BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045799
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IGA|A Chain A, Model Of Human Iga1 Determined By Solution Scattering
Curve- Fitting And Homology Modelling
pdb|1IGA|B Chain B, Model Of Human Iga1 Determined By Solution Scattering
Curve- Fitting And Homology Modelling
pdb|2ESG|A Chain A, Solution Structure Of The Complex Between Immunoglobulin
Iga1 And Human Serum Albumin
pdb|2ESG|B Chain B, Solution Structure Of The Complex Between Immunoglobulin
Iga1 And Human Serum Albumin
pdb|2QTJ|A Chain A, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|2QTJ|B Chain B, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|2QTJ|C Chain C, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|2QTJ|D Chain D, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|3CHN|A Chain A, Solution Structure Of Human Secretory Iga1
pdb|3CHN|B Chain B, Solution Structure Of Human Secretory Iga1
pdb|3CHN|D Chain D, Solution Structure Of Human Secretory Iga1
pdb|3CHN|C Chain C, Solution Structure Of Human Secretory Iga1
Length = 475
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 12/110 (10%)
Query: 126 TLIFMLSA--VSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFY 183
TL+ + SA SPK PL L + + PDG +++ G F Q L G
Sbjct: 116 TLVTVSSASPTSPKVFPLSLCSTQ----PDGNVVIACLVQGFFPQEPLSVTWSESGQGVT 171
Query: 184 VRG-----DGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDIT 228
R D + Y + L TL + + H+K N SQD+T
Sbjct: 172 ARNFPPSQDASGDLYTTSSQL-TLPATQCLAGKSVTCHVKHYTNPSQDVT 220
>pdb|3M8O|H Chain H, Human Iga1 Fab Fragment
pdb|3QNX|B Chain B, Orthorhombic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|B Chain B, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|D Chain D, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
Length = 221
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 126 TLIFMLSA--VSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFY 183
TL+ + SA SPK PL L + + PDG +++ G F Q L G
Sbjct: 113 TLVTVSSASPTSPKVFPLSLCSTQ----PDGNVVIACLVQGFFPQEPLSVTWSESGQGVT 168
Query: 184 VRG-----DGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITM 229
R D + Y + L TL + + H+K N SQD+T+
Sbjct: 169 ARNFPPSQDASGDLYTTSSQL-TLPATQCLAGKSVTCHVKHYTNPSQDVTV 218
>pdb|2V25|A Chain A, Structure Of The Campylobacter Jejuni Antigen Peb1a, An
Aspartate And Glutamate Receptor With Bound Aspartate
pdb|2V25|B Chain B, Structure Of The Campylobacter Jejuni Antigen Peb1a, An
Aspartate And Glutamate Receptor With Bound Aspartate
Length = 259
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 13 LPAAIQPQNYPLEEHYQSKA-KKYWDGFYKRHKNKFFKDRHYLEKDWG 59
LP + +PQ+Y + A KY D F K HKN+ L K WG
Sbjct: 215 LPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEI----DALAKKWG 258
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 29/147 (19%)
Query: 34 KYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPL--- 90
+Y G+ +R + + LEK D+ P G VLE GCG G L
Sbjct: 5 EYVHGYSEREALRLSEQAETLEK----LLHHDTVYPPGAK--VLEAGCGIGAQTVILAKN 58
Query: 91 ----------VSHSEFREERVNAFVCNVVNDD-LSRNV-----NPSSVDVVTLIFMLSAV 134
+S + R N + N L N+ SS D + + F+L +
Sbjct: 59 NPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHL 118
Query: 135 -SPKKMPLILQNIKAVLKPDGYILVCD 160
SP++ L+++K VLKP G I V +
Sbjct: 119 QSPEEA---LKSLKKVLKPGGTITVIE 142
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 26/163 (15%)
Query: 76 VLEVGCGAGNTIFPL---------VSHSEFR----EERVNAFVCNVVNDDLSRNVNPSSV 122
VL+VGCG G + L V SE +ER + + DLS P
Sbjct: 57 VLDVGCGDGYGTYKLSRTGYKAVGVDISEVXIQKGKERGEGPDLSFIKGDLSSL--PFEN 114
Query: 123 DVVTLIFMLSAVSPKKMPL-ILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDS 181
+ I ++++ + PL L IK VLK DGY C +G A+ + ++ G
Sbjct: 115 EQFEAIXAINSLEWTEEPLRALNEIKRVLKSDGY--ACIAILGPTAKPRENSYPRLYGK- 171
Query: 182 FYVRGDGTCSFYFSEDFLSTLFLEAGFSTVD-INIHLKQIKNR 223
D C+ +F L E GF VD I ++ + + +
Sbjct: 172 -----DVVCNTXXPWEF-EQLVKEQGFKVVDGIGVYKRGVNEK 208
>pdb|4E2X|A Chain A, X-Ray Structure Of The Y222f Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Dtdp
Length = 416
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 41/175 (23%)
Query: 70 NGNPKVVLEVGCGAGNTIFPL----VSHSEF----------REERVNA---FVCNVVNDD 112
G ++E+GC G + + V H F RE+ + F DD
Sbjct: 105 TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADD 164
Query: 113 LSRNVNPSSVDVVTLIFMLSAVSPKKMPLI---LQNIKAVLKPDGYILVCDYAIGDFAQV 169
+ R P++V + +A + +P + L+ + A+L PDG + D +GD
Sbjct: 165 VRRTEGPANV-------IYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAK 217
Query: 170 KLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDIN---IHLKQIK 221
D Q+ + F F FS + + GF VD+ +H +++
Sbjct: 218 TSFD--QIFDEHF---------FLFSATSVQGMAQRCGFELVDVQRLPVHGGEVR 261
>pdb|4E2Z|A Chain A, X-Ray Structure Of The H225n Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 41/175 (23%)
Query: 70 NGNPKVVLEVGCGAGNTIFPL----VSHSEF----------REERVNA---FVCNVVNDD 112
G ++E+GC G + + V H F RE+ + F DD
Sbjct: 105 TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADD 164
Query: 113 LSRNVNPSSVDVVTLIFMLSAVSPKKMPLI---LQNIKAVLKPDGYILVCDYAIGDFAQV 169
+ R P++V + +A + +P + L+ + A+L PDG + D +GD
Sbjct: 165 VRRTEGPANV-------IYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAK 217
Query: 170 KLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDIN---IHLKQIK 221
D Q+ ++F F FS + + GF VD+ +H +++
Sbjct: 218 TSFD--QIYDENF---------FLFSATSVQGMAQRCGFELVDVQRLPVHGGEVR 261
>pdb|3NDI|A Chain A, X-Ray Structure Of A C-3'-Methyltransferase In Complex
With S- Adenosylmethionine And Dtmp
pdb|3NDJ|A Chain A, X-Ray Structure Of A C-3'-Methyltransferase In Complex
With S- Adenosyl-L-Homocysteine And Sugar Product
pdb|4E32|A Chain A, X-Ray Structure Of The C-3'-Methyltransferase Tcab9 In
Complex With S- Adenosyl-L-Homocysteine And Dtdp-Sugar
Substrate
pdb|4E33|A Chain A, X-Ray Structure Of The C-3'-Methyltransferase Tcab9 In
Complex With S- Adenosyl-L-Homocysteine And Reduced
Dtdp-Sugar Substrate
Length = 416
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 41/175 (23%)
Query: 70 NGNPKVVLEVGCGAGNTIFPL----VSHSEF----------REERVNA---FVCNVVNDD 112
G ++E+GC G + + V H F RE+ + F DD
Sbjct: 105 TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADD 164
Query: 113 LSRNVNPSSVDVVTLIFMLSAVSPKKMPLI---LQNIKAVLKPDGYILVCDYAIGDFAQV 169
+ R P++V + +A + +P + L+ + A+L PDG + D +GD
Sbjct: 165 VRRTEGPANV-------IYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAK 217
Query: 170 KLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDIN---IHLKQIK 221
D Q+ + F F FS + + GF VD+ +H +++
Sbjct: 218 TSFD--QIYDEHF---------FLFSATSVQGMAQRCGFELVDVQRLPVHGGEVR 261
>pdb|4E31|A Chain A, X-Ray Structure Of The Y76f Mutant Of Tcab9, A
C-3'-Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 41/175 (23%)
Query: 70 NGNPKVVLEVGCGAGNTIFPL----VSHSEF----------REERVNA---FVCNVVNDD 112
G ++E+GC G + + V H F RE+ + F DD
Sbjct: 105 TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADD 164
Query: 113 LSRNVNPSSVDVVTLIFMLSAVSPKKMPLI---LQNIKAVLKPDGYILVCDYAIGDFAQV 169
+ R P++V + +A + +P + L+ + A+L PDG + D +GD
Sbjct: 165 VRRTEGPANV-------IYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAK 217
Query: 170 KLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDIN---IHLKQIK 221
D Q+ + F F FS + + GF VD+ +H +++
Sbjct: 218 TSFD--QIYDEHF---------FLFSATSVQGMAQRCGFELVDVQRLPVHGGEVR 261
>pdb|4E2W|A Chain A, X-Ray Structure Of The H181n Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 41/175 (23%)
Query: 70 NGNPKVVLEVGCGAGNTIFPL----VSHSEF----------REERVNA---FVCNVVNDD 112
G ++E+GC G + + V H F RE+ + F DD
Sbjct: 105 TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADD 164
Query: 113 LSRNVNPSSVDVVTLIFMLSAVSPKKMPLI---LQNIKAVLKPDGYILVCDYAIGDFAQV 169
+ R P++V + +A + +P + L+ + A+L PDG + D +GD
Sbjct: 165 VRRTEGPANV-------IYAANTLCNIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAK 217
Query: 170 KLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDIN---IHLKQIK 221
D Q+ + F F FS + + GF VD+ +H +++
Sbjct: 218 TSFD--QIYDEHF---------FLFSATSVQGMAQRCGFELVDVQRLPVHGGEVR 261
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162
P + DVV L F+L S + IL+ L+P G +LV D A
Sbjct: 246 PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA 289
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162
P + DVV L F+L S + IL+ L+P G +LV D A
Sbjct: 246 PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA 289
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 23/110 (20%)
Query: 76 VLEVGCGAGNTIFPLVS----------------------HSEFREERVNAFVCNVVNDDL 113
+L++GCG+G L S S ++ V +
Sbjct: 34 ILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENAS 93
Query: 114 SRNVNPSSVDVVTL-IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162
S + + SS D + F+ S PK+ I++ + VLKP Y+ + ++
Sbjct: 94 SLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG 143
>pdb|4E2Y|A Chain A, X-Ray Structure Of The E224q Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 41/175 (23%)
Query: 70 NGNPKVVLEVGCGAGNTIFPL----VSHSEF----------REERVNA---FVCNVVNDD 112
G ++E+GC G + + V H F RE+ + F DD
Sbjct: 105 TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADD 164
Query: 113 LSRNVNPSSVDVVTLIFMLSAVSPKKMPLI---LQNIKAVLKPDGYILVCDYAIGDFAQV 169
+ R P++V + +A + +P + L+ + A+L PDG + D +GD
Sbjct: 165 VRRTEGPANV-------IYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAK 217
Query: 170 KLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDIN---IHLKQIK 221
D+ I D + F FS + + GF VD+ +H +++
Sbjct: 218 TSFDQ---IYDQHF--------FLFSATSVQGMAQRCGFELVDVQRLPVHGGEVR 261
>pdb|4E30|A Chain A, X-Ray Structure Of The H181nE224Q DOUBLE MUTANT OF TCAB9,
A C-3'- Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Dtdp
Length = 416
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 41/175 (23%)
Query: 70 NGNPKVVLEVGCGAGNTIFPL----VSHSEF----------REERVNA---FVCNVVNDD 112
G ++E+GC G + + V H F RE+ + F DD
Sbjct: 105 TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADD 164
Query: 113 LSRNVNPSSVDVVTLIFMLSAVSPKKMPLI---LQNIKAVLKPDGYILVCDYAIGDFAQV 169
+ R P++V + +A + +P + L+ + A+L PDG + D +GD
Sbjct: 165 VRRTEGPANV-------IYAANTLCNIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAK 217
Query: 170 KLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDIN---IHLKQIK 221
D+ I D + F FS + + GF VD+ +H +++
Sbjct: 218 TSFDQ---IYDQHF--------FLFSATSVQGMAQRCGFELVDVQRLPVHGGEVR 261
>pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
pdb|2EX4|B Chain B, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
Length = 241
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 99 ERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILV 158
+RV + C + D P S DV+ + +++ ++ + + L+ K L+P+G I++
Sbjct: 127 KRVRNYFCCGLQD---FTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVI 183
Query: 159 CD 160
D
Sbjct: 184 KD 185
>pdb|2RCM|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome
P450 74a) At 1.73 A Resolution
pdb|2RCM|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome
P450 74a) At 1.73 A Resolution
pdb|3DSJ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome
P450 74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSJ|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome
P450 74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSK|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome
P450 74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid
At 1.55 A Resolution
pdb|3DSK|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome
P450 74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid
At 1.55 A Resolution
Length = 495
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 2 ITTVQRRHRHSLPAAIQPQNYPLEEHYQSKAKKYWDGFYKRHKNKFFKDR 51
+T R LP P NY L K WD FY + +FFK R
Sbjct: 14 LTVATRTGSKDLPIRNIPGNYGLP--IVGPIKDRWDYFYDQGAEEFFKSR 61
>pdb|2RCH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCH|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|2RCL|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|3CLI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3CLI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3DSI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
pdb|3DSI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
Length = 495
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 2 ITTVQRRHRHSLPAAIQPQNYPLEEHYQSKAKKYWDGFYKRHKNKFFKDR 51
+T R LP P NY L K WD FY + +FFK R
Sbjct: 14 LTVATRTGSKDLPIRNIPGNYGLP--IVGPIKDRWDYFYDQGAEEFFKSR 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,183,347
Number of Sequences: 62578
Number of extensions: 306651
Number of successful extensions: 634
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 23
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)