ss_pred HhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 542 RKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
+.|+..+=+++.+...- ...+++++.+
T Consensus 223 -~~Gi~KiNi~T~l~~a~--~~~~~~~~~~ 249 (284)
T PRK09195 223 -KLGICKVNVATELKIAF--SQALKNYLTE 249 (284)
T ss_pred -HcCCeEEEeCcHHHHHH--HHHHHHHHHh
Confidence 48998887777664211 3445555543
No 388
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=96.76 E-value=0.023 Score=54.83 Aligned_cols=185 Identities=19% Similarity=0.194 Sum_probs=115.0
Q ss_pred EecCCHHHHHHHHHHcCCCeEEEEeccc-CCCCCCCCchhHHHHHHHhhhcccc--EEEeCCccccccCCCCccChHHHH
Q 045794 304 RNLGKPVELARQYYKEGADEISFLNITG-FRDFPLGDLPMLQVLRLTSENVFVP--LTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 304 ~~~~~p~~~a~~~~~~g~~~i~~~Dl~~-~~~~~~~~~~~~~~i~~i~~~~~~p--i~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
+..-+|+++|..|.+-||.-|.++-=.. +++ .-.|+..|++++. +..| +. .|.. ||-.-++ +
T Consensus 88 k~d~~~ae~A~~Yak~GAs~iSVLTe~k~FkG----sledL~~irk~~~-~k~p~~~l----L~Ke-----Fivd~~Q-I 152 (289)
T KOG4201|consen 88 KLDANAAEQALAYAKGGASCISVLTEPKWFKG----SLEDLVAIRKIAG-VKCPPKCL----LRKE-----FIVDPYQ-I 152 (289)
T ss_pred ccccCHHHHHHHHHhcCceeeeeecCchhhcc----cHHHHHHHHHHhc-CcCChHhH----hHHH-----HccCHHH-H
Confidence 3346999999999999999888754333 322 2456788887664 2333 11 1110 1111111 3
Q ss_pred HHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCC
Q 045794 381 SEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGE 460 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (578)
-+..-.|||.|.+=.+-+.+ ++ ...+-.+++..|-+-+| +
T Consensus 153 ~~aR~~GADaVLLIvamLs~-~~---------lk~l~k~~K~L~me~LV---------------------E--------- 192 (289)
T KOG4201|consen 153 YEARLKGADAVLLIVAMLSD-LL---------LKELYKISKDLGMEPLV---------------------E--------- 192 (289)
T ss_pred HHHHhcCCceeehHHHHcCh-HH---------HHHHHHHHHHcCCccee---------------------e---------
Confidence 33445699998876555553 21 13344556655533211 1
Q ss_pred CcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHH
Q 045794 461 EYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~ 538 (578)
+.-.+..+++.+.|+.-|=+++++-. .-..|+...+++.+-. ++=+++-.|+.+++|+.
T Consensus 193 -----------------Vn~~eEm~raleiGakvvGvNNRnL~--sFeVDlstTskL~E~i~kDvilva~SGi~tpdDia 253 (289)
T KOG4201|consen 193 -----------------VNDEEEMQRALEIGAKVVGVNNRNLH--SFEVDLSTTSKLLEGIPKDVILVALSGIFTPDDIA 253 (289)
T ss_pred -----------------eccHHHHHHHHHhCcEEEeecCCccc--eeeechhhHHHHHhhCccceEEEeccCCCCHHHHH
Confidence 11245566677779877777776543 2245777777777655 45678888999999999
Q ss_pred HHHHhcCchHHhhhhhhccCCCCHH
Q 045794 539 DVFRKTNASAALAAGIFHRKEVPIQ 563 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~~~~ 563 (578)
...+ .|+.+|+||-++....-+-+
T Consensus 254 ~~q~-~GV~avLVGEslmk~sDp~k 277 (289)
T KOG4201|consen 254 KYQK-AGVKAVLVGESLMKQSDPKK 277 (289)
T ss_pred HHHH-cCceEEEecHHHHhccCHHH
Confidence 9985 99999999999975544333
No 389
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=96.76 E-value=0.004 Score=58.10 Aligned_cols=94 Identities=29% Similarity=0.437 Sum_probs=65.6
Q ss_pred HHHHHHHHHHCCCeEEEeCCcc--------CCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHH
Q 045794 60 VRSVRNAIRHLGFGIKDVQTPE--------DILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQ 131 (578)
Q Consensus 60 ~~~i~~~L~~~Gv~v~~v~~~~--------dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~Q 131 (578)
...+.+.|++.|+++..++... .+.++|+|++.||. +...+..++..++.+.|+++..+|+|+.|+-.|..
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~-~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~ 80 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGD-TFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGAM 80 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S--HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCC-HHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHHh
Confidence 3467789999999988876543 15789999999964 45566777878899999999999999999999998
Q ss_pred HHhhhcccC--------CCcCCCcccCceee
Q 045794 132 LLFQSSEEN--------GPVNGLGLIPGVVG 154 (578)
Q Consensus 132 lLa~a~~e~--------~~~~Glgl~~~~v~ 154 (578)
+++..+... ..+.|+|+++..+.
T Consensus 81 i~~~~~~~~~~~~~~~~~~~~gLgl~~~~i~ 111 (154)
T PF03575_consen 81 ILGPSIETDSDSDDVELTNYDGLGLLPFVII 111 (154)
T ss_dssp CTSSBSCCGTTCCGCCECESB---SSSSEEE
T ss_pred hccCceeecCcCCcccCCCCCcCCCCCCEeE
Confidence 887653211 11347777776654
No 390
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=96.75 E-value=0.016 Score=58.97 Aligned_cols=143 Identities=18% Similarity=0.173 Sum_probs=101.0
Q ss_pred HHHHHHHHHcCcce--eecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADK--ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~--vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|... +=+|...-+ ..+.++.+.+.+|++ +.+.+|+..
T Consensus 90 ~~~~~~~~~~G~~~~KiKvg~~~~~------------d~~~v~~vr~~~g~~-~~l~vDan~------------------ 138 (265)
T cd03315 90 AEEARRALEAGFRTFKLKVGRDPAR------------DVAVVAALREAVGDD-AELRVDANR------------------ 138 (265)
T ss_pred HHHHHHHHHCCCCEEEEecCCCHHH------------HHHHHHHHHHhcCCC-CEEEEeCCC------------------
Confidence 34677788888653 334532111 136788998999864 677888643
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|.. -+..++++.++++++..| +.-....|++.++++++.+++||.+.+.+.++
T Consensus 139 ----------------~~~~---~~a~~~~~~l~~~~i~~i-------EeP~~~~d~~~~~~l~~~~~ipia~dE~~~~~ 192 (265)
T cd03315 139 ----------------GWTP---KQAIRALRALEDLGLDYV-------EQPLPADDLEGRAALARATDTPIMADESAFTP 192 (265)
T ss_pred ----------------CcCH---HHHHHHHHHHHhcCCCEE-------ECCCCcccHHHHHHHHhhCCCCEEECCCCCCH
Confidence 2321 246788899999887655 22344568999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.++.++++...++.+.+--....|.....++.+.....|+++
T Consensus 193 ~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~ 234 (265)
T cd03315 193 HDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPV 234 (265)
T ss_pred HHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcE
Confidence 999999875668877654444455555777888888888876
No 391
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.73 E-value=0.0036 Score=60.50 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=40.7
Q ss_pred cCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 81 EDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 81 ~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
++..++|.||||||..............+.++|+++.+++++|.+||.|..+|+.
T Consensus 65 ~~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 119 (195)
T cd03138 65 ADVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAE 119 (195)
T ss_pred cccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHH
Confidence 3457899999999753322101112235778999999999999999999999998
No 392
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=96.73 E-value=0.078 Score=56.33 Aligned_cols=65 Identities=20% Similarity=0.344 Sum_probs=44.7
Q ss_pred CCeEEEeCCc----cC-CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhc
Q 045794 71 GFGIKDVQTP----ED-ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSS 137 (578)
Q Consensus 71 Gv~v~~v~~~----~d-l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~ 137 (578)
.+.|..+... +. ..+++.+|+|||.+.... ..+.. .-.+.|+++++.|.-.||||.|..+-+...
T Consensus 30 ~y~V~~v~~~~l~~~pw~~~~~LlV~PGG~d~~y~-~~l~~-~g~~~Ir~fV~~GG~YlGiCAGaY~as~~~ 99 (367)
T PF09825_consen 30 HYAVIPVTADELLNEPWQSKCALLVMPGGADLPYC-RSLNG-EGNRRIRQFVENGGGYLGICAGAYYASSRC 99 (367)
T ss_pred CeEEEEeCHHHhhcCccccCCcEEEECCCcchHHH-HhhCh-HHHHHHHHHHHcCCcEEEECcchhhhccee
Confidence 3566666532 12 357999999998743322 22221 125789999999999999999998877654
No 393
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=96.73 E-value=0.0044 Score=57.78 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=38.6
Q ss_pred CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 84 LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 84 ~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
.++|.||+|||....... .....+.++++++.+++++|.+||-|..+|+.
T Consensus 59 ~~~D~liipGg~~~~~~~--~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~ 108 (163)
T cd03135 59 DDYDAIVIPGGLPGAQNL--ADNEKLIKLLKEFNAKGKLIAAICAAPAVLAK 108 (163)
T ss_pred CCCCEEEECCCCchHHHH--HhCHHHHHHHHHHHHcCCEEEEEchhHHHHHH
Confidence 579999999975211111 12235788999999999999999999999998
No 394
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.72 E-value=0.08 Score=54.19 Aligned_cols=209 Identities=20% Similarity=0.268 Sum_probs=126.9
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
...+.+..++.+.+ .|+.+.-..-...+-..-...++.+++...+||.+ .++ |..+++.+.+.+++|.
T Consensus 26 ~~avi~AAe~~~sP--vIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~l-----HLD-----H~~~~~~i~~ai~~Gf 93 (276)
T cd00947 26 LKAILEAAEETRSP--VILQISEGAIKYAGLELLVAMVKAAAERASVPVAL-----HLD-----HGSSFELIKRAIRAGF 93 (276)
T ss_pred HHHHHHHHHHhCCC--EEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHhCC
Confidence 33455555566665 44455421111112233456677788888899865 222 4456778999999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+-|.++.+.+.-. .|.+..+++. ..+| +++-.--|.+. |++ .
T Consensus 94 tSVMiD~S~l~~e---------eNi~~t~~vv~~ah~~g-----v~VEaElG~i~------------------g~e-~-- 138 (276)
T cd00947 94 SSVMIDGSHLPFE---------ENVAKTKEVVELAHAYG-----VSVEAELGRIG------------------GEE-D-- 138 (276)
T ss_pred CEEEeCCCCCCHH---------HHHHHHHHHHHHHHHcC-----CeEEEEEeeec------------------Ccc-C--
Confidence 9999966555321 1334444444 4454 33332222110 000 0
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC----CCHHHHHHHHhhCCCcEEEecCCCCHHH-HHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG----FDMDLIKLISDAVSIPVIASSGAGAVEH-FSDV 540 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G----~d~~li~~l~~~~~ipVIasGGi~s~eD-i~~l 540 (578)
. .. ..+..-.++.+..+-+++-|++.+-+.-=+.-|.+.+ .|+++++++.+.+++|++.-||=+.+++ ++++
T Consensus 139 ~--~~-~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~a 215 (276)
T cd00947 139 G--VV-GDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKA 215 (276)
T ss_pred C--cc-cccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH
Confidence 0 00 0011133677888888888999888665566677765 5999999999999999999999988855 8888
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.+ .|+..+=+++.+...- .+.+++++.
T Consensus 216 i~-~Gi~KiNi~T~l~~a~--~~~~~~~~~ 242 (276)
T cd00947 216 IK-LGVCKININTDLRLAF--TAALREYLA 242 (276)
T ss_pred HH-cCCeEEEeChHHHHHH--HHHHHHHHH
Confidence 75 8998887777664322 444555554
No 395
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=96.72 E-value=0.003 Score=68.41 Aligned_cols=90 Identities=22% Similarity=0.204 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCC-cEEEEeccCCCCCC-CCCCHHHHHHHH---hhC--------CCcEEEecCCCCHHHHHHHHHhcCch
Q 045794 481 YELAKAVEDLGA-GEILLNCIDCDGQG-KGFDMDLIKLIS---DAV--------SIPVIASSGAGAVEHFSDVFRKTNAS 547 (578)
Q Consensus 481 ~e~~~~~~~~G~-~~ii~tdi~~dG~~-~G~d~~li~~l~---~~~--------~ipVIasGGi~s~eDi~~l~~~~G~~ 547 (578)
.+-++.+++.|+ +.|++ ..+.-|+- ..+-+.++..+. +.+ ++|||++|||++.+++..++. +||+
T Consensus 171 ~eEA~~a~~~g~aD~Ivv-e~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAla-LGAd 248 (444)
T TIGR02814 171 REEAELARRVPVADDICV-EADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFM-LGAD 248 (444)
T ss_pred HHHHHHHHhCCCCcEEEE-eccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHH-cCCc
Confidence 455566777775 66655 46666653 223556666663 444 789999999999999999995 9999
Q ss_pred HHhhhhhhccCCC--CHHHHHHHHHhC
Q 045794 548 AALAAGIFHRKEV--PIQSVKEHLYKE 572 (578)
Q Consensus 548 gv~vgsa~~~~~~--~~~~~~~~l~~~ 572 (578)
+|.+||++.-..- .-+..|+.|.+.
T Consensus 249 gV~~GT~flat~Esgas~~~K~~L~~a 275 (444)
T TIGR02814 249 FIVTGSVNQCTVEAGTSDNVKKLLAKA 275 (444)
T ss_pred EEEeccHHHhCccccCCHHHHHHHHhC
Confidence 9999999864332 245677777554
No 396
>PLN02334 ribulose-phosphate 3-epimerase
Probab=96.72 E-value=0.0097 Score=59.32 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHcC-CCeEEEEecccCCCCCCCCchhHHHHHHHhhh-ccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEG-ADEISFLNITGFRDFPLGDLPMLQVLRLTSEN-VFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g-~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+|++.++.+.+.| +|.+.+..+....++..-....++.++++++. ...||++.|||+- +++.++.
T Consensus 125 ~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~------------e~i~~l~ 192 (229)
T PLN02334 125 GTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGP------------STIDKAA 192 (229)
T ss_pred CCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCH------------HHHHHHH
Confidence 36788888887774 99998887775433322223456667777765 3579999999965 4599999
Q ss_pred HcCcceeecchhhhcc
Q 045794 385 RSGADKISIGSDAVYA 400 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~ 400 (578)
++||+.+++||+.+..
T Consensus 193 ~aGad~vvvgsai~~~ 208 (229)
T PLN02334 193 EAGANVIVAGSAVFGA 208 (229)
T ss_pred HcCCCEEEEChHHhCC
Confidence 9999999999998863
No 397
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=96.68 E-value=0.0049 Score=65.10 Aligned_cols=83 Identities=23% Similarity=0.296 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEe--cccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLN--ITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~D--l~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+.+++++.+.+.|++.|++.- .............+++..+++++.+++||..+|||++.++ +++++
T Consensus 241 ~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~-----------a~~~l 309 (336)
T cd02932 241 EDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQ-----------AEAIL 309 (336)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHH-----------HHHHH
Confidence 3567889999999999888631 1110000111234578889999989999999999999876 99999
Q ss_pred HcC-cceeecchhhhcc
Q 045794 385 RSG-ADKISIGSDAVYA 400 (578)
Q Consensus 385 ~~G-a~~vv~gt~~~~~ 400 (578)
+.| +|.|.+|..++.|
T Consensus 310 ~~g~aD~V~~gR~~i~d 326 (336)
T cd02932 310 ESGRADLVALGRELLRN 326 (336)
T ss_pred HcCCCCeehhhHHHHhC
Confidence 998 9999999999985
No 398
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=96.67 E-value=0.005 Score=67.05 Aligned_cols=88 Identities=22% Similarity=0.286 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHcCCCeEEE---------EecccC-----------CCCCCC---CchhHHHHHHHhhhc---cccEEEe
Q 045794 307 GKPVELARQYYKEGADEISF---------LNITGF-----------RDFPLG---DLPMLQVLRLTSENV---FVPLTVG 360 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~---------~Dl~~~-----------~~~~~~---~~~~~~~i~~i~~~~---~~pi~~g 360 (578)
.+..++|+.+.+.|++.|.+ +|++.. .++..+ +...++.|+++.+.+ ++||..-
T Consensus 180 ~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~ 259 (420)
T PRK08318 180 TDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGI 259 (420)
T ss_pred ccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEee
Confidence 46789999999999999986 454320 011112 122589999999877 7999888
Q ss_pred CCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 361 GGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 361 GGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
|||.+.+| +.+++.+||+-|-|+|+++.+.+..+
T Consensus 260 GGI~s~~d-----------a~e~i~aGA~~Vqi~ta~~~~gp~ii 293 (420)
T PRK08318 260 GGIETWRD-----------AAEFILLGAGTVQVCTAAMQYGFRIV 293 (420)
T ss_pred cCcCCHHH-----------HHHHHHhCCChheeeeeeccCCchhH
Confidence 99999977 88888999999999999998655443
No 399
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.66 E-value=0.0023 Score=60.60 Aligned_cols=49 Identities=18% Similarity=0.347 Sum_probs=38.6
Q ss_pred CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 84 LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 84 ~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.++|.|+||||...... ....+.++|+++.+++++|.+||-|.++|+.+
T Consensus 59 ~~~D~l~I~Gg~~~~~~----~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 59 EDYDLLILPGGDSWDNP----EAPDLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred hHccEEEEcCCcccccC----CcHHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 57999999998532211 12246789999999999999999999999993
No 400
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=96.66 E-value=0.0089 Score=63.79 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCC-C-C-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGK-G-F-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~-G-~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
.+-++.+.+.|++.|++-+- -|+.. + + -.+.+.++.+.+ ++|||+.|||++-.|+.+++. +||++|++|+.|
T Consensus 256 ~~dA~~a~~~Gvd~I~Vs~h--GGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALa-LGA~~V~iGr~~ 332 (381)
T PRK11197 256 PEDARDAVRFGADGIVVSNH--GGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA-LGADTVLLGRAF 332 (381)
T ss_pred HHHHHHHHhCCCCEEEECCC--CCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHH-cCcCceeEhHHH
Confidence 56788899999999997652 33321 1 1 346677776655 599999999999999999995 999999999988
Q ss_pred ccC
Q 045794 556 HRK 558 (578)
Q Consensus 556 ~~~ 558 (578)
..+
T Consensus 333 l~~ 335 (381)
T PRK11197 333 VYA 335 (381)
T ss_pred HHH
Confidence 654
No 401
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=96.66 E-value=0.092 Score=51.06 Aligned_cols=178 Identities=21% Similarity=0.266 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
....+++.-..-||+ ++|+-+ +.++++.+.+.+.+||.|.+ +| .+..-...++|
T Consensus 28 ~V~~i~~AA~~ggAt---~vDIAa----------dp~LV~~~~~~s~lPICVSa----Ve---------p~~f~~aV~AG 81 (242)
T PF04481_consen 28 SVAAIVKAAEIGGAT---FVDIAA----------DPELVKLAKSLSNLPICVSA----VE---------PELFVAAVKAG 81 (242)
T ss_pred HHHHHHHHHHccCCc---eEEecC----------CHHHHHHHHHhCCCCeEeec----CC---------HHHHHHHHHhC
Confidence 444555555555776 678865 25778888888899998743 32 14466777899
Q ss_pred cceeecchhhhccchhhhhccccCCch----HHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKS----SLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
||-|=||.. ..|+..|.....+ +.++..+..+ .+.+|+-+-..
T Consensus 82 AdliEIGNf-----DsFY~qGr~f~a~eVL~Lt~~tR~LLP--~~~LsVTVPHi-------------------------- 128 (242)
T PF04481_consen 82 ADLIEIGNF-----DSFYAQGRRFSAEEVLALTRETRSLLP--DITLSVTVPHI-------------------------- 128 (242)
T ss_pred CCEEEecch-----HHHHhcCCeecHHHHHHHHHHHHHhCC--CCceEEecCcc--------------------------
Confidence 999999751 1133333333333 3444444454 35555543221
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEec-cCCCCCCCCC---------CHHHHHHHHhhCCCcEEEecCCCC
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNC-IDCDGQGKGF---------DMDLIKLISDAVSIPVIASSGAGA 533 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~td-i~~dG~~~G~---------d~~li~~l~~~~~ipVIasGGi~s 533 (578)
... + .-++++.++++.|+|-|=--. .+..-+..|. -+...-.+.+.+++||+++-|+++
T Consensus 129 ---------L~l-d-~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~ 197 (242)
T PF04481_consen 129 ---------LPL-D-QQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSA 197 (242)
T ss_pred ---------ccH-H-HHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcch
Confidence 000 0 236899999999998554221 2222222232 122333467778999999999987
Q ss_pred HHHHHHHHHhcCchHHhhhhhhcc
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
..-=.. + ..|++||-|||++.+
T Consensus 198 vT~PmA-i-aaGAsGVGVGSavn~ 219 (242)
T PF04481_consen 198 VTAPMA-I-AAGASGVGVGSAVNR 219 (242)
T ss_pred hhHHHH-H-HcCCcccchhHHhhh
Confidence 664444 4 389999999999964
No 402
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.65 E-value=0.0075 Score=59.47 Aligned_cols=94 Identities=20% Similarity=0.153 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 477 PIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 477 ~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
..++.++++.+++.|++.|-+.+.+ +. .+-+++.++.+++.+++||+..|++.+.+++..+.+ .|++++.++....
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~~--~~-~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~-~Gad~v~l~~~~~ 105 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTEP--KY-FQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARA-AGADAVLLIVAAL 105 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCc--cc-cCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHH-cCCCEEEEeeccC
Confidence 4589999999999999999766543 22 334557778888878999999999999989999985 9999998877654
Q ss_pred cCCCCHHHHHHHHHhCCCe
Q 045794 557 RKEVPIQSVKEHLYKEGIE 575 (578)
Q Consensus 557 ~~~~~~~~~~~~l~~~~i~ 575 (578)
.. -.++++.+..+..|+.
T Consensus 106 ~~-~~~~~~~~~~~~~g~~ 123 (217)
T cd00331 106 DD-EQLKELYELARELGME 123 (217)
T ss_pred CH-HHHHHHHHHHHHcCCe
Confidence 32 2344444445555664
No 403
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=96.63 E-value=0.1 Score=53.57 Aligned_cols=212 Identities=14% Similarity=0.116 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
....+.+..++.++. .|+.+....-...+...-..+++.++++..+||.+ .++ |..++|.+++.+++|
T Consensus 28 ~~~avi~AAee~~sP--vIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPVal-----HLD-----Hg~~~e~i~~ai~~G 95 (282)
T TIGR01858 28 TIQAVVETAAEMRSP--VILAGTPGTFKHAGTEYIVALCSAASTTYNMPLAL-----HLD-----HHESLDDIRQKVHAG 95 (282)
T ss_pred HHHHHHHHHHHhCCC--EEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHcC
Confidence 334555555566665 44555421111112233456777888888999864 222 456788899999999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
.+-|.++.+.+.-. .|.+..+++. ..+| +++-.--|.+. |.+-
T Consensus 96 FtSVM~DgS~lp~e---------eNi~~T~~vv~~Ah~~g-----v~VEaElG~vg------------------g~e~-- 141 (282)
T TIGR01858 96 VRSAMIDGSHFPFA---------QNVKLVKEVVDFCHRQD-----CSVEAELGRLG------------------GVED-- 141 (282)
T ss_pred CCEEeecCCCCCHH---------HHHHHHHHHHHHHHHcC-----CeEEEEEEecC------------------CccC--
Confidence 99999955544311 1334444444 4455 33332222110 0000
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCHHH-HHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAVEH-FSDV 540 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~eD-i~~l 540 (578)
.+... ..+..-.++.+..+-+++-|+|.+-+--=+.-|.+++ .|+++++++++.+++|++.-||-+.++| ++++
T Consensus 142 -~~~~~-~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~a 219 (282)
T TIGR01858 142 -DLSVD-EEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRT 219 (282)
T ss_pred -CCccc-cchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHH
Confidence 00000 0011123678888888899999887665566677766 5999999999999999999999887655 6666
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
. +.|+..|=+++.+...- ...+++++.
T Consensus 220 i-~~Gi~KiNi~T~l~~a~--~~~~~~~~~ 246 (282)
T TIGR01858 220 I-ELGICKVNVATELKIAF--SGAVKAYFA 246 (282)
T ss_pred H-HcCCeEEEeCcHHHHHH--HHHHHHHHH
Confidence 6 48988887777664222 334455543
No 404
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=96.61 E-value=0.029 Score=57.79 Aligned_cols=214 Identities=18% Similarity=0.234 Sum_probs=127.6
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
...+.+..++.+.+- |+.+....-...+-..-...++.++++.++||.+ .++ |..+++.+++.++.|.
T Consensus 30 ~~avi~AAe~~~sPv--Ilq~~~~~~~~~~~~~~~~~~~~~a~~~~vPVal-----HLD-----H~~~~e~i~~ai~~Gf 97 (287)
T PF01116_consen 30 ARAVIEAAEELNSPV--ILQISPSEVKYMGLEYLAAMVKAAAEEASVPVAL-----HLD-----HGKDFEDIKRAIDAGF 97 (287)
T ss_dssp HHHHHHHHHHTTS-E--EEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEE-----EEE-----EE-SHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCE--EEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEe-----ecc-----cCCCHHHHHHHHHhCc
Confidence 334555555666654 4444321000011123455788888888999965 222 4566788999999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHH---HHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLE---QISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+-|.++-+.+.-. + |....+ +++..+| +++-.--|.+... .+|.
T Consensus 98 tSVM~DgS~l~~e-e--------Ni~~T~~vv~~ah~~g-----v~VEaElG~i~g~--------------ed~~----- 144 (287)
T PF01116_consen 98 TSVMIDGSALPFE-E--------NIAITREVVEYAHAYG-----VSVEAELGHIGGK--------------EDGI----- 144 (287)
T ss_dssp SEEEEE-TTS-HH-H--------HHHHHHHHHHHHHHTT------EEEEEESBSSSS--------------CTTC-----
T ss_pred ccccccCCcCCHH-H--------HHHHHHHHHHhhhhhC-----CEEEEEeeeeecc--------------CCCc-----
Confidence 9999955544311 1 233333 3445576 3343322222100 0010
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC-----CCHHHHHHHHhhC-CCcEEEecCCCCHH-HHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG-----FDMDLIKLISDAV-SIPVIASSGAGAVE-HFS 538 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G-----~d~~li~~l~~~~-~ipVIasGGi~s~e-Di~ 538 (578)
....-.+..-.++.+..+-+++-|++.+-+.==+.-|.+++ .|+++++++.+.+ ++|++.-||=+.++ +++
T Consensus 145 --~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~ 222 (287)
T PF01116_consen 145 --ESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIR 222 (287)
T ss_dssp --SSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHH
T ss_pred --cccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHH
Confidence 00000011224788888889999999988776677788887 5899999999999 99999999988877 677
Q ss_pred HHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 539 DVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
++.+ .|+..+=+++.+...- .+.+++++.+.
T Consensus 223 ~ai~-~Gi~KiNi~T~~~~a~--~~~~~~~~~~~ 253 (287)
T PF01116_consen 223 KAIK-NGISKINIGTELRRAF--TDALREYLAEN 253 (287)
T ss_dssp HHHH-TTEEEEEESHHHHHHH--HHHHHHHHHHS
T ss_pred HHHH-cCceEEEEehHHHHHH--HHHHHHHHHhC
Confidence 7774 8999887788665322 45566666554
No 405
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.58 E-value=0.11 Score=53.59 Aligned_cols=209 Identities=18% Similarity=0.224 Sum_probs=124.9
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcce
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~ 390 (578)
.+.+..++.+.. .|+.+....-...+...-..+++.++++..+||.+ .++ |..++|.+++.+++|.+-
T Consensus 33 avi~AAee~~sP--vIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPVal-----HLD-----H~~~~e~i~~ai~~GftS 100 (284)
T PRK12857 33 AIVAAAEAEKSP--VIIQASQGAIKYAGIEYISAMVRTAAEKASVPVAL-----HLD-----HGTDFEQVMKCIRNGFTS 100 (284)
T ss_pred HHHHHHHHhCCC--EEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHcCCCe
Confidence 445555555655 44444421111112223345677788888999864 222 566788899999999999
Q ss_pred eecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 391 ISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 391 vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
|.++.+.+.-. .|.+..+++. ..+| +++-.--|.+- |.+- .+
T Consensus 101 VM~DgS~lp~e---------eNi~~T~~vv~~Ah~~g-----vsVEaElG~vg------------------g~e~---~~ 145 (284)
T PRK12857 101 VMIDGSKLPLE---------ENIALTKKVVEIAHAVG-----VSVEAELGKIG------------------GTED---DI 145 (284)
T ss_pred EEEeCCCCCHH---------HHHHHHHHHHHHHHHcC-----CEEEEEeeecC------------------CccC---CC
Confidence 99955544311 1344445544 3455 34433222210 0000 00
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCHHH-HHHHHHh
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAVEH-FSDVFRK 543 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~eD-i~~l~~~ 543 (578)
.. +..+..-.++.+..+-+++-|++.+-+--=+.-|.+.| .|+++++++.+.+++|++.-||=+.++| ++++.+
T Consensus 146 ~~-~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~- 223 (284)
T PRK12857 146 TV-DEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAIS- 223 (284)
T ss_pred Cc-ccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHH-
Confidence 00 00011123677888888889999887665566777776 5999999999999999999999887655 666664
Q ss_pred cCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 544 TNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 544 ~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.|+..+=+++-+...- .+.+++++.
T Consensus 224 ~Gi~KiNi~T~~~~a~--~~~~~~~~~ 248 (284)
T PRK12857 224 LGVRKVNIDTNIREAF--VARLREVLE 248 (284)
T ss_pred cCCeEEEeCcHHHHHH--HHHHHHHHH
Confidence 8988877677553221 344455554
No 406
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=96.58 E-value=0.012 Score=56.62 Aligned_cols=72 Identities=17% Similarity=0.309 Sum_probs=51.4
Q ss_pred HHHHHHHHCCCeEEEeCCc---------------------cCC--CCCCEEEECCC-CCchHHHHHHHhhcHHHHHHHHH
Q 045794 62 SVRNAIRHLGFGIKDVQTP---------------------EDI--LNANRLIFPGV-GAFAAAMDVLNKTGMAEALCAYI 117 (578)
Q Consensus 62 ~i~~~L~~~Gv~v~~v~~~---------------------~dl--~~~DGlILpGG-g~~~~~~~~l~~~~l~~~i~~~~ 117 (578)
.-...|+++|.++.++... ++. .+||+|++||| ..+...... ..+.+.++++.
T Consensus 20 ~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~~~~---~~~~~~v~~~~ 96 (188)
T COG0693 20 VPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYLRPD---PDLLAFVRDFY 96 (188)
T ss_pred HHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhhccCc---HHHHHHHHHHH
Confidence 3457888899876654221 112 48999999998 432221111 35788999999
Q ss_pred hCCCCEEEEechHHHHhhh
Q 045794 118 EKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 118 ~~g~PIlGIClG~QlLa~a 136 (578)
+.++||.+||.|-++|+.+
T Consensus 97 ~~~k~vaaIC~g~~~L~~a 115 (188)
T COG0693 97 ANGKPVAAICHGPAVLAAA 115 (188)
T ss_pred HcCCEEEEEChhHHHHhcc
Confidence 9999999999999999983
No 407
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.58 E-value=0.0037 Score=59.89 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=40.3
Q ss_pred CCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 82 DILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 82 dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
+..++|.||+|||..... ......+.++++++..++++|.+||.|-++|+.+
T Consensus 61 ~~~~~D~liipGg~~~~~---~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 61 ALAAADTVIVPGGPDVDG---RPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred ccCCCCEEEECCCccccc---ccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 456899999999853321 1122357789999999999999999999999983
No 408
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=96.55 E-value=0.0049 Score=58.58 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=39.1
Q ss_pred CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 83 ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 83 l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
..++|.||+|||....... .....+.++|+++.+.++||.+||-|-.+|+.+
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~--~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENL--RNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred cccCCEEEECCCchHHHHH--hhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 4569999999974211111 122257889999999999999999999999983
No 409
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=96.54 E-value=0.12 Score=53.47 Aligned_cols=210 Identities=11% Similarity=0.148 Sum_probs=124.0
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
...+.+.-++.+..-| +-++...-...+......+++.++++.. +||.+ .++ |..++|.+++.+++|
T Consensus 30 ~~avi~AAe~~~sPvI--lq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPVal-----HLD-----Hg~~~e~i~~ai~~G 97 (307)
T PRK05835 30 LNAIFEAGNEENSPLF--IQASEGAIKYMGIDMAVGMVKIMCERYPHIPVAL-----HLD-----HGTTFESCEKAVKAG 97 (307)
T ss_pred HHHHHHHHHHHCCCEE--EEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEE-----ECC-----CCCCHHHHHHHHHcC
Confidence 3345555556666643 4443211111122334456777777775 89864 332 456788899999999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHH---HHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQI---SRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
.+-|.++-+.+.-. .|.+..+++ +..+| +++-.--|.+. |.+ .
T Consensus 98 ftSVM~DgS~l~~e---------eNi~~T~~vve~Ah~~g-----v~VEaElG~vg------------------g~e-d- 143 (307)
T PRK05835 98 FTSVMIDASHHAFE---------ENLELTSKVVKMAHNAG-----VSVEAELGRLM------------------GIE-D- 143 (307)
T ss_pred CCEEEEeCCCCCHH---------HHHHHHHHHHHHHHHcC-----CEEEEEecccC------------------Ccc-C-
Confidence 99999954433211 123444444 34465 34433322221 000 0
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCC--C---CCHHHHHHHHhhCCCcEEEecCCCCHH----
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK--G---FDMDLIKLISDAVSIPVIASSGAGAVE---- 535 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~--G---~d~~li~~l~~~~~ipVIasGGi~s~e---- 535 (578)
.+... ..+..-.++.+..+-+++-|++.+-+--=+.-|.+. | .|+++++++++.+++|++.-||=+.++
T Consensus 144 -~~~~~-~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~ 221 (307)
T PRK05835 144 -NISVD-EKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRK 221 (307)
T ss_pred -Ccccc-cccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhh
Confidence 00000 001113467888888888999987765556677776 4 599999999999999999999999887
Q ss_pred ------------------HHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 536 ------------------HFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 536 ------------------Di~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
+++++.+ .|+..+=+++-+...- ...+++++
T Consensus 222 ~~~~~g~~~~~~~g~~~e~~~kai~-~GI~KiNi~T~l~~a~--~~~~~~~~ 270 (307)
T PRK05835 222 SYLDAGGDLKGSKGVPFEFLQESVK-GGINKVNTDTDLRIAF--IAEVRKVA 270 (307)
T ss_pred hhhhhccccccccCCCHHHHHHHHH-cCceEEEeChHHHHHH--HHHHHHHH
Confidence 6777774 7877776666553221 33445444
No 410
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=96.54 E-value=0.0017 Score=60.04 Aligned_cols=51 Identities=29% Similarity=0.436 Sum_probs=38.2
Q ss_pred CCCCCEEEECCCCCchHHHHHHH-h-hcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 83 ILNANRLIFPGVGAFAAAMDVLN-K-TGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 83 l~~~DGlILpGGg~~~~~~~~l~-~-~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
..+||+||||||.... ..+. . ..+.+.++++.+.++||.+||.|-.+|+.+
T Consensus 35 ~~~yDalilpGG~~~~---~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 35 PSDYDALILPGGHGGA---DDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp GGGESEEEEE-BTHHH---HHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred hhhCCEEEECCCCchh---hhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 4569999999986322 2222 2 357889999999999999999999999983
No 411
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.53 E-value=0.014 Score=59.82 Aligned_cols=67 Identities=21% Similarity=0.122 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCC--CcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVS--IPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~--ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
.+-++++.+.|++.|.+ | ....+.++++.+... +|+.|+||| +.+.+.++.+ +|++++++|+..|+.
T Consensus 198 leea~~A~~~gaDyI~l-D--------~~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~-~Gvd~IAvg~l~~sa 266 (277)
T PRK08072 198 EEQVREAVAAGADIIMF-D--------NRTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGG-TGVDYISLGFLTHSV 266 (277)
T ss_pred HHHHHHHHHcCCCEEEE-C--------CCCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHH-cCCCEEEEChhhcCC
Confidence 45567777899999987 1 255688888877654 677899999 8899999985 999999999999943
No 412
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=96.53 E-value=0.14 Score=52.84 Aligned_cols=210 Identities=14% Similarity=0.147 Sum_probs=125.6
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCC-CCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFP-LGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~-~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
..+.+..++.++. .|+.+.-..-.. .+-..-..+++..+++. .+||.+ .++ |..++|.+++.+++
T Consensus 32 ~avi~AAee~~sP--vIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~l-----HLD-----Hg~~~e~i~~ai~~ 99 (288)
T TIGR00167 32 NAVLEAAAEEKSP--VIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVAL-----HLD-----HGASEEDCAQAVKA 99 (288)
T ss_pred HHHHHHHHHHCCC--EEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEE-----ECC-----CCCCHHHHHHHHHc
Confidence 3455555566665 444554211111 12223455667777777 788864 222 56678889999999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHH---hCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR---VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
|.+-|.++.+.+.-. .|.+..+++.+ .+| +++-.--|.+... .++
T Consensus 100 GftSVMiDgS~lp~e---------eNi~~T~~vv~~Ah~~g-----v~VEaElG~vgg~--------------e~~---- 147 (288)
T TIGR00167 100 GFSSVMIDGSHEPFE---------ENIELTKKVVERAHKMG-----VSVEAELGTLGGE--------------EDG---- 147 (288)
T ss_pred CCCEEEecCCCCCHH---------HHHHHHHHHHHHHHHcC-----CEEEEEEeeccCc--------------cCC----
Confidence 999999965554311 13445555543 354 3333222211000 000
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC----CCHHHHHHHHhhCCCcEEEecCCCCH-HHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG----FDMDLIKLISDAVSIPVIASSGAGAV-EHFS 538 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G----~d~~li~~l~~~~~ipVIasGGi~s~-eDi~ 538 (578)
+... -.+..-.++.+..+-+++-|++.+-+--=+.-|.+.+ .|+++++++.+.+++|++.-||-+.+ ++++
T Consensus 148 ---~~~~-~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~ 223 (288)
T TIGR00167 148 ---VSVA-DESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIK 223 (288)
T ss_pred ---cccc-cccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHH
Confidence 0000 0011123567777777788999988665566666644 78999999999999999999999888 4688
Q ss_pred HHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
++.+ .|+..+=+++.+...- ...+++++.
T Consensus 224 ~ai~-~Gi~KiNi~T~l~~a~--~~~~~~~~~ 252 (288)
T TIGR00167 224 KAIS-LGVVKVNIDTELQIAF--AAAVRNYYA 252 (288)
T ss_pred HHHH-cCCeEEEcChHHHHHH--HHHHHHHHH
Confidence 8875 8988887777653221 334455443
No 413
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=96.47 E-value=0.012 Score=57.33 Aligned_cols=80 Identities=23% Similarity=0.213 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-----ccEEEeCCccccccCCCCccChHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-----VPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-----~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
++.+.++.+... ++.+++.-+.....+..-....++.++++++.+. +|+.++|||+. ++ +++
T Consensus 116 ~~~~~~~~~~~~-~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-en-----------v~~ 182 (211)
T cd00429 116 TPVEVLEPYLDE-VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ET-----------IPL 182 (211)
T ss_pred CCHHHHHHHHhh-CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HH-----------HHH
Confidence 356677776544 8888775554211111112233455666665553 89999999997 44 999
Q ss_pred HHHcCcceeecchhhhcc
Q 045794 383 YFRSGADKISIGSDAVYA 400 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~ 400 (578)
+++.|+|.+++||+.++.
T Consensus 183 ~~~~gad~iivgsai~~~ 200 (211)
T cd00429 183 LAEAGADVLVAGSALFGS 200 (211)
T ss_pred HHHcCCCEEEECHHHhCC
Confidence 999999999999999874
No 414
>PRK04155 chaperone protein HchA; Provisional
Probab=96.46 E-value=0.01 Score=61.20 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=38.7
Q ss_pred CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 84 LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 84 ~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.+||+||||||.....++. ....+.+.++++.++++||.+||-|-++|..+
T Consensus 146 ~dYDaV~iPGG~g~~~dL~--~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 146 SDYAAVFIPGGHGALIGLP--ESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred ccccEEEECCCCchHHHHh--hCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 5899999999843222222 23357788999999999999999999877763
No 415
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.46 E-value=0.004 Score=64.97 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+.+++++.+.+.|++.|.| .---..... ....+.+.|+++++.+.+||.+-|+|.+.+| ++++++.
T Consensus 138 ~~~~~~~~~l~~~G~~~i~v-H~Rt~~q~~-~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d-----------~~~~~~~ 204 (309)
T PF01207_consen 138 EETIEFARILEDAGVSAITV-HGRTRKQRY-KGPADWEAIAEIKEALPIPVIANGDIFSPED-----------AERMLEQ 204 (309)
T ss_dssp HHHHHHHHHHHHTT--EEEE-ECS-TTCCC-TS---HHHHHHCHHC-TSEEEEESS--SHHH-----------HHHHCCC
T ss_pred hHHHHHHHHhhhcccceEEE-ecCchhhcC-CcccchHHHHHHhhcccceeEEcCccCCHHH-----------HHHHHHh
Confidence 35789999999999997764 332111222 2378899999999999999999999999977 8888877
Q ss_pred -Ccceeecchhhhccc
Q 045794 387 -GADKISIGSDAVYAA 401 (578)
Q Consensus 387 -Ga~~vv~gt~~~~~~ 401 (578)
|+|.|.+|..++.||
T Consensus 205 tg~dgvMigRgal~nP 220 (309)
T PF01207_consen 205 TGADGVMIGRGALGNP 220 (309)
T ss_dssp H-SSEEEESHHHCC-C
T ss_pred cCCcEEEEchhhhhcC
Confidence 999999999999953
No 416
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=96.45 E-value=0.0094 Score=60.03 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..|.+.++.+.+.. +.+.+.=.++-.++.. .....+.++++++.. ..||++||||++.++ ++++.+
T Consensus 139 ~T~~e~l~~~~~~~-~~~l~msv~~~~g~~~-~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~-----------i~~~~~ 205 (244)
T PRK13125 139 KFPDLLIHRLSKLS-PLFIYYGLRPATGVPL-PVSVERNIKRVRNLVGNKYLVVGFGLDSPED-----------ARDALS 205 (244)
T ss_pred CCCHHHHHHHHHhC-CCEEEEEeCCCCCCCc-hHHHHHHHHHHHHhcCCCCEEEeCCcCCHHH-----------HHHHHH
Confidence 35567777777664 4444445544323221 123344677777665 479999999999866 999999
Q ss_pred cCcceeecchhhhc
Q 045794 386 SGADKISIGSDAVY 399 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~ 399 (578)
+|||.+++||+.++
T Consensus 206 ~gaD~vvvGSai~~ 219 (244)
T PRK13125 206 AGADGVVVGTAFIE 219 (244)
T ss_pred cCCCEEEECHHHHH
Confidence 99999999998875
No 417
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=96.45 E-value=0.15 Score=53.62 Aligned_cols=218 Identities=11% Similarity=0.062 Sum_probs=124.7
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
...+.+..++.+.. .|+.+....-...+...-..+++.+++... +||.+ .++ |..+++.+++.+++|
T Consensus 29 ~~aii~AAEe~~sP--vIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPVal-----HLD-----Hg~~~e~i~~Ai~~G 96 (347)
T TIGR01521 29 MRAIMEAADKTDSP--VILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVM-----HQD-----HGNSPATCQRAIQLG 96 (347)
T ss_pred HHHHHHHHHHhCCC--EEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEE-----ECC-----CCCCHHHHHHHHHcC
Confidence 33455555566665 444554211111222334556777777775 89864 332 566788899999999
Q ss_pred cceeecchhhhccch---hhhhccccCCchHHHHH---HHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 388 ADKISIGSDAVYAAE---DYLKTGVKTGKSSLEQI---SRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 388 a~~vv~gt~~~~~~~---~~~~~~~~~~~~~l~~~---~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
..-|.+..+.+.+.+ .|- .|....+++ +..+| +++-.--|.+- -...+..|+
T Consensus 97 FtSVMiDgS~l~~~~~~~p~e-----ENI~~Tkevve~Ah~~G-----vsVEaELG~ig-----------g~e~~~~g~- 154 (347)
T TIGR01521 97 FTSVMMDGSLREDAKTPADYD-----YNVRVTAEVVAFAHAVG-----ASVEGELGCLG-----------SLETGMGEA- 154 (347)
T ss_pred CCEEeecCcCCcccCCCCCHH-----HHHHHHHHHHHHHHHcC-----CeEEEEeeecc-----------ccccccccc-
Confidence 999999554431100 010 123344444 34455 23332222110 000000000
Q ss_pred cceEEEEEcc--cc-----cCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC--------CCHHHHHHHHhhC-CCcE
Q 045794 462 YAWYQCTVNG--GR-----EGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG--------FDMDLIKLISDAV-SIPV 525 (578)
Q Consensus 462 ~~~~~~~~~g--~~-----~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G--------~d~~li~~l~~~~-~ipV 525 (578)
..+ .. ...-.++.+..+-+++-|++.+-+--=+.-|.+++ .|+++++++.+.+ ++|+
T Consensus 155 -------~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPL 227 (347)
T TIGR01521 155 -------EDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHL 227 (347)
T ss_pred -------ccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCE
Confidence 000 00 01123678888888889999887554455666654 7899999999999 7999
Q ss_pred EEecCCCCH----------------------HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 526 IASSGAGAV----------------------EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 526 IasGGi~s~----------------------eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+.-||=+.+ ++++++.+ .|+..|=+++-+...- ...+++++.
T Consensus 228 VLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~-~GI~KVNi~Tdl~~a~--~~~~~~~~~ 291 (347)
T TIGR01521 228 VMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIK-YGVRKVNIDTDLRLAS--TAAFRRFAA 291 (347)
T ss_pred EEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHH-CCCeeEEeChHHHHHH--HHHHHHHHH
Confidence 999998865 78888885 8988887777553221 334455553
No 418
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.42 E-value=0.017 Score=59.01 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
.+-++++.+.|++.|.+=.+ ..+.++++.+.. ++|+.++||| +++.+.++.+ +|++++++++.+|+.
T Consensus 192 ~eea~~A~~~gaDyI~ld~~---------~~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~-~Gvd~Iav~sl~~~a 260 (268)
T cd01572 192 LEQLKEALEAGADIIMLDNM---------SPEELREAVALLKGRVLLEASGGI-TLENIRAYAE-TGVDYISVGALTHSA 260 (268)
T ss_pred HHHHHHHHHcCCCEEEECCc---------CHHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHH-cCCCEEEEEeeecCC
Confidence 45577778899999887433 367788877655 5899999999 7899999985 999999999999943
No 419
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.39 E-value=0.012 Score=60.87 Aligned_cols=84 Identities=15% Similarity=0.011 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHc--CCCeEEEE---------ecccCC------C---CCCC---CchhHHHHHHHhhhc--cccEEEeCC
Q 045794 308 KPVELARQYYKE--GADEISFL---------NITGFR------D---FPLG---DLPMLQVLRLTSENV--FVPLTVGGG 362 (578)
Q Consensus 308 ~p~~~a~~~~~~--g~~~i~~~---------Dl~~~~------~---~~~~---~~~~~~~i~~i~~~~--~~pi~~gGG 362 (578)
+..++|+...+. |++.|.++ |.++.+ . +..+ +...++.|+++++.+ .+||..-||
T Consensus 172 ~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GG 251 (294)
T cd04741 172 QFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGG 251 (294)
T ss_pred HHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCC
Confidence 456788888888 89988863 442221 0 0000 223567788888888 499998999
Q ss_pred ccccccCCCCccChHHHHHHHHHcCcceeecchhhhccch
Q 045794 363 IRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAE 402 (578)
Q Consensus 363 ir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~ 402 (578)
|.+.+| +.+++.+||+-|-++|+++...|
T Consensus 252 I~s~~d-----------a~e~l~aGA~~Vqv~ta~~~~gp 280 (294)
T cd04741 252 VLDGRG-----------AFRMRLAGASAVQVGTALGKEGP 280 (294)
T ss_pred CCCHHH-----------HHHHHHcCCCceeEchhhhhcCc
Confidence 999987 88888899999999999996433
No 420
>PLN02979 glycolate oxidase
Probab=96.38 E-value=0.014 Score=61.64 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+-++.+.+.|++.|++-+-..-+...++ -++.+.++++.+ .+|||++|||++-.|+.+++. +||++|++|+.+..
T Consensus 234 ~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALA-LGAdaV~iGrp~L~ 312 (366)
T PLN02979 234 GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVF 312 (366)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 57788999999999997765322222222 356777776665 499999999999999999995 99999999998763
No 421
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.37 E-value=0.017 Score=56.09 Aligned_cols=79 Identities=23% Similarity=0.215 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+|.+..+ ..+.|++.+.+ ..... .+..+.....+.++++.+...+|++++|||+ .+ ++++++++
T Consensus 114 ~t~~e~~~-~~~~~~d~v~~-~~~~~-~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~-~~-----------~i~~~~~~ 178 (202)
T cd04726 114 EDPEKRAK-LLKLGVDIVIL-HRGID-AQAAGGWWPEDDLKKVKKLLGVKVAVAGGIT-PD-----------TLPEFKKA 178 (202)
T ss_pred CCHHHHHH-HHHCCCCEEEE-cCccc-ccccCCCCCHHHHHHHHhhcCCCEEEECCcC-HH-----------HHHHHHhc
Confidence 57888887 66789997665 22110 0111113346778888766689999999997 54 49999999
Q ss_pred Ccceeecchhhhcc
Q 045794 387 GADKISIGSDAVYA 400 (578)
Q Consensus 387 Ga~~vv~gt~~~~~ 400 (578)
||+.+++||+.++.
T Consensus 179 Gad~vvvGsai~~~ 192 (202)
T cd04726 179 GADIVIVGRAITGA 192 (202)
T ss_pred CCCEEEEeehhcCC
Confidence 99999999998763
No 422
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.34 E-value=0.099 Score=53.79 Aligned_cols=190 Identities=17% Similarity=0.184 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEecc-----cCCC-CCCCCchhHHHHHHHhhhccccEEEe--CCccccccCCCCccChHHH
Q 045794 308 KPVELARQYYKEGADEISFLNIT-----GFRD-FPLGDLPMLQVLRLTSENVFVPLTVG--GGIRDFTDANGRHYSSLEV 379 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~-----~~~~-~~~~~~~~~~~i~~i~~~~~~pi~~g--GGir~~~d~~~~~~~~~~~ 379 (578)
|+. -|+...+.|++-+++--.. +..| +.......++.+++|.+.+++||.++ .|-.+... -...
T Consensus 22 Da~-SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~-------v~~t 93 (285)
T TIGR02317 22 NAM-AALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFN-------VART 93 (285)
T ss_pred CHH-HHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHH-------HHHH
Confidence 543 3566677899988874211 2222 22234567888999999999999886 44444332 2356
Q ss_pred HHHHHHcCcceeec-chhh-----------hccchhhhhccccCCchHHHHHHHhC-CCCeEEEEEeccccccCCCCccc
Q 045794 380 ASEYFRSGADKISI-GSDA-----------VYAAEDYLKTGVKTGKSSLEQISRVY-GNQAVVVSIDPRRVYITHPNDVE 446 (578)
Q Consensus 380 ~~~~l~~Ga~~vv~-gt~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~iv~slD~~~~~~~~~~~~~ 446 (578)
++++.++|+.-|.| .... +...++++ +-|+.+.+.- +.+.+++ +|...
T Consensus 94 v~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~--------~kI~Aa~~a~~~~d~~Ii---ARTDa-------- 154 (285)
T TIGR02317 94 VREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMV--------DKIAAAVDAKRDEDFVII---ARTDA-------- 154 (285)
T ss_pred HHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHH--------HHHHHHHHhccCCCEEEE---EEcCc--------
Confidence 89999999988888 3221 11111221 2233332221 2222221 22110
Q ss_pred cceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcE-
Q 045794 447 FKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPV- 525 (578)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipV- 525 (578)
....|. + +.++-++.+.+.|++.|.+.... +.+.++++.+.++.|+
T Consensus 155 --------------------~~~~g~-d----eAI~Ra~ay~~AGAD~vfi~g~~--------~~e~i~~~~~~i~~Pl~ 201 (285)
T TIGR02317 155 --------------------RAVEGL-D----AAIERAKAYVEAGADMIFPEALT--------SLEEFRQFAKAVKVPLL 201 (285)
T ss_pred --------------------ccccCH-H----HHHHHHHHHHHcCCCEEEeCCCC--------CHHHHHHHHHhcCCCEE
Confidence 001111 1 35778899999999999986532 5688899999888898
Q ss_pred --EEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 526 --IASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 526 --IasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+..+|-.-.-++.+|.+ .|+.-|+.+..+...
T Consensus 202 ~n~~~~~~~p~~s~~eL~~-lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 202 ANMTEFGKTPLFTADELRE-AGYKMVIYPVTAFRA 235 (285)
T ss_pred EEeccCCCCCCCCHHHHHH-cCCcEEEEchHHHHH
Confidence 34444322235667664 899888888765543
No 423
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.32 E-value=0.11 Score=53.51 Aligned_cols=189 Identities=18% Similarity=0.210 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEec--c----cCCC-CCCCCchhHHHHHHHhhhccccEEEe--CCccccccCCCCccChHH
Q 045794 308 KPVELARQYYKEGADEISFLNI--T----GFRD-FPLGDLPMLQVLRLTSENVFVPLTVG--GGIRDFTDANGRHYSSLE 378 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl--~----~~~~-~~~~~~~~~~~i~~i~~~~~~pi~~g--GGir~~~d~~~~~~~~~~ 378 (578)
|+. -|+...+.|++-+++-=. . |..| +.......++.+++|.+.+++||.++ .|-.+... -..
T Consensus 26 Da~-SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~-------v~r 97 (292)
T PRK11320 26 NAY-HALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFN-------IAR 97 (292)
T ss_pred CHH-HHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHH-------HHH
Confidence 553 356677789988876422 1 2222 22234567788999999999999886 34334432 245
Q ss_pred HHHHHHHcCcceeec-chhh-----------hccchhhhhccccCCchHHHHHHHh-CCCCeEEEEEeccccccCCCCcc
Q 045794 379 VASEYFRSGADKISI-GSDA-----------VYAAEDYLKTGVKTGKSSLEQISRV-YGNQAVVVSIDPRRVYITHPNDV 445 (578)
Q Consensus 379 ~~~~~l~~Ga~~vv~-gt~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~iv~slD~~~~~~~~~~~~ 445 (578)
.++++.++||.-|.| +... +...++++ +-|+.+.+. -+.+.+++ +|...
T Consensus 98 ~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~--------~kI~Aa~~a~~~~d~~Ii---ARTDa------- 159 (292)
T PRK11320 98 TVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMV--------DRIKAAVDARTDPDFVIM---ARTDA------- 159 (292)
T ss_pred HHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHH--------HHHHHHHHhccCCCeEEE---EecCc-------
Confidence 689999999988887 3221 11111121 222222221 13332222 12110
Q ss_pred ccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcE
Q 045794 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPV 525 (578)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipV 525 (578)
....|+. ..++-++.+.+.|++.|.+.... +.+.++++.+.++.|+
T Consensus 160 ---------------------~~~~g~d-----eAI~Ra~aY~eAGAD~ifi~~~~--------~~~~i~~~~~~~~~Pl 205 (292)
T PRK11320 160 ---------------------LAVEGLD-----AAIERAQAYVEAGADMIFPEAMT--------ELEMYRRFADAVKVPI 205 (292)
T ss_pred ---------------------ccccCHH-----HHHHHHHHHHHcCCCEEEecCCC--------CHHHHHHHHHhcCCCE
Confidence 0011211 35778899999999999987643 5789999999888898
Q ss_pred E---EecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 526 I---ASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 526 I---asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
. ..+|-.-.-++.+|.+ .|+.-|+.+...+.
T Consensus 206 ~~n~~~~~~~p~~s~~~L~~-lGv~~v~~~~~~~~ 239 (292)
T PRK11320 206 LANITEFGATPLFTTEELAS-AGVAMVLYPLSAFR 239 (292)
T ss_pred EEEeccCCCCCCCCHHHHHH-cCCcEEEEChHHHH
Confidence 3 3445332234666654 89888887776654
No 424
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=96.29 E-value=0.028 Score=54.35 Aligned_cols=86 Identities=9% Similarity=0.127 Sum_probs=54.3
Q ss_pred cEEEEEECC-C--CCHHHHHHHHHHCCCeEEEeCC------c---------------cCC--CCCCEEEECCCCCchHHH
Q 045794 48 SVVTLLDYG-A--GNVRSVRNAIRHLGFGIKDVQT------P---------------EDI--LNANRLIFPGVGAFAAAM 101 (578)
Q Consensus 48 ~~I~vld~~-~--g~~~~i~~~L~~~Gv~v~~v~~------~---------------~dl--~~~DGlILpGGg~~~~~~ 101 (578)
++|+|+=++ . --.....+.|++.|+++.++.. + +++ .++|.|++|||.......
T Consensus 3 ~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~~ 82 (196)
T PRK11574 3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECF 82 (196)
T ss_pred ceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhhh
Confidence 345555432 1 1233456778888877766421 0 112 369999999984222211
Q ss_pred HHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 102 DVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 102 ~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
. ....+.++|+++.+++++|.+||.|-.+|..
T Consensus 83 ~--~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~ 114 (196)
T PRK11574 83 R--DSPLLVETVRQFHRSGRIVAAICAAPATVLV 114 (196)
T ss_pred h--hCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 1 1124788999999999999999999986544
No 425
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=96.29 E-value=0.22 Score=48.88 Aligned_cols=177 Identities=21% Similarity=0.217 Sum_probs=116.8
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccCh------HHHHHHHH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSS------LEVASEYF 384 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~------~~~~~~~l 384 (578)
+-+....+.||++|=+-|-=+. +| -.+...+++...+...+|+.+ =||--.- -|.|++ .++++.+.
T Consensus 12 ~~l~~A~~~GAdRiELC~~La~-GG---~TPSyG~~k~a~~~~~ipv~~--MIRPRgG--dFvY~~~E~~iM~~DI~~~~ 83 (241)
T COG3142 12 EGLLAAQAAGADRIELCDALAE-GG---LTPSYGVIKEAVELSKIPVYV--MIRPRGG--DFVYSDDELEIMLEDIRLAR 83 (241)
T ss_pred hhHHHHHHcCCceeehhhcccc-CC---CCCCHHHHHHHHhhcCCceEE--EEecCCC--CcccChHHHHHHHHHHHHHH
Confidence 5556667889999988654332 22 367789999999888888876 3443210 155555 35788888
Q ss_pred HcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
++|++-||+|...-.. .++.+.++++.+.=++=-+.+ | +.||.
T Consensus 84 ~lG~~GVV~G~lt~dg---------~iD~~~le~Li~aA~gL~vTF----------------H---rAFD~--------- 126 (241)
T COG3142 84 ELGVQGVVLGALTADG---------NIDMPRLEKLIEAAGGLGVTF----------------H---RAFDE--------- 126 (241)
T ss_pred HcCCCcEEEeeecCCC---------ccCHHHHHHHHHHccCCceee----------------e---hhhhh---------
Confidence 9999999999766553 345577888876433211222 0 12222
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~ 541 (578)
-.++.+.++++.++|+.+|+-..= ..+-. .++.++++.+.. .+.|+++||| +.+-+..+.
T Consensus 127 ------------~~d~~~ale~li~~Gv~RILTsGg----~~sa~eg~~~l~~li~~a~gri~Im~GaGV-~~~N~~~l~ 189 (241)
T COG3142 127 ------------CPDPLEALEQLIELGVERILTSGG----KASALEGLDLLKRLIEQAKGRIIIMAGAGV-RAENIAELV 189 (241)
T ss_pred ------------cCCHHHHHHHHHHCCCcEEecCCC----cCchhhhHHHHHHHHHHhcCCEEEEeCCCC-CHHHHHHHH
Confidence 125899999999999999984432 22222 467777775544 5677888888 568888886
Q ss_pred HhcCchHH
Q 045794 542 RKTNASAA 549 (578)
Q Consensus 542 ~~~G~~gv 549 (578)
..+|+.-+
T Consensus 190 ~~tg~~e~ 197 (241)
T COG3142 190 LLTGVTEV 197 (241)
T ss_pred HhcCchhh
Confidence 66886654
No 426
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=96.28 E-value=0.11 Score=53.80 Aligned_cols=205 Identities=14% Similarity=0.134 Sum_probs=117.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEE--ecc----cCCC-CCCCCchhHHHHHHHhhhccccEEEe--CCccccccCCCCccChH
Q 045794 307 GKPVELARQYYKEGADEISFL--NIT----GFRD-FPLGDLPMLQVLRLTSENVFVPLTVG--GGIRDFTDANGRHYSSL 377 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~--Dl~----~~~~-~~~~~~~~~~~i~~i~~~~~~pi~~g--GGir~~~d~~~~~~~~~ 377 (578)
-|+. -|+...+.|++-++.- -.. |..| +.......+..+++|++.+.+||.++ .|-.+..+ ..
T Consensus 24 ~Da~-SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~-------v~ 95 (294)
T TIGR02319 24 YDAL-SAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMS-------VW 95 (294)
T ss_pred cCHH-HHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHH-------HH
Confidence 3553 3677778899988873 222 2222 22334567888999999999999886 34433322 23
Q ss_pred HHHHHHHHcCcceeec-chhhh-----------ccchhhhhccccCCchHHHHHHHhC-CCCeEE-EEEeccccccCCCC
Q 045794 378 EVASEYFRSGADKISI-GSDAV-----------YAAEDYLKTGVKTGKSSLEQISRVY-GNQAVV-VSIDPRRVYITHPN 443 (578)
Q Consensus 378 ~~~~~~l~~Ga~~vv~-gt~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~iv-~slD~~~~~~~~~~ 443 (578)
..++++.++|+.-|.| ....- -..++++ +-|+.+.+.- ..+.++ +=.|.+.
T Consensus 96 r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~--------~kI~Aa~~A~~~~d~~I~ARTDa~~------- 160 (294)
T TIGR02319 96 RATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMT--------GKIEAAVEAREDEDFTIIARTDARE------- 160 (294)
T ss_pred HHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHH--------HHHHHHHHhccCCCeEEEEEecccc-------
Confidence 5689999999988888 32211 1111121 2222222211 112222 2122211
Q ss_pred ccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCC
Q 045794 444 DVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSI 523 (578)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~i 523 (578)
..|+ -..++-++.+.+.|++.|.+... .+.+.++++.+.++.
T Consensus 161 -------------------------~~g~-----deaI~Ra~aY~eAGAD~ifi~~~--------~~~~ei~~~~~~~~~ 202 (294)
T TIGR02319 161 -------------------------SFGL-----DEAIRRSREYVAAGADCIFLEAM--------LDVEEMKRVRDEIDA 202 (294)
T ss_pred -------------------------cCCH-----HHHHHHHHHHHHhCCCEEEecCC--------CCHHHHHHHHHhcCC
Confidence 0111 13577888999999999998753 256889999998888
Q ss_pred cE---EEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCC-CHHHHHHHHHhCC
Q 045794 524 PV---IASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEV-PIQSVKEHLYKEG 573 (578)
Q Consensus 524 pV---IasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~-~~~~~~~~l~~~~ 573 (578)
|+ +..||-.-.-.+.+|.+ .|+.-|+.+..+....+ .+.+..+.|++.|
T Consensus 203 P~~~nv~~~~~~p~~s~~eL~~-lG~~~v~~~~~~~~aa~~a~~~~~~~l~~~G 255 (294)
T TIGR02319 203 PLLANMVEGGKTPWLTTKELES-IGYNLAIYPLSGWMAAASVLRKLFTELREAG 255 (294)
T ss_pred CeeEEEEecCCCCCCCHHHHHH-cCCcEEEEcHHHHHHHHHHHHHHHHHHHHcC
Confidence 87 45554333345777764 89888877765543222 1334444444444
No 427
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.26 E-value=0.19 Score=52.85 Aligned_cols=222 Identities=12% Similarity=0.118 Sum_probs=121.4
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
..+.+..++.++. .|+.+........+...-..+++..+++.. +||.+ .++ |.+++|.+++.+++|.
T Consensus 32 ~avi~AAee~~sP--vIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPVal-----HLD-----Hg~~~e~i~~ai~~Gf 99 (347)
T PRK09196 32 QAIMEAADETDSP--VILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVM-----HQD-----HGNSPATCQRAIQLGF 99 (347)
T ss_pred HHHHHHHHHhCCC--EEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEE-----ECC-----CCCCHHHHHHHHHcCC
Confidence 3455555555665 445554311111222333455666666664 88854 232 5667888999999999
Q ss_pred ceeecchhhhccc---hhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 389 DKISIGSDAVYAA---EDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 389 ~~vv~gt~~~~~~---~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
.-|.+..+.+.+- ..|- .|....+++. ..+| +++-.--|.+-. ..| +..|++.
T Consensus 100 tSVMiDgS~l~~~~~~~p~e-----ENI~~Tkevve~Ah~~G-----v~VEaELG~vgg----------~e~-~~~g~~~ 158 (347)
T PRK09196 100 TSVMMDGSLKADGKTPASYE-----YNVDVTRKVVEMAHACG-----VSVEGELGCLGS----------LET-GMGGEED 158 (347)
T ss_pred CEEEecCCCCcccCCCCCHH-----HHHHHHHHHHHHHHHcC-----CeEEEEEeeccC----------ccc-ccccccc
Confidence 9999955544110 0010 1234444443 4455 233322221100 000 0000000
Q ss_pred ceEEEEEcc--cccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC--------CCHHHHHHHHhhC-CCcEEEecCC
Q 045794 463 AWYQCTVNG--GREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG--------FDMDLIKLISDAV-SIPVIASSGA 531 (578)
Q Consensus 463 ~~~~~~~~g--~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G--------~d~~li~~l~~~~-~ipVIasGGi 531 (578)
.....+ ..+..-.++.+..+-+++-|++.+-+--=+.-|.+.+ .|+++++++.+.+ ++|++.-||=
T Consensus 159 ---~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgS 235 (347)
T PRK09196 159 ---GHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSS 235 (347)
T ss_pred ---CcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCC
Confidence 000000 0011123688888889999999877544455566543 6899999999999 7999999987
Q ss_pred CCH----------------------HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 532 GAV----------------------EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 532 ~s~----------------------eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+.+ |+++++.+ .|+..|=+++-+...- ...+++++.
T Consensus 236 G~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~-~GI~KINi~Tdl~~a~--~~~i~~~~~ 293 (347)
T PRK09196 236 SVPQELLDIINEYGGDMPETYGVPVEEIQEGIK-HGVRKVNIDTDLRLAM--TGAIRRFLA 293 (347)
T ss_pred CCCHHHHHHHHHhcCCccccCCCCHHHHHHHHH-CCCceEEeChHHHHHH--HHHHHHHHH
Confidence 653 66888875 8888877676553221 334445443
No 428
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=96.26 E-value=0.011 Score=62.74 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEe--c-ccCC--CCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLN--I-TGFR--DFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~D--l-~~~~--~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+.+++++.+.+.|+|.|++.- . .... .....++.++...+++++.+++||.++|++++.++ ++
T Consensus 224 ~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~-----------a~ 292 (353)
T cd02930 224 EEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEV-----------AE 292 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHH-----------HH
Confidence 3567899999999999998721 1 1110 00111234577788999999999999999999876 99
Q ss_pred HHHHcC-cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 382 EYFRSG-ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 382 ~~l~~G-a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
++++.| +|-|.+|..++.+ |++++++.+
T Consensus 293 ~~i~~g~~D~V~~gR~~l~d------------P~~~~k~~~ 321 (353)
T cd02930 293 RLLADGDADMVSMARPFLAD------------PDFVAKAAA 321 (353)
T ss_pred HHHHCCCCChhHhhHHHHHC------------ccHHHHHHh
Confidence 999987 9999999999985 466677765
No 429
>PLN02826 dihydroorotate dehydrogenase
Probab=96.26 E-value=0.02 Score=61.91 Aligned_cols=87 Identities=22% Similarity=0.211 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEe--------ccc--C---CCCCCC---CchhHHHHHHHhhhc--cccEEEeCCccccccC
Q 045794 308 KPVELARQYYKEGADEISFLN--------ITG--F---RDFPLG---DLPMLQVLRLTSENV--FVPLTVGGGIRDFTDA 369 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~D--------l~~--~---~~~~~~---~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~ 369 (578)
+..++|+...+.|++.|.+++ +.. . .++..+ +...+++++++.+.+ .+||..-|||.+-+|
T Consensus 277 di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~D- 355 (409)
T PLN02826 277 DLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGED- 355 (409)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHH-
Confidence 788999999999999999987 211 0 011111 234688899998887 699999999999977
Q ss_pred CCCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 370 NGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 370 ~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
+-+.+.+||+-|=++|+.+.+.|.++
T Consensus 356 ----------a~e~i~AGAs~VQv~Ta~~~~Gp~~i 381 (409)
T PLN02826 356 ----------AYKKIRAGASLVQLYTAFAYEGPALI 381 (409)
T ss_pred ----------HHHHHHhCCCeeeecHHHHhcCHHHH
Confidence 89999999999999999988644433
No 430
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=96.23 E-value=0.19 Score=47.97 Aligned_cols=194 Identities=12% Similarity=0.090 Sum_probs=118.4
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcccc--EEEeCCccccccCCCCccChHHHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVP--LTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~p--i~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
+.+-.+-++++.++|+||||+==.|+..- .+-.--..+++.+++.++.+ +.+===+.+.++ -+..+
T Consensus 16 fanL~~e~~~~l~~GadwlHlDVMDg~FV--pNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq----------~V~~~ 83 (224)
T KOG3111|consen 16 FANLAAECKKMLDAGADWLHLDVMDGHFV--PNITFGPPVVESLRKHTGADPFFDVHMMVENPEQ----------WVDQM 83 (224)
T ss_pred hHHHHHHHHHHHHcCCCeEEEeeeccccc--CCcccchHHHHHHHhccCCCcceeEEEeecCHHH----------HHHHH
Confidence 45667778888999999999644455321 11111135677777754333 111112345553 57888
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
-.+||+.+-+-.++.++.. ++++++.++ | -++-++| +-
T Consensus 84 a~agas~~tfH~E~~q~~~-----------~lv~~ir~~-G-mk~G~al--kP--------------------------- 121 (224)
T KOG3111|consen 84 AKAGASLFTFHYEATQKPA-----------ELVEKIREK-G-MKVGLAL--KP--------------------------- 121 (224)
T ss_pred HhcCcceEEEEEeeccCHH-----------HHHHHHHHc-C-CeeeEEe--CC---------------------------
Confidence 8999999999988877532 556666543 3 2333333 22
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCH---HHHHHHHhhCCCcEE-EecCCCCHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDM---DLIKLISDAVSIPVI-ASSGAGAVEHFSD 539 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~---~li~~l~~~~~ipVI-asGGi~s~eDi~~ 539 (578)
+ +.++.+..+.+ -++.++++.+.-.=-.+-+-- .-++.+++...-+.| +-||+ +++.+.+
T Consensus 122 -------------g-T~Ve~~~~~~~-~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv-~~~ti~~ 185 (224)
T KOG3111|consen 122 -------------G-TPVEDLEPLAE-HVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGV-GPSTIDK 185 (224)
T ss_pred -------------C-CcHHHHHHhhc-cccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCc-CcchHHH
Confidence 1 22444444444 378899888765322233322 445556666655556 99999 5688999
Q ss_pred HHHhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 540 VFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
+.+ +||+.++.||++.. .-+..++.+.|+.
T Consensus 186 ~a~-AGAN~iVaGsavf~-a~d~~~vi~~lr~ 215 (224)
T KOG3111|consen 186 AAE-AGANMIVAGSAVFG-AADPSDVISLLRN 215 (224)
T ss_pred HHH-cCCCEEEecceeec-CCCHHHHHHHHHH
Confidence 885 99999999999864 4445566665554
No 431
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.23 E-value=0.051 Score=55.84 Aligned_cols=195 Identities=13% Similarity=0.135 Sum_probs=119.7
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhcc--ccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVF--VPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~--~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
..+.+..++.+.+ .|+.+.-..-...+ -..-..+++.++++.. +||.+ .++ |..++|.+++.+++
T Consensus 32 ~avi~AAee~~sP--vIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~l-----HLD-----Hg~~~e~i~~ai~~ 99 (286)
T PRK08610 32 QAILEASQEENAP--VILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAI-----HLD-----HGSSFEKCKEAIDA 99 (286)
T ss_pred HHHHHHHHHHCCC--EEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEE-----ECC-----CCCCHHHHHHHHHc
Confidence 3455555566665 44455421001111 1223456777777765 78864 232 56678889999999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
|..-|.++.+.+.-. .|.+..+++. ..+| +++-.--|.+... .++.
T Consensus 100 GftSVM~DgS~l~~e---------eNi~~T~~vve~Ah~~g-----v~VEaElG~vgg~--------------ed~~--- 148 (286)
T PRK08610 100 GFTSVMIDASHSPFE---------ENVATTKKVVEYAHEKG-----VSVEAELGTVGGQ--------------EDDV--- 148 (286)
T ss_pred CCCEEEEeCCCCCHH---------HHHHHHHHHHHHHHHcC-----CEEEEEEeccCCc--------------cCCC---
Confidence 999999955444311 1334444444 4455 3343322221000 0000
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCH-HHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAV-EHFSD 539 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~-eDi~~ 539 (578)
. .....-.++.+..+-+++-|++.+-+--=+.-|.++| .|+++++++.+.+++|++.-||-+.+ +++++
T Consensus 149 ------~-~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ 221 (286)
T PRK08610 149 ------V-ADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQK 221 (286)
T ss_pred ------C-CcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHH
Confidence 0 0011124688888888889999887665567777766 48999999999999999999999888 56777
Q ss_pred HHHhcCchHHhhhhhh
Q 045794 540 VFRKTNASAALAAGIF 555 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~ 555 (578)
+.+ .|+..+=+++.+
T Consensus 222 ai~-~GI~KiNi~T~l 236 (286)
T PRK08610 222 AIP-FGTAKINVNTEN 236 (286)
T ss_pred HHH-CCCeEEEeccHH
Confidence 774 898888777765
No 432
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.22 E-value=0.029 Score=57.40 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
.+-++++.+.|++.|.+ | .+..+.++++.+.. ++|+.++||| +++.+.++.+ +|+|++++|+..|+-
T Consensus 199 leea~eA~~~gaD~I~L-D--------~~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~-tGvD~Isvg~lt~s~ 267 (277)
T PRK05742 199 LDELRQALAAGADIVML-D--------ELSLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAE-TGVDYISIGAMTKDV 267 (277)
T ss_pred HHHHHHHHHcCCCEEEE-C--------CCCHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHH-cCCCEEEEChhhcCC
Confidence 55677778999998866 3 23556777776655 7899999999 7899999985 999999999999875
Q ss_pred C
Q 045794 559 E 559 (578)
Q Consensus 559 ~ 559 (578)
+
T Consensus 268 ~ 268 (277)
T PRK05742 268 K 268 (277)
T ss_pred c
Confidence 4
No 433
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=96.20 E-value=0.032 Score=56.87 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCC--CcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVS--IPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~--ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
++-++++.+.|++.|.+-. +..+.++++.+... +|+.++||| +.+.+.++.+ +|++++.+|..+|..
T Consensus 188 ~eea~~A~~~gaDyI~ld~---------~~~e~lk~~v~~~~~~ipi~AsGGI-~~~ni~~~a~-~Gvd~Isvgait~sa 256 (265)
T TIGR00078 188 LEEAEEAAEAGADIIMLDN---------MKPEEIKEAVQLLKGRVLLEASGGI-TLDNLEEYAE-TGVDVISSGALTHSV 256 (265)
T ss_pred HHHHHHHHHcCCCEEEECC---------CCHHHHHHHHHHhcCCCcEEEECCC-CHHHHHHHHH-cCCCEEEeCHHHcCC
Confidence 4567778899999887733 23466777666543 899999999 7899999985 999999998888844
Q ss_pred C
Q 045794 559 E 559 (578)
Q Consensus 559 ~ 559 (578)
+
T Consensus 257 ~ 257 (265)
T TIGR00078 257 P 257 (265)
T ss_pred C
Confidence 3
No 434
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=96.17 E-value=0.027 Score=55.45 Aligned_cols=79 Identities=24% Similarity=0.271 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.|| -+|+++.+.|+.-++-. -+--+.. ..-.|...|+.|.++.++||.+++||.+..| +....++
T Consensus 132 ~D~-v~akrL~d~GcaavMPl--gsPIGSg-~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSd-----------aa~AMEl 196 (247)
T PF05690_consen 132 DDP-VLAKRLEDAGCAAVMPL--GSPIGSG-RGIQNPYNLRIIIERADVPVIVDAGIGTPSD-----------AAQAMEL 196 (247)
T ss_dssp S-H-HHHHHHHHTT-SEBEEB--SSSTTT----SSTHHHHHHHHHHGSSSBEEES---SHHH-----------HHHHHHT
T ss_pred CCH-HHHHHHHHCCCCEEEec--ccccccC-cCCCCHHHHHHHHHhcCCcEEEeCCCCCHHH-----------HHHHHHc
Confidence 566 68999999999877653 2211211 1235667788888888999999999999987 9999999
Q ss_pred Ccceeecchhhhcc
Q 045794 387 GADKISIGSDAVYA 400 (578)
Q Consensus 387 Ga~~vv~gt~~~~~ 400 (578)
|+|-|.++|+....
T Consensus 197 G~daVLvNTAiA~A 210 (247)
T PF05690_consen 197 GADAVLVNTAIAKA 210 (247)
T ss_dssp T-SEEEESHHHHTS
T ss_pred CCceeehhhHHhcc
Confidence 99999999987763
No 435
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=96.16 E-value=0.017 Score=61.04 Aligned_cols=95 Identities=17% Similarity=0.096 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCC--CCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFR--DFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~--~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+.+++++.+.+.|+|.|++-- -... ......+.+.+..+++.+.+++||.+.|+|++.++ +++++
T Consensus 227 ~e~~~i~~~l~~~gvD~i~vs~-g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~-----------a~~~l 294 (337)
T PRK13523 227 QDYVQYAKWMKEQGVDLIDVSS-GAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQ-----------AEEIL 294 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEeCC-CCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHH-----------HHHHH
Confidence 4677899999999999888631 1100 00001234678888998889999999999999865 99999
Q ss_pred HcC-cceeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 385 RSG-ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 385 ~~G-a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
+.| +|-|.+|..++.| |++.+++.+..+.
T Consensus 295 ~~g~~D~V~~gR~~iad------------P~~~~k~~~~~~~ 324 (337)
T PRK13523 295 QNNRADLIFIGRELLRN------------PYFPRIAAKELGF 324 (337)
T ss_pred HcCCCChHHhhHHHHhC------------ccHHHHHHHHcCC
Confidence 987 9999999999985 4677888877754
No 436
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.021 Score=59.49 Aligned_cols=101 Identities=18% Similarity=0.214 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+-+++|+...+.|++.+.|===.+.+.+......+.+.|+.+.+.+. +|+.+-|+|.+.+| +.+.++
T Consensus 155 ~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d-----------~~~~~~ 223 (358)
T KOG2335|consen 155 EKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLED-----------VERCLK 223 (358)
T ss_pred HHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHH-----------HHHHHH
Confidence 356689999999999988874333322222233678999999999987 99999999999977 888887
Q ss_pred -cCcceeecchhhhccchhhh--hccccCCchHHHHH
Q 045794 386 -SGADKISIGSDAVYAAEDYL--KTGVKTGKSSLEQI 419 (578)
Q Consensus 386 -~Ga~~vv~gt~~~~~~~~~~--~~~~~~~~~~l~~~ 419 (578)
.||+.|..+-.++.|| ..+ .+..++..+.+++.
T Consensus 224 ~tG~dGVM~arglL~NP-a~F~~~~~~~~~~~~~~~~ 259 (358)
T KOG2335|consen 224 YTGADGVMSARGLLYNP-ALFLTAGYGPTPWGCVEEY 259 (358)
T ss_pred HhCCceEEecchhhcCc-hhhccCCCCCCHHHHHHHH
Confidence 8999999999999964 444 33444555555554
No 437
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.10 E-value=0.021 Score=59.85 Aligned_cols=92 Identities=10% Similarity=0.118 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCC------CchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLG------DLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEV 379 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~------~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~ 379 (578)
.+.+++++.+.+.|++.|.+==-.+...+..+ ...+.+.|+++++.+ .+||..-|||++.+|
T Consensus 141 ~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~d----------- 209 (318)
T TIGR00742 141 EFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQ----------- 209 (318)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHH-----------
Confidence 35678999999999997643211110111111 123678899998887 899999999999977
Q ss_pred HHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHh
Q 045794 380 ASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRV 422 (578)
Q Consensus 380 ~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (578)
+++.++ |||.|.+|..++.+ |-++.++.+.
T Consensus 210 a~~~l~-g~dgVMigRgal~n------------P~if~~~~~~ 239 (318)
T TIGR00742 210 IKQHLS-HVDGVMVGREAYEN------------PYLLANVDRE 239 (318)
T ss_pred HHHHHh-CCCEEEECHHHHhC------------CHHHHHHHHH
Confidence 888886 99999999999995 3566777653
No 438
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=96.10 E-value=0.0097 Score=55.91 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=39.1
Q ss_pred cCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 81 EDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 81 ~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.+..++|.||+|||... .. ......+.+++++..+++.+|.+||.|..+|+++
T Consensus 57 ~~~~~~D~lvvpg~~~~-~~--~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 57 DDAPDFDILVVPGGPGF-DA--AAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp CCCSCCSEEEEE-STTH-HH--HTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred hhcccCCEEEeCCCCCc-hh--cccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 34678999999998751 11 1112256788888888999999999999999993
No 439
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=96.09 E-value=0.024 Score=60.24 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+-++.+.+.|++.|++-+-..-....++ -++.+.++++.+ .+|||++|||++-.|+.+++. +||++|.+|+.+..
T Consensus 235 ~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALA-LGA~aV~iGr~~l~ 313 (367)
T PLN02493 235 GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVF 313 (367)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 67888999999999987664321111122 367777777665 499999999999999999995 99999999998763
No 440
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=96.08 E-value=0.031 Score=54.47 Aligned_cols=80 Identities=21% Similarity=0.208 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-----ccEEEeCCccccccCCCCccChHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-----VPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-----~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+|.+.++.+. .+++.+++.=.+....+..-....++.++++++.++ +|+.++|||+. + ++++
T Consensus 115 t~~e~~~~~~-~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~-e-----------nv~~ 181 (210)
T TIGR01163 115 TPLEFLEYVL-PDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVND-D-----------NARE 181 (210)
T ss_pred CCHHHHHHHH-hhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCH-H-----------HHHH
Confidence 5567777764 468887764333211111111334455566655433 78999999975 4 4999
Q ss_pred HHHcCcceeecchhhhcc
Q 045794 383 YFRSGADKISIGSDAVYA 400 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~ 400 (578)
+++.|||.+++||+.+..
T Consensus 182 l~~~gad~iivgsai~~~ 199 (210)
T TIGR01163 182 LAEAGADILVAGSAIFGA 199 (210)
T ss_pred HHHcCCCEEEEChHHhCC
Confidence 999999999999999863
No 441
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=96.06 E-value=0.41 Score=47.09 Aligned_cols=186 Identities=18% Similarity=0.141 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH-c
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR-S 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~-~ 386 (578)
++ +-|+...+.|+|.+=++ +... ..|-...+..++|.+.+. +.+.. |-+|.-++.+.+.++++ .
T Consensus 12 ~~-eda~~~~~~Gad~iGfI-~~~~----S~R~V~~~~a~~i~~~~~------~~i~~---VgVf~~~~~~~i~~~~~~~ 76 (210)
T PRK01222 12 TP-EDAEAAAELGADAIGFV-FYPK----SPRYVSPEQAAELAAALP------PFVKV---VGVFVNASDEEIDEIVETV 76 (210)
T ss_pred cH-HHHHHHHHcCCCEEEEc-cCCC----CCCcCCHHHHHHHHHhCC------CCCCE---EEEEeCCCHHHHHHHHHhc
Confidence 44 44677778999999887 3321 123455777888887653 11222 22344456777877764 4
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
+.+.|=+-.. . .++.++.+.+.++ -+|+-++.+...
T Consensus 77 ~~d~vQLHg~--e------------~~~~~~~l~~~~~-~~iik~i~v~~~----------------------------- 112 (210)
T PRK01222 77 PLDLLQLHGD--E------------TPEFCRQLKRRYG-LPVIKALRVRSA----------------------------- 112 (210)
T ss_pred CCCEEEECCC--C------------CHHHHHHHHhhcC-CcEEEEEecCCH-----------------------------
Confidence 6666655221 1 1355677776665 346655543220
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCC---CCCCCCCCHHHH-HHHHhhCCCcEEEecCCCCHHHHHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDC---DGQGKGFDMDLI-KLISDAVSIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~---dG~~~G~d~~li-~~l~~~~~ipVIasGGi~s~eDi~~l~~ 542 (578)
. + +..+.++. ..++.++ +|... .|+..-+||+.+ +.+ ..|++.+||+ +++.+.++.+
T Consensus 113 ----------~-~-l~~~~~~~-~~~d~~L-~Ds~~~~~GGtG~~~dw~~l~~~~----~~p~~LAGGi-~peNv~~ai~ 173 (210)
T PRK01222 113 ----------G-D-LEAAAAYY-GDADGLL-LDAYVGLPGGTGKTFDWSLLPAGL----AKPWILAGGL-NPDNVAEAIR 173 (210)
T ss_pred ----------H-H-HHHHHhhh-ccCCEEE-EcCCCCCCCCCCCccchHHhhhcc----CCCEEEECCC-CHHHHHHHHH
Confidence 0 1 11122221 1356555 55322 456666799887 333 5699999999 7899999887
Q ss_pred hcCchHHhhhhhhcc--CCCCHHHHHHHHHh
Q 045794 543 KTNASAALAAGIFHR--KEVPIQSVKEHLYK 571 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~--~~~~~~~~~~~l~~ 571 (578)
..+.+|+=+.|.+-. |.-++..+++++..
T Consensus 174 ~~~p~gvDvsSgvE~~~G~KD~~ki~~f~~~ 204 (210)
T PRK01222 174 QVRPYGVDVSSGVESAPGIKDPEKIRAFIEA 204 (210)
T ss_pred hcCCCEEEecCceECCCCCcCHHHHHHHHHH
Confidence 568888888888864 66778888877764
No 442
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=96.05 E-value=0.018 Score=58.88 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCCCCCCH-HHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 482 ELAKAVEDLGAGEILLNCIDCDGQGKGFDM-DLIKLISDA-VSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 482 e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~-~li~~l~~~-~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
+-+.++.+.|++.|.+=.+..+ ++ ++++.+++. .++|++++||| +++.+.++.+ +|++++++++.+|...
T Consensus 194 eea~~A~~~gaD~I~ld~~~p~------~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~-~Gvd~I~vsai~~a~~ 265 (272)
T cd01573 194 EEALAAAEAGADILQLDKFSPE------ELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAA-AGADILVTSAPYYAKP 265 (272)
T ss_pred HHHHHHHHcCCCEEEECCCCHH------HHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHH-cCCcEEEEChhhcCcc
Confidence 4455566899998876554332 22 233334333 26899999999 8899999985 9999998888877555
Q ss_pred CCH
Q 045794 560 VPI 562 (578)
Q Consensus 560 ~~~ 562 (578)
.++
T Consensus 266 ~D~ 268 (272)
T cd01573 266 ADI 268 (272)
T ss_pred cce
Confidence 443
No 443
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=96.04 E-value=0.015 Score=61.25 Aligned_cols=80 Identities=24% Similarity=0.303 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCC-Cc-hhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLG-DL-PMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~-~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
+++ +.|+...+.|+|-|++-=-++ +||.+ .. ..+.++.++.+.+.+||.+.|||.+-++ +..++
T Consensus 144 ~s~-~~A~~a~~~G~D~iv~qG~eA--GGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~-----------iaaal 209 (330)
T PF03060_consen 144 TSV-REARKAAKAGADAIVAQGPEA--GGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRG-----------IAAAL 209 (330)
T ss_dssp SSH-HHHHHHHHTT-SEEEEE-TTS--SEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHH-----------HHHHH
T ss_pred CCH-HHHHHhhhcCCCEEEEecccc--CCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHH-----------HHHHH
Confidence 455 447788899999888775554 45555 22 4788999999999999999999999866 99999
Q ss_pred HcCcceeecchhhhcc
Q 045794 385 RSGADKISIGSDAVYA 400 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~ 400 (578)
.+||+-|.+||..+--
T Consensus 210 ~lGA~gV~~GTrFl~t 225 (330)
T PF03060_consen 210 ALGADGVQMGTRFLAT 225 (330)
T ss_dssp HCT-SEEEESHHHHTS
T ss_pred HcCCCEeecCCeEEec
Confidence 9999999999988764
No 444
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.04 E-value=0.016 Score=61.56 Aligned_cols=104 Identities=23% Similarity=0.287 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+.+++++.+.+.|++.|++---............+...++.+.+.+ ++||.+-|||++.++ +++++
T Consensus 235 ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~-----------ae~~l 303 (353)
T cd04735 235 EDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDD-----------ALEAL 303 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHH-----------HHHHH
Confidence 36688999999999999987431111000001112345556666555 789999999999876 99999
Q ss_pred HcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEec
Q 045794 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDP 434 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~ 434 (578)
+.|+|-|.+|...+.+ |++.+++.+-- ...|.-+|+.
T Consensus 304 ~~gaD~V~~gR~liad------------Pdl~~k~~~G~-~~~ir~ci~~ 340 (353)
T cd04735 304 ETGADLVAIGRGLLVD------------PDWVEKIKEGR-EDEINLEIDP 340 (353)
T ss_pred HcCCChHHHhHHHHhC------------ccHHHHHHcCC-hhhhhhcCCH
Confidence 9999999999999985 36667776422 1335555553
No 445
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.03 E-value=0.028 Score=57.44 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC----CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 482 ELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV----SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 482 e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~----~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+-+.++.+.|++.|.+-.+. .+.++++.+.. ++|+.++||| +++.+.++.+ +|++++++|+.+|.
T Consensus 192 eea~~A~~~gaD~I~ld~~~---------~e~l~~~v~~i~~~~~i~i~asGGI-t~~ni~~~a~-~Gad~Isvgal~~s 260 (269)
T cd01568 192 EEAEEALEAGADIIMLDNMS---------PEELKEAVKLLKGLPRVLLEASGGI-TLENIRAYAE-TGVDVISTGALTHS 260 (269)
T ss_pred HHHHHHHHcCCCEEEECCCC---------HHHHHHHHHHhccCCCeEEEEECCC-CHHHHHHHHH-cCCCEEEEcHHHcC
Confidence 44556667899999884433 35555554444 7899999999 7899999985 99999999988887
Q ss_pred C
Q 045794 558 K 558 (578)
Q Consensus 558 ~ 558 (578)
.
T Consensus 261 ~ 261 (269)
T cd01568 261 A 261 (269)
T ss_pred C
Confidence 6
No 446
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=96.01 E-value=0.011 Score=62.32 Aligned_cols=82 Identities=24% Similarity=0.239 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecc----cC--------CCCCCC---CchhHHHHHHHhhhc--cccEEEeCCccccccCC
Q 045794 308 KPVELARQYYKEGADEISFLNIT----GF--------RDFPLG---DLPMLQVLRLTSENV--FVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~----~~--------~~~~~~---~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~ 370 (578)
++.++|+...+.|++.|.+++-- .. .++..+ +...++.++++.+.+ .+||..-|||.+.+|
T Consensus 225 ~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~d-- 302 (335)
T TIGR01036 225 DLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQD-- 302 (335)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHH--
Confidence 68899999999999999988621 11 011101 124567788888776 589988899999977
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+.+++.+||+-|-++|+.+.+
T Consensus 303 ---------a~e~l~aGA~~Vqv~ta~~~~ 323 (335)
T TIGR01036 303 ---------ALEKIRAGASLLQIYSGFIYW 323 (335)
T ss_pred ---------HHHHHHcCCcHHHhhHHHHHh
Confidence 999999999999999999885
No 447
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.01 E-value=0.063 Score=57.11 Aligned_cols=159 Identities=16% Similarity=0.071 Sum_probs=107.0
Q ss_pred ccEEEeCCccccccCCCCccChHHHHHHHHHcCcc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEE
Q 045794 355 VPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSI 432 (578)
Q Consensus 355 ~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~sl 432 (578)
+|+...+|+.+.++ ..+.++++.+.|.. |+=+|....+. ..+.++.+.+.+|++ +.+.+
T Consensus 131 v~~y~s~~~~~~~~-------~~~~a~~~~~~Gf~~~KiKvg~~~~~~-----------d~~~v~air~~~g~~-~~l~v 191 (355)
T cd03321 131 VQAYDSHGLDGAKL-------ATERAVTAAEEGFHAVKTKIGYPTADE-----------DLAVVRSIRQAVGDG-VGLMV 191 (355)
T ss_pred eeEEEeCCCChHHH-------HHHHHHHHHHhhhHHHhhhcCCCChHh-----------HHHHHHHHHHhhCCC-CEEEE
Confidence 55554445544332 24567777777854 44455422222 137789999999974 77778
Q ss_pred eccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHH
Q 045794 433 DPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMD 512 (578)
Q Consensus 433 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~ 512 (578)
|+.. +|... ...++++.++++++..|= .-..--|++
T Consensus 192 DaN~----------------------------------~~~~~---~A~~~~~~l~~~~i~~iE-------eP~~~~d~~ 227 (355)
T cd03321 192 DYNQ----------------------------------SLTVP---EAIERGQALDQEGLTWIE-------EPTLQHDYE 227 (355)
T ss_pred eCCC----------------------------------CcCHH---HHHHHHHHHHcCCCCEEE-------CCCCCcCHH
Confidence 8632 23221 467888888888763321 112224889
Q ss_pred HHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 513 LIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 513 li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.++++++.+++||.+.-.+.++.+++++.+...++.+.+--....|-....++.+.....|+++
T Consensus 228 ~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~ 291 (355)
T cd03321 228 GHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPM 291 (355)
T ss_pred HHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCee
Confidence 9999999999999988888999999999875556666554455556666778888889889876
No 448
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=96.00 E-value=0.013 Score=56.21 Aligned_cols=50 Identities=18% Similarity=0.047 Sum_probs=39.4
Q ss_pred CCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 82 DILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 82 dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
+..++|.||+|||.... . .....+.++++++.++++.|.++|-|..+|+.
T Consensus 61 ~~~~~D~liipgg~~~~--~--~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~ 110 (185)
T cd03136 61 DAPPLDYLFVVGGLGAR--R--AVTPALLAWLRRAARRGVALGGIDTGAFLLAR 110 (185)
T ss_pred ccCCCCEEEEeCCCCcc--c--cCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHH
Confidence 45689999999974322 1 12235788999999999999999999999998
No 449
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=96.00 E-value=0.055 Score=57.50 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=99.6
Q ss_pred HHHHHHHHHcCcceee--cchhhhc-cchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeec
Q 045794 377 LEVASEYFRSGADKIS--IGSDAVY-AAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVT 453 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv--~gt~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~ 453 (578)
.+.++++.+.|.+.+= +|..... +..++ ..+.++.+.+.+|++ +.+.+|+..
T Consensus 144 ~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~-------d~~~v~~ir~~~g~~-~~l~vDaN~----------------- 198 (357)
T cd03316 144 AEEAKRAVAEGFTAVKLKVGGPDSGGEDLRE-------DLARVRAVREAVGPD-VDLMVDANG----------------- 198 (357)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCcchHHHHH-------HHHHHHHHHHhhCCC-CEEEEECCC-----------------
Confidence 4567788888987543 3432200 00011 137789999999865 677888632
Q ss_pred cCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCC
Q 045794 454 DLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533 (578)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s 533 (578)
+|.. -+..++++.++++++..+ +.-..-.|++.++++++.+++||++...+.+
T Consensus 199 -----------------~~~~---~~a~~~~~~l~~~~i~~i-------EqP~~~~~~~~~~~l~~~~~ipi~~dE~~~~ 251 (357)
T cd03316 199 -----------------RWDL---AEAIRLARALEEYDLFWF-------EEPVPPDDLEGLARLRQATSVPIAAGENLYT 251 (357)
T ss_pred -----------------CCCH---HHHHHHHHHhCccCCCeE-------cCCCCccCHHHHHHHHHhCCCCEEecccccc
Confidence 2321 135677777777765432 1112223789999999999999999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
++|+.++++...++.+.+--....|-....++.+.+++.|+++
T Consensus 252 ~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~ 294 (357)
T cd03316 252 RWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRV 294 (357)
T ss_pred HHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeE
Confidence 9999999975567777655455556666778888889889876
No 450
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=95.99 E-value=0.023 Score=60.20 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHcC-CCeEEEEecc--c-------CCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccCh
Q 045794 307 GKPVELARQYYKEG-ADEISFLNIT--G-------FRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSS 376 (578)
Q Consensus 307 ~~p~~~a~~~~~~g-~~~i~~~Dl~--~-------~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~ 376 (578)
.+.+++|+.+.+.| +|.|++--=. . ........+.+.+.++++.+.+++||.+.|+|++.++
T Consensus 228 ~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~-------- 299 (343)
T cd04734 228 DEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAE-------- 299 (343)
T ss_pred HHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHH--------
Confidence 46789999999998 8988873110 0 0000112244678888888888999999999999876
Q ss_pred HHHHHHHHHcC-cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 377 LEVASEYFRSG-ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 377 ~~~~~~~l~~G-a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
++++++.| +|-|.+|..++.+ |++.+++.+
T Consensus 300 ---~~~~l~~~~~D~V~~gR~~lad------------P~l~~k~~~ 330 (343)
T cd04734 300 ---AEQALAAGHADMVGMTRAHIAD------------PHLVAKARE 330 (343)
T ss_pred ---HHHHHHcCCCCeeeecHHhHhC------------ccHHHHHHc
Confidence 89999876 9999999999985 466677754
No 451
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.98 E-value=0.23 Score=50.02 Aligned_cols=191 Identities=18% Similarity=0.207 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEecc-----cCCCC-CCCCchhHHHHHHHhhhccccEEEeCCcc--ccccCCCCccChHHH
Q 045794 308 KPVELARQYYKEGADEISFLNIT-----GFRDF-PLGDLPMLQVLRLTSENVFVPLTVGGGIR--DFTDANGRHYSSLEV 379 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~-----~~~~~-~~~~~~~~~~i~~i~~~~~~pi~~gGGir--~~~d~~~~~~~~~~~ 379 (578)
|+ --|+.+.+.|++-+++-+.. +..|. .......+..++.|.+.+.+|+.+++-.. +.++ -.+.
T Consensus 18 D~-~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~-------~~~~ 89 (243)
T cd00377 18 DA-LSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALN-------VART 89 (243)
T ss_pred CH-HHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHH-------HHHH
Confidence 44 35777888899999987763 21221 11234567778888888899998874432 2222 3466
Q ss_pred HHHHHHcCcceeec--------chh----hhccchhhhhccccCCchHHHHHHHhCCC--Ce-EEEEEeccccccCCCCc
Q 045794 380 ASEYFRSGADKISI--------GSD----AVYAAEDYLKTGVKTGKSSLEQISRVYGN--QA-VVVSIDPRRVYITHPND 444 (578)
Q Consensus 380 ~~~~l~~Ga~~vv~--------gt~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~-iv~slD~~~~~~~~~~~ 444 (578)
++++.+.|++-|.| +.. .+-..++++ +.++.+.+.... +. |++-.|....
T Consensus 90 v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~--------~ki~aa~~a~~~~~~~~IiARTDa~~~------- 154 (243)
T cd00377 90 VRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFV--------AKIKAARDARDDLPDFVIIARTDALLA------- 154 (243)
T ss_pred HHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHH--------HHHHHHHHHHhccCCeEEEEEcCchhc-------
Confidence 88899999999998 210 111122232 344444443322 22 2232332210
Q ss_pred cccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCc
Q 045794 445 VEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIP 524 (578)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ip 524 (578)
| ..+ --+.++-++.+.+.|++.+.+.... +.+.++++.+..+.|
T Consensus 155 --------------~----------~~~----~~eai~Ra~ay~~AGAD~v~v~~~~--------~~~~~~~~~~~~~~P 198 (243)
T cd00377 155 --------------G----------EEG----LDEAIERAKAYAEAGADGIFVEGLK--------DPEEIRAFAEAPDVP 198 (243)
T ss_pred --------------c----------CCC----HHHHHHHHHHHHHcCCCEEEeCCCC--------CHHHHHHHHhcCCCC
Confidence 0 001 1146889999999999999988764 679999999999999
Q ss_pred EEEecCCCC-HHHHHHHHHhcCchHHhhhhhhccC
Q 045794 525 VIASSGAGA-VEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 525 VIasGGi~s-~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
|++.-.-.. .-.+.++.+ .|+.-++.+..++..
T Consensus 199 l~~~~~~~~~~~~~~~l~~-lG~~~v~~~~~~~~~ 232 (243)
T cd00377 199 LNVNMTPGGNLLTVAELAE-LGVRRVSYGLALLRA 232 (243)
T ss_pred EEEEecCCCCCCCHHHHHH-CCCeEEEEChHHHHH
Confidence 977532111 134556654 799988888766543
No 452
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.021 Score=59.89 Aligned_cols=80 Identities=29% Similarity=0.443 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHHHH-
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEYFR- 385 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~- 385 (578)
...++|+..++.|++.++|===.+.+.. .+ ..+.+.|+++.+.+. +||..-|+|.|.+| +++.++
T Consensus 153 ~~~~ia~~~~~~g~~~ltVHgRtr~~~y-~~-~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~-----------a~~~l~~ 219 (323)
T COG0042 153 LALEIARILEDAGADALTVHGRTRAQGY-LG-PADWDYIKELKEAVPSIPVIANGDIKSLED-----------AKEMLEY 219 (323)
T ss_pred cHHHHHHHHHhcCCCEEEEecccHHhcC-CC-ccCHHHHHHHHHhCCCCeEEeCCCcCCHHH-----------HHHHHHh
Confidence 5789999999999998885322232221 22 478999999999998 99999999999977 888887
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
.|+|.|.+|-.++.+
T Consensus 220 tg~DgVMigRga~~n 234 (323)
T COG0042 220 TGADGVMIGRGALGN 234 (323)
T ss_pred hCCCEEEEcHHHccC
Confidence 479999999999985
No 453
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=95.96 E-value=0.033 Score=55.47 Aligned_cols=79 Identities=24% Similarity=0.299 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.|| -+|+++.+.||.-++-. -+--+...+ -.|...|+-|.+...+||.+|+||.+.+| +...+++
T Consensus 146 ~D~-v~a~rLed~Gc~aVMPl--gsPIGSg~G-l~n~~~l~~i~e~~~vpVivdAGIgt~sD-----------a~~AmEl 210 (267)
T CHL00162 146 ADP-MLAKHLEDIGCATVMPL--GSPIGSGQG-LQNLLNLQIIIENAKIPVIIDAGIGTPSE-----------ASQAMEL 210 (267)
T ss_pred CCH-HHHHHHHHcCCeEEeec--cCcccCCCC-CCCHHHHHHHHHcCCCcEEEeCCcCCHHH-----------HHHHHHc
Confidence 566 68999999999877643 221111111 34667777788888899999999999987 9999999
Q ss_pred Ccceeecchhhhcc
Q 045794 387 GADKISIGSDAVYA 400 (578)
Q Consensus 387 Ga~~vv~gt~~~~~ 400 (578)
|+|-|-++|...+.
T Consensus 211 GaDgVL~nSaIakA 224 (267)
T CHL00162 211 GASGVLLNTAVAQA 224 (267)
T ss_pred CCCEEeecceeecC
Confidence 99999999988864
No 454
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=95.93 E-value=0.11 Score=53.98 Aligned_cols=176 Identities=12% Similarity=0.186 Sum_probs=108.8
Q ss_pred HHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHH--
Q 045794 344 QVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQI-- 419 (578)
Q Consensus 344 ~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~-- 419 (578)
..++..+++. .+||.+ .++ |..++|.+++.+++|.+-|.++.+.+.-.+ |.+..+++
T Consensus 73 ~~~~~~a~~a~~~VPV~l-----HLD-----Hg~~~e~i~~ai~~GftSVMiD~S~lp~ee---------NI~~T~evv~ 133 (321)
T PRK07084 73 QGAVEYAKELGCPIPIVL-----HLD-----HGDSFELCKDCIDSGFSSVMIDGSHLPYEE---------NVALTKKVVE 133 (321)
T ss_pred HHHHHHHHHcCCCCcEEE-----ECC-----CCCCHHHHHHHHHcCCCEEEeeCCCCCHHH---------HHHHHHHHHH
Confidence 3345566655 688754 222 456678899999999999999655443111 23444443
Q ss_pred -HHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe
Q 045794 420 -SRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN 498 (578)
Q Consensus 420 -~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t 498 (578)
+..+| +++-.--|.+.. . .++ +. .....-.++.+..+-+++-|++.+-+-
T Consensus 134 ~Ah~~G-----vsVEaElG~igg----------~----ed~---------~~-~~~~~~T~peeA~~Fv~~TgvD~LAva 184 (321)
T PRK07084 134 YAHQFD-----VTVEGELGVLAG----------V----EDE---------VS-AEHHTYTQPEEVEDFVKKTGVDSLAIS 184 (321)
T ss_pred HHHHcC-----CeEEEEEeeecC----------c----cCC---------cc-CcccccCCHHHHHHHHHHhCCCEEeec
Confidence 44566 344332221100 0 000 00 001113367888888888999988765
Q ss_pred ccCCCCCCCC--------CCHHHHHHHHhhC-CCcEEEecCCCCH----------------------HHHHHHHHhcCch
Q 045794 499 CIDCDGQGKG--------FDMDLIKLISDAV-SIPVIASSGAGAV----------------------EHFSDVFRKTNAS 547 (578)
Q Consensus 499 di~~dG~~~G--------~d~~li~~l~~~~-~ipVIasGGi~s~----------------------eDi~~l~~~~G~~ 547 (578)
-=+.-|.+.+ .|+++++++.+.+ ++|++.-||=+.+ |+++++.+ .|+.
T Consensus 185 iGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~-~GI~ 263 (321)
T PRK07084 185 IGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAK-SAVC 263 (321)
T ss_pred cccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHH-cCCc
Confidence 5556666654 6999999999999 7999999987443 78888885 8988
Q ss_pred HHhhhhhhccCCCCHHHHHHHHH
Q 045794 548 AALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 548 gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.|=+++-+...- ...++++|.
T Consensus 264 KINi~Tdl~~a~--~~~~~~~l~ 284 (321)
T PRK07084 264 KINIDSDGRLAM--TAAIRKVFD 284 (321)
T ss_pred eeccchHHHHHH--HHHHHHHHH
Confidence 887777553222 344555553
No 455
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=95.92 E-value=0.035 Score=54.60 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-----ccEEEeCCccccccCCCCccChHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-----VPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-----~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
++.+.++.+.+ +++.+++.=+.....+..-....++.++++++.++ .+|+++|||+. ++ +++
T Consensus 120 t~~e~~~~~~~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~n-----------v~~ 186 (220)
T PRK05581 120 TPLEPLEDVLD-LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DN-----------IKE 186 (220)
T ss_pred CCHHHHHHHHh-hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HH-----------HHH
Confidence 45677777643 47877664332211111112233455555554332 44789999999 44 999
Q ss_pred HHHcCcceeecchhhhcc
Q 045794 383 YFRSGADKISIGSDAVYA 400 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~ 400 (578)
+.+.|+|.|++||+.+++
T Consensus 187 l~~~GaD~vvvgSai~~~ 204 (220)
T PRK05581 187 CAEAGADVFVAGSAVFGA 204 (220)
T ss_pred HHHcCCCEEEEChhhhCC
Confidence 999999999999999974
No 456
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.90 E-value=0.31 Score=49.73 Aligned_cols=196 Identities=15% Similarity=0.139 Sum_probs=117.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecc-cCC-CCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNIT-GFR-DFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~-~~~-~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
..-.++|+.+.+.|+..+-.---+ ++. .+..+ ...-++.+++++++.++|+.. =+.+.+ .++.+
T Consensus 41 ~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~t--e~~d~~-----------~~~~l 107 (266)
T PRK13398 41 EQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVT--EVMDTR-----------DVEEV 107 (266)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEE--eeCChh-----------hHHHH
Confidence 355789999999999844333221 211 01010 134578889999999999864 344443 37777
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.+. ++.+-||+...++ .+++++++ +.|. -|++ +++
T Consensus 108 ~~~-vd~~kIga~~~~n------------~~LL~~~a-~~gk-PV~l----k~G-------------------------- 142 (266)
T PRK13398 108 ADY-ADMLQIGSRNMQN------------FELLKEVG-KTKK-PILL----KRG-------------------------- 142 (266)
T ss_pred HHh-CCEEEECcccccC------------HHHHHHHh-cCCC-cEEE----eCC--------------------------
Confidence 777 8999999988774 47788885 4442 1222 221
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC-----CCHHHHHHHHhhCCCcEEE-ecCCCC----
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG-----FDMDLIKLISDAVSIPVIA-SSGAGA---- 533 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G-----~d~~li~~l~~~~~ipVIa-sGGi~s---- 533 (578)
...+--+....++.+.+.|-..+++.....- +..+ .|+..+..+++.+..||++ +.-...
T Consensus 143 ---------~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~-t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~ 212 (266)
T PRK13398 143 ---------MSATLEEWLYAAEYIMSEGNENVVLCERGIR-TFETYTRNTLDLAAVAVIKELSHLPIIVDPSHATGRREL 212 (266)
T ss_pred ---------CCCCHHHHHHHHHHHHhcCCCeEEEEECCCC-CCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcccchhh
Confidence 0101113455666777888877776554110 1222 2677888888888999999 443333
Q ss_pred -HHHHHHHHHhcCchHHhhhhhh--------ccCCCCHHHHHHHHHh
Q 045794 534 -VEHFSDVFRKTNASAALAAGIF--------HRKEVPIQSVKEHLYK 571 (578)
Q Consensus 534 -~eDi~~l~~~~G~~gv~vgsa~--------~~~~~~~~~~~~~l~~ 571 (578)
+.....+. ..|++|+++=+=+ |...++++++++.+++
T Consensus 213 v~~~~~aAv-a~Ga~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~ 258 (266)
T PRK13398 213 VIPMAKAAI-AAGADGLMIEVHPEPEKALSDARQTLNFEEMKELVDE 258 (266)
T ss_pred HHHHHHHHH-HcCCCEEEEeccCCccccCCchhhcCCHHHHHHHHHH
Confidence 44445554 3799988876522 1233667777776653
No 457
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=95.89 E-value=0.031 Score=56.65 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..|.+.++...+..-..||++-..+..+.... ...-.+.++++++.+++||.+|=||++.++ ++++.
T Consensus 150 ~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~-----------~~~~~- 217 (259)
T PF00290_consen 150 TTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQ-----------AKKLA- 217 (259)
T ss_dssp TS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHH-----------HHHHH-
T ss_pred CCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHH-----------HHHHH-
Confidence 35667777777777778999988876543221 123467788888888999999999999976 99988
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
.|||.||+||+.++.
T Consensus 218 ~~aDGvIVGSa~v~~ 232 (259)
T PF00290_consen 218 AGADGVIVGSAFVKI 232 (259)
T ss_dssp TTSSEEEESHHHHHH
T ss_pred ccCCEEEECHHHHHH
Confidence 899999999998863
No 458
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=95.87 E-value=0.06 Score=53.49 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh---h--ccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE---N--VFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~---~--~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
..|++..+.|... +|.|.+.-.+--.+|..-....++-|+++++ + ....|+++|||+. +.++
T Consensus 128 ~Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~------------~ti~ 194 (228)
T PRK08091 128 ETPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTL------------ELAS 194 (228)
T ss_pred CCCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH------------HHHH
Confidence 4678888877765 8989887776322222112233444454443 2 2466999999997 4699
Q ss_pred HHHHcCcceeecchhhhcc
Q 045794 382 EYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~ 400 (578)
++.++|||.+|+||+.+.+
T Consensus 195 ~l~~aGaD~~V~GSalF~~ 213 (228)
T PRK08091 195 YLKQHQIDWVVSGSALFSQ 213 (228)
T ss_pred HHHHCCCCEEEEChhhhCC
Confidence 9999999999999998863
No 459
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=95.87 E-value=0.092 Score=60.06 Aligned_cols=92 Identities=24% Similarity=0.311 Sum_probs=61.5
Q ss_pred CCCcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCc------cCCCCCCEEEECCCCCchHHHH----HHH----hhcH
Q 045794 45 SSDSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTP------EDILNANRLIFPGVGAFAAAMD----VLN----KTGM 109 (578)
Q Consensus 45 ~~~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~------~dl~~~DGlILpGGg~~~~~~~----~l~----~~~l 109 (578)
+.+|+|+|+--. ..--..+..++.++|++..-|.-. ..|++|-||+.+||-++.+-+. |.. .++.
T Consensus 1056 s~~PkVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v 1135 (1320)
T KOG1907|consen 1056 STAPKVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESV 1135 (1320)
T ss_pred cCCCceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhH
Confidence 457899999643 445567788999999876554332 2378899999999977665432 211 1123
Q ss_pred HHHHHHHH-hCCCCEEEEechHHHHhhh
Q 045794 110 AEALCAYI-EKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 110 ~~~i~~~~-~~g~PIlGIClG~QlLa~a 136 (578)
.....++. ..+.=-||||.|+|+|++.
T Consensus 1136 ~~QF~~F~~R~DtFslGiCNGCQlms~L 1163 (1320)
T KOG1907|consen 1136 RSQFEAFFNRQDTFSLGICNGCQLMSRL 1163 (1320)
T ss_pred HHHHHHHhcCCCceeeecccHhHHHHHh
Confidence 33333333 3456689999999999984
No 460
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.83 E-value=0.013 Score=55.69 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=38.4
Q ss_pred CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 83 ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 83 l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
...+|+||+|||..... . .....+.++|+++.+.+++|.++|-|..+|+.
T Consensus 60 ~~~~D~lvipgg~~~~~-~--~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~ 109 (183)
T cd03139 60 PPDLDVLLVPGGGGTRA-L--VNDPALLDFIRRQAARAKYVTSVCTGALLLAA 109 (183)
T ss_pred CCCCCEEEECCCcchhh-h--ccCHHHHHHHHHhcccCCEEEEEchHHHHHHh
Confidence 45799999999853211 1 11224678899998999999999999999998
No 461
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=95.82 E-value=0.026 Score=58.60 Aligned_cols=77 Identities=30% Similarity=0.313 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
.+.|+...+.|++.|.+..-.+.. .....+++..+.++++.+ .+||...|||++.+| +.+++.+|
T Consensus 183 ~~~a~~a~~~G~d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d-----------~~kal~lG 249 (299)
T cd02809 183 PEDALRAVDAGADGIVVSNHGGRQ--LDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTD-----------VLKALALG 249 (299)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCCC--CCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHH-----------HHHHHHcC
Confidence 367899999999988765432211 012246788999998877 499999999999977 88888999
Q ss_pred cceeecchhhhc
Q 045794 388 ADKISIGSDAVY 399 (578)
Q Consensus 388 a~~vv~gt~~~~ 399 (578)
|+-|.+|+..+.
T Consensus 250 Ad~V~ig~~~l~ 261 (299)
T cd02809 250 ADAVLIGRPFLY 261 (299)
T ss_pred CCEEEEcHHHHH
Confidence 999999997665
No 462
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=95.74 E-value=0.73 Score=45.24 Aligned_cols=185 Identities=12% Similarity=0.112 Sum_probs=109.8
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH-cCcc
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR-SGAD 389 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~-~Ga~ 389 (578)
+-|+...++|+|.+=++ ... .+ .|-...+..++|.+.+.- .++. |-+|.-++.+.+.++.+ .|.|
T Consensus 12 eda~~~~~~GaD~iGfI-f~~--~S--pR~V~~~~a~~i~~~~~~------~~~~---VgVf~~~~~~~i~~~~~~~~~d 77 (207)
T PRK13958 12 KDVTAASQLPIDAIGFI-HYE--KS--KRHQTITQIKKLASAVPN------HIDK---VCVVVNPDLTTIEHILSNTSIN 77 (207)
T ss_pred HHHHHHHHcCCCEEEEe-cCC--CC--cccCCHHHHHHHHHhCCC------CCCE---EEEEeCCCHHHHHHHHHhCCCC
Confidence 45667778999999887 322 11 234557778888876531 2222 23455566778888875 5667
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTV 469 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (578)
.|=+-. -+ .++.++++.+.++.-+++-++.+
T Consensus 78 ~vQLHG--~e------------~~~~~~~l~~~~~~~~iika~~~----------------------------------- 108 (207)
T PRK13958 78 TIQLHG--TE------------SIDFIQEIKKKYSSIKIIKALPA----------------------------------- 108 (207)
T ss_pred EEEECC--CC------------CHHHHHHHhhcCCCceEEEEecc-----------------------------------
Confidence 665521 11 13566777655543344443321
Q ss_pred cccccCCCCCHHHHHHHHHHcCCcEEEEeccCC---CCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH-hcC
Q 045794 470 NGGREGRPIGAYELAKAVEDLGAGEILLNCIDC---DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFR-KTN 545 (578)
Q Consensus 470 ~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~---dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~-~~G 545 (578)
+....+.++.+.. .++.++ +|-.. -|+..-+||++++.+ ...|++.+||+ +++.+.++.. ..+
T Consensus 109 -------~~~~~~~~~~~~~-~~d~~L-lDs~~~~~GGtG~~~dw~~~~~~---~~~p~iLAGGL-~peNV~~a~~~~~~ 175 (207)
T PRK13958 109 -------DENIIQNINKYKG-FVDLFI-IDTPSVSYGGTGQTYDWTILKHI---KDIPYLIAGGI-NSENIQTVEQLKLS 175 (207)
T ss_pred -------cHHHHHHHHHHHh-hCCEEE-EcCCCCCCCcCCcEeChHHhhhc---cCCCEEEECCC-CHHHHHHHHhcCCC
Confidence 0012333444433 366655 44332 345555799999876 34599999999 7888888764 346
Q ss_pred chHHhhhhhhc-cCCCCHHHHHHHHHh
Q 045794 546 ASAALAAGIFH-RKEVPIQSVKEHLYK 571 (578)
Q Consensus 546 ~~gv~vgsa~~-~~~~~~~~~~~~l~~ 571 (578)
.+||=+.|.+- .|.-++..++++++.
T Consensus 176 p~gVDvsSGVE~~G~KD~~ki~~f~~~ 202 (207)
T PRK13958 176 HQGYDIASGIETNGRKDINKMTAIVNI 202 (207)
T ss_pred CCEEEcccccCCCCCCCHHHHHHHHHH
Confidence 77777777774 355567777777654
No 463
>PRK04302 triosephosphate isomerase; Provisional
Probab=95.74 E-value=0.037 Score=54.96 Aligned_cols=79 Identities=19% Similarity=0.100 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCCeEEEEec--ccCCCCCC-C-CchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 311 ELARQYYKEGADEISFLNI--TGFRDFPL-G-DLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl--~~~~~~~~-~-~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
+.++...+.+.+.|.+.-. -+...+.. . .....++++.+.+.. ++||.+||||++.++ ++++++
T Consensus 125 ~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~-----------~~~~~~ 193 (223)
T PRK04302 125 ETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGED-----------VKAALE 193 (223)
T ss_pred HHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHH-----------HHHHHc
Confidence 3444566678887776532 22210100 0 011223344444423 689999999999876 999999
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
.|+|.|++||+.++.
T Consensus 194 ~gadGvlVGsa~l~~ 208 (223)
T PRK04302 194 LGADGVLLASGVVKA 208 (223)
T ss_pred CCCCEEEEehHHhCC
Confidence 999999999999974
No 464
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=95.72 E-value=0.026 Score=53.47 Aligned_cols=69 Identities=32% Similarity=0.310 Sum_probs=49.8
Q ss_pred HHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecch
Q 045794 316 YYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGS 395 (578)
Q Consensus 316 ~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt 395 (578)
+.+.|++.+.+-..................++.+.+...+||.++|||++.++ +.++++.|||.|++|+
T Consensus 132 ~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~-----------~~~~~~~Gad~v~vgs 200 (200)
T cd04722 132 AEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPED-----------AAEALALGADGVIVGS 200 (200)
T ss_pred HHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHH-----------HHHHHHhCCCEEEecC
Confidence 66789998887666543222111111235566666677899999999999765 8999999999999986
No 465
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=95.72 E-value=0.051 Score=53.71 Aligned_cols=90 Identities=13% Similarity=0.192 Sum_probs=67.4
Q ss_pred CCcEEEEEECCC----CCHHHHHHHHHHCCCe-EEEeCCc-----------cCCCCCCEEEECCCCCchHHHHHHHhhcH
Q 045794 46 SDSVVTLLDYGA----GNVRSVRNAIRHLGFG-IKDVQTP-----------EDILNANRLIFPGVGAFAAAMDVLNKTGM 109 (578)
Q Consensus 46 ~~~~I~vld~~~----g~~~~i~~~L~~~Gv~-v~~v~~~-----------~dl~~~DGlILpGGg~~~~~~~~l~~~~l 109 (578)
..++|+++...+ .....+.+++++.|+. +.++... +.+.++|+|+++||.. ...+..++..++
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~-~~~~~~l~~t~l 106 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQ-LRITSALGGTPL 106 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcH-HHHHHHHcCChH
Confidence 456788887643 3466688889999984 5544322 1267899999999653 445566666678
Q ss_pred HHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 110 AEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 110 ~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.+.|+++++++.|+.|+-.|..+++..
T Consensus 107 ~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 107 LDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 889999999999999999999998874
No 466
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.054 Score=55.28 Aligned_cols=90 Identities=17% Similarity=0.246 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHcCCcEEEEec--cCC------------CCCCCCC-----CHHHHHHHHhhC--CCcEEEecCCCCHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNC--IDC------------DGQGKGF-----DMDLIKLISDAV--SIPVIASSGAGAVEHF 537 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~td--i~~------------dG~~~G~-----d~~li~~l~~~~--~ipVIasGGi~s~eDi 537 (578)
.+.|++.-+.+...+.+|+.+ +++ .|-++|+ .++.++++...+ .||||..|||.|=+|.
T Consensus 267 el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA 346 (398)
T KOG1436|consen 267 ELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDA 346 (398)
T ss_pred HHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhH
Confidence 467888888899999999765 333 3445665 346777776655 7999999999999999
Q ss_pred HHHHHhcCchHHhhhhhh-ccCCCCHHHHHHHH
Q 045794 538 SDVFRKTNASAALAAGIF-HRKEVPIQSVKEHL 569 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~-~~~~~~~~~~~~~l 569 (578)
.+-++ +||+-|-+.+++ +.|+-.+..+|+.|
T Consensus 347 ~Ekir-aGASlvQlyTal~yeGp~i~~kIk~El 378 (398)
T KOG1436|consen 347 YEKIR-AGASLVQLYTALVYEGPAIIEKIKREL 378 (398)
T ss_pred HHHHh-cCchHHHHHHHHhhcCchhHHHHHHHH
Confidence 98886 999999999988 56776676666544
No 467
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=95.71 E-value=0.1 Score=54.89 Aligned_cols=208 Identities=13% Similarity=0.142 Sum_probs=117.1
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
.+.+..++.++. .|+.+....-...+...-..+++.+++.. .+||.+ .++ |..+++.+++.+++|.+
T Consensus 33 avi~AAEe~~sP--vIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaL-----HLD-----Hg~~~e~i~~Ai~~GFt 100 (347)
T PRK13399 33 AIMEAAEATDSP--VILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICL-----HQD-----HGNSPATCQSAIRSGFT 100 (347)
T ss_pred HHHHHHHHhCCC--EEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEE-----ECC-----CCCCHHHHHHHHhcCCC
Confidence 445555555665 44455421111122233445667777777 488864 332 56778889999999999
Q ss_pred eeecchhhhccc---hhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 390 KISIGSDAVYAA---EDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 390 ~vv~gt~~~~~~---~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
-|.+.-+.+.+. ..|- .|.+..+++. ..+| +++-.--|.+-. . ..+..|++-
T Consensus 101 SVMiDgS~l~~~~~~~~~e-----eNI~~Trevve~Ah~~G-----vsVEaELG~igg----------~-e~~~~g~ed- 158 (347)
T PRK13399 101 SVMMDGSLLADGKTPASYD-----YNVDVTRRVTEMAHAVG-----VSVEGELGCLGS----------L-ETGEAGEED- 158 (347)
T ss_pred EEEEeCCCCCCCCCccCHH-----HHHHHHHHHHHHHHHcC-----CeEEEEeeeccC----------c-ccccccccC-
Confidence 999954433200 0010 1234444444 4465 334332221100 0 000000000
Q ss_pred eEEEEEcc--cccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC--------CCHHHHHHHHhhC-CCcEEEecCCC
Q 045794 464 WYQCTVNG--GREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG--------FDMDLIKLISDAV-SIPVIASSGAG 532 (578)
Q Consensus 464 ~~~~~~~g--~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G--------~d~~li~~l~~~~-~ipVIasGGi~ 532 (578)
.+...+ -.+..-.++.+..+-+++-|++.+-+--=+.-|.+.+ .|+++++++.+.+ ++|++.-||=+
T Consensus 159 --~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSG 236 (347)
T PRK13399 159 --GVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSS 236 (347)
T ss_pred --CccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCC
Confidence 000000 0011133678888888889999777444455566654 6899999999999 79999999987
Q ss_pred CH----------------------HHHHHHHHhcCchHHhhhhhh
Q 045794 533 AV----------------------EHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 533 s~----------------------eDi~~l~~~~G~~gv~vgsa~ 555 (578)
.+ |+++++.+ .|+..|=+++-+
T Consensus 237 vp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~-~GI~KINi~Tdl 280 (347)
T PRK13399 237 VPQELQEIINAYGGKMKETYGVPVEEIQRGIK-HGVRKVNIDTDI 280 (347)
T ss_pred CCHHHHHHHHHhcCCccccCCCCHHHHHHHHH-CCCeEEEeChHH
Confidence 65 77888885 888887666654
No 468
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=95.71 E-value=0.0094 Score=59.11 Aligned_cols=52 Identities=13% Similarity=0.288 Sum_probs=39.5
Q ss_pred CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 83 ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 83 l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
+.+||+|+||||......+ .....+.++++++.+++++|.+||-|-++|+.+
T Consensus 88 ~~~~dal~ipGG~~~~~~l--~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDL--PDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred HhHceEEEECCCccccccc--ccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 4579999999985321111 122357789999999999999999999999984
No 469
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.69 E-value=0.038 Score=58.37 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCC-----------CCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccC
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFP-----------LGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYS 375 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~-----------~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~ 375 (578)
.+-+++++.+.+.|++.|++-.= ..... .....+.+..++|++.+++||.++|+|++.++
T Consensus 236 eea~~ia~~Le~~Gvd~iev~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~------- 306 (338)
T cd04733 236 EDALEVVEALEEAGVDLVELSGG--TYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAA------- 306 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEecCC--CCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHH-------
Confidence 35678899999999998885321 10000 00122467788899889999999999999866
Q ss_pred hHHHHHHHHHcC-cceeecchhhhcc
Q 045794 376 SLEVASEYFRSG-ADKISIGSDAVYA 400 (578)
Q Consensus 376 ~~~~~~~~l~~G-a~~vv~gt~~~~~ 400 (578)
++++++.| +|-|.+|..++.|
T Consensus 307 ----a~~~l~~g~aD~V~lgR~~iad 328 (338)
T cd04733 307 ----MEQALASGAVDGIGLARPLALE 328 (338)
T ss_pred ----HHHHHHcCCCCeeeeChHhhhC
Confidence 99999987 8999999999985
No 470
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=95.69 E-value=0.057 Score=51.62 Aligned_cols=80 Identities=30% Similarity=0.270 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCC-CCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPL-GDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~-~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
++.+ ++.+.+.|+|.+.+--+.....+.. .....++.++++++...+||.+.|||.. + ++++++++
T Consensus 104 t~~~-~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~~-~-----------~i~~~~~~ 170 (196)
T cd00564 104 SLEE-ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGITP-E-----------NAAEVLAA 170 (196)
T ss_pred CHHH-HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCH-H-----------HHHHHHHc
Confidence 4544 5566778999887532211111110 0234578888888778899999999974 3 49999999
Q ss_pred Ccceeecchhhhcc
Q 045794 387 GADKISIGSDAVYA 400 (578)
Q Consensus 387 Ga~~vv~gt~~~~~ 400 (578)
|++.+++|+..+.+
T Consensus 171 Ga~~i~~g~~i~~~ 184 (196)
T cd00564 171 GADGVAVISAITGA 184 (196)
T ss_pred CCCEEEEehHhhcC
Confidence 99999999998864
No 471
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=95.66 E-value=0.031 Score=57.98 Aligned_cols=90 Identities=24% Similarity=0.345 Sum_probs=69.9
Q ss_pred ecCCHHHHHHHHHHcCCCeEEEEe-cc-cC--------------CC---CCCCCchhHHHHHHHhhhcc--ccEEEeCCc
Q 045794 305 NLGKPVELARQYYKEGADEISFLN-IT-GF--------------RD---FPLGDLPMLQVLRLTSENVF--VPLTVGGGI 363 (578)
Q Consensus 305 ~~~~p~~~a~~~~~~g~~~i~~~D-l~-~~--------------~~---~~~~~~~~~~~i~~i~~~~~--~pi~~gGGi 363 (578)
+..|-.++|+.+.+.|+|.|.+++ +- +. .+ +..-+...+++|+++.++++ +||.-=|||
T Consensus 171 ~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI 250 (310)
T COG0167 171 NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGI 250 (310)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCc
Confidence 346888999999999999999986 11 11 01 11123567889999999977 999777999
Q ss_pred cccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 364 RDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 364 r~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
.|.+| +.+.+.+||+-|=|+|+.+++-|..+
T Consensus 251 ~s~~D-----------A~E~i~aGA~~vQv~Tal~~~Gp~i~ 281 (310)
T COG0167 251 ETGED-----------ALEFILAGASAVQVGTALIYKGPGIV 281 (310)
T ss_pred CcHHH-----------HHHHHHcCCchheeeeeeeeeCchHH
Confidence 99977 88888999999999999999644443
No 472
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.65 E-value=0.032 Score=59.14 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcce
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~ 390 (578)
+-|+...+.|++.|.+-+-.+.. .......++.+.++++.+++||.+.||||+-.| +-+.+.+||+-
T Consensus 248 eda~~a~~~G~d~I~VSnhGGrq--ld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~D-----------v~KALaLGA~a 314 (361)
T cd04736 248 EDAKRCIELGADGVILSNHGGRQ--LDDAIAPIEALAEIVAATYKPVLIDSGIRRGSD-----------IVKALALGANA 314 (361)
T ss_pred HHHHHHHHCCcCEEEECCCCcCC--CcCCccHHHHHHHHHHHhCCeEEEeCCCCCHHH-----------HHHHHHcCCCE
Confidence 56788888999988876655432 112234688999999888999999999999977 88999999999
Q ss_pred eecchhhhc
Q 045794 391 ISIGSDAVY 399 (578)
Q Consensus 391 vv~gt~~~~ 399 (578)
|.+|+..+.
T Consensus 315 V~iGr~~l~ 323 (361)
T cd04736 315 VLLGRATLY 323 (361)
T ss_pred EEECHHHHH
Confidence 999987774
No 473
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=95.64 E-value=0.041 Score=53.50 Aligned_cols=78 Identities=19% Similarity=0.391 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHCCCeEEEeCCc----cC----CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechH
Q 045794 59 NVRSVRNAIRHLGFGIKDVQTP----ED----ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGL 130 (578)
Q Consensus 59 ~~~~i~~~L~~~Gv~v~~v~~~----~d----l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~ 130 (578)
+.....++|+..|+++.-++.. ++ +.+.|+|+++||. +..-+..+++.++.+.|++.+.+|+|.+|+-.|.
T Consensus 50 Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGN-TF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA 128 (224)
T COG3340 50 YVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGN-TFNLLQELKETGLDDIIRERVKAGTPYIGWSAGA 128 (224)
T ss_pred HHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCch-HHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCc
Confidence 4445677899999988765432 23 4569999998865 4556677788899999999999999999999999
Q ss_pred HHHhhhc
Q 045794 131 QLLFQSS 137 (578)
Q Consensus 131 QlLa~a~ 137 (578)
-+-+..+
T Consensus 129 ~ia~p~I 135 (224)
T COG3340 129 NIAGPTI 135 (224)
T ss_pred eeecCce
Confidence 8777654
No 474
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.64 E-value=0.055 Score=55.71 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHh-----hCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISD-----AVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~-----~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
.+-+.++.+.|++.|.+= ..+.+.++++.+ ..++|+.++||| +.+.+.++.+ +|+|++++|+++
T Consensus 206 leea~eA~~~GaD~I~LD---------n~~~e~l~~av~~~~~~~~~i~leAsGGI-t~~ni~~ya~-tGvD~Isvgsl~ 274 (288)
T PRK07428 206 LEQVQEALEYGADIIMLD---------NMPVDLMQQAVQLIRQQNPRVKIEASGNI-TLETIRAVAE-TGVDYISSSAPI 274 (288)
T ss_pred HHHHHHHHHcCCCEEEEC---------CCCHHHHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHH-cCCCEEEEchhh
Confidence 456667779999977754 233455555543 246899999999 7999999985 999999999999
Q ss_pred ccCC
Q 045794 556 HRKE 559 (578)
Q Consensus 556 ~~~~ 559 (578)
|+.+
T Consensus 275 ~sa~ 278 (288)
T PRK07428 275 TRSP 278 (288)
T ss_pred hCCC
Confidence 9543
No 475
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=95.60 E-value=0.024 Score=59.76 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCC----CchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLG----DLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~----~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..|+...+.|+|-++..=-++ +||.+ ....+.++.++.+.+. +||.+.|||-+-++ +..+|.
T Consensus 138 ~~A~~~~~~G~d~vI~~g~eA--GGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~-----------i~AAla 204 (336)
T COG2070 138 REALKAERAGADAVIAQGAEA--GGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRG-----------IAAALA 204 (336)
T ss_pred HHHHHHHhCCCCEEEecCCcC--CCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHH-----------HHHHHH
Confidence 788899999999777655544 46655 4456889999999999 99999999999876 999999
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
+||+-|-+||..+--
T Consensus 205 lGA~gVq~GT~Fl~t 219 (336)
T COG2070 205 LGADGVQMGTRFLAT 219 (336)
T ss_pred hccHHHHhhhhhhcc
Confidence 999999999988753
No 476
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=95.56 E-value=0.047 Score=58.71 Aligned_cols=92 Identities=23% Similarity=0.242 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecc--c-C---CCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNIT--G-F---RDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~--~-~---~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
.+-+++++.+.+.|+|.|++--=. . . .......+.+...++++.+.+++||.+-|||++.++ +
T Consensus 252 e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~-----------~ 320 (382)
T cd02931 252 EEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPEL-----------A 320 (382)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHH-----------H
Confidence 356789999999999988863100 0 0 000011233467788888888999999999999866 9
Q ss_pred HHHHHcC-cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 381 SEYFRSG-ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 381 ~~~l~~G-a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
+++++.| +|-|.+|..++.+ |++++++.+
T Consensus 321 ~~~l~~g~~D~V~~gR~~lad------------P~l~~k~~~ 350 (382)
T cd02931 321 SEAINEGIADMISLGRPLLAD------------PDVVNKIRR 350 (382)
T ss_pred HHHHHcCCCCeeeechHhHhC------------ccHHHHHHc
Confidence 9999876 9999999999985 466777764
No 477
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=95.53 E-value=0.096 Score=52.00 Aligned_cols=80 Identities=23% Similarity=0.335 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecc-cCCCCCCCCchhHHHHHHHhhh---c--cccEEEeCCccccccCCCCccChHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNIT-GFRDFPLGDLPMLQVLRLTSEN---V--FVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~-~~~~~~~~~~~~~~~i~~i~~~---~--~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
..|++..+.|.+. +|.|.+.-.+ |..+.. -....++-|+++++. - ...|+|+|||+. +++
T Consensus 120 ~T~~~~i~~~l~~-vD~VlvMtV~PGf~GQ~-fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~------------eti 185 (223)
T PRK08745 120 ATPVDILDWVLPE-LDLVLVMSVNPGFGGQA-FIPSALDKLRAIRKKIDALGKPIRLEIDGGVKA------------DNI 185 (223)
T ss_pred CCCHHHHHHHHhh-cCEEEEEEECCCCCCcc-ccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCH------------HHH
Confidence 5788888877664 8888887666 332222 123334445544432 2 366999999997 569
Q ss_pred HHHHHcCcceeecchhhhcc
Q 045794 381 SEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+.+.++|||.+|+||+.+..
T Consensus 186 ~~l~~aGaDi~V~GSaiF~~ 205 (223)
T PRK08745 186 GAIAAAGADTFVAGSAIFNA 205 (223)
T ss_pred HHHHHcCCCEEEEChhhhCC
Confidence 99999999999999998863
No 478
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=95.49 E-value=0.023 Score=60.45 Aligned_cols=77 Identities=25% Similarity=0.177 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+-++.+.+.|++.|++-+----..-.|+ -.+.+.++++.+ ++|||++|||++-.|+.+++. +||++|.+|+.+..
T Consensus 236 ~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kala-LGA~~v~igr~~l~ 314 (356)
T PF01070_consen 236 PEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALA-LGADAVGIGRPFLY 314 (356)
T ss_dssp HHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHH-TT-SEEEESHHHHH
T ss_pred HHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHH-cCCCeEEEccHHHH
Confidence 46778899999999998764322233344 457788887755 599999999999999999995 99999999998765
Q ss_pred C
Q 045794 558 K 558 (578)
Q Consensus 558 ~ 558 (578)
+
T Consensus 315 ~ 315 (356)
T PF01070_consen 315 A 315 (356)
T ss_dssp H
T ss_pred H
Confidence 3
No 479
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=95.48 E-value=0.041 Score=59.37 Aligned_cols=78 Identities=19% Similarity=0.180 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC-CCCC-------CCC-CHHHHHHHHhhC-------CCcEEEecCCCCHHHHHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC-DGQG-------KGF-DMDLIKLISDAV-------SIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~-dG~~-------~G~-d~~li~~l~~~~-------~ipVIasGGi~s~eDi~~l~~ 542 (578)
+..++++.++..|++.|.+-...- .|.. .|. -...+.++.+.+ ++|||++|||++..|+.+++.
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kala 305 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALA 305 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHH
Confidence 567888888888899998766532 1111 133 234445554432 699999999999999999995
Q ss_pred hcCchHHhhhhhhcc
Q 045794 543 KTNASAALAAGIFHR 557 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~ 557 (578)
+||++|.+|+++..
T Consensus 306 -LGAd~V~ig~~~l~ 319 (392)
T cd02808 306 -LGADAVGIGTAALI 319 (392)
T ss_pred -cCCCeeeechHHHH
Confidence 99999999998864
No 480
>PRK14057 epimerase; Provisional
Probab=95.47 E-value=0.084 Score=53.19 Aligned_cols=81 Identities=10% Similarity=0.152 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh---hc--cccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE---NV--FVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~---~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
+.|++..+.|... +|.|.+.-.+-=.+|..-....++-|+++++ +- ...|+++|||+. +.++
T Consensus 142 ~Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~------------~ti~ 208 (254)
T PRK14057 142 ATPLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ------------DQLP 208 (254)
T ss_pred CCCHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH------------HHHH
Confidence 5788888888775 8989888777321222222333344444433 22 366999999998 4699
Q ss_pred HHHHcCcceeecchhhhcc
Q 045794 382 EYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~ 400 (578)
++.++|||.+|.||+.+.+
T Consensus 209 ~l~~aGad~~V~GSalF~~ 227 (254)
T PRK14057 209 SLIAQGIDRVVSGSALFRD 227 (254)
T ss_pred HHHHCCCCEEEEChHhhCC
Confidence 9999999999999999863
No 481
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.46 E-value=0.47 Score=48.89 Aligned_cols=185 Identities=16% Similarity=0.150 Sum_probs=105.8
Q ss_pred HHHHHHc---------CCCeEEEEecc-----cCCC-CCCCCchhHHHHHHHhhhccccEEEe--CCccccccCCCCccC
Q 045794 313 ARQYYKE---------GADEISFLNIT-----GFRD-FPLGDLPMLQVLRLTSENVFVPLTVG--GGIRDFTDANGRHYS 375 (578)
Q Consensus 313 a~~~~~~---------g~~~i~~~Dl~-----~~~~-~~~~~~~~~~~i~~i~~~~~~pi~~g--GGir~~~d~~~~~~~ 375 (578)
|+...+. |++-++.--.. |..| +.......+..++.|...+.+||.++ +| .+...
T Consensus 22 A~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~~------- 93 (285)
T TIGR02320 22 ALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTG-GNFEH------- 93 (285)
T ss_pred HHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCC-CCHHH-------
Confidence 5556666 88887764221 1112 12234566788999999999997665 56 45443
Q ss_pred hHHHHHHHHHcCcceeec-chh--------------hhccchhhhhccccCCchHHHHHHHh-CCCCeEE-EEEeccccc
Q 045794 376 SLEVASEYFRSGADKISI-GSD--------------AVYAAEDYLKTGVKTGKSSLEQISRV-YGNQAVV-VSIDPRRVY 438 (578)
Q Consensus 376 ~~~~~~~~l~~Ga~~vv~-gt~--------------~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~iv-~slD~~~~~ 438 (578)
-.+.++++.++|+.-+.| ... .+....+++ +.|+.+.+. -+.+.++ +-.|.+-
T Consensus 94 v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~--------~kI~Aa~~a~~~~~~~IiARTDa~~-- 163 (285)
T TIGR02320 94 FRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFC--------GKIRAGKDAQTTEDFMIIARVESLI-- 163 (285)
T ss_pred HHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHH--------HHHHHHHHhccCCCeEEEEeccccc--
Confidence 235688999999998888 111 111122222 334443322 2322222 2222211
Q ss_pred cCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 045794 439 ITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLIS 518 (578)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~ 518 (578)
...|. -..++-++.+.+.|++.+.+... -.+.+.++++.
T Consensus 164 -----------------------------~~~~~-----~eAi~Ra~ay~eAGAD~ifv~~~-------~~~~~ei~~~~ 202 (285)
T TIGR02320 164 -----------------------------LGKGM-----EDALKRAEAYAEAGADGIMIHSR-------KKDPDEILEFA 202 (285)
T ss_pred -----------------------------ccCCH-----HHHHHHHHHHHHcCCCEEEecCC-------CCCHHHHHHHH
Confidence 00111 14678899999999999998721 13567777776
Q ss_pred hhC-----CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 519 DAV-----SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 519 ~~~-----~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+.+ ++|+++..+-...-.+.+|.+ .|+.-|+.+..++.
T Consensus 203 ~~~~~~~p~~pl~~~~~~~~~~~~~eL~~-lG~~~v~~~~~~~~ 245 (285)
T TIGR02320 203 RRFRNHYPRTPLVIVPTSYYTTPTDEFRD-AGISVVIYANHLLR 245 (285)
T ss_pred HHhhhhCCCCCEEEecCCCCCCCHHHHHH-cCCCEEEEhHHHHH
Confidence 666 458877543222224666664 89988887765543
No 482
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=95.46 E-value=0.2 Score=50.07 Aligned_cols=198 Identities=9% Similarity=0.073 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEeccc-CCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITG-FRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~-~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+..+..+...+.|...+| +|+-- ..- ..+ .+.|+++.+. +.++.++--+.++-. || ...++.+.++
T Consensus 13 ~~~~~l~~~~~~~~~~~~-ikvg~~~f~-~~G----~~~i~~l~~~-~~~i~~D~Kl~Di~~-----t~-~~~i~~~~~~ 79 (230)
T PRK00230 13 SKEEALAFLDQLDPAVLF-VKVGMELFT-AGG----PQFVRELKQR-GFKVFLDLKLHDIPN-----TV-AKAVRALAKL 79 (230)
T ss_pred CHHHHHHHHHhcCCcccE-EEEcHHHHH-hcC----HHHHHHHHhc-CCCEEEEeehhhccc-----cH-HHHHHHHHHc
Confidence 333555555566766555 77742 110 011 5678888775 334544444433311 11 1346778899
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHH---hCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR---VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
|++.+.+-..+-. +.++++.+ .|. ...++.+++-.- +.. .|
T Consensus 80 gad~itvH~~ag~--------------~~i~~~~~~~~~~~-~~~~~~V~~lts----~~~--------~~--------- 123 (230)
T PRK00230 80 GVDMVNVHASGGP--------------RMMKAAREALEPKS-RPLLIAVTVLTS----MDE--------ED--------- 123 (230)
T ss_pred CCCEEEEcccCCH--------------HHHHHHHHHhhccC-CCeEEEEEECCC----CCH--------HH---------
Confidence 9999988542221 33444433 342 223555654321 000 00
Q ss_pred eEEEEEcccccCC-CCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHH-------
Q 045794 464 WYQCTVNGGREGR-PIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVE------- 535 (578)
Q Consensus 464 ~~~~~~~g~~~~~-~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~e------- 535 (578)
+. ..|.... ..-....++...+.|++.+++... ....++++.. .-.+++.+||+ ++
T Consensus 124 ---l~-~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~---------~~~~ir~~~~--~~~~~v~pGI~-~~g~~~~dq 187 (230)
T PRK00230 124 ---LA-ELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQ---------EAAAIREATG--PDFLLVTPGIR-PAGSDAGDQ 187 (230)
T ss_pred ---HH-hCcCCCCHHHHHHHHHHHHHHcCCeEEEeChH---------HHHHHHhhcC--CceEEEcCCcC-CCCCCcchH
Confidence 00 0011000 112234556677888887765421 1233344321 34567888996 34
Q ss_pred ----HHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 536 ----HFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 536 ----Di~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
...++.+ .|+++++||+++++.+.+...+++..+.
T Consensus 188 ~~~~~~~~ai~-~Gad~iVvGR~I~~a~dP~~~a~~i~~~ 226 (230)
T PRK00230 188 KRVMTPAQAIA-AGSDYIVVGRPITQAADPAAAYEAILAE 226 (230)
T ss_pred HHHhCHHHHHH-cCCCEEEECCcccCCCCHHHHHHHHHHH
Confidence 5777774 8999999999999988877777766543
No 483
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.46 E-value=0.046 Score=55.21 Aligned_cols=82 Identities=20% Similarity=0.225 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..|.+..+...+..-..+|++-..+..+-... ...-.+.++++++.+++|+.+|=||++.++ ++++.+
T Consensus 157 tt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~-----------~~~v~~ 225 (265)
T COG0159 157 TTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQ-----------AAQVAE 225 (265)
T ss_pred CCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHH-----------HHHHHH
Confidence 35557777777766667999999876543322 112467788888888999999999999976 999999
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
. ||.||+||+.++.
T Consensus 226 ~-ADGVIVGSAiV~~ 239 (265)
T COG0159 226 A-ADGVIVGSAIVKI 239 (265)
T ss_pred h-CCeEEEcHHHHHH
Confidence 9 9999999998863
No 484
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=95.44 E-value=0.019 Score=57.47 Aligned_cols=52 Identities=19% Similarity=0.262 Sum_probs=38.8
Q ss_pred CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 83 ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 83 l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
..+||+||+|||.....++. ....+.+.++++.++++||-+||-|-+.|..+
T Consensus 94 ~~dYDav~iPGG~g~~~dl~--~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 94 DSEYAAVFIPGGHGALIGIP--ESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhhceEEEECCCCCChhhcc--cCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 35899999999843222222 22256788999999999999999999877763
No 485
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.41 E-value=0.048 Score=57.78 Aligned_cols=76 Identities=29% Similarity=0.340 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
+-|+...+.|++.|.+-+--+-. .......++.+.++.+.+ .+||.+.||||+-.| +-+++.+||
T Consensus 233 ~dA~~a~~~G~d~I~vsnhGGr~--ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~D-----------i~kaLalGA 299 (351)
T cd04737 233 EDADVAINAGADGIWVSNHGGRQ--LDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEH-----------VFKALASGA 299 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcc--CCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHH-----------HHHHHHcCC
Confidence 77888889999999887654321 012234578888998877 599999999999977 888889999
Q ss_pred ceeecchhhhc
Q 045794 389 DKISIGSDAVY 399 (578)
Q Consensus 389 ~~vv~gt~~~~ 399 (578)
+-|.+|+..+.
T Consensus 300 ~~V~iGr~~l~ 310 (351)
T cd04737 300 DAVAVGRPVLY 310 (351)
T ss_pred CEEEECHHHHH
Confidence 99999997775
No 486
>PRK08005 epimerase; Validated
Probab=95.39 E-value=0.095 Score=51.52 Aligned_cols=81 Identities=16% Similarity=0.079 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..|++..+.|... +|.|.+.-.+-=.+|..-....++-|+++++.. ...|+++|||+. +.+..+.+
T Consensus 116 ~Tp~~~i~~~l~~-vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~------------~~i~~l~~ 182 (210)
T PRK08005 116 ATPLLPYRYLALQ-LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITL------------RAARLLAA 182 (210)
T ss_pred CCCHHHHHHHHHh-cCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCCCH------------HHHHHHHH
Confidence 4677877777653 888888777631122222233344455544432 236999999997 46999999
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
+|||.+|+||+.+.+
T Consensus 183 aGad~~V~GsaiF~~ 197 (210)
T PRK08005 183 AGAQHLVIGRALFTT 197 (210)
T ss_pred CCCCEEEEChHhhCC
Confidence 999999999998863
No 487
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=95.38 E-value=0.34 Score=48.11 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHH
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAA 549 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv 549 (578)
+...++.+.+.|++ +|-|+.... ..|...+.++.+++.. .++|.++|||++.+|+.++++ .||+-+
T Consensus 138 i~~a~~~~~~agad-fIKTsTG~~--~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~-aGA~ri 205 (221)
T PRK00507 138 KVKACEIAKEAGAD-FVKTSTGFS--TGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIE-AGATRL 205 (221)
T ss_pred HHHHHHHHHHhCCC-EEEcCCCCC--CCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHH-cCcceE
Confidence 56788889999999 666665432 3456788888877766 489999999999999999996 888855
No 488
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=95.37 E-value=0.02 Score=60.55 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCcEEEEe-----ccC------CCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHH
Q 045794 481 YELAKAVEDLGAGEILLN-----CID------CDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAA 549 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~t-----di~------~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv 549 (578)
.++++.+++.|++.+-++ ... ......+..+++.+.+++.+++|||+.||+.+++...+++++..||.|
T Consensus 239 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV 318 (341)
T PF00724_consen 239 IEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLV 318 (341)
T ss_dssp HHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEE
T ss_pred HHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEe
Confidence 566888888887755322 111 111223345678888999899999999999999989999886779999
Q ss_pred hhhhhhccCCCCHHHHH
Q 045794 550 LAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 550 ~vgsa~~~~~~~~~~~~ 566 (578)
.+|+++...+.-...++
T Consensus 319 ~~gR~~ladPd~~~k~~ 335 (341)
T PF00724_consen 319 AMGRPLLADPDLPNKAR 335 (341)
T ss_dssp EESHHHHH-TTHHHHHH
T ss_pred eccHHHHhCchHHHHHH
Confidence 99999987775454443
No 489
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=95.35 E-value=0.31 Score=51.66 Aligned_cols=100 Identities=20% Similarity=0.214 Sum_probs=71.3
Q ss_pred CCHHHHHHHHH-HcCCCeEEEEecccCCCCCCCC-chhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYY-KEGADEISFLNITGFRDFPLGD-LPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~-~~g~~~i~~~Dl~~~~~~~~~~-~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.||.++++... .+|+|.|.+-..++-.++.... ..-.++++++.+.+++|+.++|==..-.| .+.+++.+
T Consensus 139 ~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD--------~eVLeaaL 210 (389)
T TIGR00381 139 EDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKD--------PLVLEKAA 210 (389)
T ss_pred cCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCC--------HHHHHHHH
Confidence 69999999996 5899988887776532221111 13567889998889999999865222223 46788888
Q ss_pred HcCcc-eeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 385 RSGAD-KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 385 ~~Ga~-~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
+.-.. |.+|+++..++ |.+-+.+++.+||.
T Consensus 211 e~~~G~kpLL~SAt~e~-----------Ny~~ia~lAk~yg~ 241 (389)
T TIGR00381 211 EVAEGERCLLASANLDL-----------DYEKIANAAKKYGH 241 (389)
T ss_pred HHhCCCCcEEEecCchh-----------hHHHHHHHHHHhCC
Confidence 77555 89999988873 23667888899985
No 490
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.30 E-value=0.082 Score=51.57 Aligned_cols=80 Identities=26% Similarity=0.191 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecc--cCCCCCCCCchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNIT--GFRDFPLGDLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~--~~~~~~~~~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
.++.++.+ ..+.|+|.+-+--+. ....+. .....++.++++++... +||.+.|||+ .+ ++.++
T Consensus 112 ~t~~e~~~-a~~~gaD~v~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~v~a~GGI~-~~-----------~i~~~ 177 (212)
T PRK00043 112 HTLEEAAA-ALAAGADYVGVGPIFPTPTKKDA-KAPQGLEGLREIRAAVGDIPIVAIGGIT-PE-----------NAPEV 177 (212)
T ss_pred CCHHHHHH-HhHcCCCEEEECCccCCCCCCCC-CCCCCHHHHHHHHHhcCCCCEEEECCcC-HH-----------HHHHH
Confidence 36666544 446899988652121 111110 00112678888888776 9999999995 43 49999
Q ss_pred HHcCcceeecchhhhcc
Q 045794 384 FRSGADKISIGSDAVYA 400 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~ 400 (578)
+++||+.|++|+..+++
T Consensus 178 ~~~Ga~gv~~gs~i~~~ 194 (212)
T PRK00043 178 LEAGADGVAVVSAITGA 194 (212)
T ss_pred HHcCCCEEEEeHHhhcC
Confidence 99999999999988764
No 491
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=95.28 E-value=0.11 Score=52.88 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=44.2
Q ss_pred chhHHHHHHHhhhccccEE--EeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhc
Q 045794 340 LPMLQVLRLTSENVFVPLT--VGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 340 ~~~~~~i~~i~~~~~~pi~--~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
.+++++|+++.+.+.+||. .-|||.+.++ +++++++||+.|++||+...
T Consensus 180 ~~d~elLk~l~~~~~iPVV~iAeGGI~Tpen-----------a~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 180 QAPYELVKETAKLGRLPVVNFAAGGVATPAD-----------AALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred CCCHHHHHHHHHhcCCCeEEEEeCCCCCHHH-----------HHHHHHcCCCEEEEcHHhhc
Confidence 4678999999998899997 7899999876 99999999999999999874
No 492
>PRK07695 transcriptional regulator TenI; Provisional
Probab=95.26 E-value=0.099 Score=50.90 Aligned_cols=76 Identities=22% Similarity=0.222 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCeEEE--EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 310 VELARQYYKEGADEISF--LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~--~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
.+.++...+.|++.+.+ +--+..+.+ .....++.++++.+.+.+||.+-||| +.++ +.++++.|
T Consensus 105 ~e~a~~a~~~Gadyi~~g~v~~t~~k~~--~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~-----------~~~~~~~G 170 (201)
T PRK07695 105 LEEAIQAEKNGADYVVYGHVFPTDCKKG--VPARGLEELSDIARALSIPVIAIGGI-TPEN-----------TRDVLAAG 170 (201)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCC--CCCCCHHHHHHHHHhCCCCEEEEcCC-CHHH-----------HHHHHHcC
Confidence 34577788899998853 111222111 11335788899988889999999999 6654 99999999
Q ss_pred cceeecchhhhc
Q 045794 388 ADKISIGSDAVY 399 (578)
Q Consensus 388 a~~vv~gt~~~~ 399 (578)
++.|++++....
T Consensus 171 a~gvav~s~i~~ 182 (201)
T PRK07695 171 VSGIAVMSGIFS 182 (201)
T ss_pred CCEEEEEHHHhc
Confidence 999999999886
No 493
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=95.24 E-value=0.11 Score=50.93 Aligned_cols=82 Identities=20% Similarity=0.164 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc----ccEEEeCCccccccCCCCccChHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF----VPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~----~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
-..|++..+.+.+. +|.+.+.-.+--.+|..-....++-|+++++... .-|+++|||+. ++++
T Consensus 118 P~Tp~~~i~~~l~~-vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~------------~t~~ 184 (220)
T COG0036 118 PATPLEALEPVLDD-VDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINL------------ETIK 184 (220)
T ss_pred CCCCHHHHHHHHhh-CCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCH------------HHHH
Confidence 46889999988775 8888888777322332222345555566555432 45999999998 5699
Q ss_pred HHHHcCcceeecchhhhcc
Q 045794 382 EYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~ 400 (578)
.+.++|||.+|.||+.+..
T Consensus 185 ~~~~AGad~~VaGSalF~~ 203 (220)
T COG0036 185 QLAAAGADVFVAGSALFGA 203 (220)
T ss_pred HHHHcCCCEEEEEEEEeCC
Confidence 9999999999999988875
No 494
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=95.24 E-value=0.058 Score=52.85 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=45.7
Q ss_pred HHHHHHCCCeEEEeCCc-------------------cC--CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 64 RNAIRHLGFGIKDVQTP-------------------ED--ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 64 ~~~L~~~Gv~v~~v~~~-------------------~d--l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
.+-|++.|++|.++... .| -.+||.+|||||......+..-. ...+.++++.+.+++
T Consensus 25 ~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~~--~v~~lvK~q~~~gkL 102 (247)
T KOG2764|consen 25 IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSECE--KVVDLVKEQAESGKL 102 (247)
T ss_pred HHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhhcH--HHHHHHHHHHhcCCe
Confidence 46778888888876431 01 16799999999843333333222 356788999999999
Q ss_pred EEEEechH
Q 045794 123 FLGICLGL 130 (578)
Q Consensus 123 IlGIClG~ 130 (578)
|.+||.|-
T Consensus 103 IaaICaap 110 (247)
T KOG2764|consen 103 IAAICAAP 110 (247)
T ss_pred EEEeecch
Confidence 99999886
No 495
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=95.17 E-value=0.12 Score=51.50 Aligned_cols=80 Identities=18% Similarity=0.175 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh---h--ccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE---N--VFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~---~--~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
..|++..+.|... +|.|.+.-.+-=.+|..-....++-|+++++ + ....|+++|||+. +.+.
T Consensus 118 ~T~~~~l~~~l~~-vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~------------~~i~ 184 (229)
T PRK09722 118 ETPVESIKYYIHL-LDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQ------------KTYE 184 (229)
T ss_pred CCCHHHHHHHHHh-cCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH------------HHHH
Confidence 4677888877664 8888887776311222222333444454443 2 2356999999997 4699
Q ss_pred HHHHcCcceeecchh-hhc
Q 045794 382 EYFRSGADKISIGSD-AVY 399 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~-~~~ 399 (578)
++.++|||.+|+||. .+.
T Consensus 185 ~~~~aGad~~V~Gss~iF~ 203 (229)
T PRK09722 185 KLMEAGADVFIVGTSGLFN 203 (229)
T ss_pred HHHHcCCCEEEEChHHHcC
Confidence 999999999999965 554
No 496
>PRK11249 katE hydroperoxidase II; Provisional
Probab=95.16 E-value=0.088 Score=60.69 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=62.5
Q ss_pred CCcEEEEEECC---CCCHHHHHHHHHHCCCeEEEeCCc---------------cCC-----CCCCEEEECCCCCchHHHH
Q 045794 46 SDSVVTLLDYG---AGNVRSVRNAIRHLGFGIKDVQTP---------------EDI-----LNANRLIFPGVGAFAAAMD 102 (578)
Q Consensus 46 ~~~~I~vld~~---~g~~~~i~~~L~~~Gv~v~~v~~~---------------~dl-----~~~DGlILpGGg~~~~~~~ 102 (578)
..++|+||-++ ..-+..+.+.|+..|+.+.++... ..+ ..||+|+||||......+.
T Consensus 596 ~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~ 675 (752)
T PRK11249 596 KGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLA 675 (752)
T ss_pred cccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHh
Confidence 45668887543 224456788999999988877431 011 2599999999853222221
Q ss_pred HHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 103 VLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 103 ~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.......+|+++.+.+++|.+||-|.++|+.+
T Consensus 676 --~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 676 --DNGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred --hCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 12246788999999999999999999999984
No 497
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.16 E-value=0.051 Score=60.46 Aligned_cols=78 Identities=18% Similarity=0.260 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCCeEEEEec-cc----CCC---CCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 310 VELARQYYKEGADEISFLNI-TG----FRD---FPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl-~~----~~~---~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+-|+.+.+.|||.|.+ =+ .+ .+. ....+...+..+.+++++.++||++.|||++..| +.
T Consensus 300 ~e~a~~a~~aGaD~i~v-g~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~d-----------i~ 367 (505)
T PLN02274 300 MYQAQNLIQAGVDGLRV-GMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGH-----------IV 367 (505)
T ss_pred HHHHHHHHHcCcCEEEE-CCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHH-----------HH
Confidence 35688888999997765 11 11 000 0001223566688888888999999999999977 99
Q ss_pred HHHHcCcceeecchhhhc
Q 045794 382 EYFRSGADKISIGSDAVY 399 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~ 399 (578)
+.|.+||+.|.+||....
T Consensus 368 kAla~GA~~V~vGs~~~~ 385 (505)
T PLN02274 368 KALTLGASTVMMGSFLAG 385 (505)
T ss_pred HHHHcCCCEEEEchhhcc
Confidence 999999999999998776
No 498
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=95.15 E-value=0.081 Score=54.17 Aligned_cols=72 Identities=13% Similarity=0.134 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhh
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDA-----VSIPVIASSGAGAVEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~-----~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa 554 (578)
.++-++++.+.|++.|.+...+ .+.+++..+. .++.+.++||| +++.+.+..+ +|+|.+++|+.
T Consensus 197 tleea~ea~~~GaDiI~lDn~~---------~e~l~~~v~~l~~~~~~~~leasGGI-~~~ni~~ya~-~GvD~is~gal 265 (277)
T TIGR01334 197 TIEQALTVLQASPDILQLDKFT---------PQQLHHLHERLKFFDHIPTLAAAGGI-NPENIADYIE-AGIDLFITSAP 265 (277)
T ss_pred CHHHHHHHHHcCcCEEEECCCC---------HHHHHHHHHHHhccCCCEEEEEECCC-CHHHHHHHHh-cCCCEEEeCcc
Confidence 3677788889999988877433 3333333222 35679999999 8899999985 99999998988
Q ss_pred hccCCCCH
Q 045794 555 FHRKEVPI 562 (578)
Q Consensus 555 ~~~~~~~~ 562 (578)
+|.++.++
T Consensus 266 ~~a~~~Di 273 (277)
T TIGR01334 266 YYAAPCDI 273 (277)
T ss_pred eecCccce
Confidence 77777655
No 499
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=95.14 E-value=0.058 Score=57.36 Aligned_cols=77 Identities=29% Similarity=0.348 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
.+.|+...+.|++.|.+-.-.+-+- ......++.+.++.+.+ .+||.+.||||+-.| +.+.+.+|
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HGGrq~--~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~D-----------v~KaLalG 305 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHGGRQL--DGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQH-----------VFKALASG 305 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcCccCC--CCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHH-----------HHHHHHcC
Confidence 4788889999999887766554211 12234578889998876 499999999999987 88888999
Q ss_pred cceeecchhhhc
Q 045794 388 ADKISIGSDAVY 399 (578)
Q Consensus 388 a~~vv~gt~~~~ 399 (578)
|+.|.+|-..+.
T Consensus 306 Ad~V~igR~~l~ 317 (367)
T TIGR02708 306 ADLVALGRPVIY 317 (367)
T ss_pred CCEEEEcHHHHH
Confidence 999999976554
No 500
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=95.12 E-value=0.069 Score=56.47 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+-+++++.+.+.|+|.|++.--. ... .....+.+..+++++.+++||.+-|||+ .++ ++++++.|
T Consensus 242 e~~~~~~~l~~~g~d~i~vs~g~-~~~--~~~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~-----------a~~~l~~g 306 (338)
T cd02933 242 TFSYLAKELNKRGLAYLHLVEPR-VAG--NPEDQPPDFLDFLRKAFKGPLIAAGGYD-AES-----------AEAALADG 306 (338)
T ss_pred HHHHHHHHHHHcCCcEEEEecCC-CCC--cccccchHHHHHHHHHcCCCEEEECCCC-HHH-----------HHHHHHcC
Confidence 45788999999999988873321 111 1135678889999998999999999997 654 99999886
Q ss_pred -cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 388 -ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 388 -a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
+|-|.+|..++.+ |++++++.+
T Consensus 307 ~~D~V~~gR~~lad------------P~~~~k~~~ 329 (338)
T cd02933 307 KADLVAFGRPFIAN------------PDLVERLKN 329 (338)
T ss_pred CCCEEEeCHhhhhC------------cCHHHHHhc
Confidence 9999999999985 366677653
Done!