RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 045794
(578 letters)
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 772 bits (1995), Expect = 0.0
Identities = 272/550 (49%), Positives = 358/550 (65%), Gaps = 21/550 (3%)
Query: 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED--ILNANRLIFPGVGAFAAAMDVLN 105
VV ++D +GN++S+ NAI HLG+ ++ V++P+D I +RLI PGVG + +D L
Sbjct: 5 PVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLF 64
Query: 106 KTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVP 165
G + + YIE +P +GI +GLQ LF S E+ GL I + RFD S VP
Sbjct: 65 NRGFEKPIREYIESGKPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEK-PVP 123
Query: 166 QIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDD------NKEWVSSTCNYGD-NFI 218
+IGWN+ +++ D YFVHS+ A+ + + N W + YG FI
Sbjct: 124 EIGWNSCIPSENLFFGLD-PYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFI 182
Query: 219 ASVRRGNVHAVQFHPEKSGDVGLSVLRRFL---------HPKTNIPKKPTEGKALKLAKR 269
A+V + N+ A QFHPEKSG GL+V+ FL + + L +R
Sbjct: 183 AAVNKNNIFATQFHPEKSGKAGLNVIENFLKQQSPPIPNYSAEEKELLMNDYSNYGLTRR 242
Query: 270 VIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNI 329
+IACLDVR ND+GDLVVTKGDQYDVRE + VRNLGKPV+LA++YY++GADE++FLNI
Sbjct: 243 IIACLDVRTNDQGDLVVTKGDQYDVREKSDGKGVRNLGKPVQLAQKYYQQGADEVTFLNI 302
Query: 330 TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389
T FRD PL D PML+VL+ ++ VFVPLTVGGGI+D D +G +LEVAS YFRSGAD
Sbjct: 303 TSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGAD 362
Query: 390 KISIGSDAVYAAEDYLKTGVK-TGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFK 448
K+SIG+DAVYAAE Y + G + G S +E IS+ YG QAVV+S+DP+RVY+ D + K
Sbjct: 363 KVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNK 422
Query: 449 AVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG 508
GPNGE+Y WYQCT+ GGRE R +G +EL +A E LGAGEILLNCID DG G
Sbjct: 423 VFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSG 482
Query: 509 FDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEH 568
+D++LI+ + DAV IPVIASSGAG EHF + F KT A A L AG+FHR E + VKE+
Sbjct: 483 YDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEY 542
Query: 569 LYKEGIEVRI 578
L + G++VR+
Sbjct: 543 LLEHGLKVRM 552
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.23.16.1
Length = 200
Score = 297 bits (763), Expect = 1e-98
Identities = 76/200 (38%), Positives = 107/200 (53%), Gaps = 9/200 (4%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
L+DYG+GN+RS A+ GF + Q P+ A+ L+ PG G F M ++G
Sbjct: 5 ALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQESGF 64
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
E + ++E+ PFLGIC+G+Q+L++ SEE V GLGL+PG V RF + RVPQ+GW
Sbjct: 65 VERVRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAG---RVPQMGW 121
Query: 170 NALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAV 229
NAL+ L H YF +SY + + + G F A + + N+ A
Sbjct: 122 NALEFGGAFAPLT---GRHFYFANSYYGPLTPYS---LGKGEYEGTPFTALLAKENLLAP 175
Query: 230 QFHPEKSGDVGLSVLRRFLH 249
QFHPEKSG GL+ L
Sbjct: 176 QFHPEKSGKAGLAFLALARR 195
>1gpw_B Amidotransferase HISH; lyase/transferase, complex
(lyase/transferase), histidine biosynthesis,
glutaminase, glutamine amidotransferase; 2.4A
{Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A
2wjz_B
Length = 201
Score = 281 bits (721), Expect = 2e-92
Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 15/204 (7%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQT----PEDILNANRLIFPGVGAFAAAMDVLN 105
+ ++ G GN+ ++ ++ +DV + L PGVG F M L
Sbjct: 3 IGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGEGMRRLR 62
Query: 106 KTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVP 165
+ + + + ++E +R +G+CLG+QLLF+ SEE V GL LI G V + R+P
Sbjct: 63 ENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLR---SRRLP 119
Query: 166 QIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGN 225
+GWN + + + YFVH+YRA+ +++ + +T G+ F ++VR+G
Sbjct: 120 HMGWNEVIFKDTFP------NGYYYFVHTYRAVCEEEHV--LGTTEYDGEIFPSAVRKGR 171
Query: 226 VHAVQFHPEKSGDVGLSVLRRFLH 249
+ QFHPEKS +G +L + +
Sbjct: 172 ILGFQFHPEKSSKIGRKLLEKVIE 195
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum
aerophilum} SCOP: c.1.2.1
Length = 253
Score = 272 bits (698), Expect = 3e-88
Identities = 116/313 (37%), Positives = 168/313 (53%), Gaps = 62/313 (19%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
+A R+I CLD+ D G VV KG + +R +G PVE+A +Y +EGADEI+
Sbjct: 3 MALRIIPCLDI---DGGAKVVVKGVNFQ--------GIREVGDPVEMAVRYEEEGADEIA 51
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
L+IT + G + ++ +E V +P+ VGGG+R SLE A+ FR
Sbjct: 52 ILDITAAPE---GRATFIDSVKRVAEAVSIPVLVGGGVR-----------SLEDATTLFR 97
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
+GADK+S+ + AV + + ++R +G+Q+ VV+ID +
Sbjct: 98 AGADKVSVNTAAVRNPQ------------LVALLAREFGSQSTVVAIDAKWNG------- 138
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+Y+ V GGRE + A + AK VE+LGAGEILL ID DG
Sbjct: 139 -----------------EYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGT 181
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G G+D++LI+ ++D+V IPVIAS GAG VEHF + A A LAA +FH + + I V
Sbjct: 182 GLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAA-AAGADAVLAASLFHFRVLSIAQV 240
Query: 566 KEHLYKEGIEVRI 578
K +L + G+EVRI
Sbjct: 241 KRYLKERGVEVRI 253
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.1.2.1
Length = 252
Score = 265 bits (680), Expect = 1e-85
Identities = 113/313 (36%), Positives = 163/313 (52%), Gaps = 64/313 (20%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR++ CLDV G V KG + +R+ G PVE AR Y + GADE+
Sbjct: 3 LAKRIVPCLDV---HAG--RVVKGVNFV--------NLRDAGDPVEAARAYDEAGADELV 49
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+I+ + +L V+ +E VF+PLTVGGG+R SLE A +
Sbjct: 50 FLDISATHE---ERAILLDVVARVAERVFIPLTVGGGVR-----------SLEDARKLLL 95
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
SGADK+S+ S AV E + +++ +G QAVV++ID R
Sbjct: 96 SGADKVSVNSAAVRRPE------------LIRELADHFGAQAVVLAIDARWRG------- 136
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+ + V GGR + A E A +LGAGEILL +D DG
Sbjct: 137 -----------------DFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGT 179
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
+G+D+ L +++++AV +PVIAS GAG +EHF + F + A AALAA +FH E+PI +
Sbjct: 180 KEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAF-QAGAEAALAASVFHFGEIPIPKL 238
Query: 566 KEHLYKEGIEVRI 578
K +L ++G+ VR+
Sbjct: 239 KRYLAEKGVHVRL 251
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis,
lyase, phosphate-binding sites; 1.45A {Thermotoga
maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A
1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Length = 253
Score = 264 bits (678), Expect = 3e-85
Identities = 107/313 (34%), Positives = 156/313 (49%), Gaps = 64/313 (20%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR+IACLDV+ D V KG ++ +R+ G PVEL + Y + G DE+
Sbjct: 2 LAKRIIACLDVK-----DGRVVKGSNFE--------NLRDSGDPVELGKFYSEIGIDELV 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT + ML+++ +E + +P TVGGGI E ASE
Sbjct: 49 FLDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIH-----------DFETASELIL 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
GADK+SI + AV + QI++ +G+QAVVV+ID +RV
Sbjct: 95 RGADKVSINTAAVENPS------------LITQIAQTFGSQAVVVAIDAKRV-------- 134
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+ G++ I + VE GAGEILL ID DG
Sbjct: 135 -----------DGE-----FMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT 178
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D ++I+ + ++P+IAS GAG +EHF + F A AALAA +FH +E+ ++ +
Sbjct: 179 KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-LAGADAALAASVFHFREIDVREL 237
Query: 566 KEHLYKEGIEVRI 578
KE+L K G+ VR+
Sbjct: 238 KEYLKKHGVNVRL 250
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion
protein, cobalamin, precorrin, novel fold, VIT; 2.10A
{Thermotoga maritima}
Length = 266
Score = 259 bits (663), Expect = 6e-83
Identities = 83/316 (26%), Positives = 130/316 (41%), Gaps = 67/316 (21%)
Query: 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGK-PVELARQYYKEGADEISF 326
+RV+ +D + D +V T +N G + + K GA EI
Sbjct: 2 QRVVVAIDAKRVDGEFMVFTHSG------------KKNTGILLRDWVVEVEKRGAGEILL 49
Query: 327 LNIT---GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383
+I + +++R +P+ GG +E E
Sbjct: 50 TSIDRDGTKSGY------DTEMIRFVRPLTTLPIIASGGAG-----------KMEHFLEA 92
Query: 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG-NQAVVVSIDPRRVYITHP 442
F +GADK S + D + E + + G QAVVV+ID +RV
Sbjct: 93 FLAGADKALAASVFHFREID--------MRELKEYLKKHGGSGQAVVVAIDAKRV----- 139
Query: 443 NDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDC 502
+ + G++ I + VE GAGEILL ID
Sbjct: 140 --------------DGE-----FMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDR 180
Query: 503 DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPI 562
DG G+D ++I+ + ++P+IAS GAG +EHF + F A AALAA +FH +E+ +
Sbjct: 181 DGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-LAGADAALAASVFHFREIDM 239
Query: 563 QSVKEHLYKEGIEVRI 578
+ +KE+L K G+ VR+
Sbjct: 240 RELKEYLKKHGVNVRL 255
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF,
half barrel, de novo protein; 3.10A {Thermotoga
maritima} PDB: 2lle_A
Length = 237
Score = 237 bits (608), Expect = 4e-75
Identities = 70/277 (25%), Positives = 118/277 (42%), Gaps = 54/277 (19%)
Query: 302 EVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGG 361
V + E +Y + D + ++IT + ++ + N + +
Sbjct: 7 IVDDATNGREAVEKYKELKPDIV-TMDITMPEM---NGIDAIKEIMKIDPNAKIIVCSAM 62
Query: 362 GIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421
G + + E ++GA + + AV + QI++
Sbjct: 63 GQQ-------------AMVIEAIKAGAKDFIVNTAAVENPS------------LITQIAQ 97
Query: 422 VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAY 481
+G+QAVVV+ID +RV + G++ I
Sbjct: 98 TFGSQAVVVAIDAKRV-------------------DGE-----FMVFTYSGKKNTGILLR 133
Query: 482 ELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVF 541
+ VE GAGEILL ID DG G+D ++I+ + ++P+IAS GAG +EHF + F
Sbjct: 134 DWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF 193
Query: 542 RKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578
A AALAA +FH +E+ ++ +KE+L K G+ VR+
Sbjct: 194 -LAGADAALAASVFHFREIDVRELKEYLKKHGVNVRL 229
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo
protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Length = 247
Score = 207 bits (530), Expect = 2e-63
Identities = 65/252 (25%), Positives = 100/252 (39%), Gaps = 57/252 (22%)
Query: 309 PVELARQYYKEGADEISFLNIT---GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRD 365
+ + K GA EI +I + +++R +P+ GG
Sbjct: 37 LRDWVVEVEKRGAGEILLTSIDRDGTKSGY------DTEMIRFVRPLTTLPIIASGGAG- 89
Query: 366 FTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425
+E E F GADK+SI + AV + QI++ +G+
Sbjct: 90 ----------KMEHFLEAFLRGADKVSINTAAVENPS------------LITQIAQTFGS 127
Query: 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAK 485
QAVVV+ID +RV +GE + G++ I +
Sbjct: 128 QAVVVAIDAKRV--------------------DGE----FMVFTYSGKKNTGILLRDWVV 163
Query: 486 AVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTN 545
VE GAGEILL ID DG G+D ++I+ + ++P+IAS GAG +EHF + F +
Sbjct: 164 EVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLR-G 222
Query: 546 ASAALAAGIFHR 557
A
Sbjct: 223 ADKVSINTAAVE 234
Score = 57.9 bits (141), Expect = 2e-09
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 423 YGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYE 482
+QAVVV+ID +RV +GE + G++ I +
Sbjct: 4 SSSQAVVVAIDAKRV--------------------DGE----FMVFTYSGKKNTGILLRD 39
Query: 483 LAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFR 542
VE GAGEILL ID DG G+D ++I+ + ++P+IAS GAG +EHF + F
Sbjct: 40 WVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL 99
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2,
predicted glutamine amidotransferase, PSI; HET: MSE;
1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Length = 219
Score = 175 bits (446), Expect = 1e-51
Identities = 50/223 (22%), Positives = 80/223 (35%), Gaps = 22/223 (9%)
Query: 43 ATSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMD 102
S+ + +L G VR AI G V+ E + + L+ PG G
Sbjct: 19 YFQSNMKIGVLGLQ-GAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPG-GESTTMRR 76
Query: 103 VLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGF 162
++++ G+ E L + +P G C GL LL + LGL+ V R
Sbjct: 77 LIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYD-EPHLGLMDITVER------- 128
Query: 163 RVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVR 222
G + I F+ + + + D V Y D +A R
Sbjct: 129 --NSFGRQRESFEAELSIKGVGDGFVGVFIRAPHIVEAGD---GVDVLATYNDRIVA-AR 182
Query: 223 RGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPTEGKALK 265
+G FHPE + D +++ FL N+ K+ +LK
Sbjct: 183 QGQFLGCSFHPELTDD--HRLMQYFL----NMVKEAKMASSLK 219
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich,
rossmann fold, glutaminase; 1.73A {Bacillus subtilis}
SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Length = 196
Score = 174 bits (444), Expect = 1e-51
Identities = 43/199 (21%), Positives = 72/199 (36%), Gaps = 18/199 (9%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ +L G VR +AI G V+ PE + + LI PG G +++
Sbjct: 4 IGVLGLQ-GAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPG-GESTTMRRLIDTYQF 61
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
E L + + +P G C GL +L + LGL+ VV R G +V
Sbjct: 62 MEPLREFAAQGKPMFGTCAGLIILAKEI-AGSDNPHLGLLNVVVERNSF--GRQVDSFEA 118
Query: 170 NALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAV 229
+ I F+ + + + + V + +A ++G
Sbjct: 119 DLT-------IKGLDEPFTGVFIRAPHILEAGE---NVEVLSEHNGRIVA-AKQGQFLGC 167
Query: 230 QFHPEKSGDVGLSVLRRFL 248
FHPE + D V + F+
Sbjct: 168 SFHPELTED--HRVTQLFV 184
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel,
alpha/beta three layer sandwich, lyase transferase; HET:
5RP; 2.90A {Thermotoga maritima}
Length = 208
Score = 158 bits (402), Expect = 2e-45
Identities = 50/206 (24%), Positives = 79/206 (38%), Gaps = 31/206 (15%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ +L G+VR A+ LG V+ PE + + LI PG G + +L + M
Sbjct: 23 IGVLGV-QGDVREHVEALHKLGVETLIVKLPEQLDMVDGLILPG-GESTTMIRILKEMDM 80
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSS-------NGF 162
E L I P C G+ LL + + LG++ V R
Sbjct: 81 DEKLVERINNGLPVFATCAGVILLAKRIKNYS-QEKLGVLDITVERNAYGRQVESFETFV 139
Query: 163 RVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVR 222
+P +G + F+ + R + + N E + +T +Y V+
Sbjct: 140 EIPAVGKDPF---------------RAIFIRAPRIVETGKNVE-ILATYDY---DPVLVK 180
Query: 223 RGNVHAVQFHPEKSGDVGLSVLRRFL 248
GN+ A FHPE + D L + R FL
Sbjct: 181 EGNILACTFHPELTDD--LRLHRYFL 204
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved
protein, structural genomics; 1.90A {Methanocaldococcus
jannaschii}
Length = 186
Score = 157 bits (398), Expect = 4e-45
Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 21/199 (10%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ +L G+V AI+ G+ K V+ ED+ + LI PG G A ++ K G+
Sbjct: 3 IGVLAI-QGDVEEHEEAIKKAGYEAKKVKRVEDLEGIDALIIPG-GESTAIGKLMKKYGL 60
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
E + + P LG C G+ LL + + N L L+ V R G
Sbjct: 61 LEKI---KNSNLPILGTCAGMVLLSKGTGINQI--LLELMDITVKR---------NAYGR 106
Query: 170 NALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAV 229
K+ E D + V+ D+ E + I V++G A+
Sbjct: 107 QVDSFEKEIEFKDLGKVYGVFIRAPVVDKILSDDVE----VIARDGDKIVGVKQGKYMAL 162
Query: 230 QFHPEKSGDVGLSVLRRFL 248
FHPE S D G V + F+
Sbjct: 163 SFHPELSED-GYKVYKYFV 180
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis,
structural genomics, NPPSFA; 1.90A {Thermus
thermophilus}
Length = 191
Score = 147 bits (372), Expect = 2e-41
Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 18/192 (9%)
Query: 58 GNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYI 117
G+ R + A++ LG K+V+ E + LI PG G + + G+ + + +
Sbjct: 12 GDFREHKEALKRLGIEAKEVRKKEHLEGLKALIVPG-GESTTIGKLAREYGIEDEVRKRV 70
Query: 118 EK-DRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK 176
E+ G C G L + LG++ V R + G +V +
Sbjct: 71 EEGSLALFGTCAGAIWLAKEIVGYPEQPRLGVLEAWVERN--AFGRQVESFEEDLE---- 124
Query: 177 DSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKS 236
++ +G H F+ + + E ++ + VR+G V A FHPE +
Sbjct: 125 ----VEGLGSFHGVFIRAPVFRRLGEGVEVLA----RLGDLPVLVRQGKVLASSFHPELT 176
Query: 237 GDVGLSVLRRFL 248
D + R FL
Sbjct: 177 EDPR--LHRYFL 186
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria,
transferase; HET: PG4; 1.62A {Plasmodium falciparum}
SCOP: c.23.16.1 PDB: 4ads_G
Length = 227
Score = 109 bits (273), Expect = 2e-27
Identities = 37/205 (18%), Positives = 64/205 (31%), Gaps = 21/205 (10%)
Query: 58 GNVRSVRNAIRHLG---FGIKDVQTPEDILNANRLIFPGVGAFAAAMD-VLNKTGMAEAL 113
G+ N L I V+ D+ + L+ PG + + AL
Sbjct: 13 GDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAYENDTLYNAL 72
Query: 114 CA-YIEKDRPFLGICLGLQLLFQSSEENGPVNG------LGLIPGVVGRFDSSNGFRVPQ 166
+P G C G LL ++ E + G + + R +
Sbjct: 73 VHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGS---QND 129
Query: 167 IGWNALQITKDSEILDDVGD-HHVYFVHSYRAMPSDDNKEWVSSTCN--YGDNFIASVRR 223
+L I DS + + + D + +++ + YG N IA+V +
Sbjct: 130 SFICSLNIISDSSAFKKDLTAACIRAPYIREILS--DEVKVLATFSHESYGPNIIAAVEQ 187
Query: 224 GNVHAVQFHPEKSGDVGLSVLRRFL 248
N FHPE + + F
Sbjct: 188 NNCLGTVFHPELLPH--TAFQQYFY 210
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino]
imidazole-4-carboxamide...; TIM alpha/beta barrel; HET:
CIT; 1.30A {Saccharomyces cerevisiae}
Length = 260
Score = 100 bits (251), Expect = 6e-24
Identities = 46/315 (14%), Positives = 88/315 (27%), Gaps = 66/315 (20%)
Query: 269 RVIACLDVRANDKGDLVV--TKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISF 326
+ I C+D+ V G +E + + A+ Y
Sbjct: 2 KFIGCIDL----HNGEVKQIVGGTLTSKKEDVPKTNFVSQHPSSYYAKLYKDRDVQGCHV 57
Query: 327 LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386
+ + D R + L VGGGI D E+
Sbjct: 58 IKLGPNND---------DAAREALQESPQFLQVGGGINDTNCL------------EWL-K 95
Query: 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVE 446
A K+ + S LE+++ + G +VV + R+
Sbjct: 96 WASKVIVTSWLF-------TKEGHFQLKRLERLTELCGKDRIVVDLSCRK---------- 138
Query: 447 FKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506
+G + +N + + E L++ D +G
Sbjct: 139 ---------TQDGR----WIVAMNKWQTLTDLELNADTFRELRKYTNEFLIHAADVEGLC 185
Query: 507 KGFDMDLIKLISDAVS----IPVIASSGAGAVEHFSDVFR----KTNASAALAAGIFHRK 558
G D L+ + + + ++ + GA +V+ V K + + + IF
Sbjct: 186 GGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGN 245
Query: 559 EVPIQSVKEHLYKEG 573
V + K+G
Sbjct: 246 LVKFEDCCRWNEKQG 260
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis,
TIM-barrel, His biosynthesis, tryptophan biosynthesis;
HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A
2y85_A*
Length = 244
Score = 69.5 bits (171), Expect = 2e-13
Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 53/230 (23%)
Query: 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDF 366
G V+ A + ++GA+ I +++ G ++L + V + + GGIRD
Sbjct: 31 GSAVDAALGWQRDGAEWIHLVDLDA----AFGRGSNHELLAEVVGKLDVQVELSGGIRD- 85
Query: 367 TDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426
E + +G ++++G+ A+ E+ ++ +G+Q
Sbjct: 86 ----------DESLAAALATGCARVNVGTAAL---EN---------PQWCARVIGEHGDQ 123
Query: 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKA 486
V V +D V++ D W +GG +++ +
Sbjct: 124 -VAVGLD----------------VQIIDGEHRLRGRGW---ETDGGD------LWDVLER 157
Query: 487 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEH 536
++ G ++ I DG G ++DL+ ++D PVIAS G +++
Sbjct: 158 LDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDD 207
Score = 34.9 bits (81), Expect = 0.055
Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 28/134 (20%)
Query: 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFL 327
+V LDV+ D + +G + + G ++ + EG
Sbjct: 122 DQVAVGLDVQIIDGEHRLRGRG--------WETDG----GDLWDVLERLDSEGCSRFVVT 169
Query: 328 NITGFRDFPLGDL--PMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
+IT +D G L P L +L ++ P+ GG+ D L +
Sbjct: 170 DIT--KD---GTLGGPNLDLLAGVADRTDAPVIASGGVSSLDD--------LRAIATLTH 216
Query: 386 SGADKISIGSDAVY 399
G + +G A+Y
Sbjct: 217 RGVEGAIVGK-ALY 229
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan
biosynthesis; 1.8A {Streptomyces coelicolor} SCOP:
c.1.2.1 PDB: 2vep_A 2x30_A
Length = 244
Score = 67.2 bits (165), Expect = 1e-12
Identities = 40/230 (17%), Positives = 88/230 (38%), Gaps = 57/230 (24%)
Query: 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDF 366
G P+E A + + GA+ + +++ G ++ ++ + + + + GGIRD
Sbjct: 32 GSPLEAALAWQRSGAEWLHLVDLDA----AFGTGDNRALIAEVAQAMDIKVELSGGIRD- 86
Query: 367 TDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426
+ + +G ++++G+ A+ E + ++ +G++
Sbjct: 87 ----------DDTLAAALATGCTRVNLGTAAL---ET---------PEWVAKVIAEHGDK 124
Query: 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKA 486
+ V +D R + R W T +GG YE
Sbjct: 125 -IAVGLDVRGTTL---------RGR-----------GW---TRDGGD------LYETLDR 154
Query: 487 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEH 536
+ G ++ I DG +G +++L+K + A PV+AS G +++
Sbjct: 155 LNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDD 204
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol-
4-carboxamid ribonucleotid...; isomerase, histidine
biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1
PDB: 2cff_A 2w79_A
Length = 241
Score = 66.1 bits (162), Expect = 2e-12
Identities = 47/246 (19%), Positives = 80/246 (32%), Gaps = 57/246 (23%)
Query: 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTD 368
PVEL + +EG I ++++ + L VL SE + +GGGIR
Sbjct: 32 PVELVEKLIEEGFTLIHVVDLSNAIE---NSGENLPVLEKLSE-FAEHIQIGGGIRSLDY 87
Query: 369 ANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAV 428
A + + G + + S + ED S L+ + +
Sbjct: 88 AE-----------KLRKLGYRRQIVSSKVL---ED---------PSFLKSLRE-IDVE-P 122
Query: 429 VVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVE 488
V S+D R + G I L K ++
Sbjct: 123 VFSLDTRGGRVA----------------------------FKGWLAEEEIDPVSLLKRLK 154
Query: 489 DLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASA 548
+ G EI+ I+ DG + D L K I+ + V+A+ G + + +
Sbjct: 155 EYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETN 214
Query: 549 ALAAGI 554
L G+
Sbjct: 215 GLLKGV 220
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold,
structural genomics, joint center for structural
genomics, JCSG; 1.70A {Thermotoga maritima} SCOP:
c.23.16.1
Length = 239
Score = 55.2 bits (133), Expect = 9e-09
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 24/126 (19%)
Query: 111 EALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWN 170
+ + ++K+ PFLGICLG Q+L + LG V R + +IGW
Sbjct: 84 QLIEEILKKEIPFLGICLGSQMLAKV---------LG---ASVYRGKNG-----EEIGWY 126
Query: 171 ALQITKDSEILDDVGDH-HVYFVHSYR-AMPSDDNKEWVSSTCNYGDNFIASVRRGNVHA 228
++ D++ + D V+ H +P V ++ Y G
Sbjct: 127 FVEKVSDNKFFREFPDRLRVFQWHGDTFDLP--RRATRVFTSEKYE---NQGFVYGKAVG 181
Query: 229 VQFHPE 234
+QFH E
Sbjct: 182 LQFHIE 187
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 7e-08
Identities = 50/357 (14%), Positives = 112/357 (31%), Gaps = 90/357 (25%)
Query: 20 RTNEFYKIQNRVKFKSPRALSIRATSSDSVVTLLDYGAGNVRSVRNAIRH--LGFGIKDV 77
T + + ++R+ + + + S L +R +N + LG G K
Sbjct: 108 MTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-KTW 165
Query: 78 QTPEDILNANRLI--FPG------VGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLG 129
+ + + ++ + + VL M + L I+ +
Sbjct: 166 VALD-VCLSYKVQCKMDFKIFWLNLKNCNSPETVLE---MLQKLLYQIDPN--------W 213
Query: 130 LQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHV 189
SS N + + I + R S + N L + L +V +
Sbjct: 214 TSRSDHSS--NIKLR-IHSIQAELRRLLKSKPYE------NCLLV------LLNVQNAKA 258
Query: 190 --YFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRF 247
F S + + + K ++ + + H++ P++ S+L ++
Sbjct: 259 WNAFNLSCKILLTTRFK----QVTDFLSAATTTHISLDHHSMTLTPDEV----KSLLLKY 310
Query: 248 LH-PKTNIPKKPTEGKALKLAKRVIACLDVRANDKGDLVVT----KGDQYDVREHTKENE 302
L ++P++ +L+ +IA + + D + T K D E+
Sbjct: 311 LDCRPQDLPREVLTTNPRRLS--IIA-----ESIR-DGLATWDNWKHVNCDKLTTIIESS 362
Query: 303 VRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTV 359
+ L +P E R+ + L++ FP + +P +
Sbjct: 363 LNVL-EPAEY-RKMFDR-------LSV-----FP--------------PSAHIPTIL 391
Score = 32.5 bits (73), Expect = 0.42
Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 31/128 (24%)
Query: 18 FTRTNEFYKIQNRVKFKSPRALSIRATSSDSVVTLLDYGAGNVRSVRNAIRHLGFGI--K 75
T + +K N K + S+ + D +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR----------------LSVFPP 383
Query: 76 DVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAY--IEKDRPFLGICL-GLQL 132
P +L+ + + M V+NK L Y +EK I + + L
Sbjct: 384 SAHIPTILLS----LIWFDVIKSDVMVVVNK------LHKYSLVEKQPKESTISIPSIYL 433
Query: 133 LFQSSEEN 140
+ EN
Sbjct: 434 ELKVKLEN 441
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 1e-07
Identities = 110/640 (17%), Positives = 179/640 (27%), Gaps = 255/640 (39%)
Query: 1 MD--NTRSLSSISSTS---SLLFTRTNEFYKIQNRVKFKSPRALSIRATSSD----SVVT 51
MD +TR L+ +S S LL + F Q + +F ++D +
Sbjct: 1 MDAYSTRPLT-LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 52 LLDYGAGNVRSVRNAIRHLGFGIKDVQ-----TPEDILNA-----NRLIFPG--VGAFAA 99
L+ + LG+ V+ + +LN G + A AA
Sbjct: 60 LV-------------GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 100 AMDVLNKTGMAEA---LCAYIE----KDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGV 152
+ N T + + + YI RPF LF++ E L I
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKK--SNSALFRAVGEGN--AQLVAI--- 159
Query: 153 VGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYF------VHSYRAMPSDDNKEW 206
F G Q G+ YF +Y +
Sbjct: 160 ---F---GG-----------Q-----------GNTDDYFEELRDLYQTYHVL-------- 183
Query: 207 VSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKK--------- 257
V + ++ + R + A + + GL++L +L +N P K
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQ-----GLNILE-WLENPSNTPDKDYLLSIPIS 237
Query: 258 -PTEGKALKLAKRVIAC-------LDVRANDKGDLVVTKGDQYDV-------REHTKENE 302
P G ++LA V+ ++R+ KG ++G + + E+
Sbjct: 238 CPLIG-VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG----LVTAVAIAETDSWES- 291
Query: 303 VRNLGKPVELARQYYKEGADEISFLNITGFR---DFPLGDL-----------------PM 342
++ I+ L G R +P L PM
Sbjct: 292 -------------FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 343 LQVLRLT-----------------SENVFVPLTVGGGIRDFTDANGR-------HYSSLE 378
L + LT + V + L NG SL
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV-----------NGAKNLVVSGPPQSLY 387
Query: 379 VASEYFR-----SGAD---------KISIGS---------------DAV-YAAEDYLKTG 408
+ R SG D K+ + A +D +K
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 409 VKTGKSSLEQISRVY----GN--QAVVVSIDPR--RVYITHPND----VEFKAVRVTDLG 456
V + QI VY G+ + + SI R I P +FKA + D G
Sbjct: 448 VSFNAKDI-QIP-VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Query: 457 PNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEIL 496
P GG G +G + + G I+
Sbjct: 506 P-------------GGASG--LGVL-THRNKDGTGVRVIV 529
Score = 47.0 bits (111), Expect = 2e-05
Identities = 65/356 (18%), Positives = 103/356 (28%), Gaps = 137/356 (38%)
Query: 261 GKAL----KLAKRV-------------IACLDVRANDKGDLVVTKGDQYD--VREHTKEN 301
G L K A+ V + LD+ N+ +L + G + +RE+
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 302 EVRNLGKPVELARQYYKEGADE----ISF------LNITGFRDFPLGDLPMLQV-LRLTS 350
+ + +KE +E +F L+ T F Q L L
Sbjct: 1692 IFETIVDGKLKTEKIFKE-INEHSTSYTFRSEKGLLSATQF----------TQPALTLME 1740
Query: 351 ENVFVPLTVGGGI-RDFTDANGRH----YSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405
+ F L G I D T A G H Y++L + AD +SI V
Sbjct: 1741 KAAFEDLKSKGLIPADATFA-G-HSLGEYAAL-ASL------ADVMSI-ESLVEV----- 1785
Query: 406 KTGVKT-GKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNG-EEYA 463
V G AV PR G Y
Sbjct: 1786 ---VFYRGM---------TMQVAV-----PR--------------------DELGRSNYG 1808
Query: 464 WYQCTVNGGREGRPIGAYELAKAVEDLGA--GEIL----LNCIDCDGQGKGFDMDLIKLI 517
+N GR L VE +G G ++ N + Q
Sbjct: 1809 --MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV---ENQ------------ 1851
Query: 518 SDAVSIPVIASSG-AGAVEHFSDV--FRKTNASAALAAGIFHRKEVPIQSVKEHLY 570
++G A++ ++V F K + +K + ++ V+ HL+
Sbjct: 1852 -------QYVAAGDLRALDTVTNVLNFIKLQKIDIIEL----QKSLSLEEVEGHLF 1896
Score = 47.0 bits (111), Expect = 2e-05
Identities = 60/328 (18%), Positives = 104/328 (31%), Gaps = 109/328 (33%)
Query: 25 YKIQNRVKFKSPRAL--SIRATS--SDSVVTLLDYGAGN-----VRSVRNAIRHLGF--G 73
Y + ++ +P L ++ + S +VT + + SVR AI L F G
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL-FFIG 307
Query: 74 IKDVQT-PEDILNANRL---IFPGVGAFAAAMDVLNKTGMA-EALCAYIEKDRPFLG--- 125
++ + P L + L + G + M L+ + + E + Y+ K L
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGV-PSPM--LSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 126 -ICLGLQLLFQSSEENGPVN-----------GLGL---------------IPGVVGRFDS 158
+ + L NG N GL L IP F
Sbjct: 365 QVEISLV--------NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP-----FSE 411
Query: 159 SNGFRVPQIGWNALQIT--------KDSE--ILDDVGDHHVYFVHSYRAMP---SDDNKE 205
R + L + + I D+ ++V F +P + D +
Sbjct: 412 ----RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 206 WVSSTCNYGDNFIASVRRGNV-----------HAVQFHPEKSGDVGLSVLRRFLHPKTNI 254
+ + + + + R V H + F P G GL VL T+
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP--GGASGLGVL-------TH- 517
Query: 255 PKKPTEGKALKLAKRVI--ACLDVRAND 280
+ +G + RVI LD+ +D
Sbjct: 518 --RNKDGTGV----RVIVAGTLDINPDD 539
Score = 45.8 bits (108), Expect = 4e-05
Identities = 65/432 (15%), Positives = 127/432 (29%), Gaps = 153/432 (35%)
Query: 215 DNFIASVRRGN-VHAV--QFHPEKSGDVG--LSVLRRFLHPK--TNIPKKPTEGKALKLA 267
F GN +HA+ + E + +++ ++ + P AL
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL--- 145
Query: 268 KRVIACLDVRANDKGD--LVVTKGDQ-------------YD-----VRE--HTKENEVRN 305
RA +G+ LV G Q Y V + +
Sbjct: 146 --------FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 306 LGKPVELARQYYKEGADEISFLNITGFRDFPLGD--------LPMLQVLRL--------- 348
L + A + + +G + + +L + P D P++ V++L
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPS--NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 349 ---TSENVFVPL----TVGGGI------------RDFTDANGRHYSSLEV-------ASE 382
T + L G+ F + ++ V E
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV---RKAITVLFFIGVRCYE 312
Query: 383 YFRSGADKISIGSDAVYAAE--------------DYLKTGVKTGKSSLEQISRVY----- 423
+ + + SI D++ E + ++ V S L +V
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 424 GNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTV-NGGREGR------ 476
G + +VVS P+ +Y ++ + + P+G + Q + R+ +
Sbjct: 373 GAKNLVVSGPPQSLYGL---NLTLRKAKA----PSGLD----QSRIPFSERKLKFSNRFL 421
Query: 477 PIGA-----YELAKAVE----DLGAGEILLNCIDC--------DGQGKGFDM-----DLI 514
P+ + L A + DL + N D DG D+ +
Sbjct: 422 PVASPFHSHL-LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS----DLRVLSGSIS 476
Query: 515 KLISDAV-SIPV 525
+ I D + +PV
Sbjct: 477 ERIVDCIIRLPV 488
Score = 42.7 bits (100), Expect = 4e-04
Identities = 46/316 (14%), Positives = 85/316 (26%), Gaps = 119/316 (37%)
Query: 327 LNITGFRDFPL--GDLPMLQVLRLTSENVFVPLTVGGGIRD-FTDANGRHYSSLEVASEY 383
++ R L G L + + L F + +++ F L +E
Sbjct: 1 MDAYSTRPLTLSHGSL---EHVLLVPTASFFIASQ---LQEQFN-------KILPEPTEG 47
Query: 384 FRSGADKISIGSDAVYAAE--DYLKTGVKTG---------KSSLEQISRVY--GN--QAV 428
F + D+ + + A + Y+ + V+ L + Y GN A+
Sbjct: 48 F-AADDEPT--TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 429 VVSIDPR------------RVYITHPNDVEFKAVRVTDLG-PNGEEYAWYQ--------- 466
+ + Y A + A ++
Sbjct: 105 AAKLLQENDTTLVKTKELIKNY--------ITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 467 CTVNGGREGRPIGAY--ELAK-------AVEDL--GAGEILLNCIDCDGQ-----GKGFD 510
+ GG +G Y EL V DL + E L I +G +
Sbjct: 157 VAIFGG-QG-NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 511 -MDLIK----------LISDAVSIPVI----------------------ASSGAGAVEHF 537
++ ++ L+S +S P+I S GA H
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 538 SDVFRKTNASAALAAG 553
+ + A+A
Sbjct: 275 QGLV----TAVAIAET 286
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel,
chorismate, type 1 glutamine amidotransfera phenazine
biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP}
PDB: 3r74_A* 3r76_A*
Length = 645
Score = 50.2 bits (120), Expect = 2e-06
Identities = 37/226 (16%), Positives = 70/226 (30%), Gaps = 41/226 (18%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDI-LNANRLIFPGVG-----AFAAAMDV 103
++D + + LG + + + L ++ G G
Sbjct: 449 ALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAVDLARYDVVVMGPGPGDPSDAGDPRIA 508
Query: 104 LNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFR 163
+ + ++ +PF+ +CL Q+L LG + R +
Sbjct: 509 RLYAWLRHLI----DEGKPFMAVCLSHQIL---------NAILG---IPLVRRE------ 546
Query: 164 VPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKE-----WVSSTCNYGDNFI 218
VP G EI V F ++Y A D + V+ + + +
Sbjct: 547 VPNQG-------IQVEIDLFGQRERVGFYNTYVAQTVRDEMDVDGVGTVAISRDPRTGEV 599
Query: 219 ASVRRGNVHAVQFHPEKSGDV-GLSVLRRFLHPKTNIPKKPTEGKA 263
++R ++QFH E V G +L + K+ T A
Sbjct: 600 HALRGPTFSSMQFHAESVLTVDGPRILGEAITHAIRREKRMTALTA 645
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase,
gatases, riken structural genomics/proteomics
initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP:
c.23.16.1 PDB: 2d7j_A
Length = 189
Score = 45.4 bits (108), Expect = 1e-05
Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 21/130 (16%)
Query: 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEIL 181
P LGICLG QL+ G G VGR + + + ++I + EI
Sbjct: 74 PILGICLGHQLI---------AKFFG---GKVGRGEKA------EYSLVEIEIIDEXEIF 115
Query: 182 DDVGDHH-VYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPE-KSGDV 239
+ V+ H + ++ + + ++ VQFHPE +
Sbjct: 116 KGLPKRLKVWESHMDEVKELPPKFKILARSETCPIEAMKHEEL-PIYGVQFHPEVAHTEK 174
Query: 240 GLSVLRRFLH 249
G +LR F
Sbjct: 175 GEEILRNFAK 184
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2;
HET: MSE; 1.30A {Methylobacillus flagellatus} PDB:
3l83_A*
Length = 250
Score = 45.2 bits (107), Expect = 3e-05
Identities = 25/135 (18%), Positives = 40/135 (29%), Gaps = 40/135 (29%)
Query: 111 EALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWN 170
+ + + P +G CLG QLL ++ +G G V +IGW
Sbjct: 73 ALIRDAVAQRVPVIGHCLGGQLLAKA---------MG---GEVTDSPH------AEIGWV 114
Query: 171 ALQIT---KDSEILDDVGDHHVYFVHSYR-AMPSDDNKEWV--SSTCN-----YGDNFIA 219
+ E L + ++ H ++P + S C D I
Sbjct: 115 RAWPQHVPQALEWLGTWDELELFEWHYQTFSIP--PGAVHILRSEHCANQAYVLDDLHI- 171
Query: 220 SVRRGNVHAVQFHPE 234
Q H E
Sbjct: 172 --------GFQCHIE 178
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP
synthetase, GMP biosynthesis, glutamine
amidotransferase, ligase, cytoplasm; 2.40A {Homo
sapiens}
Length = 218
Score = 42.5 bits (101), Expect = 1e-04
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 38/138 (27%)
Query: 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEIL 181
P LGIC G+Q++ + G G V + + G + + +
Sbjct: 98 PVLGICYGMQMMNKV---------FG---GTVHKKSVR------EDGVFNISVDNTCSLF 139
Query: 182 DDVGDHH-VYFVHSYR--AMPSDDNKEWVSSTCNYGDNFIASV--RRGNVHAVQFHPEKS 236
+ V H + D + V+ + N +A + ++ QFHPE
Sbjct: 140 RGLQKEEVVLLTHGDSVDKVA--DGFKVVARS----GNIVAGIANESKKLYGAQFHPE-- 191
Query: 237 GDV-----GLSVLRRFLH 249
V G +L+ FL+
Sbjct: 192 --VGLTENGKVILKNFLY 207
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase,
transferas; 2.70A {Streptococcus mutans}
Length = 236
Score = 42.1 bits (99), Expect = 2e-04
Identities = 26/175 (14%), Positives = 54/175 (30%), Gaps = 37/175 (21%)
Query: 113 LCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNAL 172
+ + ++ +G+CLG QL+ + +IG +
Sbjct: 77 IQKAAKSEKIIVGVCLGAQLMGVAYG------------ADYLHSPK------KEIGNYLI 118
Query: 173 QIT---KDSEILDDVGDH-HVYFVHSYR-AMPSDDNKEWV--SSTCNYGDNFIASVRRG- 224
+T K L D D V H +P D + + S C ++ G
Sbjct: 119 SLTEAGKMDSYLSDFSDDLLVGHWHGDMPGLP--DKAQVLAISQGCPR-----QIIKFGP 171
Query: 225 NVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPTEGKALKLAKRVIACLDVRAN 279
+A Q H E ++ + + ++ + ++ A+ + N
Sbjct: 172 KQYAFQCHLE----FTPELVAALIAQEDDLDTQSQTETYVQTAEEMQTFDYSSMN 222
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 40.3 bits (93), Expect = 4e-04
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 22 NEFYKIQNRVKFKSPR---ALSIRAT 44
K+Q +K + AL+I+AT
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKAT 45
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 41.9 bits (99), Expect = 5e-04
Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 38/138 (27%)
Query: 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEIL 181
P LGIC G+Q++ ++ G G V + + G + + +
Sbjct: 103 PVLGICYGMQMM---NKVFG---------GTVHKKSVR------EDGVFNISVDNTCSLF 144
Query: 182 DDVGDHH-VYFVHSYR--AMPSDDNKEWVSSTCNYGDNFIASV--RRGNVHAVQFHPEKS 236
+ V H + D + V+ + N +A + ++ QFHPE
Sbjct: 145 RGLQKEEVVLLTHGDSVDKVA--DGFKVVARS----GNIVAGIANESKKLYGAQFHPE-- 196
Query: 237 GDV-----GLSVLRRFLH 249
V G +L+ FL+
Sbjct: 197 --VGLTENGKVILKNFLY 212
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella
burnetii}
Length = 527
Score = 39.8 bits (94), Expect = 0.003
Identities = 32/153 (20%), Positives = 49/153 (32%), Gaps = 59/153 (38%)
Query: 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEIL 181
P LGIC G+Q + LG G V R + + G L++ + +
Sbjct: 84 PVLGICYGMQTMAYQ---------LG---GKVNRTAKA------EFGHAQLRVLNPAFLF 125
Query: 182 DDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGD-------NF-------------IASV 221
D + D + W+S +GD F +A
Sbjct: 126 DGIEDQVSPQGEPLLDV-------WMS----HGDIVSELPPGFEATACTDNSPLAAMADF 174
Query: 222 RRGNVHAVQFHPEKSGDV-----GLSVLRRFLH 249
+R +QFHPE V G +L F+
Sbjct: 175 KR-RFFGLQFHPE----VTHTPQGHRILAHFVI 202
>2a9v_A GMP synthase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2, ligase;
2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Length = 212
Score = 37.9 bits (89), Expect = 0.004
Identities = 29/138 (21%), Positives = 44/138 (31%), Gaps = 37/138 (26%)
Query: 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEIL 181
P LGIC+G Q + + G V + + G + + I
Sbjct: 87 PILGICVGAQFI---ALHFG---------ASVVKAKHP------EFGKTKVSVMHSENIF 128
Query: 182 DDVGDHHVYFV---HSYR--AMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKS 236
+ V H+ +P D S+TC R ++A QFHPE
Sbjct: 129 GGLPSEIT--VWENHNDEIINLPDDFTLAASSATCQVQ--GFYHKTR-PIYATQFHPE-- 181
Query: 237 GDV-----GLSVLRRFLH 249
V G + R F+
Sbjct: 182 --VEHTQYGRDIFRNFIG 197
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces
ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Length = 286
Score = 38.3 bits (88), Expect = 0.005
Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 13/87 (14%)
Query: 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTD 368
E +Y A F + + +++ R L V G +R
Sbjct: 184 STEEIDRYL-HVARAFGFHMVYLYSRNEHVPPEVVRHFRKGLGPD-QVLFVSGNVR---- 237
Query: 369 ANGRHYSSLEVASEYFRSGADKISIGS 395
S +EY SGAD +
Sbjct: 238 -------SGRQVTEYLDSGADYVGFAG 257
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
N-type ATP pyrophosphata transferase (glutamine
amidotransferase); HET: AMP CIT; 2.20A {Escherichia
coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Length = 525
Score = 38.6 bits (91), Expect = 0.006
Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 41/144 (28%)
Query: 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEIL 181
P G+C G+Q + LG G V + + G+ +++ DS ++
Sbjct: 81 PVFGVCYGMQTMAMQ---------LG---GHVEASNER------EFGYAQVEVVNDSALV 122
Query: 182 DDVGDHHVYFVHSYR-----------AMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQ 230
+ D A+PSD + +C + +A+ + + VQ
Sbjct: 123 RGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFA--IMANEEK-RFYGVQ 179
Query: 231 FHPEKSGDV-----GLSVLRRFLH 249
FHPE V G+ +L RF+
Sbjct: 180 FHPE----VTHTRQGMRMLERFVR 199
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Length = 315
Score = 38.1 bits (88), Expect = 0.006
Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 17/131 (12%)
Query: 117 IEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK 176
P G CLG + L +G L V + + +
Sbjct: 121 DGDYFPVWGTCLGFEELSLL--ISGEC--LLTATDTVDV--AMPLNFTGGQLHSRMFQNF 174
Query: 177 DSEILDDVGD------HHVYFVHSYRAMPSDDNKEW---VSSTCNYGDNFIASV--RRGN 225
+E+L + H + + ++ K++ +++ + FI+++ +
Sbjct: 175 PTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYP 234
Query: 226 VHAVQFHPEKS 236
V+ VQ+HPEK+
Sbjct: 235 VYGVQWHPEKA 245
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363,
csgid, similar to peptidase E, hydrolase, protease,
serine protease; HET: MSE; 1.50A {Listeria
monocytogenes}
Length = 206
Score = 35.4 bits (81), Expect = 0.027
Identities = 13/99 (13%), Positives = 28/99 (28%), Gaps = 12/99 (12%)
Query: 67 IRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGI 126
+ L + + L N I+ G + L +TG + + I + ++G
Sbjct: 60 VEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGE 119
Query: 127 CLGLQLLFQSSEENGP------------VNGLGLIPGVV 153
G + + + L L+
Sbjct: 120 SAGAVITSPNIAYIQTMDSTKKAVNLTNYDALNLVDFST 158
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway,
structural genomics; 2.10A {Thermus thermophilus} PDB:
2ywc_A*
Length = 503
Score = 35.9 bits (84), Expect = 0.034
Identities = 37/136 (27%), Positives = 48/136 (35%), Gaps = 34/136 (25%)
Query: 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEIL 181
P LGIC G+QLL Q LG G V R + + G L + +
Sbjct: 73 PLLGICYGMQLLAQE---------LG---GRVERAGRA------EYGKALLTRH-EGPLF 113
Query: 182 DDVGDHH-VYFVHSYR--AMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGD 238
+ V+ H A P V+ T IAS + VQFHPE
Sbjct: 114 RGLEGEVQVWMSHQDAVTAPP--PGWRVVAETEENPVAAIASPDG-RAYGVQFHPE---- 166
Query: 239 V-----GLSVLRRFLH 249
V G+ +L FL
Sbjct: 167 VAHTPKGMQILENFLE 182
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase;
beta-alpha-barrel, TIM-barrel, ketopantoate,
selenomethionin decamer; HET: KPL; 1.80A {Escherichia
coli} SCOP: c.1.12.8
Length = 264
Score = 34.8 bits (81), Expect = 0.053
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 10/50 (20%)
Query: 484 AKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533
A A+E GA ++L C+ ++L K I++A++IPVI GAG
Sbjct: 167 ALALEAAGAQLLVLECV---------PVELAKRITEALAIPVI-GIGAGN 206
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 34.2 bits (78), Expect = 0.067
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 16/106 (15%)
Query: 302 EVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGG 361
++ + A++ GA + G D L L E VP +V G
Sbjct: 109 DLIGIEDKATRAQEVRALGAKFVEMH--AGL-DEQAKPGFDLNGLLAAGEKARVPFSVAG 165
Query: 362 GIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKT 407
G++ + ++GA+ G A+Y A D
Sbjct: 166 GVK------------VATIPAVQKAGAEVAVAGG-AIYGAADPAAA 198
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase,
2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A
{Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Length = 328
Score = 34.6 bits (80), Expect = 0.074
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 478 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFD---MDLIKLISDAVSIPVIASSG 530
A A E LG + ++ +C G D + L+ ++ + +P+IAS G
Sbjct: 125 CTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGG 180
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural
genomics; HET: MSE; 1.75A {Neisseria meningitidis
serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Length = 275
Score = 34.4 bits (80), Expect = 0.078
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
Query: 484 AKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533
AKA +D GA +L+ C+ +L K +++ VS P I GAGA
Sbjct: 167 AKAHDDAGAAVVLMECV---------LAELAKKVTETVSCPTI-GIGAGA 206
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural
genomics, seattle structural genomics center for
infectious disease; 1.80A {Burkholderia thailandensis}
PDB: 3ez4_A
Length = 275
Score = 34.4 bits (80), Expect = 0.081
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 12/50 (24%)
Query: 484 AKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533
A+AVE+ GA I+L + + ++ +SIP I G GA
Sbjct: 179 ARAVEEAGAQLIVLEAV---------PTLVAAEVTRELSIPTI---GIGA 216
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Length = 326
Score = 33.8 bits (78), Expect = 0.12
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 478 IGAYELAKAVEDLGAGEILLNCIDCDGQ-GKGFDMDLIKLISDAVSIPVIASSG 530
+ + LA+ VE GA ++ ++ G G+ L+ +S +V+IPVIA+ G
Sbjct: 131 VASDSLARMVERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGG 184
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural
genomics, PSI, protein structure initiative; 2.80A
{Mycobacterium tuberculosis} SCOP: c.1.12.8
Length = 281
Score = 33.7 bits (78), Expect = 0.14
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 13/62 (20%)
Query: 475 GRPIGAYEL---AKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGA 531
GR A + A AV + GA +++ + +L I+ ++IP + GA
Sbjct: 173 GRGDAAEQTIADAIAVAEAGAFAVVMEMV---------PAELATQITGKLTIPTV-GIGA 222
Query: 532 GA 533
G
Sbjct: 223 GP 224
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A
{Sulfolobus solfataricus}
Length = 535
Score = 33.6 bits (78), Expect = 0.20
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 118 EKDRPFLGICLGLQL 132
E + PFLGIC G QL
Sbjct: 377 EHNIPFLGICFGFQL 391
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; HET: GLN;
2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10
PDB: 1vcn_A 1vcm_A
Length = 550
Score = 33.2 bits (77), Expect = 0.23
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 118 EKDRPFLGICLGLQL 132
E+ P+LGICLGLQ+
Sbjct: 382 ERKIPYLGICLGLQI 396
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE;
1.70A {Oryza sativa japonica group} PDB: 3amk_A
Length = 755
Score = 33.1 bits (76), Expect = 0.26
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 162 FRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMP--------SDDNKEWVSSTCNY 213
F W+ + + ++D + Y +AM +K+ VS N
Sbjct: 538 FPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDM-NE 596
Query: 214 GDNFIASVRRGNVHAVQFHPEKS 236
D I R V FHP K+
Sbjct: 597 KDKVIVFERGDLVFVFNFHPNKT 619
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming),
cytidine 5 triphosphate synthase, ammonia lyase; 2.30A
{Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB:
2ad5_A*
Length = 545
Score = 33.2 bits (77), Expect = 0.26
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 118 EKDRPFLGICLGLQL 132
E + P+LGICLG+Q+
Sbjct: 370 ENNIPYLGICLGMQV 384
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics,
oxidoreductase, flavoprotein; HET: FMN; 1.70A
{Streptococcus pneumoniae} PDB: 2z6j_A*
Length = 332
Score = 32.7 bits (75), Expect = 0.30
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 478 IGAYELAKAVEDLGAGEILLNCIDCDG-QGKGFDMDLIKLISDAVSIPVIASSG 530
+ + LAK +E +GA ++ ++ G GK M L++ ++ A+SIPVIA+ G
Sbjct: 117 VPSVALAKRMEKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGG 170
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II,
structural genomics, protein structure initiative; 2.30A
{Listeria innocua}
Length = 254
Score = 32.3 bits (74), Expect = 0.32
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 117 IEKDRPFLGICLGLQLL 133
++ +P IC G+QL+
Sbjct: 105 LDAGKPIFAICRGMQLV 121
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis,
structural genomics, NPPSFA; 1.65A {Thermus
thermophilus} PDB: 2iss_A*
Length = 297
Score = 32.0 bits (72), Expect = 0.41
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 482 ELAKAVEDLGAGEIL-LNCIDCDGQGKG-----FDMDLIKLISDAVSIPVIASSGAGAVE 535
E A E+ GA ++ L + D + +G D +IK I AVSIPV+A G
Sbjct: 32 EQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIG--- 88
Query: 536 HFSD 539
HF +
Sbjct: 89 HFVE 92
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine
nucleotide biosy process, ligase; HET: XMP; 2.72A
{Plasmodium falciparum}
Length = 556
Score = 32.6 bits (75), Expect = 0.44
Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 29/150 (19%)
Query: 122 PFLGICLGLQLLFQ---------SSEENGP----VNGLGLIPGVVGRFDSSNGFRVPQIG 168
P GIC G+Q + + E G + I + + + +
Sbjct: 85 PIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLY 144
Query: 169 WNALQITKDSEILDDVGDH--HVYFVHSYR--AMPSDDNKEWVSSTCNYGDNFIASVRRG 224
N + + + +++ V+ H+ +P +N VSS+ N I +
Sbjct: 145 SNYKLMNETCCLFENIKSDITTVWMNHNDEVTKIP--ENFYLVSSSENCLICSIYNKEY- 201
Query: 225 NVHAVQFHPEKSGDV-----GLSVLRRFLH 249
N++ VQ+HPE V G + F +
Sbjct: 202 NIYGVQYHPE----VYESLDGELMFYNFAY 227
>2ljw_A ALR2454 protein; novel fold, structural genomics, northeast
structural genomi consortium, NESG, PSI-biology, protein
structure initiative function; NMR {Nostoc SP}
Length = 110
Score = 30.2 bits (68), Expect = 0.49
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 98 AAAMDVLNKTGMAEALCAYIE--KDRPFLGICLGLQL 132
+ + L+ G A + +I K+RP LG + + L
Sbjct: 55 DSVANYLHALGGAVQVKTFITQTKERPRLGKAVSIPL 91
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B*
1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Length = 379
Score = 31.3 bits (72), Expect = 0.78
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 111 EALCAYIEKDRPFLGICLGLQLL 133
A+ ++E D P GICLG QLL
Sbjct: 252 TAIQKFLETDIPVFGICLGHQLL 274
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 31.2 bits (71), Expect = 0.91
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 511 MDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAG 553
+ L+ + +AV IPV+A AG + + +A LAAG
Sbjct: 197 LSLLAQVREAVDIPVVA---AGGIMRGGQI------AAVLAAG 230
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 28.9 bits (65), Expect = 1.00
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 255 PKKPTEGKALKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKEN--EVRN 305
P+ VIA D + ND +L + ++Y + + ++ + V++
Sbjct: 8 PEDNRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQD 60
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 28.6 bits (64), Expect = 1.2
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 255 PKKPTEGKALKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKE 300
+ + VIA D A +L + K ++ + + +K
Sbjct: 19 KGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKT 64
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure,
ATP-binding, cytoplasm, ligase, nucleotide-binding,
purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga
maritima}
Length = 213
Score = 30.1 bits (69), Expect = 1.3
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 25/101 (24%)
Query: 61 RSVRNAIRHLGFGIKDVQTPEDILNANRLIFPG---------VGAFAAAMDVLNKTGMAE 111
R +A+ GF V + + + +I PG GA AA + +A
Sbjct: 17 RDAYHALEINGFEPSYVGLDDKLDDYELIILPGGFSYGDYLRPGAVAA------REKIAF 70
Query: 112 ALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGV 152
+ E+ + +GIC G Q+L + GL+ G
Sbjct: 71 EIAKAAERGKLIMGICNGFQILIEM----------GLLKGA 101
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 30.4 bits (69), Expect = 2.1
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 474 EGRPIGAYELAKAVEDLGA------GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIA 527
E E+A ++ D+ E + +G + +KL+ PV+
Sbjct: 237 EVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLG 296
Query: 528 S 528
Sbjct: 297 V 297
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 27.6 bits (62), Expect = 2.1
Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 267 AKRVIACLDVRANDKGDLVVTKGDQYDVREHTKEN-EVRNL 306
++ + A + +L V +G++ +V +H+K V+N
Sbjct: 7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNE 47
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 27.8 bits (62), Expect = 2.2
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 250 PKTNIPKKPTEGKALKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKEN-EVRNL 306
P ++ P +A V+A D A DL KGDQ V E + E + R+L
Sbjct: 8 PNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSL 65
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 29.7 bits (67), Expect = 2.7
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 246 RFLHPKTNIPKKPTEGKALKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENE 302
+ K N+ P+E +A D A+ L +TKG++ V + E
Sbjct: 26 ARWNSKENLLAGPSENDP----NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGE 78
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 29.5 bits (66), Expect = 2.7
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 478 IGAYELAKAVEDLGAGEIL--LNCIDCDGQGKGF---DMDLIKLISDAVSIPVIASSGAG 532
I E AK LG I L+ QG+ D +K + +V VIA
Sbjct: 126 IATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVI 185
Query: 533 AVEHFSDVFR 542
+ + V
Sbjct: 186 TPDMYKRVMD 195
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel,
pyridoxal 5-phosphate synthase, PLP G3 SNO1,
biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces
cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Length = 291
Score = 29.7 bits (66), Expect = 2.7
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 482 ELAKAVEDLGAGEIL-LNCIDCDGQGKG-----FDMDLIKLISDAVSIPVIASSGAGAVE 535
E AK E GA ++ L I D + G D +IK I ++VSIPV+A G
Sbjct: 22 EQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSVSIPVMAKVRIG--- 78
Query: 536 HFS 538
HF
Sbjct: 79 HFV 81
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 27.2 bits (61), Expect = 3.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTKEN 301
K+V+A D + DL + KGD+Y + E +
Sbjct: 9 KKVVALYDYMPMNANDLQLRKGDEYFILEESNLP 42
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal
phosphate, structural genomi NPPSFA; 2.30A
{Methanocaldococcus jannaschii}
Length = 330
Score = 29.4 bits (65), Expect = 3.2
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 482 ELAKAVEDLGAGEIL-LNCIDCDGQGKG-----FDMDLIKLISDAVSIPVIASSGAGAVE 535
E A+ E+ GA ++ L + D + G D LI+ I DAVSIPV+A G
Sbjct: 28 EQAQIAEEAGAVAVMALERVPADIRAAGGVARMSDPALIEEIMDAVSIPVMAKCRIG--- 84
Query: 536 HFSDVFRKTNASAALAAGIFHRKEVPIQSVKE-HLYKEGIEVRI 578
H ++ A+ + EV Q+ H+YK+ V
Sbjct: 85 HTTE----ALVLEAIGVDMIDESEVLTQADPFFHIYKKKFNVPF 124
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan
biosynthesis, glutamine amidotransferase, allosteric
interaction, lyase; 2.50A {Sulfolobus solfataricus}
SCOP: c.23.16.1
Length = 195
Score = 29.0 bits (66), Expect = 3.5
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 225 NVHAVQFHPE--KSGDVGLSVLRRFLH 249
++ VQFHPE + +G +L FL+
Sbjct: 168 PIYGVQFHPESVGT-SLGYKILYNFLN 193
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 26.7 bits (60), Expect = 3.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 267 AKRVIACLDVRANDKGDLVVTKGDQYDVREHTKEN 301
A+ V A D ND+ DL KGD +R+ +E
Sbjct: 1 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ 35
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 27.3 bits (61), Expect = 3.9
Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTKEN--EVRN 305
VIA D + ND +L + + ++Y + + ++ + V++
Sbjct: 20 TVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQD 59
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 27.1 bits (60), Expect = 4.6
Identities = 7/48 (14%), Positives = 18/48 (37%)
Query: 255 PKKPTEGKALKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENE 302
+ G+ ++ V + + +L KG+ +V E + +
Sbjct: 5 SSGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDP 52
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic
domain, PSI-2, protein structure initiative; HET: MSE;
1.90A {Vibrio parahaemolyticus rimd 2210633} PDB:
3bhc_A*
Length = 252
Score = 28.8 bits (64), Expect = 4.7
Identities = 6/51 (11%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 181 LDDVGDHHVYFV-HSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQ 230
+ D + + + ++ +S Y + S R+ A+
Sbjct: 69 FHPLDDDNFMLILRGINMNENASPEDMLSIRILYFQGALISTRKIPSRAIM 119
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 28.6 bits (64), Expect = 5.5
Identities = 21/150 (14%), Positives = 40/150 (26%), Gaps = 48/150 (32%)
Query: 307 GKPVELARQYYKEGADEI--------SFLNITGFRDFPLGD------LPMLQVLR-LTSE 351
G A + Y+ GA + +F I R + L + SE
Sbjct: 189 GMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSE 248
Query: 352 NVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS---GADKISIGSDAVYAAEDYLKTG 408
+ GG++D D ++ GA + + A D + G
Sbjct: 249 FPASTMIASGGLQDALDV--------------AKAIALGASCTGMAGHFLKALTDSGEEG 294
Query: 409 VK----------------TGKSSLEQISRV 422
+ G ++ + +
Sbjct: 295 LLEEIQLILEELKLIMTVLGARTIADLQKA 324
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 28.3 bits (64), Expect = 6.8
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 324 ISFLNITGFRDFP--LGDLPMLQVLRLTSENVF---VPLTVG 360
+S LN+ P L +LP L L + N +P +
Sbjct: 57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 27.8 bits (61), Expect = 6.9
Identities = 6/61 (9%), Positives = 19/61 (31%)
Query: 241 LSVLRRFLHPKTNIPKKPTEGKALKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKE 300
+ L + + + V+ + DL +G++ ++ T +
Sbjct: 92 IPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQ 151
Query: 301 N 301
+
Sbjct: 152 D 152
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 28.4 bits (64), Expect = 6.9
Identities = 5/53 (9%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 482 ELAKAVEDL------GAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIAS 528
+ + + +L G + + +G + + + + PV+
Sbjct: 248 GVLRELGELPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLTTKPVVGV 300
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain,
signaling protein; 2.04A {Bordetella pertussis} PDB:
3mpl_A
Length = 267
Score = 28.1 bits (63), Expect = 7.5
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 500 IDCDGQGKGFDMDLIKLISD 519
D Q G +++L+
Sbjct: 48 FRTDEQFGGISAAVLQLLQL 67
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 28.1 bits (62), Expect = 8.1
Identities = 5/52 (9%), Positives = 14/52 (26%), Gaps = 3/52 (5%)
Query: 185 GDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDN---FIASVRRGNVHAVQFHP 233
+ F+ ++ S++ +W + F + F
Sbjct: 369 HRENKVFMRKFKIGYSNNGSDWKMIMDDSKRKAKSFEGNNNYDTPELRTFPA 420
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_D*
Length = 1407
Score = 28.4 bits (64), Expect = 9.2
Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 6/89 (6%)
Query: 409 VKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCT 468
+ G++ Q + G ++VV +D + + + G + T
Sbjct: 1040 MIDGQTITRQTDELTGLSSLVV-LDSAERTAGGKD----LRPALKIVDAQGNDVLIPG-T 1093
Query: 469 VNGGREGRPIGAYELAKAVEDLGAGEILL 497
+ P A + + +G+ L
Sbjct: 1094 DMPAQYFLPGKAIVQLEDGVQISSGDTLA 1122
>2o3i_A Hypothetical protein; NESG, CVR68, Q7NTB2, structural genomics,
PSI-2, protein structure initiative; 2.30A
{Chromobacterium violaceum} SCOP: e.73.1.1
Length = 405
Score = 28.2 bits (62), Expect = 9.5
Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 63 VRNAIRHLGFGIKDVQ--TPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKD 120
N + + V+ ++ + + ++ +GA A V G EA A ++
Sbjct: 35 AANFRKGDYYPTDKVRVVDVDEATDGDCVMVAYMGAPDAINQVQWPNGPVEAALAARQRL 94
Query: 121 RPFLGICLGLQLLFQSSEENGPVNGL 146
G +L + + E+G + +
Sbjct: 95 E-----SQGRKLAYVVAPESGALGFV 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.397
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,083,103
Number of extensions: 588624
Number of successful extensions: 2016
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1905
Number of HSP's successfully gapped: 121
Length of query: 578
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 479
Effective length of database: 3,937,614
Effective search space: 1886117106
Effective search space used: 1886117106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.4 bits)