RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 045794
(578 letters)
>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 323
Score = 272 bits (695), Expect = 2e-87
Identities = 189/316 (59%), Positives = 236/316 (74%), Gaps = 1/316 (0%)
Query: 264 LKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADE 323
L +R+IACLDVR ND+GDLVVTKGDQYDVRE + VRNLGKPV+LA++YY++GADE
Sbjct: 5 YGLTRRIIACLDVRTNDQGDLVVTKGDQYDVREKSDGKGVRNLGKPVQLAQKYYQQGADE 64
Query: 324 ISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383
++FLNIT FRD PL D PML+VL+ ++ VFVPLTVGGGI+D D +G +LEVAS Y
Sbjct: 65 VTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLY 124
Query: 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSL-EQISRVYGNQAVVVSIDPRRVYITHP 442
FRSGADK+SIG+DAVYAAE Y + G + +S E IS+ YG QAVV+S+DP+RVY+
Sbjct: 125 FRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQ 184
Query: 443 NDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDC 502
D + K GPNGE+Y WYQCT+ GGRE R +G +EL +A E LGAGEILLNCID
Sbjct: 185 ADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDK 244
Query: 503 DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPI 562
DG G+D++LI+ + DAV IPVIASSGAG EHF + F KT A A L AG+FHR E +
Sbjct: 245 DGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTV 304
Query: 563 QSVKEHLYKEGIEVRI 578
VKE+L + G++VR+
Sbjct: 305 NDVKEYLLEHGLKVRM 320
>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 252
Score = 170 bits (432), Expect = 9e-50
Identities = 117/313 (37%), Positives = 168/313 (53%), Gaps = 62/313 (19%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
+A R+I CLD+ D G VV KG + +R +G PVE+A +Y +EGADEI+
Sbjct: 2 MALRIIPCLDI---DGGAKVVVKGVNFQ--------GIREVGDPVEMAVRYEEEGADEIA 50
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
L+IT + + ++ +E V +P+ VGGG+R LE A+ FR
Sbjct: 51 ILDITAAPEG---RATFIDSVKRVAEAVSIPVLVGGGVRS-----------LEDATTLFR 96
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
+GADK+S+ + AV + ++R +G+Q+ VV+ID +
Sbjct: 97 AGADKVSVNTAAVR------------NPQLVALLAREFGSQSTVVAIDAKW--------- 135
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
NGE +Y+ V GGRE + A + AK VE+LGAGEILL ID DG
Sbjct: 136 ------------NGE---YYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGT 180
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G G+D++LI+ ++D+V IPVIAS GAG VEHF + A A LAA +FH + + I V
Sbjct: 181 GLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAA-AAGADAVLAASLFHFRVLSIAQV 239
Query: 566 KEHLYKEGIEVRI 578
K +L + G+EVRI
Sbjct: 240 KRYLKERGVEVRI 252
>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 251
Score = 152 bits (385), Expect = 5e-43
Identities = 112/313 (35%), Positives = 163/313 (52%), Gaps = 64/313 (20%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR++ CLDV G +V KG + +R+ G PVE AR Y + GADE+
Sbjct: 2 LAKRIVPCLDVH---AGRVV--KGVNFV--------NLRDAGDPVEAARAYDEAGADELV 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+I+ + +L V+ +E VF+PLTVGGG+R LE A +
Sbjct: 49 FLDISATHEE---RAILLDVVARVAERVFIPLTVGGGVRS-----------LEDARKLLL 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
SGADK+S+ S AV E + +++ +G QAVV++ID R
Sbjct: 95 SGADKVSVNSAAVRRPEL------------IRELADHFGAQAVVLAIDARWRGD------ 136
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+ + V GGR + A E A +LGAGEILL +D DG
Sbjct: 137 ------------------FPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGT 178
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
+G+D+ L +++++AV +PVIAS GAG +EHF + F + A AALAA +FH E+PI +
Sbjct: 179 KEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAF-QAGAEAALAASVFHFGEIPIPKL 237
Query: 566 KEHLYKEGIEVRI 578
K +L ++G+ VR+
Sbjct: 238 KRYLAEKGVHVRL 250
>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 232
Score = 143 bits (360), Expect = 7e-40
Identities = 78/224 (34%), Positives = 114/224 (50%), Gaps = 8/224 (3%)
Query: 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED--ILNANRLIFPGVGAFAAAMDVLNK 106
VV ++D +GN++S+ NAI HLG+ ++ V++P+D I +RLI PGVG + +D L
Sbjct: 6 VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFN 65
Query: 107 TGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQ 166
G + + YIE +P +GIC+GLQ LF S E+ GL I + RFD S
Sbjct: 66 RGFEKPIREYIESGKPIMGICVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEI 125
Query: 167 IGWNALQITKDSEILDD----VGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGD-NFIASV 221
+ + LD H + + + +N W + YG FIA+V
Sbjct: 126 GWNSCIPSENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAV 185
Query: 222 RRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTN-IPKKPTEGKAL 264
+ N+ A QFHPEKSG GL+V+ FL ++ IP E K L
Sbjct: 186 NKNNIFATQFHPEKSGKAGLNVIENFLKQQSPPIPNYSAEEKEL 229
>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 253
Score = 142 bits (359), Expect = 2e-39
Identities = 108/313 (34%), Positives = 158/313 (50%), Gaps = 64/313 (20%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR+IACLDV+ D V KG ++ +R+ G PVEL + Y + G DE+
Sbjct: 2 LAKRIIACLDVK-----DGRVVKGSNFE--------NLRDSGDPVELGKFYSEIGIDELV 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT + ML+++ +E + +P TVGGGI DF A+ E
Sbjct: 49 FLDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIHDFETAS-----------ELIL 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
GADK+SI + AV S + QI++ +G+QAVVV+ID +RV
Sbjct: 95 RGADKVSINTAAV------------ENPSLITQIAQTFGSQAVVVAIDAKRV-------- 134
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+ G++ I + VE GAGEILL ID DG
Sbjct: 135 ----------------DGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT 178
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D ++I+ + ++P+IAS GAG +EHF + F A AALAA +FH +E+ ++ +
Sbjct: 179 KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-LAGADAALAASVFHFREIDVREL 237
Query: 566 KEHLYKEGIEVRI 578
KE+L K G+ VR+
Sbjct: 238 KEYLKKHGVNVRL 250
>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2
{Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 218
Score = 135 bits (341), Expect = 2e-37
Identities = 38/213 (17%), Positives = 63/213 (29%), Gaps = 12/213 (5%)
Query: 46 SDSVVTLLDYGAGNVRSVRNAIRHLGFG---IKDVQTPEDILNANRLIFPGVGAFAAAMD 102
S+ + +L G+ N L I V+ D+ + L+ PG +
Sbjct: 1 SEITIGVLSLQ-GDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRC 59
Query: 103 VLNK-TGMAEAL-CAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVV---GRFD 157
+ + AL +P G C G LL ++ E + G
Sbjct: 60 CAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITIC 119
Query: 158 SSNGFRVPQIGWNALQITKDSEILDDV-GDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDN 216
+ +L I DS + + + + S +YG N
Sbjct: 120 RNFYGSQNDSFICSLNIISDSSAFKKDLTAACIRAPYIREILSDEVKVLATFSHESYGPN 179
Query: 217 FIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLH 249
IA+V + N FHPE + F
Sbjct: 180 IIAAVEQNNCLGTVFHPELLPHTA--FQQYFYE 210
>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 200
Score = 127 bits (320), Expect = 1e-34
Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 15/203 (7%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQ----TPEDILNANRLIFPGVGAFAAAMDVLN 105
+ ++ G GN+ ++ ++ +DV + L PGVG F M L
Sbjct: 3 IGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGEGMRRLR 62
Query: 106 KTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVP 165
+ + + + ++E +R +G+CLG+QLLF+ SEE V GL LI G V + S +
Sbjct: 63 ENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMG 122
Query: 166 QIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGN 225
+ + YFVH+YRA+ + + + +T G+ F ++VR+G
Sbjct: 123 WNEVIFKDTFPN---------GYYYFVHTYRAVC--EEEHVLGTTEYDGEIFPSAVRKGR 171
Query: 226 VHAVQFHPEKSGDVGLSVLRRFL 248
+ QFHPEKS +G +L + +
Sbjct: 172 ILGFQFHPEKSSKIGRKLLEKVI 194
>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 195
Score = 119 bits (298), Expect = 1e-31
Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 9/199 (4%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
L+DYG+GN+RS A+ GF + Q P+ A+ L+ PG G F M ++G
Sbjct: 3 ALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQESGF 62
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
E + ++E+ PFLGIC+G+Q+L++ SEE + G+ FR ++
Sbjct: 63 VERVRRHLERGLPFLGICVGMQVLYEGSEEAPG------VRGLGLVPGEVRRFRAGRVPQ 116
Query: 170 NALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAV 229
+ + H YF +SY + + G F A + + N+ A
Sbjct: 117 MGWNALEFGGAFAPLTGRHFYFANSYYGPLTPYSLGK---GEYEGTPFTALLAKENLLAP 173
Query: 230 QFHPEKSGDVGLSVLRRFL 248
QFHPEKSG GL+ L
Sbjct: 174 QFHPEKSGKAGLAFLALAR 192
>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus
subtilis [TaxId: 1423]}
Length = 195
Score = 112 bits (281), Expect = 3e-29
Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 20/200 (10%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ +L G VR +AI G V+ PE + + LI PG +++
Sbjct: 4 IGVLGLQ-GAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGE-STTMRRLIDTYQF 61
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
E L + + +P G C GL +L + + N
Sbjct: 62 MEPLREFAAQGKPMFGTCAGLIILAKEIAGS-----------DNPHLGLLNVVVERNSFG 110
Query: 170 NALQITKDSEILDDVGDH-HVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHA 228
+ + + + + F+ + + + +N E + +A ++G
Sbjct: 111 RQVDSFEADLTIKGLDEPFTGVFIRAPHILEAGENVEV---LSEHNGRIVA-AKQGQFLG 166
Query: 229 VQFHPEKSGDVGLSVLRRFL 248
FHPE + D + + F+
Sbjct: 167 CSFHPELTEDHRV--TQLFV 184
>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 202
Score = 107 bits (267), Expect = 2e-27
Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 18/200 (9%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ +L G VR AI G V+ E + + L+ PG G ++++ G+
Sbjct: 9 IGVLGLQ-GAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPG-GESTTMRRLIDRYGL 66
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
E L + +P G C GL LL + LGL+ V R +
Sbjct: 67 MEPLKQFAAAGKPMFGTCAGLILLAKRIVGY-DEPHLGLMDITVERNSFGRQRESFEAEL 125
Query: 170 NALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAV 229
+ + G V+ + + + V Y D +A R+G
Sbjct: 126 SIKGVGD--------GFVGVFIRAPHI----VEAGDGVDVLATYNDRIVA-ARQGQFLGC 172
Query: 230 QFHPEKSGDVGLSVLRRFLH 249
FHPE + D L ++ FL+
Sbjct: 173 SFHPELTDDHRL--MQYFLN 190
>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Streptomyces
coelicolor [TaxId: 1902]}
Length = 239
Score = 83.4 bits (205), Expect = 1e-18
Identities = 37/304 (12%), Positives = 89/304 (29%), Gaps = 70/304 (23%)
Query: 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFL 327
++ +DVR G V + + + G P+E A + + GA+ + +
Sbjct: 3 LELLPAVDVR---DGQAV--RLVHGE------SGTETSYGSPLEAALAWQRSGAEWLHLV 51
Query: 328 NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387
++ ++ ++ + + + + + + +G
Sbjct: 52 DLDAAFGTG----DNRALIAEVAQAMDIKVELS-----------GGIRDDDTLAAALATG 96
Query: 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEF 447
++++G+ A+ E K + G +I+
Sbjct: 97 CTRVNLGTAALETPEWVAKVIAEHGD----KIAVGL------------------------ 128
Query: 448 KAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK 507
G YE + G ++ I DG +
Sbjct: 129 --------------DVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQ 174
Query: 508 GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDV--FRKTNASAALAAGIFHRKEVPIQSV 565
G +++L+K + A PV+AS G +++ + A+ + K ++
Sbjct: 175 GPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEA 234
Query: 566 KEHL 569
E
Sbjct: 235 LEAT 238
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 196
Score = 60.3 bits (145), Expect = 3e-11
Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 24/202 (11%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ ++D G +R LG K V P DI ++ G+ A ++ +
Sbjct: 4 IYVVDNGGQWTHREWRVLRELGVDTKIV--PNDIDSSELDGLDGLVLSGGAPNIDEELDK 61
Query: 110 AEALCAYIE-KDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG 168
++ YI+ + P LGIC+G Q + S + P+ G
Sbjct: 62 LGSVGKYIDDHNYPILGICVGAQFIALH------------------FGASVVKAKHPEFG 103
Query: 169 WNALQITKDSEILDDVGDH-HVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVH 227
+ + I + V+ H+ + D+ +S+ R ++
Sbjct: 104 KTKVSVMHSENIFGGLPSEITVWENHNDEIINLPDDFTLAASSATCQVQGFYHKTR-PIY 162
Query: 228 AVQFHPE-KSGDVGLSVLRRFL 248
A QFHPE + G + R F+
Sbjct: 163 ATQFHPEVEHTQYGRDIFRNFI 184
>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Thermotoga maritima
[TaxId: 2336]}
Length = 241
Score = 58.1 bits (139), Expect = 4e-10
Identities = 23/208 (11%), Positives = 55/208 (26%), Gaps = 15/208 (7%)
Query: 377 LEVASEYFRSGADKISI----------GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426
+E+ + G I + G + + + + +
Sbjct: 33 VELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLSEFAEHIQIGGGIRSLDYAEKLR 92
Query: 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKA 486
+ + + + + G I L K
Sbjct: 93 KLGYRRQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKR 152
Query: 487 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFR---- 542
+++ G EI+ I+ DG + D L K I+ + V+A+ G + +
Sbjct: 153 LKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTE 212
Query: 543 -KTNASAALAAGIFHRKEVPIQSVKEHL 569
+ F + ++ +K +
Sbjct: 213 TNGLLKGVIVGRAFLEGILTVEVMKRYA 240
Score = 41.5 bits (96), Expect = 1e-04
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 269 RVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLN 328
V+ +D+ ++ KG KEN + PVEL + +EG I ++
Sbjct: 2 LVVPAIDLFRGKVARMI--KGR--------KENTIFYEKDPVELVEKLIEEGFTLIHVVD 51
Query: 329 IT 330
++
Sbjct: 52 LS 53
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli
[TaxId: 562]}
Length = 205
Score = 56.5 bits (135), Expect = 8e-10
Identities = 31/201 (15%), Positives = 66/201 (32%), Gaps = 12/201 (5%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ +LD+G+ + V +R LG + + + R P + + +
Sbjct: 8 ILILDFGSQYTQLVARRVRELGVYCE-LWAWDVTEAQIRDFNPSGIILSGGPESTTEENS 66
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
A E P G+C G+Q + + + +V +
Sbjct: 67 PRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEAS----------NEREFGYAQVEVVND 116
Query: 170 NALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAV 229
+AL + + D ++ + + + ++ I + + V
Sbjct: 117 SALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIMANEEKRFYGV 176
Query: 230 QFHPEKS-GDVGLSVLRRFLH 249
QFHPE + G+ +L RF+
Sbjct: 177 QFHPEVTHTRQGMRMLERFVR 197
>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase,
small subunit C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 228
Score = 53.7 bits (128), Expect = 1e-08
Identities = 34/208 (16%), Positives = 65/208 (31%), Gaps = 39/208 (18%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDV---QTPEDIL--NANRLIFPGVGAFAAAMDVL 104
V D+GA R++ + G + V + ED+L N + + A D
Sbjct: 42 VVAYDFGA--KRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCD-- 97
Query: 105 NKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRV 164
A+ ++E D P GICLG QLL ++G +
Sbjct: 98 ---YAITAIQKFLETDIPVFGICLGHQLLAL-----------------------ASGAKT 131
Query: 165 PQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRR- 223
++ + + ++ H + + + + D + + R
Sbjct: 132 VKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRT 191
Query: 224 -GNVHAVQFHPEKSG--DVGLSVLRRFL 248
+ Q +PE S + F+
Sbjct: 192 DKPAFSFQGNPEASPGPHDAAPLFDHFI 219
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 51.9 bits (123), Expect = 3e-08
Identities = 28/201 (13%), Positives = 54/201 (26%), Gaps = 22/201 (10%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ ++D G V + +R+LG K + P G + L TG
Sbjct: 3 IVIMDNGGQYVHRIWRTLRYLGVETKII--PNTTPLEEIKAMNPKGIIFSGGPSLENTGN 60
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
E + + ++ + L F G
Sbjct: 61 CEKVLEHYDEFNVPILGICLGHQLIAK------------------FFGGKVGRGEKAEYS 102
Query: 170 NALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWV-SSTCNYGDNFIASVRRGNVHA 228
D + + + S+ + ++ + ++
Sbjct: 103 LVEIEIIDEDEIFKGLPKRLKVWESHMDEVKELPPKFKILARSETCPIEAMKHEELPIYG 162
Query: 229 VQFHPEKS-GDVGLSVLRRFL 248
VQFHPE + + G +LR F
Sbjct: 163 VQFHPEVAHTEKGEEILRNFA 183
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 51.4 bits (122), Expect = 9e-08
Identities = 22/164 (13%), Positives = 48/164 (29%), Gaps = 16/164 (9%)
Query: 85 NANRLIFPGVGA-------FAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLL---F 134
+ N ++FPG A N + + P G CLG + L
Sbjct: 59 SINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDD----GDYFPVWGTCLGFEELSLLI 114
Query: 135 QSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHS 194
+ + + + + L + + + +
Sbjct: 115 SGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNF 174
Query: 195 YRAMPSDDNKEWVSSTCNYGDNFIASV--RRGNVHAVQFHPEKS 236
+++ + FI+++ + V+ VQ+HPEK+
Sbjct: 175 TMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKA 218
>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 195
Score = 47.6 bits (112), Expect = 8e-07
Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 20/177 (11%)
Query: 76 DVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135
D + + I + G++ + Y+ K P LG+CLG Q +
Sbjct: 34 DEISIKGIERIDPDRLIISPGPGTPEKR-EDIGVSLDVIKYLGKRTPILGVCLGHQAIGY 92
Query: 136 SSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSY 195
+ + R ++ I + Y
Sbjct: 93 AFGAK------------IRRARKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVV 140
Query: 196 RAMPSDDNKEWVSSTCNYGDNFIASVR--RGNVHAVQFHPEKS-GDVGLSVLRRFLH 249
+ + +S+ DN I ++ ++ VQFHPE +G +L FL+
Sbjct: 141 DEVHRPLIVDAISAE----DNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFLN 193
>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga
maritima [TaxId: 2336]}
Length = 230
Score = 45.0 bits (105), Expect = 8e-06
Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 33/195 (16%)
Query: 62 SVRNAIRHLGFGIKDVQT------PEDILNANRLIFPGVGAFAAAMDVLNK-TGMAEALC 114
+ + R + + T + + ++ G A + + +
Sbjct: 19 MMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIE 78
Query: 115 AYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQI 174
++K+ PFLGICLG Q+L + G +IGW ++
Sbjct: 79 EILKKEIPFLGICLGSQMLAKVL-----------------GASVYRGKNGEEIGWYFVEK 121
Query: 175 TKDSEILDDVGDH-HVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHP 233
D++ + D V+ H +S G +QFH
Sbjct: 122 VSDNKFFREFPDRLRVFQWHGDTFDLPRRATRVFTSE----KYENQGFVYGKAVGLQFHI 177
Query: 234 EKSGDVGLSVLRRFL 248
E VG ++R++
Sbjct: 178 E----VGARTMKRWI 188
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Serratia marcescens [TaxId: 615]}
Length = 192
Score = 38.7 bits (89), Expect = 8e-04
Identities = 26/173 (15%), Positives = 46/173 (26%), Gaps = 28/173 (16%)
Query: 79 TPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSE 138
E + + V + ++ G L + P +GICLG Q + +
Sbjct: 39 IIERLQHME----QPVLMLSPGPGTPSEAGCMPELLQRLRGQLPIIGICLGHQAIVE--- 91
Query: 139 ENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAM 198
G + G + + + + +
Sbjct: 92 ----AYGGQVGQA-----------GEILHGKASAIAHDGEGMFAGMANPLPVARYHSLVG 136
Query: 199 PSDDNKEWVSSTCNYGDNFIASVR--RGNVHAVQFHPEKS-GDVGLSVLRRFL 248
N + + +VR R V QFHPE G +L + L
Sbjct: 137 S---NIPADLTVNARFGEMVMAVRDDRRRVCGFQFHPESILTTHGARLLEQTL 186
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 33.7 bits (76), Expect = 0.042
Identities = 21/161 (13%), Positives = 46/161 (28%), Gaps = 14/161 (8%)
Query: 238 DVGLSVLRRFLHPKTNIPKKPTEGKALKLAKRVIACLDVRANDKGDLVVTKGDQYDVR-E 296
D+ + + + + +++ T + +L + + + A + T +
Sbjct: 56 DLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRT 115
Query: 297 HTKENEVRNLGKPVELARQYYKEGADEISFLNI--TGFRDFPLGDLPMLQVLRLTSENVF 354
H E+ VE A+ + G D I T + L Q L+ ++V
Sbjct: 116 HAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVD 175
Query: 355 VPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGS 395
+ G + G +G
Sbjct: 176 AKVIAEGNVITPDM-----------YKRVMDLGVHCSVVGG 205
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
10665]}
Length = 282
Score = 29.9 bits (66), Expect = 0.80
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 172 LQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEW 206
++I + ++ D + YR P W
Sbjct: 13 VRIDCEESTFHELRDFFSFEADGYRFNPRFRYGNW 47
>d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 408
Score = 29.8 bits (66), Expect = 0.85
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 159 SNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFI 218
+ F+ W+ +T++ DHH Y V + E + C +G +
Sbjct: 228 HDAFQPYN-YWDDF-MTENDGYWGVTIDHHHYQVFAS-DQLERSIDEHIKVACEWGTGVL 284
Query: 219 AS 220
Sbjct: 285 NE 286
>d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Trichoderma reesei,
Endoglucanase I [TaxId: 51453]}
Length = 371
Score = 29.4 bits (66), Expect = 1.1
Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 7/78 (8%)
Query: 368 DANGRHYSSLEVASEYFRSGADKISIGSDAVYAAE------DYLKTGVKTGKSSLEQISR 421
D N R S G + +A DY +GV T SSL
Sbjct: 35 DWNYRWMHDANYNSCTVNGGVNTTLCPDEATCGKNCFIEGVDYAASGVTTSGSSLTMNQY 94
Query: 422 VYGNQAVVVSIDPRRVYI 439
+ + S+ P R+Y+
Sbjct: 95 MPSSSGGYSSVSP-RLYL 111
>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 58
Score = 26.6 bits (59), Expect = 1.5
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKEN--EVRNLGK 308
+A+RV A D A + +L G+ V + + N + N
Sbjct: 1 MARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRG 45
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO)
protein {Salmonella typhimurium [TaxId: 90371]}
Length = 238
Score = 28.5 bits (62), Expect = 2.2
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 500 IDCDGQGKGFDMDLIKLISDAVSIPV 525
D G+ GFD+DL + + +
Sbjct: 20 KDAKGEFIGFDIDLGNEMCKRMQVKC 45
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 28.4 bits (62), Expect = 2.2
Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 11/69 (15%)
Query: 331 GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390
G + + + V + P+ GGI ++ SGA
Sbjct: 232 GVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGL-----------QFLHSGASV 280
Query: 391 ISIGSDAVY 399
+ + S
Sbjct: 281 LQVCSAVQN 289
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 28.3 bits (62), Expect = 2.3
Identities = 21/179 (11%), Positives = 47/179 (26%), Gaps = 14/179 (7%)
Query: 219 ASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPTEGKALKL--AKRVIACLDV 276
A R N + D+ + + + +P T + +L + +D
Sbjct: 47 AVGIRANSVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDC 106
Query: 277 RANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFP 336
D+ D + V+E + + ++ G D +
Sbjct: 107 TKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSR 166
Query: 337 LGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGS 395
P + ++ + + G I + A + G I +G
Sbjct: 167 QEAGPDVALIEAL-CKAGIAVIAEGKIHSPEE-----------AKKINDLGVAGIVVGG 213
>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 26.3 bits (58), Expect = 2.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTKEN 301
K+V+A D + DL + KGD+Y + E +
Sbjct: 9 KKVVALYDYMPMNANDLQLRKGDEYFILEESNLP 42
>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 25.5 bits (56), Expect = 3.5
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 267 AKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGK 308
+ + +A + GDL KGD + + + G+
Sbjct: 1 SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGR 42
>d1d7pm_ b.18.1.2 (M:) C2 domain of factor VIII {Human (Homo
sapiens) [TaxId: 9606]}
Length = 159
Score = 26.7 bits (58), Expect = 4.7
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 11/71 (15%)
Query: 185 GDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDN-FIASVRRGNVHAVQFHPEKSGDVGLSV 243
+V + S D +W N F + P +
Sbjct: 80 SLLTSMYVKEFLISSSQDGHQWTLFFQNGKVKVFQGNQDSFTPVVNCLDP--------PL 131
Query: 244 LRRFL--HPKT 252
L R+L HP++
Sbjct: 132 LTRYLRIHPQS 142
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA
{Campylobacter jejuni [TaxId: 197]}
Length = 248
Score = 27.3 bits (59), Expect = 5.4
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 500 IDCDGQGKGFDMDLIKLISDA 520
+D G +G+D+ L K I+
Sbjct: 27 VDEKGNNQGYDIALAKRIAKE 47
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 221
Score = 27.0 bits (59), Expect = 5.5
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 376 SLEVASEYFRSGADKISIGSDAVYAAEDYLKT 407
+ +GA+ I GS AV+ A +Y +
Sbjct: 181 KPNNTWQVLEAGANAIVAGS-AVFNAPNYAEA 211
>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 254
Score = 27.0 bits (60), Expect = 6.4
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 510 DMDLIKLISDAVSIPVIASSGAGAVEHF 537
D +I+ + +AVSIPV+A G H+
Sbjct: 46 DPTVIEEVMNAVSIPVMAKVRIG---HY 70
>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 63
Score = 24.7 bits (54), Expect = 6.9
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTKENE 302
+ A D + +L + +GD + E+E
Sbjct: 5 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDE 39
>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B,
C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
Length = 654
Score = 27.2 bits (59), Expect = 6.9
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 63 VRNAIRHLGFGIKDVQ---TPEDILNA 86
+ +A G D+Q TPE +L A
Sbjct: 620 LHDACAACGPHWPDLQAPATPEAVLAA 646
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
{Bacillus subtilis [TaxId: 1423]}
Length = 329
Score = 26.7 bits (58), Expect = 7.6
Identities = 12/120 (10%), Positives = 28/120 (23%), Gaps = 28/120 (23%)
Query: 320 GADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLE 378
+ + F + L + GG++D D
Sbjct: 196 FSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDV--------- 246
Query: 379 VASEYFRSGADKISIGSDAVYAAEDYLKTGVK----------------TGKSSLEQISRV 422
++ GA + + A D + G+ G ++ + +
Sbjct: 247 --AKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKA 304
>d1gjia1 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NFKB),
dimerization domain {Chicken (Gallus gallus), C-rel
[TaxId: 9031]}
Length = 100
Score = 25.4 bits (56), Expect = 7.6
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 422 VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454
V+ A+V P IT P V+ + R +D
Sbjct: 54 VHRQVAIVFRTPPFLRDITEPITVKMQLRRPSD 86
>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 26.6 bits (58), Expect = 8.0
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 10/125 (8%)
Query: 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTD 368
PVE A Y + GA +S +T F L + +V E V +PL + D
Sbjct: 67 PVEAALAYARGGARAVSV--LTEPHRFGGSLLDLKRV----REAVDLPLLRKDFVVDPFM 120
Query: 369 ANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAV 428
+ ++ G+ A L+ V+ ++ A
Sbjct: 121 LE--EARAFGASAALLIVALLGELTGAYLEEARRLGLEALVEVHT--ERELEIALEAGAE 176
Query: 429 VVSID 433
V+ I+
Sbjct: 177 VLGIN 181
>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
phosphate synthase {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 231
Score = 26.6 bits (58), Expect = 8.2
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 14/87 (16%)
Query: 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTD 368
ELA Y G + I G+ ++ ++ + L GGGI
Sbjct: 144 DKELAASYALVGEKLFNLPIIYIEYSGTYGNPELVAEVKKVLDKA--RLFYGGGIDSREK 201
Query: 369 ANGRHYSSLEVASEYFRSGADKISIGS 395
A E+ AD I +G+
Sbjct: 202 AR-------EML-----RYADTIIVGN 216
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 230
Score = 26.2 bits (57), Expect = 9.5
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 376 SLEVASEYFRSGADKISIGSDAVYAAEDYLKT 407
+ A + +GA+ + GS AV+ A DY +
Sbjct: 189 GPKNAYKVIEAGANALVAGS-AVFGAPDYAEA 219
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.397
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,146,313
Number of extensions: 103719
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 44
Length of query: 578
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 488
Effective length of database: 1,171,896
Effective search space: 571885248
Effective search space used: 571885248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)