Query 045799
Match_columns 231
No_of_seqs 141 out of 2106
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 05:39:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2361 Predicted methyltransf 100.0 6.4E-35 1.4E-39 215.4 14.2 209 18-231 21-253 (264)
2 PLN02396 hexaprenyldihydroxybe 99.8 1.3E-19 2.9E-24 144.7 12.0 186 21-219 77-293 (322)
3 COG2226 UbiE Methylase involve 99.8 2.1E-19 4.6E-24 136.5 9.8 138 71-215 50-224 (238)
4 COG2227 UbiG 2-polyprenyl-3-me 99.8 6.4E-20 1.4E-24 137.1 6.5 185 19-221 11-221 (243)
5 PF13489 Methyltransf_23: Meth 99.8 1.4E-19 2.9E-24 132.0 7.4 127 71-212 21-160 (161)
6 PF01209 Ubie_methyltran: ubiE 99.8 5E-19 1.1E-23 135.7 6.7 141 71-216 46-221 (233)
7 PLN02244 tocopherol O-methyltr 99.8 1E-18 2.2E-23 141.8 5.8 137 71-220 117-283 (340)
8 PRK11036 putative S-adenosyl-L 99.7 7.8E-18 1.7E-22 131.8 9.1 177 26-216 4-208 (255)
9 PLN02233 ubiquinone biosynthes 99.7 1.1E-17 2.5E-22 130.9 9.9 141 71-216 72-249 (261)
10 KOG1270 Methyltransferases [Co 99.7 3.1E-18 6.7E-23 128.9 4.1 180 23-213 37-247 (282)
11 PTZ00098 phosphoethanolamine N 99.7 2.3E-17 5.1E-22 129.3 7.0 134 70-217 50-204 (263)
12 PRK06202 hypothetical protein; 99.7 1.4E-16 3E-21 123.1 8.3 148 71-221 59-228 (232)
13 PRK14103 trans-aconitate 2-met 99.7 4.8E-16 1E-20 121.7 11.2 139 71-215 28-184 (255)
14 PRK15068 tRNA mo(5)U34 methylt 99.7 3.9E-16 8.6E-21 125.5 10.1 134 71-219 121-278 (322)
15 TIGR02752 MenG_heptapren 2-hep 99.7 3.1E-16 6.7E-21 121.1 9.0 142 71-217 44-220 (231)
16 TIGR00452 methyltransferase, p 99.7 4.5E-16 9.7E-21 124.0 9.9 136 71-220 120-278 (314)
17 KOG4300 Predicted methyltransf 99.7 1.9E-15 4.1E-20 109.9 11.1 133 72-216 76-233 (252)
18 PLN02585 magnesium protoporphy 99.6 7.8E-16 1.7E-20 122.8 8.7 200 2-217 71-301 (315)
19 PRK10258 biotin biosynthesis p 99.6 1.3E-14 2.8E-19 113.4 14.0 124 71-210 41-182 (251)
20 PRK11207 tellurite resistance 99.6 2.3E-15 5E-20 113.2 9.2 119 71-215 29-170 (197)
21 PF02353 CMAS: Mycolic acid cy 99.6 1.8E-15 3.8E-20 118.7 8.3 138 69-217 59-219 (273)
22 COG2230 Cfa Cyclopropane fatty 99.6 5.2E-16 1.1E-20 120.1 5.1 134 69-216 69-224 (283)
23 PLN02490 MPBQ/MSBQ methyltrans 99.6 6E-15 1.3E-19 118.5 11.3 128 71-218 112-259 (340)
24 KOG1540 Ubiquinone biosynthesi 99.6 1.2E-14 2.7E-19 109.0 12.0 141 70-212 98-278 (296)
25 PLN02336 phosphoethanolamine N 99.6 3.7E-15 8E-20 126.7 10.2 129 71-216 265-415 (475)
26 TIGR02021 BchM-ChlM magnesium 99.6 4.3E-15 9.2E-20 113.8 8.3 178 24-218 5-209 (219)
27 PRK05134 bifunctional 3-demeth 99.6 1.2E-14 2.7E-19 112.3 10.7 177 22-215 6-205 (233)
28 PF08241 Methyltransf_11: Meth 99.6 1.5E-15 3.2E-20 100.6 4.4 75 77-158 1-95 (95)
29 TIGR00477 tehB tellurite resis 99.6 9.3E-15 2E-19 109.8 9.1 120 71-216 29-170 (195)
30 PRK15451 tRNA cmo(5)U34 methyl 99.6 5.9E-15 1.3E-19 114.9 8.3 140 71-212 55-227 (247)
31 PRK05785 hypothetical protein; 99.6 5.2E-15 1.1E-19 113.5 7.8 76 71-153 50-140 (226)
32 smart00828 PKS_MT Methyltransf 99.6 1.1E-14 2.3E-19 112.1 9.1 125 74-220 1-149 (224)
33 PF03848 TehB: Tellurite resis 99.6 1.2E-14 2.7E-19 107.2 8.8 124 71-220 29-174 (192)
34 TIGR00740 methyltransferase, p 99.6 3.8E-15 8.3E-20 115.6 6.2 140 71-212 52-224 (239)
35 PF08242 Methyltransf_12: Meth 99.6 3.2E-15 6.9E-20 100.1 4.8 74 77-156 1-99 (99)
36 TIGR03840 TMPT_Se_Te thiopurin 99.6 2.5E-14 5.5E-19 108.4 10.1 150 34-216 1-188 (213)
37 PRK07580 Mg-protoporphyrin IX 99.6 1.5E-14 3.2E-19 111.7 8.5 177 25-217 14-216 (230)
38 PF08003 Methyltransf_9: Prote 99.5 7.4E-14 1.6E-18 108.4 11.4 136 70-220 113-272 (315)
39 PRK11873 arsM arsenite S-adeno 99.5 6.2E-14 1.3E-18 110.9 10.8 135 70-217 75-232 (272)
40 PRK00216 ubiE ubiquinone/menaq 99.5 1.1E-13 2.3E-18 107.4 10.9 142 71-217 50-227 (239)
41 PRK12335 tellurite resistance 99.5 4.4E-14 9.5E-19 112.4 8.1 118 73-215 121-259 (287)
42 PRK13255 thiopurine S-methyltr 99.5 8E-14 1.7E-18 106.1 9.2 153 33-218 3-193 (218)
43 TIGR02072 BioC biotin biosynth 99.5 1.1E-13 2.4E-18 107.3 9.9 126 72-217 34-178 (240)
44 TIGR01983 UbiG ubiquinone bios 99.5 1.5E-13 3.2E-18 105.7 9.7 138 71-217 44-205 (224)
45 PRK01683 trans-aconitate 2-met 99.5 2.1E-13 4.5E-18 107.1 10.6 138 71-215 30-187 (258)
46 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 1.4E-13 3E-18 105.6 9.0 144 71-220 38-215 (223)
47 TIGR02081 metW methionine bios 99.5 9.1E-14 2E-18 104.4 7.7 144 71-224 12-176 (194)
48 KOG1271 Methyltransferases [Ge 99.5 6.2E-13 1.3E-17 95.1 10.9 118 74-226 69-216 (227)
49 PRK08317 hypothetical protein; 99.5 1.3E-13 2.9E-18 106.8 8.1 141 71-220 18-181 (241)
50 PF05891 Methyltransf_PK: AdoM 99.5 5.1E-13 1.1E-17 99.3 10.5 126 71-215 54-201 (218)
51 PLN02336 phosphoethanolamine N 99.5 1.8E-13 3.8E-18 116.5 9.1 129 71-220 36-187 (475)
52 PRK11705 cyclopropane fatty ac 99.5 3.4E-13 7.4E-18 110.9 9.3 133 70-217 165-314 (383)
53 PF07021 MetW: Methionine bios 99.4 5.5E-13 1.2E-17 97.2 7.8 138 71-218 12-170 (193)
54 TIGR03587 Pse_Me-ase pseudamin 99.4 2.7E-13 5.9E-18 102.3 6.1 87 71-163 42-145 (204)
55 PF13847 Methyltransf_31: Meth 99.4 3E-13 6.4E-18 97.7 5.9 85 71-162 2-112 (152)
56 PF12847 Methyltransf_18: Meth 99.4 3.2E-13 7E-18 92.3 4.8 85 72-160 1-111 (112)
57 COG4976 Predicted methyltransf 99.4 1.4E-12 2.9E-17 96.7 8.2 126 71-219 124-269 (287)
58 TIGR02716 C20_methyl_CrtF C-20 99.4 1.5E-12 3.3E-17 104.7 9.1 133 71-213 148-304 (306)
59 TIGR03438 probable methyltrans 99.4 3.2E-12 6.8E-17 102.3 10.1 127 25-159 20-176 (301)
60 PF06080 DUF938: Protein of un 99.4 9E-13 1.9E-17 97.5 5.5 152 50-215 10-192 (204)
61 PF05401 NodS: Nodulation prot 99.4 1.3E-12 2.7E-17 95.6 6.1 117 71-214 42-178 (201)
62 PRK06922 hypothetical protein; 99.3 9.6E-13 2.1E-17 112.4 5.2 88 71-162 417-539 (677)
63 PF13649 Methyltransf_25: Meth 99.3 1.4E-13 2.9E-18 92.5 -0.5 78 76-154 1-101 (101)
64 PF05724 TPMT: Thiopurine S-me 99.3 7.3E-12 1.6E-16 95.2 8.2 150 33-215 3-190 (218)
65 PRK00107 gidB 16S rRNA methylt 99.3 2.8E-11 6E-16 89.9 10.8 79 71-160 44-145 (187)
66 PRK13256 thiopurine S-methyltr 99.3 1.6E-11 3.6E-16 93.2 8.2 155 32-215 8-197 (226)
67 PF05148 Methyltransf_8: Hypot 99.3 5.6E-11 1.2E-15 87.6 10.1 110 71-215 71-185 (219)
68 smart00138 MeTrc Methyltransfe 99.3 6.2E-12 1.3E-16 98.7 5.2 89 71-159 98-241 (264)
69 TIGR00537 hemK_rel_arch HemK-r 99.3 7E-11 1.5E-15 87.6 10.5 112 71-218 18-168 (179)
70 TIGR00138 gidB 16S rRNA methyl 99.2 6.9E-11 1.5E-15 87.5 9.6 78 72-159 42-141 (181)
71 PRK08287 cobalt-precorrin-6Y C 99.2 1.2E-10 2.6E-15 87.0 9.5 106 71-215 30-156 (187)
72 PRK00517 prmA ribosomal protei 99.2 1.2E-10 2.7E-15 90.8 8.7 105 71-215 118-238 (250)
73 PF05219 DREV: DREV methyltran 99.2 1.1E-10 2.3E-15 89.0 7.9 136 72-219 94-244 (265)
74 PF01234 NNMT_PNMT_TEMT: NNMT/ 99.2 1.1E-10 2.3E-15 90.1 7.4 96 103-214 138-238 (256)
75 PRK11188 rrmJ 23S rRNA methylt 99.1 2.6E-10 5.7E-15 86.4 9.1 92 71-165 50-170 (209)
76 PRK00121 trmB tRNA (guanine-N( 99.1 1.2E-10 2.6E-15 88.0 7.1 86 71-160 39-156 (202)
77 PRK04266 fibrillarin; Provisio 99.1 4.3E-10 9.3E-15 86.1 9.8 116 70-217 70-212 (226)
78 PRK11088 rrmA 23S rRNA methylt 99.1 1.3E-10 2.8E-15 91.9 6.4 86 71-166 84-187 (272)
79 COG4106 Tam Trans-aconitate me 99.1 2.1E-10 4.6E-15 84.5 6.1 136 70-212 28-183 (257)
80 PLN02232 ubiquinone biosynthes 99.1 3.4E-10 7.4E-15 82.3 7.1 110 100-215 27-147 (160)
81 KOG3045 Predicted RNA methylas 99.1 7E-10 1.5E-14 83.9 8.9 111 71-216 179-292 (325)
82 TIGR03534 RF_mod_PrmC protein- 99.1 4.5E-10 9.8E-15 87.8 8.2 108 72-214 87-240 (251)
83 PRK14968 putative methyltransf 99.1 1.1E-09 2.4E-14 81.7 9.3 108 71-214 22-172 (188)
84 TIGR00406 prmA ribosomal prote 99.1 5.3E-10 1.2E-14 89.0 7.9 80 71-160 158-259 (288)
85 PF03291 Pox_MCEL: mRNA cappin 99.1 1.4E-09 3.1E-14 87.5 10.0 150 72-221 62-273 (331)
86 KOG2940 Predicted methyltransf 99.0 5.7E-11 1.2E-15 88.2 1.0 137 71-216 71-228 (325)
87 PLN03075 nicotianamine synthas 99.0 6.5E-10 1.4E-14 87.4 7.0 87 71-160 122-233 (296)
88 KOG1541 Predicted protein carb 99.0 1.6E-09 3.5E-14 80.2 8.4 83 71-159 49-159 (270)
89 TIGR02469 CbiT precorrin-6Y C5 99.0 8.9E-10 1.9E-14 76.5 6.6 80 71-159 18-121 (124)
90 KOG3010 Methyltransferase [Gen 99.0 3.4E-10 7.3E-15 84.9 4.2 80 74-162 35-139 (261)
91 PTZ00146 fibrillarin; Provisio 99.0 4.4E-09 9.5E-14 82.5 10.5 84 69-159 129-236 (293)
92 PF05175 MTS: Methyltransferas 99.0 1.1E-09 2.4E-14 80.5 6.5 84 72-159 31-139 (170)
93 COG2264 PrmA Ribosomal protein 99.0 2.4E-09 5.2E-14 84.1 8.2 106 70-215 160-288 (300)
94 PRK09489 rsmC 16S ribosomal RN 99.0 9.3E-10 2E-14 89.3 6.0 85 72-160 196-303 (342)
95 PRK00377 cbiT cobalt-precorrin 99.0 4.7E-09 1E-13 79.1 9.5 107 70-214 38-169 (198)
96 PF11968 DUF3321: Putative met 99.0 1.4E-08 3E-13 75.5 11.5 119 73-221 52-187 (219)
97 KOG1975 mRNA cap methyltransfe 99.0 4.1E-09 8.9E-14 82.2 9.0 158 53-218 105-320 (389)
98 PRK14967 putative methyltransf 99.0 6.8E-09 1.5E-13 79.7 10.2 87 71-162 35-161 (223)
99 TIGR00091 tRNA (guanine-N(7)-) 99.0 1.7E-09 3.7E-14 81.2 6.6 88 71-162 15-134 (194)
100 PRK14121 tRNA (guanine-N(7)-)- 98.9 2.5E-09 5.4E-14 87.2 7.3 86 71-160 121-235 (390)
101 PRK15001 SAM-dependent 23S rib 98.9 2.3E-09 5E-14 87.7 6.5 85 72-160 228-340 (378)
102 PF00891 Methyltransf_2: O-met 98.9 2.5E-09 5.5E-14 83.1 6.1 89 71-166 99-205 (241)
103 PF06325 PrmA: Ribosomal prote 98.9 6.1E-09 1.3E-13 82.4 8.2 105 70-215 159-283 (295)
104 PF01739 CheR: CheR methyltran 98.9 5.7E-10 1.2E-14 83.3 1.8 89 71-159 30-174 (196)
105 COG4123 Predicted O-methyltran 98.9 1.2E-08 2.5E-13 78.2 8.8 115 71-220 43-199 (248)
106 TIGR00438 rrmJ cell division p 98.9 1.3E-08 2.8E-13 76.1 9.0 88 71-161 31-147 (188)
107 PRK13944 protein-L-isoaspartat 98.9 4E-09 8.6E-14 79.9 6.1 78 71-159 71-172 (205)
108 PRK09328 N5-glutamine S-adenos 98.9 9.4E-09 2E-13 81.5 8.5 108 71-213 107-260 (275)
109 TIGR03533 L3_gln_methyl protei 98.9 1.1E-08 2.3E-13 81.3 8.5 84 72-159 121-250 (284)
110 PHA03411 putative methyltransf 98.9 1.3E-08 2.9E-13 79.0 8.6 112 71-210 63-209 (279)
111 PRK14966 unknown domain/N5-glu 98.8 1.5E-08 3.2E-13 83.3 8.7 106 71-213 250-403 (423)
112 COG2242 CobL Precorrin-6B meth 98.8 6.3E-08 1.4E-12 70.5 10.7 113 70-222 32-168 (187)
113 KOG3178 Hydroxyindole-O-methyl 98.8 1.1E-08 2.5E-13 81.1 6.5 132 73-215 178-330 (342)
114 TIGR01177 conserved hypothetic 98.8 1.1E-08 2.4E-13 83.1 6.6 83 71-159 181-293 (329)
115 TIGR00536 hemK_fam HemK family 98.8 2.3E-08 5E-13 79.6 8.1 82 74-159 116-243 (284)
116 PRK13942 protein-L-isoaspartat 98.8 9.1E-09 2E-13 78.3 5.1 79 70-159 74-175 (212)
117 cd02440 AdoMet_MTases S-adenos 98.8 2.1E-08 4.5E-13 66.7 5.6 79 75-159 1-103 (107)
118 PRK11805 N5-glutamine S-adenos 98.7 4.7E-08 1E-12 78.4 7.9 82 74-159 135-262 (307)
119 TIGR00080 pimt protein-L-isoas 98.7 2.5E-08 5.3E-13 76.2 5.7 79 70-159 75-176 (215)
120 KOG2899 Predicted methyltransf 98.7 9.5E-08 2.1E-12 71.9 8.3 81 118-207 163-247 (288)
121 COG2518 Pcm Protein-L-isoaspar 98.7 6.8E-08 1.5E-12 71.9 7.5 79 70-160 70-169 (209)
122 PRK01544 bifunctional N5-gluta 98.7 8.5E-08 1.8E-12 82.0 9.1 107 72-213 138-291 (506)
123 PRK10611 chemotaxis methyltran 98.7 2.1E-08 4.6E-13 79.1 4.7 41 119-159 221-261 (287)
124 COG1352 CheR Methylase of chem 98.7 3.9E-08 8.4E-13 76.7 6.0 88 72-159 96-240 (268)
125 PRK07402 precorrin-6B methylas 98.7 1.3E-07 2.9E-12 71.1 8.7 80 71-160 39-142 (196)
126 PF13659 Methyltransf_26: Meth 98.7 3.6E-08 7.9E-13 67.7 5.1 83 73-160 1-115 (117)
127 PRK00312 pcm protein-L-isoaspa 98.6 6E-08 1.3E-12 73.9 6.1 78 70-161 76-176 (212)
128 KOG1331 Predicted methyltransf 98.6 5.6E-08 1.2E-12 75.0 5.4 117 32-161 10-144 (293)
129 PF12147 Methyltransf_20: Puta 98.6 3.4E-07 7.4E-12 71.0 9.4 140 71-220 134-303 (311)
130 PRK00811 spermidine synthase; 98.6 1.3E-07 2.8E-12 75.2 6.7 86 71-159 75-190 (283)
131 TIGR03439 methyl_EasF probable 98.6 6.8E-07 1.5E-11 71.7 10.7 130 23-159 31-196 (319)
132 PF07942 N2227: N2227-like pro 98.6 1.5E-06 3.2E-11 67.8 11.6 83 119-218 163-245 (270)
133 COG2519 GCD14 tRNA(1-methylade 98.6 5.7E-07 1.2E-11 68.6 8.9 79 69-160 91-195 (256)
134 TIGR03704 PrmC_rel_meth putati 98.5 6.2E-07 1.3E-11 70.0 8.8 83 73-159 87-215 (251)
135 PRK14901 16S rRNA methyltransf 98.5 1.1E-06 2.4E-11 74.0 10.5 92 69-163 249-387 (434)
136 COG2813 RsmC 16S RNA G1207 met 98.5 2.8E-07 6E-12 72.2 6.2 85 71-160 157-266 (300)
137 PF08704 GCD14: tRNA methyltra 98.5 1.3E-06 2.9E-11 67.4 9.8 83 69-159 37-145 (247)
138 PF03141 Methyltransf_29: Puta 98.5 1.2E-07 2.5E-12 78.7 4.1 92 71-163 116-222 (506)
139 PRK10901 16S rRNA methyltransf 98.5 1.2E-06 2.6E-11 73.7 10.3 91 69-163 241-375 (427)
140 COG2890 HemK Methylase of poly 98.5 1.2E-06 2.7E-11 69.3 9.2 101 75-212 113-260 (280)
141 PRK04457 spermidine synthase; 98.5 3.8E-07 8.3E-12 71.6 6.3 90 71-163 65-180 (262)
142 TIGR00417 speE spermidine synt 98.5 4.8E-07 1E-11 71.5 6.7 85 71-159 71-185 (270)
143 PRK01581 speE spermidine synth 98.5 1.1E-06 2.4E-11 71.1 8.7 85 71-159 149-267 (374)
144 TIGR00563 rsmB ribosomal RNA s 98.5 6.2E-07 1.4E-11 75.4 7.6 92 69-164 235-372 (426)
145 COG2521 Predicted archaeal met 98.5 1.8E-06 3.8E-11 64.9 9.0 121 70-215 132-277 (287)
146 PF01135 PCMT: Protein-L-isoas 98.4 2.7E-07 5.8E-12 69.8 4.4 78 70-159 70-171 (209)
147 COG4627 Uncharacterized protei 98.4 4.5E-08 9.8E-13 68.5 -0.0 48 113-160 39-86 (185)
148 PF10294 Methyltransf_16: Puta 98.4 4.5E-07 9.8E-12 66.8 5.1 89 71-161 44-157 (173)
149 PLN02366 spermidine synthase 98.4 9E-07 1.9E-11 70.9 7.0 87 71-159 90-205 (308)
150 PRK14904 16S rRNA methyltransf 98.4 8.9E-07 1.9E-11 74.9 7.4 92 70-164 248-381 (445)
151 PF02390 Methyltransf_4: Putat 98.4 4.5E-07 9.8E-12 68.0 4.5 86 74-160 19-133 (195)
152 PRK11783 rlmL 23S rRNA m(2)G24 98.3 1.2E-06 2.5E-11 78.1 6.5 82 71-159 537-655 (702)
153 KOG2798 Putative trehalase [Ca 98.3 1.4E-05 3.1E-10 62.6 11.5 79 120-214 258-336 (369)
154 PRK03612 spermidine synthase; 98.3 4.6E-06 1E-10 71.8 9.9 86 71-159 296-414 (521)
155 PRK13943 protein-L-isoaspartat 98.3 9.8E-07 2.1E-11 71.1 4.8 78 71-159 79-179 (322)
156 TIGR00446 nop2p NOL1/NOP2/sun 98.2 3E-06 6.4E-11 66.8 6.7 92 70-164 69-203 (264)
157 PRK13168 rumA 23S rRNA m(5)U19 98.2 1.1E-05 2.5E-10 68.2 10.5 78 71-160 296-400 (443)
158 PRK14903 16S rRNA methyltransf 98.2 3.3E-06 7.2E-11 71.0 6.6 92 70-164 235-370 (431)
159 PRK14902 16S rRNA methyltransf 98.2 1.4E-05 3.1E-10 67.7 10.4 90 70-163 248-382 (444)
160 COG0220 Predicted S-adenosylme 98.2 3.8E-06 8.2E-11 64.2 6.2 86 74-160 50-164 (227)
161 PRK15128 23S rRNA m(5)C1962 me 98.2 3.7E-06 8E-11 69.8 5.9 88 71-160 219-339 (396)
162 PLN02781 Probable caffeoyl-CoA 98.2 3.7E-06 7.9E-11 65.0 5.3 82 71-160 67-178 (234)
163 PF09243 Rsm22: Mitochondrial 98.1 9.3E-06 2E-10 64.2 7.1 90 71-165 32-144 (274)
164 PHA03412 putative methyltransf 98.1 5.8E-06 1.3E-10 63.0 5.4 83 72-155 49-158 (241)
165 COG3963 Phospholipid N-methylt 98.1 1.1E-05 2.4E-10 57.6 6.3 104 52-163 34-159 (194)
166 KOG2904 Predicted methyltransf 98.1 6.4E-06 1.4E-10 63.4 5.4 83 73-161 149-286 (328)
167 smart00650 rADc Ribosomal RNA 98.0 1.8E-05 3.8E-10 58.1 6.9 78 71-159 12-112 (169)
168 KOG3987 Uncharacterized conser 98.0 5.6E-07 1.2E-11 66.3 -1.3 136 72-217 112-262 (288)
169 TIGR00478 tly hemolysin TlyA f 98.0 1.6E-05 3.5E-10 60.9 6.4 125 71-215 74-217 (228)
170 PLN02668 indole-3-acetate carb 98.0 0.0001 2.2E-09 60.6 11.0 102 116-217 157-311 (386)
171 PF02527 GidB: rRNA small subu 97.9 4.9E-05 1.1E-09 56.3 7.5 74 75-159 51-147 (184)
172 COG4122 Predicted O-methyltran 97.9 3.4E-05 7.5E-10 58.4 6.3 85 71-163 58-169 (219)
173 TIGR00479 rumA 23S rRNA (uraci 97.9 7.9E-05 1.7E-09 63.0 9.1 22 71-92 291-312 (431)
174 PF01596 Methyltransf_3: O-met 97.9 3.2E-05 6.9E-10 58.4 6.0 84 71-162 44-157 (205)
175 PF01728 FtsJ: FtsJ-like methy 97.9 6.5E-05 1.4E-09 55.7 7.4 89 72-163 23-142 (181)
176 PRK01544 bifunctional N5-gluta 97.9 3E-05 6.5E-10 66.6 6.2 86 71-160 346-462 (506)
177 PF03492 Methyltransf_7: SAM d 97.9 9.9E-05 2.1E-09 60.0 8.8 147 71-217 15-255 (334)
178 PRK03522 rumB 23S rRNA methylu 97.9 0.00012 2.6E-09 59.2 9.2 36 72-113 173-208 (315)
179 KOG3191 Predicted N6-DNA-methy 97.9 0.00022 4.8E-09 51.7 9.3 84 71-159 42-167 (209)
180 KOG1661 Protein-L-isoaspartate 97.8 3.4E-05 7.5E-10 57.1 5.3 77 71-159 81-192 (237)
181 PLN02476 O-methyltransferase 97.8 3.7E-05 8E-10 60.5 5.7 86 71-161 117-229 (278)
182 PLN02672 methionine S-methyltr 97.8 7.3E-05 1.6E-09 68.8 8.1 19 73-91 119-137 (1082)
183 KOG1269 SAM-dependent methyltr 97.8 2.5E-05 5.4E-10 63.8 4.3 87 71-163 109-218 (364)
184 KOG1499 Protein arginine N-met 97.8 2.7E-05 5.8E-10 62.2 4.1 84 71-158 59-165 (346)
185 PRK00536 speE spermidine synth 97.6 0.00018 3.9E-09 56.2 6.5 76 71-159 71-170 (262)
186 PRK11727 23S rRNA mA1618 methy 97.6 0.00041 8.9E-09 55.9 8.4 21 71-91 113-133 (321)
187 PLN02823 spermine synthase 97.5 0.00029 6.3E-09 57.2 6.5 85 71-159 102-219 (336)
188 PF05185 PRMT5: PRMT5 arginine 97.5 0.00022 4.8E-09 60.2 5.4 79 73-157 187-294 (448)
189 KOG2352 Predicted spermine/spe 97.5 0.00056 1.2E-08 57.2 7.5 118 32-161 12-162 (482)
190 PLN02589 caffeoyl-CoA O-methyl 97.4 0.00028 6.2E-09 54.8 5.0 82 71-160 78-190 (247)
191 COG2263 Predicted RNA methylas 97.4 0.0052 1.1E-07 45.2 10.6 38 71-113 44-81 (198)
192 COG0421 SpeE Spermidine syntha 97.3 0.00076 1.7E-08 53.4 6.9 84 72-159 76-189 (282)
193 PRK04148 hypothetical protein; 97.3 0.00091 2E-08 46.6 6.4 80 71-163 15-112 (134)
194 COG4798 Predicted methyltransf 97.3 0.0036 7.9E-08 46.1 9.6 126 69-215 45-205 (238)
195 KOG1709 Guanidinoacetate methy 97.3 0.00036 7.9E-09 52.1 4.5 88 71-160 100-206 (271)
196 COG1041 Predicted DNA modifica 97.3 0.0011 2.3E-08 53.5 7.4 85 70-160 195-310 (347)
197 COG0357 GidB Predicted S-adeno 97.3 0.0034 7.4E-08 47.5 9.7 77 73-159 68-167 (215)
198 PRK10909 rsmD 16S rRNA m(2)G96 97.3 0.0007 1.5E-08 50.9 6.0 85 72-162 53-161 (199)
199 PF03141 Methyltransf_29: Puta 97.3 0.0022 4.7E-08 54.0 9.3 87 71-160 364-467 (506)
200 COG0293 FtsJ 23S rRNA methylas 97.3 0.0018 3.9E-08 48.4 7.5 95 71-165 44-164 (205)
201 COG1189 Predicted rRNA methyla 97.2 0.0057 1.2E-07 46.6 10.0 126 71-216 78-225 (245)
202 PRK14896 ksgA 16S ribosomal RN 97.2 0.00053 1.2E-08 53.9 4.5 22 71-92 28-49 (258)
203 PF01564 Spermine_synth: Sperm 97.2 0.00076 1.7E-08 52.5 5.2 86 71-160 75-191 (246)
204 COG5459 Predicted rRNA methyla 97.1 0.00045 9.7E-09 55.3 3.6 47 119-165 183-230 (484)
205 KOG3201 Uncharacterized conser 97.1 0.00022 4.9E-09 50.7 1.7 41 118-160 100-140 (201)
206 TIGR02085 meth_trns_rumB 23S r 97.1 0.0017 3.8E-08 53.8 6.5 21 72-92 233-253 (374)
207 TIGR00755 ksgA dimethyladenosi 97.1 0.002 4.3E-08 50.5 6.5 22 71-92 28-49 (253)
208 KOG1500 Protein arginine N-met 97.0 0.0011 2.4E-08 52.8 4.8 82 71-158 176-280 (517)
209 COG1092 Predicted SAM-dependen 97.0 0.001 2.2E-08 55.0 4.8 81 72-160 217-336 (393)
210 COG3897 Predicted methyltransf 97.0 0.0055 1.2E-07 45.2 7.9 88 71-167 78-186 (218)
211 PRK00274 ksgA 16S ribosomal RN 97.0 0.00067 1.4E-08 53.7 3.5 37 71-113 41-77 (272)
212 PRK11760 putative 23S rRNA C24 97.0 0.0028 6.2E-08 51.1 6.7 71 71-153 210-296 (357)
213 COG0500 SmtA SAM-dependent met 96.9 0.0054 1.2E-07 43.8 7.7 47 116-165 113-160 (257)
214 TIGR00095 RNA methyltransferas 96.8 0.0068 1.5E-07 45.3 7.5 21 72-92 49-69 (189)
215 KOG2915 tRNA(1-methyladenosine 96.8 0.012 2.5E-07 45.9 8.3 82 69-159 102-208 (314)
216 PRK11933 yebU rRNA (cytosine-C 96.7 0.0048 1E-07 52.5 6.6 91 70-163 111-245 (470)
217 PF02384 N6_Mtase: N-6 DNA Met 96.7 0.0086 1.9E-07 48.4 7.5 104 50-159 30-182 (311)
218 TIGR00027 mthyl_TIGR00027 meth 96.6 0.0052 1.1E-07 48.3 5.5 137 73-213 82-248 (260)
219 PF06859 Bin3: Bicoid-interact 96.5 0.00067 1.5E-08 45.2 0.2 39 121-159 1-43 (110)
220 COG0144 Sun tRNA and rRNA cyto 96.5 0.02 4.3E-07 47.2 8.5 93 69-163 153-291 (355)
221 PRK04338 N(2),N(2)-dimethylgua 96.4 0.0063 1.4E-07 50.5 5.4 77 73-159 58-157 (382)
222 PTZ00338 dimethyladenosine tra 96.4 0.0026 5.5E-08 50.9 2.8 22 71-92 35-56 (294)
223 KOG2793 Putative N2,N2-dimethy 96.4 0.023 4.9E-07 44.0 7.6 37 122-160 163-199 (248)
224 PF04816 DUF633: Family of unk 96.4 0.029 6.2E-07 42.4 8.1 35 76-114 1-35 (205)
225 PF03269 DUF268: Caenorhabditi 96.3 0.012 2.6E-07 42.1 5.5 45 119-163 61-114 (177)
226 PF01269 Fibrillarin: Fibrilla 96.2 0.017 3.7E-07 43.8 6.2 85 70-159 71-177 (229)
227 KOG4589 Cell division protein 96.1 0.011 2.5E-07 43.3 4.6 92 71-165 68-189 (232)
228 PF10672 Methyltrans_SAM: S-ad 96.1 0.0063 1.4E-07 48.3 3.4 85 71-160 122-238 (286)
229 PF03602 Cons_hypoth95: Conser 96.1 0.0028 6.1E-08 47.0 1.3 89 72-163 42-156 (183)
230 PF08123 DOT1: Histone methyla 96.0 0.0042 9.1E-08 46.9 2.0 86 70-159 40-157 (205)
231 KOG1663 O-methyltransferase [S 95.9 0.035 7.6E-07 42.2 6.5 38 118-160 146-183 (237)
232 TIGR02987 met_A_Alw26 type II 95.9 0.022 4.9E-07 49.5 6.4 20 72-91 31-50 (524)
233 COG0030 KsgA Dimethyladenosine 95.7 0.027 5.9E-07 43.9 5.3 56 71-129 29-103 (259)
234 COG1889 NOP1 Fibrillarin-like 95.6 0.23 5.1E-06 37.1 9.4 83 68-159 72-179 (231)
235 PF02475 Met_10: Met-10+ like- 95.4 0.013 2.8E-07 44.1 2.7 76 71-156 100-198 (200)
236 KOG0820 Ribosomal RNA adenine 95.4 0.021 4.5E-07 44.5 3.7 24 69-92 55-78 (315)
237 PF07091 FmrO: Ribosomal RNA m 95.3 0.03 6.6E-07 43.2 4.3 60 71-134 104-184 (251)
238 KOG2920 Predicted methyltransf 95.2 0.013 2.8E-07 45.9 2.2 87 71-159 115-233 (282)
239 PRK13699 putative methylase; P 95.1 0.098 2.1E-06 40.3 6.7 20 139-158 51-70 (227)
240 PF04989 CmcI: Cephalosporin h 95.1 0.097 2.1E-06 39.4 6.4 94 71-167 31-154 (206)
241 KOG3420 Predicted RNA methylas 95.0 0.013 2.9E-07 41.1 1.6 38 71-113 47-84 (185)
242 PF13578 Methyltransf_24: Meth 95.0 0.0081 1.7E-07 40.2 0.5 80 77-160 1-105 (106)
243 PF01170 UPF0020: Putative RNA 95.0 0.024 5.1E-07 42.0 3.0 88 71-158 27-149 (179)
244 KOG1099 SAM-dependent methyltr 94.9 0.03 6.5E-07 42.5 3.2 86 73-160 42-163 (294)
245 COG4262 Predicted spermidine s 94.7 0.35 7.5E-06 39.6 8.8 82 71-160 288-407 (508)
246 COG3315 O-Methyltransferase in 94.6 0.19 4.1E-06 40.3 7.4 112 100-213 144-262 (297)
247 PF13679 Methyltransf_32: Meth 94.4 0.027 5.8E-07 39.9 2.0 43 71-113 24-66 (141)
248 KOG3115 Methyltransferase-like 94.0 0.18 3.8E-06 37.8 5.5 21 71-91 59-79 (249)
249 PF05430 Methyltransf_30: S-ad 93.9 0.18 3.9E-06 34.9 5.1 60 120-216 49-112 (124)
250 PF07757 AdoMet_MTase: Predict 93.7 0.045 9.7E-07 36.4 1.8 37 71-113 57-93 (112)
251 TIGR02143 trmA_only tRNA (urac 93.6 0.045 9.9E-07 45.1 2.2 35 74-114 199-233 (353)
252 TIGR00308 TRM1 tRNA(guanine-26 93.2 0.24 5.1E-06 41.2 5.6 78 73-159 45-146 (374)
253 PF11899 DUF3419: Protein of u 93.0 0.13 2.8E-06 42.7 3.9 49 116-164 290-338 (380)
254 COG1565 Uncharacterized conser 93.0 0.9 1.9E-05 37.2 8.4 76 139-215 221-305 (370)
255 PRK00050 16S rRNA m(4)C1402 me 93.0 0.095 2.1E-06 41.9 2.9 42 71-115 18-59 (296)
256 PRK01747 mnmC bifunctional tRN 92.9 0.39 8.5E-06 43.2 7.1 21 71-91 56-76 (662)
257 COG0742 N6-adenine-specific me 92.9 0.27 5.9E-06 36.4 5.0 88 71-160 42-154 (187)
258 PRK05031 tRNA (uracil-5-)-meth 92.7 0.084 1.8E-06 43.7 2.4 35 74-114 208-242 (362)
259 PF10354 DUF2431: Domain of un 92.7 0.65 1.4E-05 33.9 6.7 88 104-221 58-158 (166)
260 KOG2187 tRNA uracil-5-methyltr 92.5 0.14 3E-06 43.6 3.4 39 70-114 381-419 (534)
261 COG4301 Uncharacterized conser 92.4 0.44 9.6E-06 36.9 5.7 88 72-159 78-192 (321)
262 PF09445 Methyltransf_15: RNA 92.2 0.084 1.8E-06 38.3 1.6 19 75-93 2-20 (163)
263 COG2265 TrmA SAM-dependent met 91.8 1.6 3.5E-05 37.0 9.0 38 71-114 292-329 (432)
264 PF03059 NAS: Nicotianamine sy 91.3 0.46 9.9E-06 37.6 4.9 85 72-159 120-229 (276)
265 KOG1562 Spermidine synthase [A 91.1 0.54 1.2E-05 37.4 5.0 89 69-159 118-235 (337)
266 KOG2539 Mitochondrial/chloropl 90.8 0.27 5.9E-06 41.4 3.4 45 120-164 273-319 (491)
267 PF07109 Mg-por_mtran_C: Magne 90.6 0.7 1.5E-05 30.2 4.5 84 128-218 2-85 (97)
268 TIGR01444 fkbM_fam methyltrans 90.5 0.16 3.4E-06 35.8 1.6 35 75-113 1-35 (143)
269 COG2520 Predicted methyltransf 90.5 3.2 7E-05 34.0 9.2 84 71-165 187-294 (341)
270 COG4076 Predicted RNA methylas 90.5 0.31 6.8E-06 36.0 3.1 80 73-158 33-133 (252)
271 PRK11783 rlmL 23S rRNA m(2)G24 90.3 0.55 1.2E-05 42.5 5.2 21 71-91 189-209 (702)
272 PF06962 rRNA_methylase: Putat 90.3 1.7 3.7E-05 30.6 6.5 47 117-165 42-97 (140)
273 PF04672 Methyltransf_19: S-ad 90.2 0.51 1.1E-05 37.1 4.2 148 50-212 52-233 (267)
274 COG2384 Predicted SAM-dependen 89.9 2.2 4.8E-05 32.5 7.2 103 71-213 15-141 (226)
275 KOG1122 tRNA and rRNA cytosine 89.8 0.84 1.8E-05 38.1 5.3 23 69-91 238-260 (460)
276 PRK11524 putative methyltransf 89.7 0.32 6.9E-06 38.8 2.9 58 100-159 8-79 (284)
277 PF01189 Nol1_Nop2_Fmu: NOL1/N 89.1 0.33 7.1E-06 38.8 2.6 89 70-161 83-220 (283)
278 PF00398 RrnaAD: Ribosomal RNA 88.6 0.43 9.4E-06 37.6 2.9 76 71-152 29-123 (262)
279 KOG2198 tRNA cytosine-5-methyl 87.7 2.6 5.7E-05 34.7 6.7 23 69-91 152-174 (375)
280 KOG2918 Carboxymethyl transfer 86.4 5.5 0.00012 32.1 7.7 86 122-214 189-276 (335)
281 PF05958 tRNA_U5-meth_tr: tRNA 85.4 1.1 2.3E-05 37.1 3.6 34 74-113 198-231 (352)
282 PF14740 DUF4471: Domain of un 84.0 1.3 2.8E-05 35.3 3.4 65 119-212 220-286 (289)
283 KOG1596 Fibrillarin and relate 84.0 2.9 6.3E-05 32.4 5.0 22 70-91 154-175 (317)
284 PF05711 TylF: Macrocin-O-meth 83.8 1.7 3.7E-05 33.9 3.9 26 138-163 190-215 (248)
285 COG3510 CmcI Cephalosporin hyd 83.7 3.4 7.5E-05 30.8 5.1 95 71-167 68-187 (237)
286 KOG2730 Methylase [General fun 81.6 0.97 2.1E-05 34.4 1.7 22 72-93 94-115 (263)
287 COG0286 HsdM Type I restrictio 80.3 8 0.00017 33.6 7.1 21 71-91 185-205 (489)
288 cd01842 SGNH_hydrolase_like_5 79.1 4.8 0.0001 29.7 4.5 47 117-163 46-102 (183)
289 PF11312 DUF3115: Protein of u 78.4 1.5 3.2E-05 35.3 1.9 27 137-163 219-245 (315)
290 PF05971 Methyltransf_10: Prot 78.1 2.7 5.9E-05 33.8 3.3 22 194-215 261-282 (299)
291 cd08283 FDH_like_1 Glutathione 74.9 9 0.0002 31.9 5.8 87 70-160 182-306 (386)
292 COG1064 AdhP Zn-dependent alco 74.4 6.3 0.00014 32.3 4.5 81 68-162 162-261 (339)
293 PF06557 DUF1122: Protein of u 74.3 9.8 0.00021 27.5 4.9 66 140-223 66-131 (170)
294 KOG0822 Protein kinase inhibit 73.9 4.6 9.9E-05 35.0 3.7 87 73-160 368-478 (649)
295 KOG1209 1-Acyl dihydroxyaceton 73.9 7.9 0.00017 29.6 4.6 63 71-133 5-93 (289)
296 PF06016 Reovirus_L2: Reovirus 72.4 55 0.0012 31.9 10.4 130 72-206 822-974 (1289)
297 PF12692 Methyltransf_17: S-ad 71.3 1.8 3.8E-05 30.8 0.6 20 72-91 28-47 (160)
298 KOG4058 Uncharacterized conser 69.5 5.3 0.00011 28.5 2.6 22 70-91 70-91 (199)
299 TIGR00006 S-adenosyl-methyltra 67.7 5.2 0.00011 32.3 2.7 30 137-166 217-246 (305)
300 COG3129 Predicted SAM-dependen 67.7 6.5 0.00014 30.4 3.0 58 71-132 77-164 (292)
301 PF07101 DUF1363: Protein of u 67.0 2.3 4.9E-05 27.5 0.4 11 77-87 7-17 (124)
302 COG0275 Predicted S-adenosylme 65.9 6.2 0.00013 31.7 2.7 30 137-166 221-250 (314)
303 PF02636 Methyltransf_28: Puta 64.7 4.6 9.9E-05 31.6 1.8 75 138-212 172-250 (252)
304 PRK00050 16S rRNA m(4)C1402 me 64.1 6.7 0.00015 31.6 2.7 30 137-166 213-242 (296)
305 COG1243 ELP3 Histone acetyltra 63.8 22 0.00048 30.4 5.6 36 116-151 129-164 (515)
306 PF05206 TRM13: Methyltransfer 63.6 5.8 0.00013 31.2 2.2 21 71-91 17-37 (259)
307 PHA01634 hypothetical protein 63.0 14 0.00031 25.7 3.7 21 71-91 27-47 (156)
308 KOG4022 Dihydropteridine reduc 62.9 58 0.0013 23.9 6.9 14 146-159 115-128 (236)
309 PF04072 LCM: Leucine carboxyl 62.7 2.8 6.2E-05 31.0 0.3 18 74-91 80-97 (183)
310 KOG2671 Putative RNA methylase 61.9 24 0.00051 29.1 5.3 23 69-91 205-227 (421)
311 PF06460 NSP13: Coronavirus NS 60.9 39 0.00084 26.7 6.1 86 69-159 58-168 (299)
312 KOG1481 Cysteine synthase [Ami 60.9 54 0.0012 26.3 6.9 87 73-159 213-329 (391)
313 PF10017 Methyltransf_33: Hist 60.8 12 0.00027 25.8 3.2 27 192-218 94-120 (127)
314 PRK09424 pntA NAD(P) transhydr 60.4 19 0.00042 31.4 5.0 39 120-160 247-285 (509)
315 PF01555 N6_N4_Mtase: DNA meth 59.8 6.8 0.00015 29.6 2.0 22 138-159 34-55 (231)
316 COG0031 CysK Cysteine synthase 59.6 35 0.00076 27.6 5.9 82 74-159 170-264 (300)
317 PF01795 Methyltransf_5: MraW 58.3 6.1 0.00013 32.0 1.5 30 137-166 218-247 (310)
318 cd08254 hydroxyacyl_CoA_DH 6-h 55.9 29 0.00063 27.9 5.2 34 119-160 230-263 (338)
319 KOG1098 Putative SAM-dependent 55.4 10 0.00022 33.7 2.4 37 71-110 43-79 (780)
320 cd05566 PTS_IIB_galactitol PTS 52.5 41 0.00089 21.2 4.5 12 120-131 47-58 (89)
321 PRK05225 ketol-acid reductoiso 52.2 29 0.00063 29.9 4.5 81 71-160 34-131 (487)
322 PF02254 TrkA_N: TrkA-N domain 51.2 21 0.00046 23.7 3.2 11 81-91 4-14 (116)
323 PF02636 Methyltransf_28: Puta 47.4 84 0.0018 24.5 6.3 19 73-91 19-37 (252)
324 PRK08818 prephenate dehydrogen 46.7 37 0.00079 28.4 4.3 76 74-156 5-84 (370)
325 COG1063 Tdh Threonine dehydrog 46.4 81 0.0018 26.0 6.4 34 121-162 238-271 (350)
326 PF07927 YcfA: YcfA-like prote 45.7 36 0.00078 19.3 3.1 17 197-213 2-18 (56)
327 KOG2352 Predicted spermine/spe 44.9 75 0.0016 27.5 5.9 90 71-162 294-418 (482)
328 COG4353 Uncharacterized conser 44.8 97 0.0021 22.5 5.5 70 139-226 72-141 (192)
329 KOG2651 rRNA adenine N-6-methy 44.3 22 0.00047 29.8 2.6 34 71-109 152-185 (476)
330 COG2933 Predicted SAM-dependen 44.1 93 0.002 24.8 5.8 71 71-153 210-296 (358)
331 PF01795 Methyltransf_5: MraW 42.5 25 0.00055 28.5 2.7 82 70-164 18-104 (310)
332 COG5379 BtaA S-adenosylmethion 42.2 53 0.0012 26.6 4.3 43 118-160 324-366 (414)
333 PRK10310 PTS system galactitol 41.6 59 0.0013 21.0 4.0 48 79-130 7-59 (94)
334 PRK11199 tyrA bifunctional cho 41.6 39 0.00085 28.2 3.9 75 72-156 97-171 (374)
335 PF08468 MTS_N: Methyltransfer 41.1 26 0.00056 25.3 2.4 36 120-160 68-105 (155)
336 TIGR00006 S-adenosyl-methyltra 40.8 30 0.00066 28.0 2.9 40 71-114 19-58 (305)
337 PF04445 SAM_MT: Putative SAM- 40.4 25 0.00054 27.3 2.3 57 74-133 77-163 (234)
338 PRK10556 hypothetical protein; 40.2 40 0.00087 22.0 2.8 22 193-214 2-23 (111)
339 PF10094 DUF2332: Uncharacteri 40.1 72 0.0016 26.4 5.0 36 117-152 257-292 (343)
340 COG3414 SgaB Phosphotransferas 39.8 58 0.0013 21.2 3.6 13 79-91 6-18 (93)
341 PRK10742 putative methyltransf 39.8 35 0.00076 26.7 3.0 21 71-91 85-107 (250)
342 KOG4174 Uncharacterized conser 39.4 1.9E+02 0.0042 22.9 7.8 87 71-159 55-189 (282)
343 PRK09489 rsmC 16S ribosomal RN 39.4 41 0.00088 27.8 3.6 39 120-163 75-115 (342)
344 PF07652 Flavi_DEAD: Flaviviru 38.2 1.1E+02 0.0024 21.9 5.1 20 72-91 4-23 (148)
345 KOG1253 tRNA methyltransferase 38.2 19 0.00041 31.1 1.5 83 71-159 108-215 (525)
346 PF09400 DUF2002: Protein of u 37.9 58 0.0012 21.6 3.3 21 193-213 2-22 (111)
347 KOG1269 SAM-dependent methyltr 37.2 93 0.002 26.0 5.3 41 119-164 277-317 (364)
348 KOG1501 Arginine N-methyltrans 37.0 16 0.00035 31.1 0.8 17 72-88 66-82 (636)
349 PF01558 POR: Pyruvate ferredo 35.6 78 0.0017 22.9 4.3 35 118-162 54-88 (173)
350 PF01555 N6_N4_Mtase: DNA meth 35.5 31 0.00066 25.9 2.2 36 70-111 189-224 (231)
351 PF10237 N6-adenineMlase: Prob 35.5 1.7E+02 0.0038 21.2 8.4 39 119-159 84-122 (162)
352 cd04908 ACT_Bt0572_1 N-termina 35.0 68 0.0015 18.8 3.3 57 137-211 9-65 (66)
353 PF01358 PARP_regulatory: Poly 34.8 2.3E+02 0.005 22.9 6.8 78 73-164 59-139 (294)
354 PLN02545 3-hydroxybutyryl-CoA 34.7 59 0.0013 25.9 3.8 28 130-157 87-116 (295)
355 PF03698 UPF0180: Uncharacteri 34.5 41 0.00089 21.2 2.2 22 195-216 9-30 (80)
356 KOG3924 Putative protein methy 34.2 32 0.0007 28.8 2.2 90 68-161 188-309 (419)
357 PRK06274 indolepyruvate oxidor 34.1 1.5E+02 0.0032 22.0 5.7 32 119-160 65-96 (197)
358 PHA03108 poly(A) polymerase sm 33.8 2.3E+02 0.0049 22.8 6.5 81 73-163 61-141 (300)
359 TIGR02884 spore_pdaA delta-lac 33.6 1.6E+02 0.0034 22.5 5.8 50 138-214 172-221 (224)
360 KOG0780 Signal recognition par 33.5 55 0.0012 27.6 3.3 49 116-164 178-226 (483)
361 PF03686 UPF0146: Uncharacteri 33.3 1.7E+02 0.0036 20.4 5.2 80 72-163 13-105 (127)
362 TIGR02764 spore_ybaN_pdaB poly 33.3 1.7E+02 0.0037 21.5 5.8 53 137-214 136-188 (191)
363 KOG0538 Glycolate oxidase [Ene 33.2 1.3E+02 0.0027 24.6 5.1 112 105-226 55-166 (363)
364 COG0287 TyrA Prephenate dehydr 32.5 45 0.00098 26.6 2.7 76 74-156 4-94 (279)
365 cd08237 ribitol-5-phosphate_DH 32.1 1.2E+02 0.0026 24.7 5.3 21 140-160 236-256 (341)
366 TIGR02822 adh_fam_2 zinc-bindi 31.7 1.3E+02 0.0028 24.4 5.4 21 141-161 235-255 (329)
367 PF06399 GFRP: GTP cyclohydrol 31.6 1.1E+02 0.0024 19.3 3.7 26 194-219 50-75 (83)
368 PF03446 NAD_binding_2: NAD bi 31.5 45 0.00098 23.9 2.4 71 82-159 8-93 (163)
369 COG0116 Predicted N6-adenine-s 31.5 68 0.0015 26.9 3.6 21 71-91 190-210 (381)
370 COG0686 Ald Alanine dehydrogen 31.5 1.6E+02 0.0035 24.2 5.5 80 71-157 166-265 (371)
371 cd05188 MDR Medium chain reduc 31.4 1.1E+02 0.0024 23.4 4.8 34 119-160 199-232 (271)
372 TIGR00853 pts-lac PTS system, 31.3 50 0.0011 21.5 2.4 69 74-155 4-76 (95)
373 COG1743 Adenine-specific DNA m 31.1 71 0.0015 29.5 3.9 21 139-159 567-587 (875)
374 PRK14028 pyruvate ferredoxin o 30.6 89 0.0019 25.3 4.2 48 106-160 52-99 (312)
375 COG3660 Predicted nucleoside-d 30.5 2.7E+02 0.0058 22.4 6.4 43 34-90 44-86 (329)
376 COG0604 Qor NADPH:quinone redu 30.4 80 0.0017 25.8 3.9 82 71-161 141-242 (326)
377 PRK08655 prephenate dehydrogen 30.3 64 0.0014 27.6 3.4 32 121-157 58-89 (437)
378 PRK11524 putative methyltransf 30.2 53 0.0011 26.2 2.8 37 70-112 206-242 (284)
379 KOG1252 Cystathionine beta-syn 30.0 28 0.00061 28.5 1.1 88 71-158 210-309 (362)
380 TIGR02437 FadB fatty oxidation 29.6 89 0.0019 28.8 4.4 87 137-223 405-501 (714)
381 PRK03094 hypothetical protein; 29.6 60 0.0013 20.5 2.4 21 195-215 9-29 (80)
382 PHA03297 envelope glycoprotein 29.5 57 0.0012 23.2 2.4 19 69-87 36-54 (185)
383 PRK11730 fadB multifunctional 29.4 77 0.0017 29.1 4.0 94 130-223 396-501 (715)
384 COG1724 Predicted RNA binding 29.2 1E+02 0.0022 18.6 3.1 25 194-218 7-31 (66)
385 smart00540 LEM in nuclear memb 28.9 10 0.00022 20.9 -1.0 31 194-224 6-36 (44)
386 PF08484 Methyltransf_14: C-me 28.5 84 0.0018 22.7 3.3 80 71-159 66-158 (160)
387 PRK08441 oorC 2-oxoglutarate-a 28.4 2.3E+02 0.0049 20.9 5.7 32 118-159 65-96 (183)
388 PRK14029 pyruvate/ketoisovaler 27.4 2E+02 0.0044 21.2 5.3 46 105-160 50-97 (185)
389 TIGR02825 B4_12hDH leukotriene 27.0 1.9E+02 0.0042 23.1 5.6 31 120-159 206-236 (325)
390 COG0416 PlsX Fatty acid/phosph 26.9 63 0.0014 26.5 2.6 19 73-91 139-157 (338)
391 PRK09548 PTS system ascorbate- 26.3 1.3E+02 0.0028 27.0 4.6 55 71-130 504-563 (602)
392 PF03514 GRAS: GRAS domain fam 25.9 3.9E+02 0.0084 22.4 7.2 22 193-214 309-330 (374)
393 PRK08534 pyruvate ferredoxin o 25.7 1.7E+02 0.0038 21.4 4.7 33 119-160 64-97 (181)
394 PF02737 3HCDH_N: 3-hydroxyacy 25.1 1.2E+02 0.0025 22.3 3.7 25 139-163 93-117 (180)
395 PF01861 DUF43: Protein of unk 24.9 3.4E+02 0.0074 21.3 8.2 36 120-158 111-147 (243)
396 PRK08410 2-hydroxyacid dehydro 24.8 46 0.001 27.0 1.6 79 71-158 143-230 (311)
397 cd03143 A4_beta-galactosidase_ 24.8 1.1E+02 0.0024 21.6 3.4 35 120-159 52-86 (154)
398 PRK05808 3-hydroxybutyryl-CoA 24.7 77 0.0017 25.1 2.8 29 195-223 163-191 (282)
399 PRK09590 celB cellobiose phosp 24.4 38 0.00083 22.5 0.9 70 75-155 3-76 (104)
400 cd05567 PTS_IIB_mannitol PTS_I 24.1 91 0.002 19.7 2.6 10 120-129 44-53 (87)
401 PRK11154 fadJ multifunctional 24.0 1.8E+02 0.0039 26.8 5.3 87 137-223 402-498 (708)
402 PF11253 DUF3052: Protein of u 23.5 2.6E+02 0.0057 19.4 6.8 70 119-216 43-112 (127)
403 PF12724 Flavodoxin_5: Flavodo 23.0 2.7E+02 0.0058 19.4 5.1 43 119-161 41-84 (143)
404 PF03484 B5: tRNA synthetase B 22.9 1.2E+02 0.0026 18.3 2.8 20 194-213 19-38 (70)
405 PRK06853 indolepyruvate oxidor 22.8 1.6E+02 0.0034 22.0 4.0 31 120-160 67-97 (197)
406 TIGR02175 PorC_KorC 2-oxoacid: 22.8 2E+02 0.0044 21.0 4.5 33 118-160 63-97 (177)
407 PF03721 UDPG_MGDP_dh_N: UDP-g 22.7 52 0.0011 24.4 1.4 22 139-160 99-120 (185)
408 cd00401 AdoHcyase S-adenosyl-L 22.2 1.3E+02 0.0028 25.6 3.8 78 71-160 200-289 (413)
409 COG4121 Uncharacterized conser 22.2 1.3E+02 0.0029 23.6 3.6 20 72-91 58-77 (252)
410 PF13602 ADH_zinc_N_2: Zinc-bi 22.1 33 0.00072 23.1 0.3 35 118-159 16-50 (127)
411 PRK13699 putative methylase; P 22.1 90 0.002 24.0 2.7 35 70-110 161-195 (227)
412 COG4822 CbiK Cobalamin biosynt 21.9 3.8E+02 0.0083 20.7 6.0 18 194-211 216-233 (265)
413 PF07090 DUF1355: Protein of u 21.9 99 0.0021 22.9 2.7 40 120-159 66-107 (177)
414 PF02558 ApbA: Ketopantoate re 21.8 1.2E+02 0.0026 21.1 3.2 41 119-164 65-105 (151)
415 PF14314 Methyltrans_Mon: Viru 21.4 2E+02 0.0042 26.4 4.8 45 119-163 413-459 (675)
416 PF06925 MGDG_synth: Monogalac 21.4 3E+02 0.0066 19.7 5.2 27 192-218 141-167 (169)
417 COG3019 Predicted metal-bindin 21.2 1.2E+02 0.0027 21.5 2.8 22 197-218 40-61 (149)
418 PRK10537 voltage-gated potassi 21.1 4.3E+02 0.0093 22.4 6.6 20 141-160 317-336 (393)
419 PF01963 TraB: TraB family; I 20.9 2E+02 0.0043 22.2 4.4 19 195-213 241-259 (259)
420 cd08294 leukotriene_B4_DH_like 20.9 2.3E+02 0.005 22.6 5.0 31 120-159 210-240 (329)
421 PF08373 RAP: RAP domain; Int 20.8 1.1E+02 0.0024 17.3 2.3 24 198-221 22-45 (58)
422 COG0541 Ffh Signal recognition 20.6 92 0.002 26.7 2.5 46 118-164 179-225 (451)
423 smart00874 B5 tRNA synthetase 20.2 1.4E+02 0.0031 17.8 2.8 19 194-212 19-37 (71)
424 cd05563 PTS_IIB_ascorbate PTS_ 20.2 1.5E+02 0.0033 18.3 3.1 45 79-129 4-53 (86)
425 PTZ00075 Adenosylhomocysteinas 20.1 1.3E+02 0.0028 26.2 3.3 77 71-159 252-340 (476)
426 PF06897 DUF1269: Protein of u 20.1 2.8E+02 0.006 18.4 6.1 21 139-159 41-61 (102)
No 1
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=100.00 E-value=6.4e-35 Score=215.40 Aligned_cols=209 Identities=41% Similarity=0.776 Sum_probs=181.8
Q ss_pred CCCCcchhHHHhhHHHhhHHHHHHhccCCcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhc-----
Q 045799 18 QPQNYPLEEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVS----- 92 (231)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~----- 92 (231)
.+-...+...|..++++|||.+|+.+.++|+++++|+.+++++++... ..+..+|||||||.|.+...++.
T Consensus 21 ~~~~~~~~~~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~----~~~~~~ilEvGCGvGNtvfPll~~~~n~ 96 (264)
T KOG2361|consen 21 SRVLEEEVVKYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVD----EKSAETILEVGCGVGNTVFPLLKTSPNN 96 (264)
T ss_pred cccchhhhhhhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCcc----ccChhhheeeccCCCcccchhhhcCCCC
Confidence 334445677999999999999999999999999999999999999754 34444899999999999999982
Q ss_pred -------------------CccccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCC
Q 045799 93 -------------------HSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPD 153 (231)
Q Consensus 93 -------------------~~~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~g 153 (231)
+..++...+.....|++.+.+..+.+.+++|+|+++++|..++++....++.+++++||||
T Consensus 97 ~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPG 176 (264)
T KOG2361|consen 97 RLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPG 176 (264)
T ss_pred CeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCC
Confidence 2233334444455555555544567789999999999999999999999999999999999
Q ss_pred eEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEeeeeecccccccccC
Q 045799 154 GYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231 (231)
Q Consensus 154 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~ 231 (231)
|.+++.|++..++.+.++. ..+.+..++|.+++|+..++|+.+++.+++.++||..++..+..+.++||++.+.|.|
T Consensus 177 G~llfrDYg~~DlaqlRF~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~R 253 (264)
T KOG2361|consen 177 GSLLFRDYGRYDLAQLRFK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYR 253 (264)
T ss_pred cEEEEeecccchHHHHhcc-CCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccceeeeeeehhccCccce
Confidence 9999999999999999888 6788999999999999999999999999999999999999999999999999999987
No 2
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.82 E-value=1.3e-19 Score=144.70 Aligned_cols=186 Identities=14% Similarity=0.177 Sum_probs=114.9
Q ss_pred CcchhHHHhhHHHhhHHHH------HHhccCCcccchhhhHHhhcccccCC-CCCCCCCCCeEEEEcCCCCcchHHHhcC
Q 045799 21 NYPLEEHYQSKAKKYWDGF------YKRHKNKFFKDRHYLEKDWGNYFSDD-SCCPNGNPKVVLEVGCGAGNTIFPLVSH 93 (231)
Q Consensus 21 ~~~~~~~~~~~~~~~w~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iLdvGcG~G~~~~~l~~~ 93 (231)
+......|+..+..||+.. +..+..+ ..++...+...+... ......++.+|||||||+|.++..++..
T Consensus 77 ~~~e~~~f~~~a~~WW~~~g~~~~lh~~N~~R----~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~ 152 (322)
T PLN02396 77 NEDELAKFSAIADTWWHSEGPFKPLHQMNPTR----LAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARM 152 (322)
T ss_pred CHHHHHHHHHHHHHhcCCCCCchHHHHhChHH----HHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHc
Confidence 4455778888888999841 1111111 112222221111100 0011245679999999999999888742
Q ss_pred ccccccceeeeeecCCccccc------------------------CCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHh
Q 045799 94 SEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAV 149 (231)
Q Consensus 94 ~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~ 149 (231)
+.+++++|.+..++. .++.+++||+|++.++++|+ .++..++++++++
T Consensus 153 ------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv--~d~~~~L~~l~r~ 224 (322)
T PLN02396 153 ------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHV--ANPAEFCKSLSAL 224 (322)
T ss_pred ------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhc--CCHHHHHHHHHHH
Confidence 346677777755432 13356799999999999999 7899999999999
Q ss_pred cCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEeee
Q 045799 150 LKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQ 219 (231)
Q Consensus 150 Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~ 219 (231)
|||||.+++.+.+............. .....+...+...+..+++++++..+|+++||+++++.-....
T Consensus 225 LkPGG~liist~nr~~~~~~~~i~~~-eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~~~~ 293 (322)
T PLN02396 225 TIPNGATVLSTINRTMRAYASTIVGA-EYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGFVYN 293 (322)
T ss_pred cCCCcEEEEEECCcCHHHHHHhhhhH-HHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeeeEEc
Confidence 99999999998765432211000000 0000010011111234789999999999999999988555443
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.80 E-value=2.1e-19 Score=136.48 Aligned_cols=138 Identities=22% Similarity=0.331 Sum_probs=102.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
.++.+|||||||||.++..++.... ..+++++|++..|+. .||++++||+|.+
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g----~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~ 125 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG----TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTI 125 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC----CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEe
Confidence 4789999999999999999985543 446788888888764 2899999999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhh------hhhc-cccccccceEEeC-------CCeEEEe
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQV------KLLD-RNQMIGDSFYVRG-------DGTCSFY 193 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~-------~~~~~~~ 193 (231)
.+.|+++ .+...+|++++|+|||||.+++.+++.+..... .+.. ..+.+.. +.... ......+
T Consensus 126 ~fglrnv--~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~-~~~~~~~~y~yL~eSi~~~ 202 (238)
T COG2226 126 SFGLRNV--TDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGK-LVAKDAEAYEYLAESIRRF 202 (238)
T ss_pred eehhhcC--CCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhce-eeecChHHHHHHHHHHHhC
Confidence 9999999 789999999999999999999999888754311 0010 0111111 11000 0111236
Q ss_pred eCHHHHHHHHHHcCceEEEEEE
Q 045799 194 FSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 194 ~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
.+.+++..+++++||+.+..+.
T Consensus 203 p~~~~l~~~~~~~gf~~i~~~~ 224 (238)
T COG2226 203 PDQEELKQMIEKAGFEEVRYEN 224 (238)
T ss_pred CCHHHHHHHHHhcCceEEeeEe
Confidence 8899999999999999887443
No 4
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.80 E-value=6.4e-20 Score=137.05 Aligned_cols=185 Identities=17% Similarity=0.174 Sum_probs=125.7
Q ss_pred CCCcchhHHHhhHHHhhHHHHHHhccCCcccch--hhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccc
Q 045799 19 PQNYPLEEHYQSKAKKYWDGFYKRHKNKFFKDR--HYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEF 96 (231)
Q Consensus 19 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~ 96 (231)
.-+..+.+.|..-+..||+.-.+.....-...- .++.......+ ..++++|||||||-|.++..++..
T Consensus 11 ~id~~e~~~F~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~-------~l~g~~vLDvGCGgG~Lse~mAr~--- 80 (243)
T COG2227 11 NVDYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRF-------DLPGLRVLDVGCGGGILSEPLARL--- 80 (243)
T ss_pred cCCHHHHHHHHHHHhhhcCCCCceeeeeeeccchhhhhhhhhhccc-------CCCCCeEEEecCCccHhhHHHHHC---
Confidence 344556789999999999864432222211111 13333322222 147899999999999999999865
Q ss_pred cccceeeeeecCCcccccC----------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCe
Q 045799 97 REERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDG 154 (231)
Q Consensus 97 ~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG 154 (231)
+.+++++|+++.+++. ....++||+|+|..|++|+ +++..+++.+.+++||||
T Consensus 81 ---Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv--~dp~~~~~~c~~lvkP~G 155 (243)
T COG2227 81 ---GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV--PDPESFLRACAKLVKPGG 155 (243)
T ss_pred ---CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc--CCHHHHHHHHHHHcCCCc
Confidence 4578899998877642 1123799999999999999 889999999999999999
Q ss_pred EEEEEeccCCchhhhhhhccccccccceEEeCCCeE--EEeeCHHHHHHHHHHcCceEEEEEEEeeeee
Q 045799 155 YILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTC--SFYFSEDFLSTLFLEAGFSTVDINIHLKQIK 221 (231)
Q Consensus 155 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ 221 (231)
.+++++.+..-..........+.+.. + ...+++ ..++.++++...+.++|+.+....-......
T Consensus 156 ~lf~STinrt~ka~~~~i~~ae~vl~-~--vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~y~p~ 221 (243)
T COG2227 156 ILFLSTINRTLKAYLLAIIGAEYVLR-I--VPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLTYNPL 221 (243)
T ss_pred EEEEeccccCHHHHHHHHHHHHHHHH-h--cCCcchhHHHhcCHHHHHHhcccCCceEEeecceEeccc
Confidence 99999887664433211111111111 1 122332 3478899999999999999998766554443
No 5
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.80 E-value=1.4e-19 Score=132.04 Aligned_cols=127 Identities=24% Similarity=0.380 Sum_probs=95.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-------------cCCCCCCCeeEEEEeeeeeccCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-------------SRNVNPSSVDVVTLIFMLSAVSPK 137 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-------------~~~~~~~~fD~ii~~~~l~~~~~~ 137 (231)
.++.+|||||||+|.++..++.. +.++.++|+++.++ ....++++||+|++..+|+|+ .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~------~~~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~--~ 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR------GFEVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL--P 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT------TSEEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGS--S
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhc--c
Confidence 67899999999999999888543 34788999986543 112466899999999999999 6
Q ss_pred CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEE
Q 045799 138 KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVD 212 (231)
Q Consensus 138 ~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 212 (231)
++..+++++.++|||||++++.++.........+... ... ...+.+..+++.++|.++++++||++++
T Consensus 93 d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 93 DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKW-RYD------RPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHC-CGT------CHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhc-CCc------CccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 8999999999999999999999877643211111110 000 0000223578999999999999999986
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.77 E-value=5e-19 Score=135.74 Aligned_cols=141 Identities=21% Similarity=0.273 Sum_probs=67.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~ 127 (231)
.++.+|||+|||||.++..++.... ....++++|+++.|+.. |+++++||+|++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~---~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~ 122 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVG---PNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTC 122 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS------EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCC---CccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEH
Confidence 6788999999999999988874321 13367888888877642 678999999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh-----h----hc-cccccccc--eEEeCCCeEEEeeC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK-----L----LD-RNQMIGDS--FYVRGDGTCSFYFS 195 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~-----~----~~-~~~~~~~~--~~~~~~~~~~~~~~ 195 (231)
.+.++++ +++.+.+++++|+|||||.+++.+++.+...... + .+ .+..+... .|..-......+.+
T Consensus 123 ~fglrn~--~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~ 200 (233)
T PF01209_consen 123 SFGLRNF--PDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPS 200 (233)
T ss_dssp ES-GGG---SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH--------------------------------
T ss_pred HhhHHhh--CCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccccccc
Confidence 9999999 7899999999999999999999998887643211 0 00 01111111 01111122235788
Q ss_pred HHHHHHHHHHcCceEEEEEEE
Q 045799 196 EDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 196 ~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
.+++.++|+++||+.++....
T Consensus 201 ~~~~~~~l~~~Gf~~v~~~~~ 221 (233)
T PF01209_consen 201 PEELKELLEEAGFKNVEYRPL 221 (233)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 999999999999998876543
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=99.75 E-value=1e-18 Score=141.78 Aligned_cols=137 Identities=17% Similarity=0.227 Sum_probs=94.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++... +.+++++|+++.++. .++++++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-----g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-----GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEE
Confidence 567899999999999998887432 234556665544321 256788999999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh--hhcc----ccccccceEEeCCCeEEEeeCHHHHH
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK--LLDR----NQMIGDSFYVRGDGTCSFYFSEDFLS 200 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~ 200 (231)
+..+++|+ .+...++++++++|||||.+++.++......... .... ...+...++ ...+.+.+++.
T Consensus 192 s~~~~~h~--~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~------~p~~~s~~~~~ 263 (340)
T PLN02244 192 SMESGEHM--PDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY------LPAWCSTSDYV 263 (340)
T ss_pred ECCchhcc--CCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc------CCCCCCHHHHH
Confidence 99999999 7789999999999999999999876543221100 0000 000111111 12246899999
Q ss_pred HHHHHcCceEEEEEEEeeee
Q 045799 201 TLFLEAGFSTVDINIHLKQI 220 (231)
Q Consensus 201 ~~l~~~Gf~~~~~~~~~~~~ 220 (231)
++++++||+.+++..+...+
T Consensus 264 ~~l~~aGf~~v~~~d~s~~v 283 (340)
T PLN02244 264 KLAESLGLQDIKTEDWSEHV 283 (340)
T ss_pred HHHHHCCCCeeEeeeCcHHH
Confidence 99999999999988766543
No 8
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.74 E-value=7.8e-18 Score=131.80 Aligned_cols=177 Identities=18% Similarity=0.271 Sum_probs=111.3
Q ss_pred HHHhhHHHhhHHHHHHhccCCcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeee
Q 045799 26 EHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFV 105 (231)
Q Consensus 26 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~ 105 (231)
..|+..+..|=+.+|......... ..+...+..++..+ ..++.+|||+|||+|.++..++.. +.++++
T Consensus 4 ~~fd~~a~~f~~~~y~~~~g~~r~--~~~~~~~~~~l~~l----~~~~~~vLDiGcG~G~~a~~la~~------g~~v~~ 71 (255)
T PRK11036 4 RNFDDIAEKFSRNIYGTTKGQIRQ--AILWQDLDRLLAEL----PPRPLRVLDAGGGEGQTAIKLAEL------GHQVIL 71 (255)
T ss_pred CChhhHHHHHHHhccCCCccHHHH--HHHHHHHHHHHHhc----CCCCCEEEEeCCCchHHHHHHHHc------CCEEEE
Confidence 356666777777666544333221 12233334444433 245679999999999999988854 336677
Q ss_pred ecCCcccccC-------------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 106 CNVVNDDLSR-------------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 106 ~D~~~~~~~~-------------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+|+++.++.. ++.+++||+|++..+++|+ +++..+++++.++|||||++++..
T Consensus 72 vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 72 CDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWV--ADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred EECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhh--CCHHHHHHHHHHHcCCCeEEEEEE
Confidence 7777655321 2346799999999999999 788999999999999999999876
Q ss_pred ccCCchhhhhhh-ccccccccceEEe--CCCeEEEeeCHHHHHHHHHHcCceEEEEEEE
Q 045799 161 YAIGDFAQVKLL-DRNQMIGDSFYVR--GDGTCSFYFSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 161 ~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
++.......... ............. ........++++++.++|+++||+++...-+
T Consensus 150 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 150 YNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred ECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeeeeE
Confidence 665432111000 0000000000000 0001123578999999999999999876543
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.74 E-value=1.1e-17 Score=130.94 Aligned_cols=141 Identities=20% Similarity=0.265 Sum_probs=95.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------------CCCCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------------RNVNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------------~~~~~~~fD~ 124 (231)
.++.+|||+|||+|.++..++.... ...+++++|+++.|+. .++++++||+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~---~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~ 148 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVG---SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDA 148 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeE
Confidence 5678999999999998877763211 0124566666655431 2567789999
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhh-----c-cccccccceEEeC-----CCeEEEe
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLL-----D-RNQMIGDSFYVRG-----DGTCSFY 193 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~-----~~~~~~~ 193 (231)
|++.+++||+ +++..++++++++|||||.+++.++..+........ . ....+...+.... ......+
T Consensus 149 V~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f 226 (261)
T PLN02233 149 ITMGYGLRNV--VDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEY 226 (261)
T ss_pred EEEecccccC--CCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhc
Confidence 9999999999 789999999999999999999999877643211100 0 0000000000000 0011246
Q ss_pred eCHHHHHHHHHHcCceEEEEEEE
Q 045799 194 FSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 194 ~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
++.+++.++++++||+.++....
T Consensus 227 ~s~~el~~ll~~aGF~~~~~~~~ 249 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAKHYEI 249 (261)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEc
Confidence 89999999999999998876553
No 10
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.72 E-value=3.1e-18 Score=128.95 Aligned_cols=180 Identities=18% Similarity=0.233 Sum_probs=116.9
Q ss_pred chhHHHhhHHHhhHHHHHHhccCCccc-c-hhhhHHhhcccccC-CCCCCCCCCCeEEEEcCCCCcchHHHhcCcccccc
Q 045799 23 PLEEHYQSKAKKYWDGFYKRHKNKFFK-D-RHYLEKDWGNYFSD-DSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREE 99 (231)
Q Consensus 23 ~~~~~~~~~~~~~w~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~-~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~ 99 (231)
....+|...+.++|+.--.+..-.-.+ . ..|+...+...... ....+..-+++|||+|||+|.++.+|+..
T Consensus 37 ~eV~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArl------ 110 (282)
T KOG1270|consen 37 DEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARL------ 110 (282)
T ss_pred HHHHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhh------
Confidence 668899999999999743332211111 1 11333333222211 10001122578999999999999999855
Q ss_pred ceeeeeecCCcccccC-------------C------C-------CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCC
Q 045799 100 RVNAFVCNVVNDDLSR-------------N------V-------NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPD 153 (231)
Q Consensus 100 ~~~~~~~D~~~~~~~~-------------~------~-------~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~g 153 (231)
+.++.++|+++.+++. + + ..+.||+|+|..+++|+ +++..++..+.+.|||+
T Consensus 111 ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevleHV--~dp~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 111 GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVLEHV--KDPQEFLNCLSALLKPN 188 (282)
T ss_pred CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHHHHH--hCHHHHHHHHHHHhCCC
Confidence 4578889988877642 0 0 12469999999999999 99999999999999999
Q ss_pred eEEEEEeccCCchhhhhhhccccccccceEEeCCCeE--EEeeCHHHHHHHHHHcCceEEEE
Q 045799 154 GYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTC--SFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 154 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
|.+++.+.+..-.....-....+.+.. +-..|++ ..|.+++++..+++.+++.+..+
T Consensus 189 G~lfittinrt~lS~~~~i~~~E~vl~---ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v 247 (282)
T KOG1270|consen 189 GRLFITTINRTILSFAGTIFLAEIVLR---IVPKGTHTWEKFINPEELTSILNANGAQVNDV 247 (282)
T ss_pred CceEeeehhhhHHHhhccccHHHHHHH---hcCCCCcCHHHcCCHHHHHHHHHhcCcchhhh
Confidence 999999877654332110000000000 1122332 34789999999999999887765
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.70 E-value=2.3e-17 Score=129.31 Aligned_cols=134 Identities=13% Similarity=0.142 Sum_probs=93.6
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc---------------------cCCCCCCCeeEEEEe
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL---------------------SRNVNPSSVDVVTLI 128 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~---------------------~~~~~~~~fD~ii~~ 128 (231)
..++.+|||||||+|..+..++... +.+++++|+++.++ ..++++++||+|++.
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~ 124 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY-----GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSR 124 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc-----CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEh
Confidence 3678899999999999998886321 23455666554332 124567899999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
.+++|++.+++..++++++++|||||.+++.++........... ....+.. ....+.+..++.++|+++||
T Consensus 125 ~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~l~~aGF 195 (263)
T PTZ00098 125 DAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEE-FKAYIKK--------RKYTLIPIQEYGDLIKSCNF 195 (263)
T ss_pred hhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHH-HHHHHHh--------cCCCCCCHHHHHHHHHHCCC
Confidence 99999865689999999999999999999988755432110000 0000000 01234688999999999999
Q ss_pred eEEEEEEEe
Q 045799 209 STVDINIHL 217 (231)
Q Consensus 209 ~~~~~~~~~ 217 (231)
+++++....
T Consensus 196 ~~v~~~d~~ 204 (263)
T PTZ00098 196 QNVVAKDIS 204 (263)
T ss_pred CeeeEEeCc
Confidence 999876543
No 12
>PRK06202 hypothetical protein; Provisional
Probab=99.68 E-value=1.4e-16 Score=123.06 Aligned_cols=148 Identities=17% Similarity=0.229 Sum_probs=100.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------CCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------NVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------~~~~~~fD~ii~~~~ 130 (231)
.++.+|||+|||+|.++..++..........+++++|+++.++.. +.++++||+|+++++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 456899999999999888776321111123467888887766521 235679999999999
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCC--eEEEeeCHHHHHHHHHHcCc
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDG--TCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~Gf 208 (231)
+||+++++...++++++++++ |.+++.+...+......+...........+...++ ....+++.+++.+++++ ||
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf 215 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GW 215 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CC
Confidence 999965556789999999998 66777777766433322221111111122222222 22357999999999999 99
Q ss_pred eEEEEEEEeeeee
Q 045799 209 STVDINIHLKQIK 221 (231)
Q Consensus 209 ~~~~~~~~~~~~~ 221 (231)
++.....+....+
T Consensus 216 ~~~~~~~~~~~~~ 228 (232)
T PRK06202 216 RVERQWPFRYLLV 228 (232)
T ss_pred eEEeccceeeEEE
Confidence 9999887776654
No 13
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.68 E-value=4.8e-16 Score=121.75 Aligned_cols=139 Identities=16% Similarity=0.065 Sum_probs=91.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------CCCCCCeeEEEEeeeeeccC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------NVNPSSVDVVTLIFMLSAVS 135 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------~~~~~~fD~ii~~~~l~~~~ 135 (231)
.++.+|||||||+|.++..++... . +.+++++|+++.++.. ..++++||+|++..++||+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~--p--~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~- 102 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRW--P--GAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSNAALQWV- 102 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC--C--CCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEehhhhhC-
Confidence 567899999999999998887432 1 3467888888766531 1245799999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhc---cccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEE
Q 045799 136 PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD---RNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVD 212 (231)
Q Consensus 136 ~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 212 (231)
.++..+++++++.|||||.+++..+............ ....+..............+.+.+++.++|+++||++..
T Consensus 103 -~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 103 -PEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDA 181 (255)
T ss_pred -CCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEE
Confidence 6789999999999999999998754321111100000 000010000000000112356899999999999998665
Q ss_pred EEE
Q 045799 213 INI 215 (231)
Q Consensus 213 ~~~ 215 (231)
...
T Consensus 182 ~~~ 184 (255)
T PRK14103 182 WET 184 (255)
T ss_pred Eee
Confidence 544
No 14
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.67 E-value=3.9e-16 Score=125.51 Aligned_cols=134 Identities=20% Similarity=0.189 Sum_probs=91.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++.... ..++++|.+..++. .++ +++||+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~-----~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~ 194 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGA-----KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVF 194 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC-----CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEE
Confidence 4578999999999999988874321 13566666553321 133 57899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+..+++|+ .++..+++++++.|+|||.+++.++...........+ ...|... .......+..++.++|+++
T Consensus 195 s~~vl~H~--~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p------~~~y~~~-~~~~~lps~~~l~~~L~~a 265 (322)
T PRK15068 195 SMGVLYHR--RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP------GDRYAKM-RNVYFIPSVPALKNWLERA 265 (322)
T ss_pred ECChhhcc--CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc------hhHHhcC-ccceeCCCHHHHHHHHHHc
Confidence 99999999 7899999999999999999998765433222111110 0000000 0011245889999999999
Q ss_pred CceEEEEEEEeee
Q 045799 207 GFSTVDINIHLKQ 219 (231)
Q Consensus 207 Gf~~~~~~~~~~~ 219 (231)
||+++++......
T Consensus 266 GF~~i~~~~~~~t 278 (322)
T PRK15068 266 GFKDVRIVDVSVT 278 (322)
T ss_pred CCceEEEEeCCCC
Confidence 9999998765543
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.67 E-value=3.1e-16 Score=121.14 Aligned_cols=142 Identities=21% Similarity=0.269 Sum_probs=94.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..++.... ...+++++|+++.++. .++++++||+|++
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 120 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVG---PEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTI 120 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEE
Confidence 5678999999999999988863311 1224566666544321 1356789999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhh---------cc-ccccccceEE--eCCCeEEEeeC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLL---------DR-NQMIGDSFYV--RGDGTCSFYFS 195 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~---------~~-~~~~~~~~~~--~~~~~~~~~~~ 195 (231)
.++++++ ++...+++++.++|+|||.+++.+...++....... +. ...+...+.. ........+++
T Consensus 121 ~~~l~~~--~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (231)
T TIGR02752 121 GFGLRNV--PDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPG 198 (231)
T ss_pred ecccccC--CCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCC
Confidence 9999999 788999999999999999999887665443211000 00 0000000000 00011124678
Q ss_pred HHHHHHHHHHcCceEEEEEEEe
Q 045799 196 EDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 196 ~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
.+++.++|+++||+++++....
T Consensus 199 ~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 199 MDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HHHHHHHHHHcCCCeeEEEEcc
Confidence 9999999999999999876654
No 16
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.66 E-value=4.5e-16 Score=123.99 Aligned_cols=136 Identities=20% Similarity=0.225 Sum_probs=92.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CC-CCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NV-NPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~-~~~~fD~ii~ 127 (231)
.++.+|||||||+|.++..++.... ..++++|.+..++.. .+ ...+||+|++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~-----~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s 194 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGA-----KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFS 194 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC-----CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEE
Confidence 5678999999999999887764311 146788877654310 01 2358999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
..+++|+ .++..++++++++|+|||.+++.+............+. .. +... ......++..++.++|+++|
T Consensus 195 ~gvL~H~--~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~-~r-----y~k~-~nv~flpS~~~L~~~L~~aG 265 (314)
T TIGR00452 195 MGVLYHR--KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK-DR-----YAKM-KNVYFIPSVSALKNWLEKVG 265 (314)
T ss_pred cchhhcc--CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch-HH-----HHhc-cccccCCCHHHHHHHHHHCC
Confidence 9999999 78999999999999999999997654332111000000 00 0000 00123468999999999999
Q ss_pred ceEEEEEEEeeee
Q 045799 208 FSTVDINIHLKQI 220 (231)
Q Consensus 208 f~~~~~~~~~~~~ 220 (231)
|+.+++.......
T Consensus 266 F~~V~i~~~~~tt 278 (314)
T TIGR00452 266 FENFRILDVLKTT 278 (314)
T ss_pred CeEEEEEeccCCC
Confidence 9999877655543
No 17
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.65 E-value=1.9e-15 Score=109.93 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=95.6
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEEE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVVT 126 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~ii 126 (231)
....|||||||||.+-.++- ...++.++++|.++.|.+. .+++.+||+|+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~-----~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYP-----WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred CccceEEecccCCCCccccc-----CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEE
Confidence 34578999999998774332 0235677788877665421 25789999999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+.++|+.+ +++.+.|+++.++|+|||++++.++............ .......|....+|... +. +.-+.|+++
T Consensus 151 ~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~-q~v~ep~~~~~~dGC~l---tr-d~~e~Leda 223 (252)
T KOG4300|consen 151 CTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRIL-QQVAEPLWHLESDGCVL---TR-DTGELLEDA 223 (252)
T ss_pred EEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHH-HHHhchhhheeccceEE---eh-hHHHHhhhc
Confidence 99999999 9999999999999999999999998887665433321 22333334444555554 34 566777888
Q ss_pred CceEEEEEEE
Q 045799 207 GFSTVDINIH 216 (231)
Q Consensus 207 Gf~~~~~~~~ 216 (231)
.|++.+.+..
T Consensus 224 ~f~~~~~kr~ 233 (252)
T KOG4300|consen 224 EFSIDSCKRF 233 (252)
T ss_pred ccccchhhcc
Confidence 8988876543
No 18
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.64 E-value=7.8e-16 Score=122.77 Aligned_cols=200 Identities=16% Similarity=0.184 Sum_probs=110.7
Q ss_pred chhhhhhhcCCCCcccCCCCcchhHHHhhHHHhhHHHHHHhcc--CCcccchhhh----HHhhcccccCCCCCCCCCCCe
Q 045799 2 ITTVQRRHRHSLPAAIQPQNYPLEEHYQSKAKKYWDGFYKRHK--NKFFKDRHYL----EKDWGNYFSDDSCCPNGNPKV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 75 (231)
+++.++|.+.+..+.....+...+..|+..+.+-|..+|..+. .....+..|- .+.+...+.. ....++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~---~~~~~~~~ 147 (315)
T PLN02585 71 LTDPERRRQLQAEEVGGDDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAE---DGSLAGVT 147 (315)
T ss_pred ccChHHHHhhhhhhhHHHHHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHh---cCCCCCCE
Confidence 4455666655444443333334455666655555666665432 1111111111 1111112211 00135689
Q ss_pred EEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEEEEeee
Q 045799 76 VLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVVTLIFM 130 (231)
Q Consensus 76 iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~ii~~~~ 130 (231)
|||||||+|.++..++.. +.+++++|+++.|+.. ...+++||+|++..+
T Consensus 148 VLDlGcGtG~~a~~la~~------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 148 VCDAGCGTGSLAIPLALE------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred EEEecCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 999999999999988843 3367788888765421 012478999999999
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
++|++++....+++.+.+ +.++|.+ +.. .+......... .+...+.........++++.+++.++|+++||++
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~g~li-Is~-~p~~~~~~~l~----~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAEKRLI-ISF-APKTLYYDILK----RIGELFPGPSKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcCCEEE-EEe-CCcchHHHHHH----HHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence 999976566677777775 4566554 432 22221111111 1111110001111234568999999999999999
Q ss_pred EEEEEEe
Q 045799 211 VDINIHL 217 (231)
Q Consensus 211 ~~~~~~~ 217 (231)
...+...
T Consensus 295 ~~~~~~~ 301 (315)
T PLN02585 295 ARREMTA 301 (315)
T ss_pred EEEEEee
Confidence 8766544
No 19
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.62 E-value=1.3e-14 Score=113.41 Aligned_cols=124 Identities=12% Similarity=0.176 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------CCCCCCCeeEEEEeeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------RNVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------~~~~~~~fD~ii~~~~l~ 132 (231)
.++.+|||+|||+|.++..++.. +.+++++|+++.++. .++++++||+|++..+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~ 114 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRER------GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQ 114 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhh
Confidence 35678999999999998887632 235667777665432 145678999999999999
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
++ .++..++.++.++|+|||.+++..+........... ...+. .......+++.+++..++...|++.
T Consensus 115 ~~--~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~--~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 115 WC--GNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQA--WQAVD------ERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred hc--CCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHH--HHHhc------cCCccccCCCHHHHHHHHHhCCcee
Confidence 99 789999999999999999999998776655432111 01111 1112245789999999999888765
No 20
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.62 E-value=2.3e-15 Score=113.21 Aligned_cols=119 Identities=20% Similarity=0.310 Sum_probs=85.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..|+.. +.+++++|+++.+++. ++ +++||+|++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~ 101 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAAN------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYDFILS 101 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcCEEEE
Confidence 45689999999999999999843 3366777777654321 22 367999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
..++||++++++..++++++++|+|||++++.+....+... . . ...++.++.+++.++++ |
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~--~-------~--------~~~~~~~~~~el~~~~~--~ 162 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP--C-------T--------VGFPFAFKEGELRRYYE--G 162 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC--C-------C--------CCCCCccCHHHHHHHhC--C
Confidence 99999997778899999999999999997665432221110 0 0 00123478899999996 8
Q ss_pred ceEEEEEE
Q 045799 208 FSTVDINI 215 (231)
Q Consensus 208 f~~~~~~~ 215 (231)
|+++....
T Consensus 163 ~~~~~~~~ 170 (197)
T PRK11207 163 WEMVKYNE 170 (197)
T ss_pred CeEEEeeC
Confidence 99988754
No 21
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.61 E-value=1.8e-15 Score=118.68 Aligned_cols=138 Identities=18% Similarity=0.240 Sum_probs=84.6
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEE
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVT 126 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii 126 (231)
...++.+|||||||.|.++..++... +++++++.+|..+... .+ +.+||.|+
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~-----g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~-~~~fD~Iv 132 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERY-----GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL-PGKFDRIV 132 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH-------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----S-SEEE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHc-----CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-CCCCCEEE
Confidence 46899999999999999999998331 3345555555443321 12 24999999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccc-cccccceEEeCCCeEEEeeCHHHHHHHHHH
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRN-QMIGDSFYVRGDGTCSFYFSEDFLSTLFLE 205 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 205 (231)
+..+++|+.+++...+++++.++|+|||++++......+.......... .-+....+ ..+ ...+..++...+++
T Consensus 133 Si~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiF--Pgg---~lps~~~~~~~~~~ 207 (273)
T PF02353_consen 133 SIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIF--PGG---YLPSLSEILRAAED 207 (273)
T ss_dssp EESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTS--TTS------BHHHHHHHHHH
T ss_pred EEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeC--CCC---CCCCHHHHHHHHhc
Confidence 9999999988889999999999999999999876666544322111000 00111111 111 23578889999999
Q ss_pred cCceEEEEEEEe
Q 045799 206 AGFSTVDINIHL 217 (231)
Q Consensus 206 ~Gf~~~~~~~~~ 217 (231)
+||++..+...+
T Consensus 208 ~~l~v~~~~~~~ 219 (273)
T PF02353_consen 208 AGLEVEDVENLG 219 (273)
T ss_dssp TT-EEEEEEE-H
T ss_pred CCEEEEEEEEcC
Confidence 999999876543
No 22
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=5.2e-16 Score=120.12 Aligned_cols=134 Identities=19% Similarity=0.175 Sum_probs=98.8
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEE
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTL 127 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~ 127 (231)
...+|++|||||||.|.++..++... +++++++++|..+... +...+.||-|++
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y-----~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvS 143 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEY-----GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVS 143 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHc-----CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeee
Confidence 45899999999999999999998443 4577888888776532 123456999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhh-hhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQV-KLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
..+++|+..+....+++.++++|+|||.+++.+...++.... ........+... + ...+..++.+...++
T Consensus 144 vgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPg------G---~lPs~~~i~~~~~~~ 214 (283)
T COG2230 144 VGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPG------G---ELPSISEILELASEA 214 (283)
T ss_pred hhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCC------C---cCCCHHHHHHHHHhc
Confidence 999999988889999999999999999999987766653321 000001111111 1 234678888989999
Q ss_pred CceEEEEEEE
Q 045799 207 GFSTVDINIH 216 (231)
Q Consensus 207 Gf~~~~~~~~ 216 (231)
||.+......
T Consensus 215 ~~~v~~~~~~ 224 (283)
T COG2230 215 GFVVLDVESL 224 (283)
T ss_pred CcEEehHhhh
Confidence 9999876543
No 23
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.61 E-value=6e-15 Score=118.46 Aligned_cols=128 Identities=18% Similarity=0.168 Sum_probs=90.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------CCCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------RNVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------~~~~~~~fD~ii~~~~ 130 (231)
.++.+|||||||+|..+..++.... ..+++++|.++.++. .++++++||+|++..+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~----~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~ 187 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcCh
Confidence 4578999999999998887764321 135566776655432 1456789999999999
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
++|+ .+...++++++++|+|||.+++.+...++...... ....+ ..+.+.+++.++|+++||+.
T Consensus 188 L~~~--~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~------~~~~~--------~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 188 IEYW--PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRF------FADVW--------MLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred hhhC--CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHH------hhhhh--------ccCCCHHHHHHHHHHCCCeE
Confidence 9999 67889999999999999999886543322111000 00001 12357899999999999999
Q ss_pred EEEEEEee
Q 045799 211 VDINIHLK 218 (231)
Q Consensus 211 ~~~~~~~~ 218 (231)
+++.....
T Consensus 252 V~i~~i~~ 259 (340)
T PLN02490 252 VKLKRIGP 259 (340)
T ss_pred EEEEEcCh
Confidence 98876443
No 24
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.61 E-value=1.2e-14 Score=109.05 Aligned_cols=141 Identities=21% Similarity=0.312 Sum_probs=101.3
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCcc--ccccceeeeeecCCccccc--------------------------CCCCCCC
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSE--FREERVNAFVCNVVNDDLS--------------------------RNVNPSS 121 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~--~~~~~~~~~~~D~~~~~~~--------------------------~~~~~~~ 121 (231)
..++.++||++||||..+..++.+.. +....-+++.+|+++.|+. .||++++
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 46679999999999999988874322 1223346788888887763 2889999
Q ss_pred eeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCch-hhhhhhc-----cccccccceE------EeCCCe
Q 045799 122 VDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDF-AQVKLLD-----RNQMIGDSFY------VRGDGT 189 (231)
Q Consensus 122 fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~-~~~~~~~-----~~~~~~~~~~------~~~~~~ 189 (231)
||...+.+.+..+ .++++.+++++|+|||||++.+.+++..+. ...++.. .-+.++.-.. ..-...
T Consensus 178 ~D~yTiafGIRN~--th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveS 255 (296)
T KOG1540|consen 178 FDAYTIAFGIRNV--THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVES 255 (296)
T ss_pred ceeEEEecceecC--CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhh
Confidence 9999999999999 889999999999999999999999888763 2111110 1111111100 000111
Q ss_pred EEEeeCHHHHHHHHHHcCceEEE
Q 045799 190 CSFYFSEDFLSTLFLEAGFSTVD 212 (231)
Q Consensus 190 ~~~~~~~~~l~~~l~~~Gf~~~~ 212 (231)
...+.+.+++..+.+++||....
T Consensus 256 I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 256 IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhcCCCHHHHHHHHHHcCCcccc
Confidence 23578889999999999999886
No 25
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.61 E-value=3.7e-15 Score=126.71 Aligned_cols=129 Identities=21% Similarity=0.304 Sum_probs=92.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~ 128 (231)
.++.+|||||||+|..+..++... +.+++++|+++.++. .++++++||+|++.
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~ 339 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF-----DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSR 339 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEEC
Confidence 567899999999999988887432 235677777644431 14566789999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
.+++|+ .++..++++++++|||||.+++.++........... ...+ ...+ ...++.+++.++++++||
T Consensus 340 ~~l~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~--~~~~------~~~g--~~~~~~~~~~~~l~~aGF 407 (475)
T PLN02336 340 DTILHI--QDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEF--AEYI------KQRG--YDLHDVQAYGQMLKDAGF 407 (475)
T ss_pred Cccccc--CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHH--HHHH------HhcC--CCCCCHHHHHHHHHHCCC
Confidence 999999 789999999999999999999987654322110000 0000 0001 124688999999999999
Q ss_pred eEEEEEEE
Q 045799 209 STVDINIH 216 (231)
Q Consensus 209 ~~~~~~~~ 216 (231)
+++.++..
T Consensus 408 ~~i~~~d~ 415 (475)
T PLN02336 408 DDVIAEDR 415 (475)
T ss_pred eeeeeecc
Confidence 99977643
No 26
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.59 E-value=4.3e-15 Score=113.82 Aligned_cols=178 Identities=16% Similarity=0.202 Sum_probs=108.7
Q ss_pred hhHHHhhHHHhhHHHHHHhcc--CCccc----chhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCcccc
Q 045799 24 LEEHYQSKAKKYWDGFYKRHK--NKFFK----DRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFR 97 (231)
Q Consensus 24 ~~~~~~~~~~~~w~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~ 97 (231)
.+..|+.....-|+.++..+. ..+.. ....+...+.+.+.. ...++.+|||+|||+|.++..++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~vLDiGcG~G~~~~~la~~---- 76 (219)
T TIGR02021 5 VRHYFDGTAFQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPK----DPLKGKRVLDAGCGTGLLSIELAKR---- 76 (219)
T ss_pred HHHHhCchhHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCEEEEEeCCCCHHHHHHHHC----
Confidence 355666666778999886533 11111 011122222222221 0246789999999999999988743
Q ss_pred ccceeeeeecCCcccccC-------------------C--CCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEE
Q 045799 98 EERVNAFVCNVVNDDLSR-------------------N--VNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYI 156 (231)
Q Consensus 98 ~~~~~~~~~D~~~~~~~~-------------------~--~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l 156 (231)
...++++|+++.++.. . ...++||+|++..+++|+++++...+++++.+.+++++++
T Consensus 77 --~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i 154 (219)
T TIGR02021 77 --GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIF 154 (219)
T ss_pred --CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 2356778877665421 0 0126899999999999997677889999999999877666
Q ss_pred EEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEee
Q 045799 157 LVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
.+....... ... . .+...+..........+++.+++.++++++||+++.......
T Consensus 155 ~~~~~~~~~-~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 209 (219)
T TIGR02021 155 TFAPKTAWL-AFL--K----MIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVST 209 (219)
T ss_pred EECCCchHH-HHH--H----HHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccc
Confidence 543211111 000 0 011111111112224568999999999999999998865543
No 27
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.59 E-value=1.2e-14 Score=112.31 Aligned_cols=177 Identities=16% Similarity=0.159 Sum_probs=106.0
Q ss_pred cchhHHHhhHHHhhHHHHHHhccCCcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccce
Q 045799 22 YPLEEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERV 101 (231)
Q Consensus 22 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~ 101 (231)
+.+...|++-+..||+.+.......-.. . .....+.... ...++.+|||||||+|.++..++.. ..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~------~~~~~~~vLdiG~G~G~~~~~l~~~------~~ 71 (233)
T PRK05134 6 PAEIAKFSALAARWWDPNGEFKPLHRIN-P-LRLNYIREHA------GGLFGKRVLDVGCGGGILSESMARL------GA 71 (233)
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHhh-H-HHHHHHHHhc------cCCCCCeEEEeCCCCCHHHHHHHHc------CC
Confidence 3556688888888997753111110000 0 0011111111 1256789999999999998877633 12
Q ss_pred eeeeecCCcccccC-----------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEE
Q 045799 102 NAFVCNVVNDDLSR-----------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 102 ~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
.++++|+++..+.. ...+++||+|++..+++|+ .++..+++.+.+.|+|||.+++
T Consensus 72 ~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~--~~~~~~l~~~~~~L~~gG~l~v 149 (233)
T PRK05134 72 DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV--PDPASFVRACAKLVKPGGLVFF 149 (233)
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc--CCHHHHHHHHHHHcCCCcEEEE
Confidence 34555554333210 1134789999999999999 7889999999999999999998
Q ss_pred EeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 159 CDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
..+.............. .....+.......+..+++.++|.++++++||++++...
T Consensus 150 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 150 STLNRNLKSYLLAIVGA-EYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDITG 205 (233)
T ss_pred EecCCChHHHHHHHhhH-HHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeeee
Confidence 76543221110000000 000000001112224578999999999999999998754
No 28
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.58 E-value=1.5e-15 Score=100.63 Aligned_cols=75 Identities=25% Similarity=0.381 Sum_probs=60.4
Q ss_pred EEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------CCCCCCCeeEEEEeeeeeccCC
Q 045799 77 LEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------RNVNPSSVDVVTLIFMLSAVSP 136 (231)
Q Consensus 77 LdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------~~~~~~~fD~ii~~~~l~~~~~ 136 (231)
||+|||+|..+..++.. ...+++++|++..++. .++++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~-----~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-----GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-----TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--
T ss_pred CEecCcCCHHHHHHHhc-----cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--
Confidence 89999999999999855 2446677777766432 27789999999999999999
Q ss_pred CCHHHHHHHHHHhcCCCeEEEE
Q 045799 137 KKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 137 ~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
+++..++++++|+|||||.+++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 8999999999999999999976
No 29
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.58 E-value=9.3e-15 Score=109.76 Aligned_cols=120 Identities=19% Similarity=0.282 Sum_probs=86.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|.++..++.. +.+++++|+++.++.. ++ +++||+|++.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~------g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~ 101 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLA------GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDFIFST 101 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCEEEEe
Confidence 34579999999999999999843 3466777777654421 11 3579999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
.+++|+++++...++++++++|+|||++++.++...+... .. ......++++++.+++. +|
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~-----~~------------~~~~~~~~~~el~~~f~--~~ 162 (195)
T TIGR00477 102 VVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYP-----CH------------MPFSFTFKEDELRQYYA--DW 162 (195)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCC-----CC------------CCcCccCCHHHHHHHhC--CC
Confidence 9999997677889999999999999997766443221100 00 00123578999999996 59
Q ss_pred eEEEEEEE
Q 045799 209 STVDINIH 216 (231)
Q Consensus 209 ~~~~~~~~ 216 (231)
+++.....
T Consensus 163 ~~~~~~e~ 170 (195)
T TIGR00477 163 ELLKYNEA 170 (195)
T ss_pred eEEEeecc
Confidence 99988743
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.58 E-value=5.9e-15 Score=114.90 Aligned_cols=140 Identities=15% Similarity=0.195 Sum_probs=90.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++.+|||||||+|..+..++..... .+.+++++|+++.|+.. .++...+|+|++.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~--~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~ 132 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHH--DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLN 132 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehh
Confidence 56789999999999998887642211 24577888888776532 1123469999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchh-hhh-hhcc------ccccccceEEe---CCCeEEEeeCHH
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFA-QVK-LLDR------NQMIGDSFYVR---GDGTCSFYFSED 197 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~-~~~-~~~~------~~~~~~~~~~~---~~~~~~~~~~~~ 197 (231)
.++||+++++...+++++++.|+|||.+++.+....... ... +... .......-... .-.......+.+
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~ 212 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVE 212 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHH
Confidence 999999766778999999999999999999874432211 000 0000 00000000000 000012236899
Q ss_pred HHHHHHHHcCceEEE
Q 045799 198 FLSTLFLEAGFSTVD 212 (231)
Q Consensus 198 ~l~~~l~~~Gf~~~~ 212 (231)
+..++|+++||+.++
T Consensus 213 ~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 213 THKARLHKAGFEHSE 227 (247)
T ss_pred HHHHHHHHcCchhHH
Confidence 999999999997643
No 31
>PRK05785 hypothetical protein; Provisional
Probab=99.58 E-value=5.2e-15 Score=113.46 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=64.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc---------------CCCCCCCeeEEEEeeeeeccC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------------RNVNPSSVDVVTLIFMLSAVS 135 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~---------------~~~~~~~fD~ii~~~~l~~~~ 135 (231)
.++.+|||||||||.++..++... +.+++++|+++.|+. .++++++||+|++.++++|+
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-----~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~- 123 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-----KYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHAS- 123 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-----CCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhcc-
Confidence 347899999999999998887432 236789999887754 26788999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCC
Q 045799 136 PKKMPLILQNIKAVLKPD 153 (231)
Q Consensus 136 ~~~~~~~l~~~~~~Lk~g 153 (231)
+++..++++++|+|||.
T Consensus 124 -~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 124 -DNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred -CCHHHHHHHHHHHhcCc
Confidence 78999999999999994
No 32
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.57 E-value=1.1e-14 Score=112.06 Aligned_cols=125 Identities=19% Similarity=0.305 Sum_probs=88.0
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEEEee
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVTLIF 129 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii~~~ 129 (231)
++|||||||+|.++..++.... ..++.++|+++.++. .++ .++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~----~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP----HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-PDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-CCCCCEeehHH
Confidence 3799999999999988874321 234455555543321 012 35899999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
+++|+ .+...++++++++|+|||.+++.++...... ... ......++.+..+|.++++++||+
T Consensus 76 ~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~------~~~~~~~~~s~~~~~~~l~~~Gf~ 138 (224)
T smart00828 76 VIHHI--KDKMDLFSNISRHLKDGGHLVLADFIANLLS---------AIE------HEETTSYLVTREEWAELLARNNLR 138 (224)
T ss_pred HHHhC--CCHHHHHHHHHHHcCCCCEEEEEEcccccCc---------ccc------ccccccccCCHHHHHHHHHHCCCe
Confidence 99999 7789999999999999999999876432110 000 000112357889999999999999
Q ss_pred EEEEEEEeeee
Q 045799 210 TVDINIHLKQI 220 (231)
Q Consensus 210 ~~~~~~~~~~~ 220 (231)
+++....+...
T Consensus 139 ~~~~~~~~~~~ 149 (224)
T smart00828 139 VVEGVDASLEI 149 (224)
T ss_pred EEEeEECcHhH
Confidence 99987765543
No 33
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.57 E-value=1.2e-14 Score=107.16 Aligned_cols=124 Identities=19% Similarity=0.362 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++.++||+|||.|+++.+|+.+ +..+..+|.+...++. .+ ++.||+|++.
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~------G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~-~~~yD~I~st 101 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ------GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF-PEEYDFIVST 101 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT------T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS--TTTEEEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccc-cCCcCEEEEE
Confidence 45689999999999999999944 3444455544433211 22 3689999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
.+++|++++....+++.+...++|||++++..+...+... . . ....+.+.+.++...+. ||
T Consensus 102 ~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p-----~--~----------~~~~f~~~~~EL~~~y~--dW 162 (192)
T PF03848_consen 102 VVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYP-----C--P----------SPFPFLLKPGELREYYA--DW 162 (192)
T ss_dssp SSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS---------S----------S--S--B-TTHHHHHTT--TS
T ss_pred EEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCC-----C--C----------CCCCcccCHHHHHHHhC--CC
Confidence 9999999889999999999999999999886543322110 0 0 00123467788999985 79
Q ss_pred eEEEEEEEeeee
Q 045799 209 STVDINIHLKQI 220 (231)
Q Consensus 209 ~~~~~~~~~~~~ 220 (231)
++++.....-.+
T Consensus 163 ~il~y~E~~g~~ 174 (192)
T PF03848_consen 163 EILKYNEDVGEL 174 (192)
T ss_dssp EEEEEEEEEEEE
T ss_pred eEEEEEccccce
Confidence 999875544333
No 34
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.57 E-value=3.8e-15 Score=115.56 Aligned_cols=140 Identities=17% Similarity=0.206 Sum_probs=91.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|..+..++.... ..+.+++++|+++.++.. .++...+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~--~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNIN--QPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcC--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeee
Confidence 4678999999999999988874322 124567888887666521 1123468999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhh-hh-hhcc------ccccccc-eEE--eCCCeEEEeeCHH
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQ-VK-LLDR------NQMIGDS-FYV--RGDGTCSFYFSED 197 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~-~~-~~~~------~~~~~~~-~~~--~~~~~~~~~~~~~ 197 (231)
+++||+++++...+++++++.|+|||.+++.+........ .. +... ....... ... ..-......++.+
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~ 209 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIE 209 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHH
Confidence 9999997667889999999999999999999854432111 00 0000 0000000 000 0000012347999
Q ss_pred HHHHHHHHcCceEEE
Q 045799 198 FLSTLFLEAGFSTVD 212 (231)
Q Consensus 198 ~l~~~l~~~Gf~~~~ 212 (231)
++..+++++||..++
T Consensus 210 ~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 210 THKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHHcCCchHH
Confidence 999999999998544
No 35
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.57 E-value=3.2e-15 Score=100.08 Aligned_cols=74 Identities=27% Similarity=0.466 Sum_probs=52.2
Q ss_pred EEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEEEEeeee
Q 045799 77 LEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVVTLIFML 131 (231)
Q Consensus 77 LdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~ii~~~~l 131 (231)
||||||+|.++..++... ...+++++|+++.++.. ....++||+|++.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~----~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL----PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-----EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhH
Confidence 799999999999998543 35688899999998842 1112599999999999
Q ss_pred eccCCCCHHHHHHHHHHhcCCCeEE
Q 045799 132 SAVSPKKMPLILQNIKAVLKPDGYI 156 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~gG~l 156 (231)
||+ +++..++++++++|+|||.+
T Consensus 77 ~~l--~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHL--EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S----S-HHHHHHHHTTT-TSS-EE
T ss_pred hhh--hhHHHHHHHHHHHcCCCCCC
Confidence 999 89999999999999999986
No 36
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.56 E-value=2.5e-14 Score=108.40 Aligned_cols=150 Identities=14% Similarity=0.151 Sum_probs=96.6
Q ss_pred hhHHHHHHhccCCcc-cchh-hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcc
Q 045799 34 KYWDGFYKRHKNKFF-KDRH-YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVND 111 (231)
Q Consensus 34 ~~w~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~ 111 (231)
+||+..|......+. ..++ .+...+..+. ..++.+|||+|||.|+.+.+|+.+ +.+++++|+++.
T Consensus 1 ~~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~-------~~~~~rvLd~GCG~G~da~~LA~~------G~~V~gvD~S~~ 67 (213)
T TIGR03840 1 EFWHERWQEGQIGFHQSEVNPLLVKHWPALG-------LPAGARVFVPLCGKSLDLAWLAEQ------GHRVLGVELSEI 67 (213)
T ss_pred ChHHHHHhcCCCCCccCCCCHHHHHHHHhhC-------CCCCCeEEEeCCCchhHHHHHHhC------CCeEEEEeCCHH
Confidence 379988866543321 2222 2222222211 146689999999999999999843 334455554433
Q ss_pred cccC-----------------------------------CC-CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeE
Q 045799 112 DLSR-----------------------------------NV-NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGY 155 (231)
Q Consensus 112 ~~~~-----------------------------------~~-~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~ 155 (231)
.++. +. ..+.||.|+...+++|++++.....++.+.++|||||+
T Consensus 68 Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 68 AVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR 147 (213)
T ss_pred HHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence 2110 00 13579999999999999988889999999999999998
Q ss_pred EEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEE
Q 045799 156 ILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 156 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
+++..+....... +.....++.+++.++|. .+|++..+...
T Consensus 148 ~ll~~~~~~~~~~-------------------~gpp~~~~~~eL~~~f~-~~~~i~~~~~~ 188 (213)
T TIGR03840 148 QLLITLDYDQSEM-------------------AGPPFSVSPAEVEALYG-GHYEIELLESR 188 (213)
T ss_pred EEEEEEEcCCCCC-------------------CCcCCCCCHHHHHHHhc-CCceEEEEeec
Confidence 7776554422110 00123478999999996 35777766543
No 37
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.56 E-value=1.5e-14 Score=111.70 Aligned_cols=177 Identities=14% Similarity=0.191 Sum_probs=103.0
Q ss_pred hHHHhhHHHhhHHHHHHhccCCccc-----chhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCcccccc
Q 045799 25 EEHYQSKAKKYWDGFYKRHKNKFFK-----DRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREE 99 (231)
Q Consensus 25 ~~~~~~~~~~~w~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~ 99 (231)
...|+..+.+.|+.+|....-.... ........+...+.. ....++.+|||||||+|.++..++..
T Consensus 14 ~~~~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~vLDvGcG~G~~~~~l~~~------ 84 (230)
T PRK07580 14 RTYFNRTGFDRWARIYSDAPVSKVRATVRAGHQRMRDTVLSWLPA---DGDLTGLRILDAGCGVGSLSIPLARR------ 84 (230)
T ss_pred hHHHhhhccchHHHhhCcCchhHHHHHhcchHHHHHHHHHHHHHh---cCCCCCCEEEEEeCCCCHHHHHHHHc------
Confidence 5677777778899887653211110 000111111111111 01256789999999999999888743
Q ss_pred ceeeeeecCCcccccC---------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEE
Q 045799 100 RVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 100 ~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
...+.++|+++.++.. +..+++||+|++..+++|++.++...+++.+.+.+++++++.+
T Consensus 85 ~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 85 GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 2246677766544311 1234789999999999999777788899999987754444332
Q ss_pred EeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEe
Q 045799 159 CDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
..... .... .. .+...+..........+++..++.++++++||++.++....
T Consensus 165 ~~~~~-~~~~--~~----~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 165 APYTP-LLAL--LH----WIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERIS 216 (230)
T ss_pred CCccH-HHHH--HH----HhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeecc
Confidence 21111 0000 00 01111100111122345789999999999999999987654
No 38
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.55 E-value=7.4e-14 Score=108.41 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=94.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc------------------------cCCCCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL------------------------SRNVNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~------------------------~~~~~~~~fD~i 125 (231)
...+++|||||||.|..+..++.... -.++++|.+..-. ..+. .+.||+|
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA-----~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtV 186 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGA-----KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTV 186 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCC-----CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEE
Confidence 35789999999999999988873311 1244555432211 0122 5799999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHH
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLE 205 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 205 (231)
++..||.|. .++...|.++++.|++||.+++.+..........+. ....|... ....+..+...+..+|+.
T Consensus 187 F~MGVLYHr--r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~------P~~rYa~m-~nv~FiPs~~~L~~wl~r 257 (315)
T PF08003_consen 187 FSMGVLYHR--RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLV------PEDRYAKM-RNVWFIPSVAALKNWLER 257 (315)
T ss_pred EEeeehhcc--CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEc------cCCcccCC-CceEEeCCHHHHHHHHHH
Confidence 999999999 899999999999999999999987666544332222 11112111 112334699999999999
Q ss_pred cCceEEEEEEEeeee
Q 045799 206 AGFSTVDINIHLKQI 220 (231)
Q Consensus 206 ~Gf~~~~~~~~~~~~ 220 (231)
+||+.+++-......
T Consensus 258 ~gF~~v~~v~~~~Tt 272 (315)
T PF08003_consen 258 AGFKDVRCVDVSPTT 272 (315)
T ss_pred cCCceEEEecCccCC
Confidence 999988876654433
No 39
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.54 E-value=6.2e-14 Score=110.89 Aligned_cols=135 Identities=19% Similarity=0.260 Sum_probs=89.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii 126 (231)
..++.+|||+|||+|..+..++.... ...+++++|+++.++. .++++++||+|+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g---~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVG---PTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC---CCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEE
Confidence 36789999999999987765542211 1124556666544332 145577999999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+..+++|. .+...+++++.++|||||.+++.++.............. .+ + .+.....++..++.++|+++
T Consensus 152 ~~~v~~~~--~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~-~~----~---~~~~~~~~~~~e~~~~l~~a 221 (272)
T PRK11873 152 SNCVINLS--PDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDA-EL----Y---AGCVAGALQEEEYLAMLAEA 221 (272)
T ss_pred EcCcccCC--CCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhH-HH----H---hccccCCCCHHHHHHHHHHC
Confidence 99999998 678899999999999999999987654321110000000 00 0 00112246788999999999
Q ss_pred CceEEEEEEEe
Q 045799 207 GFSTVDINIHL 217 (231)
Q Consensus 207 Gf~~~~~~~~~ 217 (231)
||..+++....
T Consensus 222 Gf~~v~i~~~~ 232 (272)
T PRK11873 222 GFVDITIQPKR 232 (272)
T ss_pred CCCceEEEecc
Confidence 99998875543
No 40
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.52 E-value=1.1e-13 Score=107.39 Aligned_cols=142 Identities=20% Similarity=0.286 Sum_probs=91.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++.... ...+++++|++..++. .+++.++||+|+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~---~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~ 126 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVG---KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVT 126 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcC---CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEE
Confidence 4568999999999999988874321 1234555555432210 123457899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhc----------cccccccce--EEeCCCeEEEee
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD----------RNQMIGDSF--YVRGDGTCSFYF 194 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~~~~~ 194 (231)
+..+++++ .+...+++++.++|+|||.+++.+...+......... ......... +.........++
T Consensus 127 ~~~~l~~~--~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (239)
T PRK00216 127 IAFGLRNV--PDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFP 204 (239)
T ss_pred EecccccC--CCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCC
Confidence 99999999 7899999999999999999998876554332100000 000000000 000000012356
Q ss_pred CHHHHHHHHHHcCceEEEEEEEe
Q 045799 195 SEDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 195 ~~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
+..++.++|+++||+++++....
T Consensus 205 ~~~~~~~~l~~aGf~~~~~~~~~ 227 (239)
T PRK00216 205 DQEELAAMLEEAGFERVRYRNLT 227 (239)
T ss_pred CHHHHHHHHHhCCCceeeeeeee
Confidence 88999999999999999887754
No 41
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.51 E-value=4.4e-14 Score=112.40 Aligned_cols=118 Identities=20% Similarity=0.325 Sum_probs=85.0
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEeeee
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIFML 131 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~~l 131 (231)
+.+|||+|||+|.++..++.. +.+++++|+++.++.. ...+++||+|++..++
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~------g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl 194 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL------GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVL 194 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchh
Confidence 459999999999999998743 3466777776654321 1125789999999999
Q ss_pred eccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEE
Q 045799 132 SAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTV 211 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 211 (231)
+|+++++...+++++.+.|+|||++++......+... . .......++..++.++++ +|+++
T Consensus 195 ~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~------~-----------~~p~~~~~~~~el~~~~~--~~~i~ 255 (287)
T PRK12335 195 MFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP------C-----------PMPFSFTFKEGELKDYYQ--DWEIV 255 (287)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC------C-----------CCCCCcccCHHHHHHHhC--CCEEE
Confidence 9997778899999999999999997765322211110 0 001124588999999996 49999
Q ss_pred EEEE
Q 045799 212 DINI 215 (231)
Q Consensus 212 ~~~~ 215 (231)
....
T Consensus 256 ~~~e 259 (287)
T PRK12335 256 KYNE 259 (287)
T ss_pred EEec
Confidence 8754
No 42
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.51 E-value=8e-14 Score=106.06 Aligned_cols=153 Identities=15% Similarity=0.176 Sum_probs=99.9
Q ss_pred HhhHHHHHHhccCCcc-cchh-hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCc
Q 045799 33 KKYWDGFYKRHKNKFF-KDRH-YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVN 110 (231)
Q Consensus 33 ~~~w~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~ 110 (231)
.++|+..|......+. ...+ .+.+.+..+. ..++.+|||+|||.|..+.+|+.+ +.+++++|+++
T Consensus 3 ~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~-------~~~~~rvL~~gCG~G~da~~LA~~------G~~V~avD~s~ 69 (218)
T PRK13255 3 PDFWHEKWAENQIGFHQEEVNPLLQKYWPALA-------LPAGSRVLVPLCGKSLDMLWLAEQ------GHEVLGVELSE 69 (218)
T ss_pred HhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhC-------CCCCCeEEEeCCCChHhHHHHHhC------CCeEEEEccCH
Confidence 3689998876553331 2222 3333322211 245689999999999999999854 44666666664
Q ss_pred ccccC-----------------------------------CC-CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCe
Q 045799 111 DDLSR-----------------------------------NV-NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDG 154 (231)
Q Consensus 111 ~~~~~-----------------------------------~~-~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG 154 (231)
..+.. .. ....||+|+...+++|++++.....++.+.++|+|||
T Consensus 70 ~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 70 LAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGC 149 (218)
T ss_pred HHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCC
Confidence 42210 00 1257999999999999998889999999999999999
Q ss_pred EEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEee
Q 045799 155 YILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 155 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
.+++..+...... . +..+..++.+++.+++. -+|++..+.....
T Consensus 150 ~~~l~~~~~~~~~----------~---------~gPp~~~~~~el~~~~~-~~~~i~~~~~~~~ 193 (218)
T PRK13255 150 RGLLVTLDYPQEE----------L---------AGPPFSVSDEEVEALYA-GCFEIELLERQDV 193 (218)
T ss_pred eEEEEEEEeCCcc----------C---------CCCCCCCCHHHHHHHhc-CCceEEEeeeccc
Confidence 7655433322111 0 00123479999999995 3488887765443
No 43
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.51 E-value=1.1e-13 Score=107.26 Aligned_cols=126 Identities=22% Similarity=0.382 Sum_probs=86.9
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-------------------cCCCCCCCeeEEEEeeeee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-------------------SRNVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-------------------~~~~~~~~fD~ii~~~~l~ 132 (231)
.+.+|||+|||+|.++..++.... ..+++++|++..++ ..++++++||+|++..+++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFP----QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCC----CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 347899999999999988874321 22344555443322 1144678999999999999
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEE
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVD 212 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 212 (231)
|+ .++..++.++.++|+|||.+++.++........... ... ....+++..++.+++.++ |..+.
T Consensus 110 ~~--~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~-----~~~--------~~~~~~~~~~~~~~l~~~-f~~~~ 173 (240)
T TIGR02072 110 WC--DDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQS-----FGQ--------HGLRYLSLDELKALLKNS-FELLT 173 (240)
T ss_pred hc--cCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHH-----HHH--------hccCCCCHHHHHHHHHHh-cCCcE
Confidence 99 789999999999999999999987666554321111 000 012356778888888877 77666
Q ss_pred EEEEe
Q 045799 213 INIHL 217 (231)
Q Consensus 213 ~~~~~ 217 (231)
+....
T Consensus 174 ~~~~~ 178 (240)
T TIGR02072 174 LEEEL 178 (240)
T ss_pred EEEEE
Confidence 55443
No 44
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.50 E-value=1.5e-13 Score=105.67 Aligned_cols=138 Identities=19% Similarity=0.211 Sum_probs=88.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCC-CCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNV-NPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~-~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++... ..++++|+++.++. .+. ..++||+|+
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~------~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLG------ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcC------CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEE
Confidence 347899999999999988776321 13455555432210 011 136899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+.++++|+ .++..+++.+.+.|+|||.+++.+............ ........+..........+++..++.++++++
T Consensus 118 ~~~~l~~~--~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 118 CMEVLEHV--PDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAI-VGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred ehhHHHhC--CCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHH-HhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 99999999 789999999999999999999876543211110000 000000000001111223467899999999999
Q ss_pred CceEEEEEEEe
Q 045799 207 GFSTVDINIHL 217 (231)
Q Consensus 207 Gf~~~~~~~~~ 217 (231)
||+++++....
T Consensus 195 G~~i~~~~~~~ 205 (224)
T TIGR01983 195 GLRVKDVKGLV 205 (224)
T ss_pred CCeeeeeeeEE
Confidence 99999887544
No 45
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.50 E-value=2.1e-13 Score=107.08 Aligned_cols=138 Identities=17% Similarity=0.138 Sum_probs=87.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------CCCCCCeeEEEEeeeeec
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------NVNPSSVDVVTLIFMLSA 133 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------~~~~~~fD~ii~~~~l~~ 133 (231)
.++.+|||||||+|.++..++.... ..+++++|+++.++.. ..++++||+|++..+++|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~----~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWP----AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEEEccChhh
Confidence 5678999999999999988874321 2356777777654421 123468999999999999
Q ss_pred cCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhh-hhhh--ccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 134 VSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQ-VKLL--DRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 134 ~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
+ .+...+++++.++|+|||.+++.......... .... .....+...+.... .....+.+...+.+++.++|+.+
T Consensus 106 ~--~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~v 182 (258)
T PRK01683 106 L--PDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRG-ARRAPLPPPHAYYDALAPAACRV 182 (258)
T ss_pred C--CCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhcccc-ccCcCCCCHHHHHHHHHhCCCce
Confidence 9 67899999999999999999886322211110 0000 00000111110001 01123467788999999999876
Q ss_pred EEEEE
Q 045799 211 VDINI 215 (231)
Q Consensus 211 ~~~~~ 215 (231)
.....
T Consensus 183 ~~~~~ 187 (258)
T PRK01683 183 DIWHT 187 (258)
T ss_pred eeeee
Confidence 44333
No 46
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.49 E-value=1.4e-13 Score=105.64 Aligned_cols=144 Identities=24% Similarity=0.345 Sum_probs=93.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc---------------------cCCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL---------------------SRNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~---------------------~~~~~~~~fD~ii~~~ 129 (231)
.++.+|||+|||+|..+..++.... ...+++++|+++..+ ..+++.++||+|++..
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~---~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~ 114 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAP---DRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAF 114 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcC---CCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEee
Confidence 4678999999999999988874321 012455555543221 1124457899999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh------hhccccccccceEEeCC-------CeEEEeeCH
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK------LLDRNQMIGDSFYVRGD-------GTCSFYFSE 196 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 196 (231)
+++++ .++..+++++.+.|+|||.+++.+...+...... .......... .+.... .....+++.
T Consensus 115 ~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 191 (223)
T TIGR01934 115 GLRNV--TDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGG-LISKNAEAYTYLPESIRAFPSQ 191 (223)
T ss_pred eeCCc--ccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhh-hhcCCchhhHHHHHHHHhCCCH
Confidence 99999 7899999999999999999999876544321000 0000000000 000000 001235788
Q ss_pred HHHHHHHHHcCceEEEEEEEeeee
Q 045799 197 DFLSTLFLEAGFSTVDINIHLKQI 220 (231)
Q Consensus 197 ~~l~~~l~~~Gf~~~~~~~~~~~~ 220 (231)
.+|..+|+++||+++.+......+
T Consensus 192 ~~~~~~l~~aGf~~~~~~~~~~~~ 215 (223)
T TIGR01934 192 EELAAMLKEAGFEEVRYRSLTFGV 215 (223)
T ss_pred HHHHHHHHHcCCccceeeeeecce
Confidence 999999999999999888776654
No 47
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.49 E-value=9.1e-14 Score=104.45 Aligned_cols=144 Identities=18% Similarity=0.202 Sum_probs=87.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------C-CCCCCCeeEEEEeeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------R-NVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------~-~~~~~~fD~ii~~~~l~ 132 (231)
+++.+|||+|||+|.++..++... ...++++|+++.++. . ++++++||+|++..+++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-----~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-----QVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-----CCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 456799999999999998876321 112344444432210 1 24567999999999999
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhh-hhhccccc-cccce-EEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQV-KLLDRNQM-IGDSF-YVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
|+ .++..+++++.+.+++ .++..+........ .+...... ..... +...+..+..+++.+++.++++++||+
T Consensus 87 ~~--~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~ 161 (194)
T TIGR02081 87 AT--RNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLR 161 (194)
T ss_pred cC--cCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCE
Confidence 99 7899999998887654 33332221111100 00000000 00000 000111223578999999999999999
Q ss_pred EEEEEEEeeeeeccc
Q 045799 210 TVDINIHLKQIKNRS 224 (231)
Q Consensus 210 ~~~~~~~~~~~~~~~ 224 (231)
+++.......-.+++
T Consensus 162 v~~~~~~~~~~~~~~ 176 (194)
T TIGR02081 162 ILDRAAFDVDGRGGR 176 (194)
T ss_pred EEEEEEecccccccc
Confidence 999888766666554
No 48
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.48 E-value=6.2e-13 Score=95.06 Aligned_cols=118 Identities=20% Similarity=0.310 Sum_probs=85.5
Q ss_pred CeEEEEcCCCCcchHHHhcCc------------------------cccccceeeeeecCCcccccCCCCCCCeeEEEEee
Q 045799 74 KVVLEVGCGAGNTIFPLVSHS------------------------EFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF 129 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~------------------------~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~ 129 (231)
.+|||+|||+|.+...|+... ..-...+.+.+.|+..+ .+..++||+|....
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~----~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP----DFLSGQFDLVLDKG 144 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC----cccccceeEEeecC
Confidence 399999999999999998221 00012256667777654 34568999999988
Q ss_pred eeeccC--CC----CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHH
Q 045799 130 MLSAVS--PK----KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLF 203 (231)
Q Consensus 130 ~l~~~~--~~----~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 203 (231)
++..++ ++ .+...+..+.++|+|||+++|. +|.+|..++.+.+
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt-------------------------------SCN~T~dELv~~f 193 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT-------------------------------SCNFTKDELVEEF 193 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEE-------------------------------ecCccHHHHHHHH
Confidence 887763 12 2345678899999999999986 3557899999999
Q ss_pred HHcCceEEEEEEEeeeeeccccc
Q 045799 204 LEAGFSTVDINIHLKQIKNRSQD 226 (231)
Q Consensus 204 ~~~Gf~~~~~~~~~~~~~~~~~~ 226 (231)
+..||++......+-..-+.+.+
T Consensus 194 ~~~~f~~~~tvp~ptF~FgG~~G 216 (227)
T KOG1271|consen 194 ENFNFEYLSTVPTPTFMFGGSVG 216 (227)
T ss_pred hcCCeEEEEeeccceEEeccccc
Confidence 99999888776666554444433
No 49
>PRK08317 hypothetical protein; Provisional
Probab=99.48 E-value=1.3e-13 Score=106.85 Aligned_cols=141 Identities=21% Similarity=0.173 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc----------------------cCCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL----------------------SRNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~----------------------~~~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|.++..++.... ...+++++|+++.++ ..++++++||+|++.
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~---~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 94 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVG---PEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSD 94 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcC---CCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEe
Confidence 6678999999999999988874321 122455666554321 113456799999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhc-cccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD-RNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
.+++|+ .++..+++++.++|+|||.+++.+............. ....+...+... ....+....+.++|+++|
T Consensus 95 ~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~aG 168 (241)
T PRK08317 95 RVLQHL--EDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDH----FADPWLGRRLPGLFREAG 168 (241)
T ss_pred chhhcc--CCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHcC
Confidence 999999 7899999999999999999998764321110000000 000000000000 011245578999999999
Q ss_pred ceEEEEEEEeeee
Q 045799 208 FSTVDINIHLKQI 220 (231)
Q Consensus 208 f~~~~~~~~~~~~ 220 (231)
|+.+.+.......
T Consensus 169 f~~~~~~~~~~~~ 181 (241)
T PRK08317 169 LTDIEVEPYTLIE 181 (241)
T ss_pred CCceeEEEEEEec
Confidence 9988877765443
No 50
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.47 E-value=5.1e-13 Score=99.27 Aligned_cols=126 Identities=18% Similarity=0.265 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCc-------------------cccc---cceeeeeecCCcccccCCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHS-------------------EFRE---ERVNAFVCNVVNDDLSRNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~-------------------~~~~---~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~ 128 (231)
....+.||+|+|-|+.+..++... .... ...+++++-+. .+ ..+..+||+|++-
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ--~f--~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQ--DF--TPEEGKYDLIWIQ 129 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GG--G------TT-EEEEEEE
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHh--hc--cCCCCcEeEEEeh
Confidence 456889999999999999887221 0000 11122222221 11 1124699999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
+++.|++++++..+|++++..|+|+|++++-+...... ...+...++...+ +.+.++++|++||+
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~-------------~~~~D~~DsSvTR--s~~~~~~lF~~AGl 194 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG-------------FDEFDEEDSSVTR--SDEHFRELFKQAGL 194 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS-------------EEEEETTTTEEEE--EHHHHHHHHHHCT-
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC-------------CcccCCccCeeec--CHHHHHHHHHHcCC
Confidence 99999999999999999999999999999976333211 1123345554444 78899999999999
Q ss_pred eEEEEEE
Q 045799 209 STVDINI 215 (231)
Q Consensus 209 ~~~~~~~ 215 (231)
+++..+.
T Consensus 195 ~~v~~~~ 201 (218)
T PF05891_consen 195 RLVKEEK 201 (218)
T ss_dssp EEEEEEE
T ss_pred EEEEecc
Confidence 9998654
No 51
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.47 E-value=1.8e-13 Score=116.48 Aligned_cols=129 Identities=20% Similarity=0.265 Sum_probs=88.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-----------------------cCCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-----------------------SRNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-----------------------~~~~~~~~fD~ii~ 127 (231)
.++.+|||||||+|.++..++... .+++++|+++.++ ..++++++||+|++
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~------~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~ 109 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA------GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFS 109 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC------CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEeh
Confidence 356799999999999999988331 1234444433322 12456789999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
..+++|+++++...++++++++|||||++++.+......... ... .+ ...+.....|.+++.++|
T Consensus 110 ~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~-----~~~--------~~--~~~~~~~~~~~~~f~~~~ 174 (475)
T PLN02336 110 NWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS-----KRK--------NN--PTHYREPRFYTKVFKECH 174 (475)
T ss_pred hhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc-----ccc--------CC--CCeecChHHHHHHHHHhe
Confidence 999999976668899999999999999999987543221100 000 01 122356789999999999
Q ss_pred ceEEEEEEEeeee
Q 045799 208 FSTVDINIHLKQI 220 (231)
Q Consensus 208 f~~~~~~~~~~~~ 220 (231)
|............
T Consensus 175 ~~~~~~~~~~~~~ 187 (475)
T PLN02336 175 TRDEDGNSFELSL 187 (475)
T ss_pred eccCCCCEEEEEE
Confidence 8877655444333
No 52
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.46 E-value=3.4e-13 Score=110.92 Aligned_cols=133 Identities=17% Similarity=0.167 Sum_probs=91.1
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------CC--CCCCeeEEEEeeeee
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------NV--NPSSVDVVTLIFMLS 132 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------~~--~~~~fD~ii~~~~l~ 132 (231)
..++.+|||||||+|.++..++... +++++++|+++.++.. .. .+++||+|++..+++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~-----g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~e 239 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY-----GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFE 239 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchh
Confidence 4678899999999999998887432 3467788887666531 01 146899999999999
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEE
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVD 212 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 212 (231)
|++..+...+++++.++|||||.+++.++........ ...+... +.... ..+.+..++...++ .||++.+
T Consensus 240 hvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~-----~~~~i~~-yifp~---g~lps~~~i~~~~~-~~~~v~d 309 (383)
T PRK11705 240 HVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTN-----VDPWINK-YIFPN---GCLPSVRQIAQASE-GLFVMED 309 (383)
T ss_pred hCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCC-----CCCCcee-eecCC---CcCCCHHHHHHHHH-CCcEEEE
Confidence 9977778899999999999999999987655432110 0001001 11111 12357778777765 6899888
Q ss_pred EEEEe
Q 045799 213 INIHL 217 (231)
Q Consensus 213 ~~~~~ 217 (231)
+...+
T Consensus 310 ~~~~~ 314 (383)
T PRK11705 310 WHNFG 314 (383)
T ss_pred EecCh
Confidence 76543
No 53
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.43 E-value=5.5e-13 Score=97.24 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=91.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc---------------cccceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF---------------REERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVS 135 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~---------------~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~ 135 (231)
.++.+|||+|||.|.+..+|...... -..++.++..|+..... .|++++||.||++.+|.++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~--~f~d~sFD~VIlsqtLQ~~- 88 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLA--DFPDQSFDYVILSQTLQAV- 88 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHh--hCCCCCccEEehHhHHHhH-
Confidence 78899999999999999888743211 12344455555544322 5789999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhh-hh-----hccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 136 PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQV-KL-----LDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 136 ~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
..+..+|+++.|+ |...+++-++....... .. .+....+...||...+ -++.|..+..+++.+.|++
T Consensus 89 -~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPN---ih~~Ti~DFe~lc~~~~i~ 161 (193)
T PF07021_consen 89 -RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPN---IHLCTIKDFEDLCRELGIR 161 (193)
T ss_pred -hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCC---cccccHHHHHHHHHHCCCE
Confidence 8899998888765 55566653333221110 00 1112234444543221 2468999999999999999
Q ss_pred EEEEEEEee
Q 045799 210 TVDINIHLK 218 (231)
Q Consensus 210 ~~~~~~~~~ 218 (231)
|++-.....
T Consensus 162 I~~~~~~~~ 170 (193)
T PF07021_consen 162 IEERVFLDG 170 (193)
T ss_pred EEEEEEEcC
Confidence 998665443
No 54
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.42 E-value=2.7e-13 Score=102.28 Aligned_cols=87 Identities=16% Similarity=0.260 Sum_probs=67.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------CCCCCCeeEEEEeeeeec
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------NVNPSSVDVVTLIFMLSA 133 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------~~~~~~fD~ii~~~~l~~ 133 (231)
.++.+|||||||+|..+..++.... ..+++++|+++.++.. ++++++||+|++.++++|
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~----~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLP----FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCC----CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhh
Confidence 5677899999999999988874321 2356777777655421 456789999999999999
Q ss_pred cCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 134 VSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 134 ~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+++++...+++++.+++ ++++++.++..
T Consensus 118 l~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 118 INPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred CCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 98778899999999987 46888877544
No 55
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.42 E-value=3e-13 Score=97.70 Aligned_cols=85 Identities=20% Similarity=0.395 Sum_probs=66.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhc-CccccccceeeeeecCCcccccC-----------------------C--CCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVS-HSEFREERVNAFVCNVVNDDLSR-----------------------N--VNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~-~~~~~~~~~~~~~~D~~~~~~~~-----------------------~--~~~~~fD~ 124 (231)
.++.+|||+|||+|.++..++. ... +.+++++|+++.++.. + ++ ++||+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~----~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~ 76 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNP----GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDI 76 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTT----TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCC----CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeE
Confidence 4678999999999999999883 111 3346666666655421 1 22 79999
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
|++..+++|+ .++..+++++.+.|+++|.+++.++.
T Consensus 77 I~~~~~l~~~--~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 77 IISNGVLHHF--PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEESTGGGT--SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEcCchhhc--cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999 78999999999999999999998776
No 56
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.40 E-value=3.2e-13 Score=92.33 Aligned_cols=85 Identities=20% Similarity=0.263 Sum_probs=61.6
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEEEE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVVTL 127 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ii~ 127 (231)
|+.+|||||||+|.++..++... .+.+++++|+++.++.. .-..++||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF----PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH----TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC----CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEE
Confidence 57899999999999999998411 13345566665544321 112357999999
Q ss_pred ee-eeeccC-CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 128 IF-MLSAVS-PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 128 ~~-~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.. +++++. .++...+++++.+.|+|||++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99 555442 2567899999999999999999864
No 57
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.40 E-value=1.4e-12 Score=96.71 Aligned_cols=126 Identities=17% Similarity=0.305 Sum_probs=94.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------CCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------NVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------~~~~~~fD~ii~~~~ 130 (231)
.+..++||+|||||.+...+..... ...++|+|..|+.. ....+.||+|++..|
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~------~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMAD------RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHh------hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 4468999999999999988864322 45789999888753 135689999999999
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
+.++ -++..++.-+...|+|||.+.++.-..++.. .+...... .+-++...++.+++..||++
T Consensus 198 l~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~-------------~f~l~ps~--RyAH~~~YVr~~l~~~Gl~~ 260 (287)
T COG4976 198 LPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDDG-------------GFVLGPSQ--RYAHSESYVRALLAASGLEV 260 (287)
T ss_pred HHhh--cchhhHHHHHHHhcCCCceEEEEecccCCCC-------------Ceecchhh--hhccchHHHHHHHHhcCceE
Confidence 9999 8899999999999999999999743332221 01111100 12357788999999999999
Q ss_pred EEEEEEeee
Q 045799 211 VDINIHLKQ 219 (231)
Q Consensus 211 ~~~~~~~~~ 219 (231)
++++..+..
T Consensus 261 i~~~~ttiR 269 (287)
T COG4976 261 IAIEDTTIR 269 (287)
T ss_pred EEeecccch
Confidence 998765543
No 58
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.40 E-value=1.5e-12 Score=104.67 Aligned_cols=133 Identities=14% Similarity=0.245 Sum_probs=83.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc-----------------------cccceeeeeecCCcccccCCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF-----------------------REERVNAFVCNVVNDDLSRNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~-----------------------~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~ 127 (231)
.+..+|||||||+|.++..++....- ...+++++..|.... +++ .+|+|++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~----~~~--~~D~v~~ 221 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE----SYP--EADAVLF 221 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCC----CCC--CCCEEEe
Confidence 56689999999999999988833210 001233333333221 222 4799999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccc-cccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQM-IGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
..++|+++++....+++++++.|+|||.+++.|+...+.....+...... ....+ ......+.+.+++.++|+++
T Consensus 222 ~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~~~ll~~a 297 (306)
T TIGR02716 222 CRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGM----PFSVLGFKEQARYKEILESL 297 (306)
T ss_pred EhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHccc----ccccccCCCHHHHHHHHHHc
Confidence 99999987666678999999999999999999865433221100000000 00000 00011234579999999999
Q ss_pred CceEEEE
Q 045799 207 GFSTVDI 213 (231)
Q Consensus 207 Gf~~~~~ 213 (231)
||+.+++
T Consensus 298 Gf~~v~~ 304 (306)
T TIGR02716 298 GYKDVTM 304 (306)
T ss_pred CCCeeEe
Confidence 9987764
No 59
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.38 E-value=3.2e-12 Score=102.34 Aligned_cols=127 Identities=14% Similarity=0.217 Sum_probs=80.7
Q ss_pred hHHHhhHHHhhHHHHHHhccCCccc-chhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceee
Q 045799 25 EEHYQSKAKKYWDGFYKRHKNKFFK-DRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNA 103 (231)
Q Consensus 25 ~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~ 103 (231)
+-.|+....+.|+.++....--... +...+......+.... +++.+|||+|||+|..+..|+.... ...++
T Consensus 20 ~~~yd~~G~~lf~~i~~~peYy~tr~E~~il~~~~~~ia~~~-----~~~~~iLELGcGtG~~t~~Ll~~l~---~~~~~ 91 (301)
T TIGR03438 20 KYFYDARGSELFEQICELPEYYPTRTEAAILERHADEIAAAT-----GAGCELVELGSGSSRKTRLLLDALR---QPARY 91 (301)
T ss_pred hhcccchHHHHHHHHHCCCccccHHHHHHHHHHHHHHHHHhh-----CCCCeEEecCCCcchhHHHHHHhhc---cCCeE
Confidence 5567777888888886522211111 1123333334444332 5668999999999999998874321 02456
Q ss_pred eeecCCcccccC-------------------------CCCCC----CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCe
Q 045799 104 FVCNVVNDDLSR-------------------------NVNPS----SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDG 154 (231)
Q Consensus 104 ~~~D~~~~~~~~-------------------------~~~~~----~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG 154 (231)
+++|++..|+.. +++.. ...++++..+++++++++...+++++++.|+|||
T Consensus 92 ~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG 171 (301)
T TIGR03438 92 VPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGG 171 (301)
T ss_pred EEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCC
Confidence 677777665311 11111 2334555567899988888999999999999999
Q ss_pred EEEEE
Q 045799 155 YILVC 159 (231)
Q Consensus 155 ~l~i~ 159 (231)
.+++.
T Consensus 172 ~~lig 176 (301)
T TIGR03438 172 GLLIG 176 (301)
T ss_pred EEEEe
Confidence 99874
No 60
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.37 E-value=9e-13 Score=97.48 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=95.6
Q ss_pred chhhhHHhhcccccCCCCCCCCCCC-eEEEEcCCCCcchHHHhcCc-------------------------cccccceee
Q 045799 50 DRHYLEKDWGNYFSDDSCCPNGNPK-VVLEVGCGAGNTIFPLVSHS-------------------------EFREERVNA 103 (231)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~-~iLdvGcG~G~~~~~l~~~~-------------------------~~~~~~~~~ 103 (231)
+...+.+.+.+++ .+.. +|||||||||..+.+++... ..+ .-..-
T Consensus 10 Nk~pIl~vL~~~l--------~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~-Nv~~P 80 (204)
T PF06080_consen 10 NKDPILEVLKQYL--------PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP-NVRPP 80 (204)
T ss_pred CHhHHHHHHHHHh--------CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc-ccCCC
Confidence 3445556665555 3334 69999999999999998210 000 01123
Q ss_pred eeecCCcccccC----CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhcc-cccc
Q 045799 104 FVCNVVNDDLSR----NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDR-NQMI 178 (231)
Q Consensus 104 ~~~D~~~~~~~~----~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~-~~~~ 178 (231)
+.+|++...... ++..++||+|++.+++|.+|.+..+.+++.+.++|++||.|++.-+...+-. ++.. ...+
T Consensus 81 ~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~---~ts~SN~~F 157 (204)
T PF06080_consen 81 LALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGK---FTSESNAAF 157 (204)
T ss_pred eEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCE---eCCcHHHHH
Confidence 456776553322 1245799999999999999988999999999999999999998632222111 0000 0001
Q ss_pred ccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 179 GDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
+.....+ +. .+-.-+.+++.++..++|++.++...
T Consensus 158 D~sLr~r-dp-~~GiRD~e~v~~lA~~~GL~l~~~~~ 192 (204)
T PF06080_consen 158 DASLRSR-DP-EWGIRDIEDVEALAAAHGLELEEDID 192 (204)
T ss_pred HHHHhcC-CC-CcCccCHHHHHHHHHHCCCccCcccc
Confidence 1111111 11 12346889999999999998876543
No 61
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.36 E-value=1.3e-12 Score=95.59 Aligned_cols=117 Identities=17% Similarity=0.217 Sum_probs=73.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc------------------cc-ccceeeeeecCCcccccCCCCCCCeeEEEEeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE------------------FR-EERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFML 131 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~------------------~~-~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l 131 (231)
..-.++||+|||.|.++..|+.... .. ..++.+...|+.. ..+.++||+|+++.++
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~-----~~P~~~FDLIV~SEVl 116 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPE-----FWPEGRFDLIVLSEVL 116 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT--------SS-EEEEEEES-G
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCC-----CCCCCCeeEEEEehHh
Confidence 4447899999999999999982210 00 1244455555532 3467899999999999
Q ss_pred eccCC-CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 132 SAVSP-KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 132 ~~~~~-~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
+|+.+ +++..++..+...|+|||.+++..+....- ..++ +-+-.+.+.++|.+. |..
T Consensus 117 YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c---------~~wg------------h~~ga~tv~~~~~~~-~~~ 174 (201)
T PF05401_consen 117 YYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANC---------RRWG------------HAAGAETVLEMLQEH-LTE 174 (201)
T ss_dssp GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH---------HHTT-------------S--HHHHHHHHHHH-SEE
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcc---------cccC------------cccchHHHHHHHHHH-hhh
Confidence 99964 568889999999999999999986532111 1111 124678899999876 555
Q ss_pred EEEE
Q 045799 211 VDIN 214 (231)
Q Consensus 211 ~~~~ 214 (231)
++-.
T Consensus 175 ~~~~ 178 (201)
T PF05401_consen 175 VERV 178 (201)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 4443
No 62
>PRK06922 hypothetical protein; Provisional
Probab=99.34 E-value=9.6e-13 Score=112.38 Aligned_cols=88 Identities=20% Similarity=0.286 Sum_probs=66.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CC--CCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RN--VNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~--~~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++... .+.+++++|+++.++. .+ +++++||+|+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~----P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEET----EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEE
Confidence 357899999999999888776432 1345667777655431 12 5678999999
Q ss_pred EeeeeeccC-----------CCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 127 LIFMLSAVS-----------PKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 127 ~~~~l~~~~-----------~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
++.++|++. .+++..++++++++|||||.+++.+..
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 999888652 246789999999999999999998753
No 63
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.33 E-value=1.4e-13 Score=92.48 Aligned_cols=78 Identities=22% Similarity=0.417 Sum_probs=57.8
Q ss_pred EEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEee-eee
Q 045799 76 VLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLIF-MLS 132 (231)
Q Consensus 76 iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~~-~l~ 132 (231)
|||+|||+|..+..++.... .....+++++|+++.++.. ++.+++||+|++.+ +++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~-~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFD-AGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhh-hcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 79999999999999984321 1113577888888877642 23567999999954 599
Q ss_pred ccCCCCHHHHHHHHHHhcCCCe
Q 045799 133 AVSPKKMPLILQNIKAVLKPDG 154 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG 154 (231)
|+++++...+++++.++|+|||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 9988889999999999999998
No 64
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.32 E-value=7.3e-12 Score=95.15 Aligned_cols=150 Identities=18% Similarity=0.288 Sum_probs=94.7
Q ss_pred HhhHHHHHHhccCCccc-chh-hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCc
Q 045799 33 KKYWDGFYKRHKNKFFK-DRH-YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVN 110 (231)
Q Consensus 33 ~~~w~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~ 110 (231)
.++|+..|......+.. ..+ .+.+.+.. + ...++.+||..|||.|....+|+.+ +.+++++|+++
T Consensus 3 ~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~-l------~~~~~~rvLvPgCG~g~D~~~La~~------G~~VvGvDls~ 69 (218)
T PF05724_consen 3 PEFWEERWQEGQTPWDQGEPNPALVEYLDS-L------ALKPGGRVLVPGCGKGYDMLWLAEQ------GHDVVGVDLSP 69 (218)
T ss_dssp HHHHHHHHHTT--TT--TTSTHHHHHHHHH-H------TTSTSEEEEETTTTTSCHHHHHHHT------TEEEEEEES-H
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHh-c------CCCCCCeEEEeCCCChHHHHHHHHC------CCeEEEEecCH
Confidence 47899888776644332 111 22333332 1 2366789999999999999999844 33445555544
Q ss_pred ccccC-----------------------------------CC-CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCe
Q 045799 111 DDLSR-----------------------------------NV-NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDG 154 (231)
Q Consensus 111 ~~~~~-----------------------------------~~-~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG 154 (231)
..+.. +. ..++||+|+....|+.+|++.+.+..+.+.++|+|||
T Consensus 70 ~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g 149 (218)
T PF05724_consen 70 TAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGG 149 (218)
T ss_dssp HHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEE
T ss_pred HHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCC
Confidence 33211 00 1147999999999999999999999999999999999
Q ss_pred EEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 155 YILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 155 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
.+++......... .-+ .++..+.+++.+++. .+|+++.+..
T Consensus 150 ~~lLi~l~~~~~~---------~~G----------PPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 150 RGLLITLEYPQGE---------MEG----------PPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp EEEEEEEES-CSC---------SSS----------SS----HHHHHHHHT-TTEEEEEEEE
T ss_pred cEEEEEEEcCCcC---------CCC----------cCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 9544432211100 001 122368899999998 7899999887
No 65
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.31 E-value=2.8e-11 Score=89.88 Aligned_cols=79 Identities=24% Similarity=0.323 Sum_probs=59.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~ 127 (231)
+++.+|||+|||+|..+..++.... ..+++++|.++.++.. +. +++||+|++
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~----~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~ 118 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARP----ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTS 118 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCC----CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEE
Confidence 4478999999999999988873211 3456677776554321 22 568999998
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.. + .++..+++.+++.|+|||++++..
T Consensus 119 ~~----~--~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 119 RA----V--ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred cc----c--cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 64 3 467889999999999999999863
No 66
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.28 E-value=1.6e-11 Score=93.15 Aligned_cols=155 Identities=14% Similarity=0.151 Sum_probs=98.4
Q ss_pred HHhhHHHHHHhccCCc-ccchh-hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCcc--------------
Q 045799 32 AKKYWDGFYKRHKNKF-FKDRH-YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSE-------------- 95 (231)
Q Consensus 32 ~~~~w~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~-------------- 95 (231)
..+||+..+......+ ....+ .+.+.+..+. ..++.+||..|||.|..+.+|+.+..
T Consensus 8 ~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~-------~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~ 80 (226)
T PRK13256 8 NNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLN-------INDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLS 80 (226)
T ss_pred CHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcC-------CCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHH
Confidence 3579999887766554 22222 3334443322 24568999999999999999994310
Q ss_pred -------------------ccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEE
Q 045799 96 -------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYI 156 (231)
Q Consensus 96 -------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l 156 (231)
+....+++.+.|+-..... .-..++||+|+...+|+++|++.+.+..+.+.++|+|||.+
T Consensus 81 ~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~-~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~l 159 (226)
T PRK13256 81 FFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI-ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQI 159 (226)
T ss_pred HHHHcCCCcceecccccceeccCceEEEEccCcCCCcc-ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEE
Confidence 1112333444444321100 00125899999999999999989999999999999999999
Q ss_pred EEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 157 LVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
++..+..... .+..++..+.+++.+++.. +|++..+..
T Consensus 160 lll~~~~~~~--------------------~~GPPf~v~~~e~~~lf~~-~~~i~~l~~ 197 (226)
T PRK13256 160 LLLVMEHDKK--------------------SQTPPYSVTQAELIKNFSA-KIKFELIDS 197 (226)
T ss_pred EEEEEecCCC--------------------CCCCCCcCCHHHHHHhccC-CceEEEeee
Confidence 8875422110 0111223578899999964 466665543
No 67
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.27 E-value=5.6e-11 Score=87.63 Aligned_cols=110 Identities=16% Similarity=0.301 Sum_probs=69.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcC-----ccccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHH
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSH-----SEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQN 145 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~ 145 (231)
++...|-|+|||.+.++..+... ......+-.++.+|++ ..|+++++.|++|+...|-- .+...++.+
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~Vtacdia----~vPL~~~svDv~VfcLSLMG---Tn~~~fi~E 143 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPRVTACDIA----NVPLEDESVDVAVFCLSLMG---TNWPDFIRE 143 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTTEEES-TT----S-S--TT-EEEEEEES---S---S-HHHHHHH
T ss_pred CCCEEEEECCCchHHHHHhcccCceEEEeeccCCCCCEEEecCc----cCcCCCCceeEEEEEhhhhC---CCcHHHHHH
Confidence 55679999999999999766422 1111233356778875 33678999999998665532 688999999
Q ss_pred HHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 146 IKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 146 ~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
+.|+||+||.+.|.+... ++-+.+...+.++..||++...+.
T Consensus 144 A~RvLK~~G~L~IAEV~S----------------------------Rf~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 144 ANRVLKPGGILKIAEVKS----------------------------RFENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp HHHHEEEEEEEEEEEEGG----------------------------G-S-HHHHHHHHHCTTEEEEEEE-
T ss_pred HHheeccCcEEEEEEecc----------------------------cCcCHHHHHHHHHHCCCeEEeccc
Confidence 999999999999986332 123567888999999999988653
No 68
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.26 E-value=6.2e-12 Score=98.67 Aligned_cols=89 Identities=19% Similarity=0.336 Sum_probs=65.5
Q ss_pred CCCCeEEEEcCCCCcchHHH----hcCcc-ccccceeeeeecCCcccccC------------------------------
Q 045799 71 GNPKVVLEVGCGAGNTIFPL----VSHSE-FREERVNAFVCNVVNDDLSR------------------------------ 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l----~~~~~-~~~~~~~~~~~D~~~~~~~~------------------------------ 115 (231)
.++.+|+|+|||||.-+..+ +.... ......+++++|+++.++..
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 34679999999999853333 22111 01124567888888766530
Q ss_pred --------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 116 --------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 116 --------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+++.++||+|+|.++++|+++++...+++++++.|+|||++++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 23467899999999999997667789999999999999999985
No 69
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.26 E-value=7e-11 Score=87.64 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=78.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------CCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------NVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------~~~~~~fD~ii~~~~ 130 (231)
.++.+|||+|||+|.++..++... .+++++|+++.++.. ....++||+|+++..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p 91 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG------KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPP 91 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC------CEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCC
Confidence 345789999999999998887431 145666666554321 112468999999887
Q ss_pred eeccCCC-------------------CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEE
Q 045799 131 LSAVSPK-------------------KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCS 191 (231)
Q Consensus 131 l~~~~~~-------------------~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (231)
+++.+.. -...+++++.++|+|||.+++.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~---------------------------- 143 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL---------------------------- 143 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc----------------------------
Confidence 7666321 04578999999999999998864221
Q ss_pred EeeCHHHHHHHHHHcCceEEEEEEEee
Q 045799 192 FYFSEDFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 192 ~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
-...++.+.+++.||+.+.+...+-
T Consensus 144 --~~~~~~~~~l~~~gf~~~~~~~~~~ 168 (179)
T TIGR00537 144 --NGEPDTFDKLDERGFRYEIVAERGL 168 (179)
T ss_pred --CChHHHHHHHHhCCCeEEEEEEeec
Confidence 1246889999999998888765443
No 70
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.24 E-value=6.9e-11 Score=87.54 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------C-CCCCCeeEEEEee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------N-VNPSSVDVVTLIF 129 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~-~~~~~fD~ii~~~ 129 (231)
++.+|||+|||+|..+..++.... ..+++++|.++.++.. . ...++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~----~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP----ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC----CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh
Confidence 378999999999999988762211 2245566665543210 1 1247899999865
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+ .+...+++.++++|+|||.+++.
T Consensus 118 -~-----~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 118 -L-----ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -h-----hCHHHHHHHHHHhcCCCCEEEEE
Confidence 3 34567889999999999999886
No 71
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.21 E-value=1.2e-10 Score=87.04 Aligned_cols=106 Identities=16% Similarity=0.133 Sum_probs=71.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~ 129 (231)
.++.+|||+|||+|.++..++... . ..+++++|+++.++.. ....++||+|++..
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~--~--~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~ 105 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQF--P--SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGG 105 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHC--C--CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECC
Confidence 567899999999999998887321 1 2344555555443211 01135799999876
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
..+ ....++..+.+.|+|||++++..... -+..++.+++++.||.
T Consensus 106 ~~~-----~~~~~l~~~~~~Lk~gG~lv~~~~~~------------------------------~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 106 SGG-----NLTAIIDWSLAHLHPGGRLVLTFILL------------------------------ENLHSALAHLEKCGVS 150 (187)
T ss_pred Ccc-----CHHHHHHHHHHhcCCCeEEEEEEecH------------------------------hhHHHHHHHHHHCCCC
Confidence 543 35678999999999999998853211 2346788899999987
Q ss_pred EEEEEE
Q 045799 210 TVDINI 215 (231)
Q Consensus 210 ~~~~~~ 215 (231)
.+++..
T Consensus 151 ~~~~~~ 156 (187)
T PRK08287 151 ELDCVQ 156 (187)
T ss_pred cceEEE
Confidence 665533
No 72
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.18 E-value=1.2e-10 Score=90.84 Aligned_cols=105 Identities=18% Similarity=0.289 Sum_probs=75.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------CCCC--CCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------NVNP--SSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------~~~~--~~fD~ii~~~~l~~~ 134 (231)
.++.+|||+|||+|.++..++... . ..++++|+++.++.. .+.. .+||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g---~--~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~--- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG---A--KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILA--- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC---C--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcH---
Confidence 578899999999998887665321 1 146888988776532 1112 279999986432
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEE
Q 045799 135 SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
+....++.++.+.|||||.++++.... ...+++.+.+++.||+++...
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~------------------------------~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILE------------------------------EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcH------------------------------hhHHHHHHHHHHCCCEEEEEE
Confidence 335678999999999999999873221 134678899999999988764
Q ss_pred E
Q 045799 215 I 215 (231)
Q Consensus 215 ~ 215 (231)
.
T Consensus 238 ~ 238 (250)
T PRK00517 238 E 238 (250)
T ss_pred E
Confidence 4
No 73
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.17 E-value=1.1e-10 Score=89.02 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=84.1
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------CCCCCCeeEEEEeeeeeccCCC
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------NVNPSSVDVVTLIFMLSAVSPK 137 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------~~~~~~fD~ii~~~~l~~~~~~ 137 (231)
...++||||+|.|..+..++.... ++...++|..|... .-.+.+||+|.|.++|... +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~------~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc--~ 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK------EVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRC--D 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc------eEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhcc--C
Confidence 567899999999999999984322 23334444433211 1135689999999999999 8
Q ss_pred CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhc-cccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEE
Q 045799 138 KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD-RNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 138 ~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
++..+|+.+++.|+|+|+++++-..+....-. ... ......+.....+ . ..--....+.+.|+.+||+++.....
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE-~~~g~~~~P~e~l~~~g-~--~~E~~v~~l~~v~~p~GF~v~~~tr~ 241 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAVVLPFRPYVE-FGGGKSNRPSELLPVKG-A--TFEEQVSSLVNVFEPAGFEVERWTRL 241 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEEecccccEE-cCCCCCCCchhhcCCCC-C--cHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 99999999999999999999875333211100 000 0001111111101 0 00011233458999999999998766
Q ss_pred eee
Q 045799 217 LKQ 219 (231)
Q Consensus 217 ~~~ 219 (231)
+..
T Consensus 242 PYL 244 (265)
T PF05219_consen 242 PYL 244 (265)
T ss_pred Ccc
Confidence 543
No 74
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=99.16 E-value=1.1e-10 Score=90.10 Aligned_cols=96 Identities=26% Similarity=0.498 Sum_probs=65.9
Q ss_pred eeeecCCcccccCC-C-CCCCeeEEEEeeeeeccC--CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhcccccc
Q 045799 103 AFVCNVVNDDLSRN-V-NPSSVDVVTLIFMLSAVS--PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMI 178 (231)
Q Consensus 103 ~~~~D~~~~~~~~~-~-~~~~fD~ii~~~~l~~~~--~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~ 178 (231)
++-+|+.+...-.+ . ...+||+|++.++++.+. .++....++++.++|||||.|++... +
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~----------------l 201 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV----------------L 201 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE----------------S
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE----------------c
Confidence 56788876554332 1 123699999999999874 45778899999999999999998743 2
Q ss_pred ccceEEeCCCeEE-EeeCHHHHHHHHHHcCceEEEEE
Q 045799 179 GDSFYVRGDGTCS-FYFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 179 ~~~~~~~~~~~~~-~~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
...+|..+...++ ..++.+.+++.++++||++++.+
T Consensus 202 ~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 202 GSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp S-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred CceeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 2334443433333 46899999999999999999987
No 75
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.15 E-value=2.6e-10 Score=86.45 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=61.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCc----------------cc-c---cCCCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVN----------------DD-L---SRNVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~----------------~~-~---~~~~~~~~fD~ii~~~~ 130 (231)
.++.+|||||||+|.++..++.... ....++++|+++ .. + ..++.+++||+|++..+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~---~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIG---DKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcC---CCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 6678999999999999988874321 112445555543 11 0 01245678999999776
Q ss_pred eeccCCC--C-------HHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 131 LSAVSPK--K-------MPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 131 l~~~~~~--~-------~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
.++.... + ...+++.+.++|+|||.+++..+...+
T Consensus 127 ~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 127 PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 6554211 1 146899999999999999997655544
No 76
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.15 E-value=1.2e-10 Score=87.95 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------------CCCCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------------RNVNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------------~~~~~~~fD~ 124 (231)
.++.+|||+|||+|..+..++.... ..+++++|+++.++. ..+++++||+
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p----~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANP----DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCC----CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccce
Confidence 3568999999999999998873211 123455555443321 1145678999
Q ss_pred EEEeeeeeccC------CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 125 VTLIFMLSAVS------PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 125 ii~~~~l~~~~------~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|++.+...+.. ......+++++.++|+|||.+++..
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 99876443221 1125789999999999999999863
No 77
>PRK04266 fibrillarin; Provisional
Probab=99.14 E-value=4.3e-10 Score=86.06 Aligned_cols=116 Identities=21% Similarity=0.255 Sum_probs=72.4
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDV 124 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~ 124 (231)
..++.+|||+|||+|.++..++.... .-.++++|+++.|+.. ++ .++||+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~----~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~ 144 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE----EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDV 144 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC----CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCE
Confidence 46788999999999999988874321 1145666666543220 11 246888
Q ss_pred EEEeeeeeccC-CCCHHHHHHHHHHhcCCCeEEEEEeccCC-chhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHH
Q 045799 125 VTLIFMLSAVS-PKKMPLILQNIKAVLKPDGYILVCDYAIG-DFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTL 202 (231)
Q Consensus 125 ii~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (231)
|++ +++ +.....+++++++.|||||.+++.-.... +.. . .. .. .. ++..++
T Consensus 145 i~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~-------~-----------~~--~~-~~-~~~~~~ 197 (226)
T PRK04266 145 IYQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVT-------K-----------DP--KE-IF-KEEIRK 197 (226)
T ss_pred EEE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCc-------C-----------CH--HH-HH-HHHHHH
Confidence 874 332 12334568999999999999998522110 000 0 00 00 11 345699
Q ss_pred HHHcCceEEEEEEEe
Q 045799 203 FLEAGFSTVDINIHL 217 (231)
Q Consensus 203 l~~~Gf~~~~~~~~~ 217 (231)
++++||++++.....
T Consensus 198 l~~aGF~~i~~~~l~ 212 (226)
T PRK04266 198 LEEGGFEILEVVDLE 212 (226)
T ss_pred HHHcCCeEEEEEcCC
Confidence 999999999876653
No 78
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.12 E-value=1.3e-10 Score=91.86 Aligned_cols=86 Identities=16% Similarity=0.311 Sum_probs=61.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------CCCCCCCeeEEEEeeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------RNVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------~~~~~~~fD~ii~~~~l~ 132 (231)
.+..+|||+|||+|.++..++..... .....++++|+++.++. .++++++||+|++.+.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~-- 160 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPE-ITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA-- 160 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhccc-ccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC--
Confidence 34578999999999999888743211 11235688888766542 2567889999998653
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCch
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDF 166 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~ 166 (231)
+ ..+++++|+|||||++++..++....
T Consensus 161 --~-----~~~~e~~rvLkpgG~li~~~p~~~~l 187 (272)
T PRK11088 161 --P-----CKAEELARVVKPGGIVITVTPGPRHL 187 (272)
T ss_pred --C-----CCHHHHHhhccCCCEEEEEeCCCcch
Confidence 1 13578999999999999987665443
No 79
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.09 E-value=2.1e-10 Score=84.52 Aligned_cols=136 Identities=18% Similarity=0.150 Sum_probs=89.6
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------CCCCCCeeEEEEeeeee
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------NVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------~~~~~~fD~ii~~~~l~ 132 (231)
..+..+|.|+|||+|..+..|+ .++... .+.++|-|.+|++. .-+....|+++++.+|+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~--~RwP~A--~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfaNAvlq 103 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLA--RRWPDA--VITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFANAVLQ 103 (257)
T ss_pred ccccceeeecCCCCCHHHHHHH--HhCCCC--eEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhhhhhhh
Confidence 3567899999999999998888 444433 55788998888753 22557899999999999
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhcc-c--cccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDR-N--QMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
++ ++-..++.++...|.|||++.+--+..-+......... . ..+...+-...- ......++....++|...+-+
T Consensus 104 Wl--pdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~-~r~~v~s~a~Yy~lLa~~~~r 180 (257)
T COG4106 104 WL--PDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGL-TRAPLPSPAAYYELLAPLACR 180 (257)
T ss_pred hc--cccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCcccc-ccCCCCCHHHHHHHhCcccce
Confidence 99 77889999999999999999886433322222111100 0 001111100000 123456788888888776554
Q ss_pred EEE
Q 045799 210 TVD 212 (231)
Q Consensus 210 ~~~ 212 (231)
+--
T Consensus 181 vDi 183 (257)
T COG4106 181 VDI 183 (257)
T ss_pred eee
Confidence 443
No 80
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.09 E-value=3.4e-10 Score=82.31 Aligned_cols=110 Identities=20% Similarity=0.260 Sum_probs=74.8
Q ss_pred ceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhc----cc
Q 045799 100 RVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD----RN 175 (231)
Q Consensus 100 ~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~----~~ 175 (231)
+++++..|... .++++++||+|++.++++++ +++..++++++++|||||.+++.++..++........ ..
T Consensus 27 ~i~~~~~d~~~----lp~~~~~fD~v~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~ 100 (160)
T PLN02232 27 CIEWIEGDAID----LPFDDCEFDAVTMGYGLRNV--VDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDN 100 (160)
T ss_pred ceEEEEechhh----CCCCCCCeeEEEecchhhcC--CCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccc
Confidence 46777788753 25678899999999999999 7899999999999999999999998775432111000 00
Q ss_pred ccc-ccceEEe-CC-----CeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 176 QMI-GDSFYVR-GD-----GTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 176 ~~~-~~~~~~~-~~-----~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
... ....... .. .....+++.+++.++|+++||+.+....
T Consensus 101 ~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~ 147 (160)
T PLN02232 101 VVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYE 147 (160)
T ss_pred hHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEE
Confidence 000 0000000 00 0002367999999999999999886544
No 81
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.09 E-value=7e-10 Score=83.90 Aligned_cols=111 Identities=15% Similarity=0.310 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcC---ccccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHH
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSH---SEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIK 147 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~---~~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~ 147 (231)
+....|-|+|||.+.++..-... ......+-.++.||+.. .|+++++.|++|+...| +. .++..++.++.
T Consensus 179 ~~~~vIaD~GCGEakiA~~~~~kV~SfDL~a~~~~V~~cDm~~----vPl~d~svDvaV~CLSL--Mg-tn~~df~kEa~ 251 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASSERHKVHSFDLVAVNERVIACDMRN----VPLEDESVDVAVFCLSL--MG-TNLADFIKEAN 251 (325)
T ss_pred cCceEEEecccchhhhhhccccceeeeeeecCCCceeeccccC----CcCccCcccEEEeeHhh--hc-ccHHHHHHHHH
Confidence 56678999999999887532211 11122344567777764 47789999999885543 22 68899999999
Q ss_pred HhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEE
Q 045799 148 AVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 148 ~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
|+|++||.++|.+... ++-+...+.+.|...||++....+.
T Consensus 252 RiLk~gG~l~IAEv~S----------------------------Rf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 252 RILKPGGLLYIAEVKS----------------------------RFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred HHhccCceEEEEehhh----------------------------hcccHHHHHHHHHHcCCeeeehhhh
Confidence 9999999999985322 2346778899999999998876543
No 82
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.09 E-value=4.5e-10 Score=87.76 Aligned_cols=108 Identities=21% Similarity=0.361 Sum_probs=70.9
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLIF 129 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~~ 129 (231)
.+.+|||+|||+|.++..++.... ..+++++|+++.++. .++++++||+|+++-
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~----~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP----DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECC
Confidence 456899999999999998883311 224445554433321 134567899999843
Q ss_pred ee------eccCCC------------------CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEe
Q 045799 130 ML------SAVSPK------------------KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVR 185 (231)
Q Consensus 130 ~l------~~~~~~------------------~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (231)
.. +.+..+ ....+++.+.++|+|||.+++..
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~------------------------- 217 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI------------------------- 217 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-------------------------
Confidence 22 112111 12467899999999999998841
Q ss_pred CCCeEEEeeCHHHHHHHHHHcCceEEEEE
Q 045799 186 GDGTCSFYFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 186 ~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
.+...+++.++|+++||+.+++.
T Consensus 218 ------~~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 218 ------GYDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred ------CccHHHHHHHHHHhCCCCceEEE
Confidence 01245688999999999877653
No 83
>PRK14968 putative methyltransferase; Provisional
Probab=99.07 E-value=1.1e-09 Score=81.71 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=72.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++.. +.+++++|+++.++.. ++.+++||+|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN------GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVIL 95 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh------cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEE
Confidence 45679999999999999888743 2244555555433211 22344799999
Q ss_pred EeeeeeccC-------------------CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCC
Q 045799 127 LIFMLSAVS-------------------PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGD 187 (231)
Q Consensus 127 ~~~~l~~~~-------------------~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (231)
+...+.... ......+++++.+.|+|||.+++....
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~------------------------- 150 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS------------------------- 150 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc-------------------------
Confidence 865432210 112466899999999999998875211
Q ss_pred CeEEEeeCHHHHHHHHHHcCceEEEEE
Q 045799 188 GTCSFYFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 188 ~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
....+++.+++.++||++..+.
T Consensus 151 -----~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 151 -----LTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred -----cCCHHHHHHHHHHCCCeeeeee
Confidence 1245678999999999887654
No 84
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.07 E-value=5.3e-10 Score=89.00 Aligned_cols=80 Identities=15% Similarity=0.299 Sum_probs=57.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|.++..++... ..+++++|+++.++.. ...+++||+|+++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-----~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan 232 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-----AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVAN 232 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-----CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEe
Confidence 467899999999999987776321 1255677776544311 2235689999997
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
...+ ....++.++.++|+|||.++++.
T Consensus 233 ~~~~-----~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 233 ILAE-----VIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred cCHH-----HHHHHHHHHHHHcCCCcEEEEEe
Confidence 6433 35678999999999999999874
No 85
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.06 E-value=1.4e-09 Score=87.55 Aligned_cols=150 Identities=21% Similarity=0.362 Sum_probs=84.2
Q ss_pred CCCeEEEEcCCCCcchHHHhcC-------------------ccc---------cc----cceeeeeecCCcccccCCCCC
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSH-------------------SEF---------RE----ERVNAFVCNVVNDDLSRNVNP 119 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~-------------------~~~---------~~----~~~~~~~~D~~~~~~~~~~~~ 119 (231)
++.+|||+|||-|..+..+... .+| .. -...++..|.....+...+.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 7899999999999988877621 011 00 011223333333332223344
Q ss_pred --CCeeEEEEeeeeecc--CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhh-hhh---hccccc--------------
Q 045799 120 --SSVDVVTLIFMLSAV--SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQ-VKL---LDRNQM-------------- 177 (231)
Q Consensus 120 --~~fD~ii~~~~l~~~--~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~-~~~---~~~~~~-------------- 177 (231)
.+||+|-|-+.|||. +++....+|+.+.+.|+|||+++...+....... ..- ......
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~ 221 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSDD 221 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCCS
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEecccC
Confidence 499999999999987 3445567999999999999999987544432210 000 000001
Q ss_pred ----cccc--eEEe--CCCeEEEeeCHHHHHHHHHHcCceEEEEEEEeeeee
Q 045799 178 ----IGDS--FYVR--GDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIK 221 (231)
Q Consensus 178 ----~~~~--~~~~--~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ 221 (231)
++.. ++.. -+....+....+.+.+++++.||+++....+.....
T Consensus 222 ~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~ef~~ 273 (331)
T PF03291_consen 222 FFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHEFYE 273 (331)
T ss_dssp S--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHHHHH
T ss_pred CCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHHHHH
Confidence 1111 1111 123344667789999999999999998765544433
No 86
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=5.7e-11 Score=88.21 Aligned_cols=137 Identities=16% Similarity=0.190 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc---------------------cCCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL---------------------SRNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~---------------------~~~~~~~~fD~ii~~~ 129 (231)
+....++|||||-|....++.... .-+.+..|.+..|+ ..+|.++++|+|+++.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-----vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl 145 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-----VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSL 145 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-----hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhh
Confidence 556789999999999999987331 00223334333332 2367889999999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
.+|++ +++...+.+++..|||+|.++.+-++...+...+-......+.. ...-.+..+++....++-.+|..+||.
T Consensus 146 slHW~--NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER--~GGiSphiSPf~qvrDiG~LL~rAGF~ 221 (325)
T KOG2940|consen 146 SLHWT--NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELER--EGGISPHISPFTQVRDIGNLLTRAGFS 221 (325)
T ss_pred hhhhh--ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHh--ccCCCCCcChhhhhhhhhhHHhhcCcc
Confidence 99999 88999999999999999999887666665554332211000000 000111224566778999999999999
Q ss_pred EEEEEEE
Q 045799 210 TVDINIH 216 (231)
Q Consensus 210 ~~~~~~~ 216 (231)
...++..
T Consensus 222 m~tvDtD 228 (325)
T KOG2940|consen 222 MLTVDTD 228 (325)
T ss_pred cceeccc
Confidence 8887654
No 87
>PLN03075 nicotianamine synthase; Provisional
Probab=99.03 E-value=6.5e-10 Score=87.44 Aligned_cols=87 Identities=14% Similarity=0.178 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CC-CCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NV-NPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~-~~~~fD~i 125 (231)
.++.+|+|||||.|..+..++....+. +..+.++|.++.++.. .. ..+.||+|
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p--~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLP--TTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEE
Confidence 367899999999887655554221111 1133444444322210 11 23689999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++. ++++++.++...+++.+++.|+|||++++..
T Consensus 200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 999 8999977899999999999999999999873
No 88
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.03 E-value=1.6e-09 Score=80.16 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=64.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------CCCCCCeeEEEEeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------NVNPSSVDVVTLIFML 131 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------~~~~~~fD~ii~~~~l 131 (231)
+...-|||||||+|.-+..+... +...+++|+|+.|++. ||..+.||.+|+...+
T Consensus 49 ~~~~~iLDIGCGsGLSg~vL~~~------Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 49 PKSGLILDIGCGSGLSGSVLSDS------GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCCcEEEEeccCCCcchheeccC------CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee
Confidence 35678999999999887555433 5578999999998753 7888999999998876
Q ss_pred ecc---------CCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 132 SAV---------SPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 132 ~~~---------~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.++ |..-+..++..++.+|+.|+..++-
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 654 2222346788899999999999775
No 89
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.02 E-value=8.9e-10 Score=76.47 Aligned_cols=80 Identities=18% Similarity=0.173 Sum_probs=56.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++.... ..+++++|+++.+++. +...++||+|+
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVP----NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC----CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEE
Confidence 4567999999999999998874321 1345666665443210 11235899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+.... .....+++.+++.|+|||.+++.
T Consensus 94 ~~~~~-----~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 94 IGGSG-----GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ECCcc-----hhHHHHHHHHHHHcCCCCEEEEE
Confidence 86643 34568999999999999999886
No 90
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.01 E-value=3.4e-10 Score=84.86 Aligned_cols=80 Identities=23% Similarity=0.361 Sum_probs=63.2
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCC--CCCeeEEEEee
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVN--PSSVDVVTLIF 129 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~--~~~fD~ii~~~ 129 (231)
..++|+|||+|..++-++.+.+ +++++|++..|+.. ++. +++.|+|++..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k------~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK------EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh------hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhh
Confidence 3899999999977777765533 56788888887742 223 78999999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCe-EEEEEecc
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDG-YILVCDYA 162 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG-~l~i~~~~ 162 (231)
++|++ ++..+++.++|+||+.| .+.+..+.
T Consensus 109 a~HWF---dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 109 AVHWF---DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hHHhh---chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 99999 67889999999998765 77766544
No 91
>PTZ00146 fibrillarin; Provisional
Probab=99.00 E-value=4.4e-09 Score=82.52 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=55.6
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc------------------------cCCCCCCCeeE
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL------------------------SRNVNPSSVDV 124 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~------------------------~~~~~~~~fD~ 124 (231)
...++.+|||+|||+|.++.+++....- .+ .++.+|+++.+. ......+++|+
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~--~G-~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGP--EG-VVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCC--CC-EEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCE
Confidence 3478899999999999999999833210 01 344555443211 00112357999
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
|++... .+++...++.++.+.|||||.+++.
T Consensus 206 V~~Dva----~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVA----QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCC----CcchHHHHHHHHHHhccCCCEEEEE
Confidence 988663 1255666777899999999999984
No 92
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.99 E-value=1.1e-09 Score=80.49 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=56.1
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLIF 129 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~~ 129 (231)
+..+|||+|||+|..+..++.... ...+..+|+++..+. ..+++++||+|+++-
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~----~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NP 106 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP----DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNP 106 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST----CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE--
T ss_pred cCCeEEEecCChHHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEcc
Confidence 568999999999999998884321 222344444433321 134568999999987
Q ss_pred eeeccCC---CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 130 MLSAVSP---KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 130 ~l~~~~~---~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
-++.-.. +-...+++.+.+.|+|||.+++.
T Consensus 107 P~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 107 PFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp -SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 6554411 12578899999999999999765
No 93
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=2.4e-09 Score=84.05 Aligned_cols=106 Identities=21% Similarity=0.341 Sum_probs=73.9
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------C-CCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------N-VNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~-~~~~~fD~ii 126 (231)
..++.++||+|||+|.++...+.... ..++++|+.+..+.. . ...++||+|+
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA-----~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIV 234 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGA-----KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIV 234 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCC-----ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEE
Confidence 35789999999999999988874321 134555554332210 1 1336999999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
++- |-.+ ...+...+++.++|||+++++-... --.+.+.+.+++.
T Consensus 235 ANI-LA~v----l~~La~~~~~~lkpgg~lIlSGIl~------------------------------~q~~~V~~a~~~~ 279 (300)
T COG2264 235 ANI-LAEV----LVELAPDIKRLLKPGGRLILSGILE------------------------------DQAESVAEAYEQA 279 (300)
T ss_pred ehh-hHHH----HHHHHHHHHHHcCCCceEEEEeehH------------------------------hHHHHHHHHHHhC
Confidence 976 3333 6788999999999999999872000 0235788899899
Q ss_pred CceEEEEEE
Q 045799 207 GFSTVDINI 215 (231)
Q Consensus 207 Gf~~~~~~~ 215 (231)
||+++++..
T Consensus 280 gf~v~~~~~ 288 (300)
T COG2264 280 GFEVVEVLE 288 (300)
T ss_pred CCeEeEEEe
Confidence 999998754
No 94
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.97 E-value=9.3e-10 Score=89.31 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=61.0
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------CCCCCCeeEEEEeeee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------NVNPSSVDVVTLIFML 131 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------~~~~~~fD~ii~~~~l 131 (231)
...+|||+|||+|.++..++.... ..+++++|++..++.. ....++||+|+++-.+
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p----~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPF 271 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSP----KIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPF 271 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCc
Confidence 346899999999999988874321 2345666665433321 1124789999999888
Q ss_pred eccC---CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 132 SAVS---PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 132 ~~~~---~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|+.. .+....+++.+.+.|+|||.+++..
T Consensus 272 H~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 272 HDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred cCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 8632 2346789999999999999998864
No 95
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.97 E-value=4.7e-09 Score=79.10 Aligned_cols=107 Identities=13% Similarity=0.162 Sum_probs=68.9
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDV 124 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~ 124 (231)
..++..|||+|||+|.++..++.... ...+++++|.++.+++. +...++||+
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~---~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~ 114 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVG---ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDR 114 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCE
Confidence 46788999999999999987752210 01233444444333210 112357999
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHH
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFL 204 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 204 (231)
|++.. .. .++..+++.+.+.|+|||.+++.... ..+..++...|+
T Consensus 115 V~~~~---~~--~~~~~~l~~~~~~LkpgG~lv~~~~~------------------------------~~~~~~~~~~l~ 159 (198)
T PRK00377 115 IFIGG---GS--EKLKEIISASWEIIKKGGRIVIDAIL------------------------------LETVNNALSALE 159 (198)
T ss_pred EEECC---Cc--ccHHHHHHHHHHHcCCCcEEEEEeec------------------------------HHHHHHHHHHHH
Confidence 99854 22 56788999999999999999874211 113467788888
Q ss_pred HcCceEEEEE
Q 045799 205 EAGFSTVDIN 214 (231)
Q Consensus 205 ~~Gf~~~~~~ 214 (231)
+.||......
T Consensus 160 ~~g~~~~~~~ 169 (198)
T PRK00377 160 NIGFNLEITE 169 (198)
T ss_pred HcCCCeEEEE
Confidence 8998544333
No 96
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.97 E-value=1.4e-08 Score=75.55 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=83.2
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc--------cCCC---CCCCeeEEEEeeeeeccC-CCCHH
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL--------SRNV---NPSSVDVVTLIFMLSAVS-PKKMP 140 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~--------~~~~---~~~~fD~ii~~~~l~~~~-~~~~~ 140 (231)
..++|||||=+..+...-. .-..++.+|+..... ..|+ ++++||+|+++.||.++| +.++-
T Consensus 52 ~lrlLEVGals~~N~~s~~-------~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG 124 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTS-------GWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRG 124 (219)
T ss_pred cceEEeecccCCCCccccc-------CceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHH
Confidence 4799999997554443211 123345555543221 1133 468999999999999998 66777
Q ss_pred HHHHHHHHhcCCCeE-----EEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 141 LILQNIKAVLKPDGY-----ILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 141 ~~l~~~~~~Lk~gG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
.+++++.+.|+|+|. +++..+.+ .+.. ++|++.+.|.++++..||..++.+.
T Consensus 125 ~Ml~r~~~fL~~~g~~~~~~LFlVlP~~-------------Cv~N----------SRy~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 125 EMLRRAHKFLKPPGLSLFPSLFLVLPLP-------------CVTN----------SRYMTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred HHHHHHHHHhCCCCccCcceEEEEeCch-------------Hhhc----------ccccCHHHHHHHHHhCCcEEEEEEe
Confidence 899999999999999 77653222 1111 3578999999999999999999876
Q ss_pred Eeeeee
Q 045799 216 HLKQIK 221 (231)
Q Consensus 216 ~~~~~~ 221 (231)
..+..+
T Consensus 182 ~~Kl~y 187 (219)
T PF11968_consen 182 SKKLAY 187 (219)
T ss_pred cCeEEE
Confidence 665554
No 97
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.97 E-value=4.1e-09 Score=82.24 Aligned_cols=158 Identities=16% Similarity=0.245 Sum_probs=93.3
Q ss_pred hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCc-------------------ccc---------ccceeee
Q 045799 53 YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHS-------------------EFR---------EERVNAF 104 (231)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~-------------------~~~---------~~~~~~~ 104 (231)
|+...+.+.. ..++..++++|||-|+.++.+.... +|. .-.+.++
T Consensus 105 wIKs~LI~~y-------~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~ 177 (389)
T KOG1975|consen 105 WIKSVLINLY-------TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFI 177 (389)
T ss_pred HHHHHHHHHH-------hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEE
Confidence 6665554444 3678899999999999887775110 000 0012344
Q ss_pred eecCCcccccC--CCCCCCeeEEEEeeeeecc--CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhcc-ccccc
Q 045799 105 VCNVVNDDLSR--NVNPSSVDVVTLIFMLSAV--SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDR-NQMIG 179 (231)
Q Consensus 105 ~~D~~~~~~~~--~~~~~~fD~ii~~~~l~~~--~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~-~~~~~ 179 (231)
.+|.+...+.. ++.+.+||+|-|-+++|+. +.+...-++.++.++|+|||+++-..+ ..+....++... ...++
T Consensus 178 ~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP-dsd~Ii~rlr~~e~~~~g 256 (389)
T KOG1975|consen 178 AADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP-DSDVIIKRLRAGEVERFG 256 (389)
T ss_pred EeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC-cHHHHHHHHHhccchhhc
Confidence 44544443332 2345569999999999975 456677889999999999999976522 221111000000 00111
Q ss_pred cce------------------------EEe-CCCeEEEeeCHHHHHHHHHHcCceEEEEEEEee
Q 045799 180 DSF------------------------YVR-GDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 180 ~~~------------------------~~~-~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
... +.. ......+......+..++++.|++++.+..+..
T Consensus 257 Ndiykv~y~~~~~k~~~~p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~d 320 (389)
T KOG1975|consen 257 NDIYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFAD 320 (389)
T ss_pred ceeeeEeeeeecccccCCCCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHHH
Confidence 111 110 011223456677899999999999998866543
No 98
>PRK14967 putative methyltransferase; Provisional
Probab=98.97 E-value=6.8e-09 Score=79.70 Aligned_cols=87 Identities=18% Similarity=0.254 Sum_probs=57.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc---------------------CCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------------------RNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~---------------------~~~~~~~fD~ii~~~ 129 (231)
.++.+|||+|||+|.++..++... ..+++++|+++.++. ..+++++||+|++.-
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~-----~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~np 109 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAG-----AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNP 109 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcC-----CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECC
Confidence 556899999999999998877431 014455565544331 123457899999964
Q ss_pred eeeccCC-------------------CCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 130 MLSAVSP-------------------KKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 130 ~l~~~~~-------------------~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
.....+. .....+++++.+.||+||.+++....
T Consensus 110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 2221100 01456888999999999999986433
No 99
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.96 E-value=1.7e-09 Score=81.19 Aligned_cols=88 Identities=20% Similarity=0.254 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------------CCCCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------------RNVNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------------~~~~~~~fD~ 124 (231)
.....|||||||+|.++..++... . ..+++++|++..++. ..++++++|.
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~--p--~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN--P--DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC--C--CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeE
Confidence 345689999999999999888331 1 224455555443321 1134568999
Q ss_pred EEEeeeeeccCCC------CHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 125 VTLIFMLSAVSPK------KMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 125 ii~~~~l~~~~~~------~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
|++.+...+.... ....++++++++|||||.+++.+..
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 9887643332100 1257899999999999999887533
No 100
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.94 E-value=2.5e-09 Score=87.25 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-------------------------CCCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------------------RNVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------------------~~~~~~~fD~i 125 (231)
..+..+||||||+|.++..++.... ...++++|++..++. ..++++++|.|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P----~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNP----NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCC----CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 4567899999999999999984321 234455555543321 14678899999
Q ss_pred EEeeeeeccCCC----CHHHHHHHHHHhcCCCeEEEEEe
Q 045799 126 TLIFMLSAVSPK----KMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 126 i~~~~l~~~~~~----~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++.+...+.... ....++.+++++|+|||.+.+.+
T Consensus 197 ~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 197 FVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred EEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 986543332100 12579999999999999999874
No 101
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.92 E-value=2.3e-09 Score=87.67 Aligned_cols=85 Identities=13% Similarity=0.221 Sum_probs=57.7
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-------------------------CCCCCCCeeEEE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------------------~~~~~~~fD~ii 126 (231)
...+|||+|||+|..+..++.... ..+++++|.+..++. ..++..+||+|+
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P----~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIl 303 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNP----QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVL 303 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEE
Confidence 346999999999999988873321 224455555533221 012345899999
Q ss_pred Eeeeeecc---CCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 127 LIFMLSAV---SPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 127 ~~~~l~~~---~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++-.+|.. +.+....+++.+++.|+|||.+++..
T Consensus 304 sNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 304 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 97665532 22234678999999999999998873
No 102
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.91 E-value=2.5e-09 Score=83.09 Aligned_cols=89 Identities=28% Similarity=0.353 Sum_probs=66.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc----------------ccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE----------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~----------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~ 134 (231)
.+..+|||||+|+|.++..++.... ....+++++..|+. . +++. +|++++.++||++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~----~~P~--~D~~~l~~vLh~~ 171 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-D----PLPV--ADVYLLRHVLHDW 171 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-T----CCSS--ESEEEEESSGGGS
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-h----hhcc--ccceeeehhhhhc
Confidence 4557899999999999999982110 01345566666665 2 3444 9999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCC--eEEEEEeccCCch
Q 045799 135 SPKKMPLILQNIKAVLKPD--GYILVCDYAIGDF 166 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~g--G~l~i~~~~~~~~ 166 (231)
++++...+|+++++.|+|| |.++|.++..++.
T Consensus 172 ~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 172 SDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp -HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 9889999999999999999 9999998776543
No 103
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.91 E-value=6.1e-09 Score=82.43 Aligned_cols=105 Identities=20% Similarity=0.319 Sum_probs=69.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------CCCCCCCeeEEEEee
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------RNVNPSSVDVVTLIF 129 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------~~~~~~~fD~ii~~~ 129 (231)
..++.+|||+|||+|.++...+.... -+++++|+.+.... ......+||+|+++-
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA-----~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvvANI 233 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGA-----KKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVVANI 233 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTB-----SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEEEES
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCC-----CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEEECC
Confidence 35678999999999999987763311 13455555443321 123458999999866
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
..+ -+..++..+.+.|+|||.++++-... -...++.+.+++ ||+
T Consensus 234 ~~~-----vL~~l~~~~~~~l~~~G~lIlSGIl~------------------------------~~~~~v~~a~~~-g~~ 277 (295)
T PF06325_consen 234 LAD-----VLLELAPDIASLLKPGGYLILSGILE------------------------------EQEDEVIEAYKQ-GFE 277 (295)
T ss_dssp -HH-----HHHHHHHHCHHHEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHT-TEE
T ss_pred CHH-----HHHHHHHHHHHhhCCCCEEEEccccH------------------------------HHHHHHHHHHHC-CCE
Confidence 433 35678888999999999999972111 234678888876 999
Q ss_pred EEEEEE
Q 045799 210 TVDINI 215 (231)
Q Consensus 210 ~~~~~~ 215 (231)
+++...
T Consensus 278 ~~~~~~ 283 (295)
T PF06325_consen 278 LVEERE 283 (295)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887643
No 104
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.89 E-value=5.7e-10 Score=83.30 Aligned_cols=89 Identities=18% Similarity=0.348 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCCCcchHHHh--cCc---cccccceeeeeecCCcccccC------------------------------
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV--SHS---EFREERVNAFVCNVVNDDLSR------------------------------ 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~--~~~---~~~~~~~~~~~~D~~~~~~~~------------------------------ 115 (231)
....+|+..||+||.=+-.++ ... ......+++.+.|++...+..
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 356899999999999666555 111 112225677788887666531
Q ss_pred ---------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 116 ---------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 116 ---------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+...+.||+|+|.+||-|++++....+++.+++.|+|||+|++.
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 22447999999999999998888899999999999999999985
No 105
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.89 E-value=1.2e-08 Score=78.19 Aligned_cols=115 Identities=13% Similarity=0.149 Sum_probs=76.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------------CCCCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------------RNVNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------------~~~~~~~fD~ 124 (231)
....+|||+|||+|..+..++.... ..++.++++.+.+.. ......+||+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~----~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~ 118 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTE----KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDL 118 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCC----CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCE
Confidence 4478999999999999988884311 123344444433322 1334458999
Q ss_pred EEEeeee----------------eccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCC
Q 045799 125 VTLIFML----------------SAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDG 188 (231)
Q Consensus 125 ii~~~~l----------------~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (231)
|+|+=-. +|...-+++.+++.+..+||+||.+.+.-
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~---------------------------- 170 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH---------------------------- 170 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe----------------------------
Confidence 9994211 12222356899999999999999998861
Q ss_pred eEEEeeCHHHHHHHHHHcCceEEEEEEEeeee
Q 045799 189 TCSFYFSEDFLSTLFLEAGFSTVDINIHLKQI 220 (231)
Q Consensus 189 ~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~ 220 (231)
+.....++.+++.+.+|+...+.-+....
T Consensus 171 ---r~erl~ei~~~l~~~~~~~k~i~~V~p~~ 199 (248)
T COG4123 171 ---RPERLAEIIELLKSYNLEPKRIQFVYPKI 199 (248)
T ss_pred ---cHHHHHHHHHHHHhcCCCceEEEEecCCC
Confidence 11234578889988889888876554443
No 106
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.89 E-value=1.3e-08 Score=76.06 Aligned_cols=88 Identities=22% Similarity=0.233 Sum_probs=57.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccc-----------ccC---------CCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDD-----------LSR---------NVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~-----------~~~---------~~~~~~fD~ii~~~~ 130 (231)
.++.+|||+|||+|.++..++.... ....++++|+++.+ ... .+++++||+|++...
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~---~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVG---GKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhC---CCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 6788999999999999887763321 11234555555421 000 134568999998543
Q ss_pred ee--------ccC-CCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 131 LS--------AVS-PKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 131 l~--------~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
.+ |.. .+....++..+.++|+|||++++..+
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 22 110 01236789999999999999998643
No 107
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.88 E-value=4e-09 Score=79.89 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=51.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------C-CCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------R-NVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~-~~~~~~fD~ii 126 (231)
.++.+|||+|||+|..+..++.... . .-+++++|+++.+.. . .....+||+|+
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~--~-~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 147 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIE--R-RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAII 147 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcC--C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEE
Confidence 5678999999999999877763211 0 012334444332211 0 11346899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+..++++++ .++.+.|+|||++++.
T Consensus 148 ~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 148 VTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred EccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 999888773 3578999999999875
No 108
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.88 E-value=9.4e-09 Score=81.47 Aligned_cols=108 Identities=20% Similarity=0.368 Sum_probs=69.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|..+..++.... ..+++++|+++.++. .++.+++||+|+++
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~----~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~n 182 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERP----DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSN 182 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEEC
Confidence 4667999999999999988874321 234455555543211 12234689999984
Q ss_pred ee------eeccCC------------------CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEE
Q 045799 129 FM------LSAVSP------------------KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYV 184 (231)
Q Consensus 129 ~~------l~~~~~------------------~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (231)
-. ++.+++ +....+++++.++|+|||.+++.. +
T Consensus 183 pPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g---------------------- 239 (275)
T PRK09328 183 PPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-G---------------------- 239 (275)
T ss_pred CCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-C----------------------
Confidence 21 111110 123578888999999999998841 0
Q ss_pred eCCCeEEEeeCHHHHHHHHHHcCceEEEE
Q 045799 185 RGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
+...+.+.+++++.||..+++
T Consensus 240 --------~~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 240 --------YDQGEAVRALLAAAGFADVET 260 (275)
T ss_pred --------chHHHHHHHHHHhCCCceeEE
Confidence 013457889999999975554
No 109
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.87 E-value=1.1e-08 Score=81.31 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEEe
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~~ 128 (231)
++.+|||+|||+|.++..++.... +.+++++|+++.++. .++++++||+|+++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~----~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP----EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEEC
Confidence 457899999999999998884321 224455555443321 12345689999985
Q ss_pred e------eeeccCC-----------------CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 129 F------MLSAVSP-----------------KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 129 ~------~l~~~~~-----------------~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
= .+.++++ +....+++.+.+.|+|||.+++.
T Consensus 197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 1111110 12367789999999999999875
No 110
>PHA03411 putative methyltransferase; Provisional
Probab=98.87 E-value=1.3e-08 Score=79.02 Aligned_cols=112 Identities=12% Similarity=0.093 Sum_probs=73.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------CCCCCCeeEEEEeeeeec
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------NVNPSSVDVVTLIFMLSA 133 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------~~~~~~fD~ii~~~~l~~ 133 (231)
....+|||+|||+|.++..++.... ..+++++|+++.++.. ...+.+||+|+++-.+.+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~----~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCK----PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGK 138 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccc
Confidence 3457999999999999887763311 2356677777665531 113468999999888777
Q ss_pred cCCCCH------------------HHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeC
Q 045799 134 VSPKKM------------------PLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFS 195 (231)
Q Consensus 134 ~~~~~~------------------~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (231)
.+..+. .+++......|+|+|.+++. +..... +..-.+
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss~~~-----------------------y~~sl~ 194 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSGRPY-----------------------YDGTMK 194 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-Eecccc-----------------------ccccCC
Confidence 643322 35566677888888876665 111110 012367
Q ss_pred HHHHHHHHHHcCceE
Q 045799 196 EDFLSTLFLEAGFST 210 (231)
Q Consensus 196 ~~~l~~~l~~~Gf~~ 210 (231)
.++..++++++||..
T Consensus 195 ~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 195 SNKYLKWSKQTGLVT 209 (279)
T ss_pred HHHHHHHHHhcCcEe
Confidence 788889999888865
No 111
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.84 E-value=1.5e-08 Score=83.30 Aligned_cols=106 Identities=14% Similarity=0.215 Sum_probs=67.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CC-CCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NV-NPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~-~~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..++.... ..+++++|+++.++.. .+ ..++||+|++
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p----~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVS 325 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERP----DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVS 325 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEE
Confidence 3456999999999999988773211 2244555555444321 11 2357999999
Q ss_pred eeeeeccCC-------------------------CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccce
Q 045799 128 IFMLSAVSP-------------------------KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSF 182 (231)
Q Consensus 128 ~~~l~~~~~-------------------------~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 182 (231)
+=- +++. +....++..+.+.|+|||.+++.. +
T Consensus 326 NPP--YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G-------------------- 382 (423)
T PRK14966 326 NPP--YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-G-------------------- 382 (423)
T ss_pred CCC--CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-C--------------------
Confidence 431 2110 113467777788999999987641 1
Q ss_pred EEeCCCeEEEeeCHHHHHHHHHHcCceEEEE
Q 045799 183 YVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
+-..+.+.+++++.||..+++
T Consensus 383 ----------~~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 383 ----------FDQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred ----------ccHHHHHHHHHHHCCCcEEEE
Confidence 123567899999999976655
No 112
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.84 E-value=6.3e-08 Score=70.54 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=75.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCC-CeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPS-SVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~-~fD~ii 126 (231)
..++..++|||||||..+..++... ...+++.+|-.++.+. ..+++. ++|.|+
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~----p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiF 107 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAG----PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIF 107 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhC----CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEE
Confidence 5788999999999999999998110 1223333333222211 012222 799999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
.... . ....+++.+...|||||++++..... -+.....+.+++.
T Consensus 108 IGGg-~-----~i~~ile~~~~~l~~ggrlV~naitl------------------------------E~~~~a~~~~~~~ 151 (187)
T COG2242 108 IGGG-G-----NIEEILEAAWERLKPGGRLVANAITL------------------------------ETLAKALEALEQL 151 (187)
T ss_pred ECCC-C-----CHHHHHHHHHHHcCcCCeEEEEeecH------------------------------HHHHHHHHHHHHc
Confidence 9886 3 45779999999999999998852111 2445677888899
Q ss_pred Cc-eEEEEEEEeeeeec
Q 045799 207 GF-STVDINIHLKQIKN 222 (231)
Q Consensus 207 Gf-~~~~~~~~~~~~~~ 222 (231)
|+ +++++.+.......
T Consensus 152 g~~ei~~v~is~~~~lg 168 (187)
T COG2242 152 GGREIVQVQISRGKPLG 168 (187)
T ss_pred CCceEEEEEeecceecc
Confidence 99 77777665554443
No 113
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.81 E-value=1.1e-08 Score=81.08 Aligned_cols=132 Identities=18% Similarity=0.226 Sum_probs=84.3
Q ss_pred CCeEEEEcCCCCcchHHHhcCcc------------------ccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeecc
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSE------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~ 134 (231)
-...+|+|.|.|+.+..++.... +. .++..+.+|.- .. .|. -|+|++-.++||+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~gV~~v~gdmf----q~-~P~--~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PGVEHVAGDMF----QD-TPK--GDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CCcceeccccc----cc-CCC--cCeEEEEeecccC
Confidence 47899999999999999984211 10 12222223322 22 233 3799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEEEeccCCc-hhhhhhhccccccccceE--EeCCCeEEEeeCHHHHHHHHHHcCceEE
Q 045799 135 SPKKMPLILQNIKAVLKPDGYILVCDYAIGD-FAQVKLLDRNQMIGDSFY--VRGDGTCSFYFSEDFLSTLFLEAGFSTV 211 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 211 (231)
++++..++|++++..|+|+|.+++.+...+. ......... ........ ...++.. -.+.+++..++.++||.+.
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~-v~~~~d~lm~~~~~~Gk--ert~~e~q~l~~~~gF~~~ 326 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSS-VTRDMDLLMLTQTSGGK--ERTLKEFQALLPEEGFPVC 326 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccc-eeehhHHHHHHHhccce--eccHHHHHhcchhhcCcee
Confidence 9999999999999999999999999874443 111000000 00000000 0111111 2478999999999999888
Q ss_pred EEEE
Q 045799 212 DINI 215 (231)
Q Consensus 212 ~~~~ 215 (231)
++-.
T Consensus 327 ~~~~ 330 (342)
T KOG3178|consen 327 MVAL 330 (342)
T ss_pred EEEe
Confidence 7644
No 114
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.80 E-value=1.1e-08 Score=83.12 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=54.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
.++..|||+|||+|.++..++.. +..++++|++..++. .++.+++||+|++
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~------~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~ 254 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLM------GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIAT 254 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHh------CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEE
Confidence 67789999999999988766521 123444454443321 1334678999999
Q ss_pred eeeeec---cCC----CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 128 IFMLSA---VSP----KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 128 ~~~l~~---~~~----~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.-.... ... +-...+++++.+.|+|||.+++.
T Consensus 255 dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 255 DPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred CCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 532111 100 12578999999999999999876
No 115
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.80 E-value=2.3e-08 Score=79.56 Aligned_cols=82 Identities=16% Similarity=0.312 Sum_probs=54.6
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEEe--
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTLI-- 128 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~~-- 128 (231)
.+|||+|||+|..+..++.... ..+++++|+++.++. .++++++||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~----~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP----NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCC
Confidence 6899999999999988874321 234555565544431 12334489999985
Q ss_pred -----------eeeeccCC----------CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 129 -----------FMLSAVSP----------KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 129 -----------~~l~~~~~----------~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.++.|-|. +....+++.+.+.|+|||++++.
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 12333221 13567899999999999999775
No 116
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.78 E-value=9.1e-09 Score=78.31 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=51.4
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii 126 (231)
..++.+|||||||+|..+..++.... ...+++++|+++.+.. ...+.++||+|+
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~---~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~ 150 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVG---KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIY 150 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEE
Confidence 36789999999999999977763211 0113344444332221 012457899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+...++++ .+.+.+.|||||.+++.
T Consensus 151 ~~~~~~~~--------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 151 VTAAGPDI--------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred ECCCcccc--------hHHHHHhhCCCcEEEEE
Confidence 98766554 23567789999999885
No 117
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.75 E-value=2.1e-08 Score=66.67 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=57.6
Q ss_pred eEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------C--CCCCCCeeEEEEeee
Q 045799 75 VVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------R--NVNPSSVDVVTLIFM 130 (231)
Q Consensus 75 ~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~--~~~~~~fD~ii~~~~ 130 (231)
+|+|+|||+|..+..++.. ....+.++|.++.... . .....+||+|++..+
T Consensus 1 ~ildig~G~G~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASG-----PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcC-----CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc
Confidence 4899999999999888741 1234455554432211 0 113568999999999
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
++++ .+....+++.+.+.|+++|.+++.
T Consensus 76 ~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9883 278899999999999999999875
No 118
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.73 E-value=4.7e-08 Score=78.43 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=52.8
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEEee-
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTLIF- 129 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~~~- 129 (231)
.+|||+|||+|.++..++.... ..+++++|+++.++. ..+++++||+|+++=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p----~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP----DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCC
Confidence 6899999999999988873311 224445555433321 123446899999851
Q ss_pred -----ee-------eccCC----------CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 130 -----ML-------SAVSP----------KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 130 -----~l-------~~~~~----------~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.+ +|-|. +....+++.+.+.|+|||.+++.
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11 12111 12357889999999999999875
No 119
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.72 E-value=2.5e-08 Score=76.19 Aligned_cols=79 Identities=14% Similarity=0.065 Sum_probs=51.6
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii 126 (231)
..++.+|||||||+|.++..++..... ..+++++|.++.++.. ....++||+|+
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~---~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii 151 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGR---DGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIY 151 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEE
Confidence 367889999999999999888733110 1123444444332210 11235899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+.....++ ...+.+.|+|||++++.
T Consensus 152 ~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 152 VTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred EcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 87765554 24578899999999875
No 120
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.70 E-value=9.5e-08 Score=71.90 Aligned_cols=81 Identities=9% Similarity=0.265 Sum_probs=50.2
Q ss_pred CCCCeeEEEEeee--eeccC--CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEe
Q 045799 118 NPSSVDVVTLIFM--LSAVS--PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFY 193 (231)
Q Consensus 118 ~~~~fD~ii~~~~--l~~~~--~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (231)
....||+|+|..+ .-|++ ++-+..++++++++|.|||+|++..-........ .. ..+.+..+++ ...
T Consensus 163 ~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~ka-ar-~~e~~~~ny~-------~i~ 233 (288)
T KOG2899|consen 163 IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKKA-AR-RSEKLAANYF-------KIF 233 (288)
T ss_pred ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHHH-HH-HHHHhhcCcc-------cee
Confidence 4568999999776 33554 6778999999999999999998862111111100 00 0011112221 345
Q ss_pred eCHHHHHHHHHHcC
Q 045799 194 FSEDFLSTLFLEAG 207 (231)
Q Consensus 194 ~~~~~l~~~l~~~G 207 (231)
+.++....++.+.+
T Consensus 234 lkp~~f~~~l~q~~ 247 (288)
T KOG2899|consen 234 LKPEDFEDWLNQIV 247 (288)
T ss_pred cCHHHHHhhhhhhh
Confidence 77888888888764
No 121
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=6.8e-08 Score=71.89 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=57.1
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCc---------------------cccccceeeeeecCCcccccCCCCCCCeeEEEEe
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHS---------------------EFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLI 128 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~---------------------~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~ 128 (231)
..++.+|||||||+|..+.-|+... ...-.++.+...|-+.... +..+||.|+..
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~----~~aPyD~I~Vt 145 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP----EEAPYDRIIVT 145 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC----CCCCcCEEEEe
Confidence 4788999999999999998887111 1111236666777765432 34799999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.....+|. .+.+.|++||++++-.
T Consensus 146 aaa~~vP~--------~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 146 AAAPEVPE--------ALLDQLKPGGRLVIPV 169 (209)
T ss_pred eccCCCCH--------HHHHhcccCCEEEEEE
Confidence 98877742 3578899999998864
No 122
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.70 E-value=8.5e-08 Score=82.01 Aligned_cols=107 Identities=21% Similarity=0.365 Sum_probs=67.9
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEEe
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~~ 128 (231)
++.+|||+|||+|.++..++.... ..+++++|+++.++.. .++.++||+|+++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p----~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsN 213 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP----NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSN 213 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC----CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEEC
Confidence 346899999999999988873311 2355666666443321 2234689999983
Q ss_pred e--------------eeeccC-------C---CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEE
Q 045799 129 F--------------MLSAVS-------P---KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYV 184 (231)
Q Consensus 129 ~--------------~l~~~~-------~---~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (231)
- +..|-| . +....+++.+.+.|+|||.+++. .+.
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~--------------------- 271 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGF--------------------- 271 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECC---------------------
Confidence 2 111111 0 12345778889999999999774 111
Q ss_pred eCCCeEEEeeCHHHHHHHHHHcCceEEEE
Q 045799 185 RGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
-..+.+.+++.+.||..+++
T Consensus 272 ---------~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 272 ---------KQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred ---------chHHHHHHHHHhcCCCceEE
Confidence 13457788888888876654
No 123
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.69 E-value=2.1e-08 Score=79.10 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=38.0
Q ss_pred CCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.+.||+|+|.+++.|++++....+++++++.|+|||+|++.
T Consensus 221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 47899999999999998888999999999999999999885
No 124
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.68 E-value=3.9e-08 Score=76.65 Aligned_cols=88 Identities=17% Similarity=0.265 Sum_probs=67.5
Q ss_pred CCCeEEEEcCCCCcchHHHh--cCcc---ccccceeeeeecCCcccccC-------------------------------
Q 045799 72 NPKVVLEVGCGAGNTIFPLV--SHSE---FREERVNAFVCNVVNDDLSR------------------------------- 115 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~--~~~~---~~~~~~~~~~~D~~~~~~~~------------------------------- 115 (231)
...+|...||+||.=.-.+| .... .....+++.+.|++...+..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47899999999999665555 1111 23346777888877655431
Q ss_pred ---------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 116 ---------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 116 ---------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+...+.||+|+|.+|+-+++.+....++.+++..|+|||+|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 11346799999999999998888899999999999999999985
No 125
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.68 E-value=1.3e-07 Score=71.10 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=51.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++.... +.+++++|.++.++.. ......+|.++
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~----~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~ 114 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCP----KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVC 114 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEE
Confidence 5678999999999999988863211 2345666665444321 00011234443
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.. . ......+++++.+.|+|||.+++..
T Consensus 115 ~~----~--~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 115 IE----G--GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred EE----C--CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 31 1 1456889999999999999998874
No 126
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.68 E-value=3.6e-08 Score=67.70 Aligned_cols=83 Identities=16% Similarity=0.288 Sum_probs=54.7
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------------CCCCCCCeeEEE
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------------~~~~~~~fD~ii 126 (231)
+.+|||+|||+|.++..++... ..++.++|+.+.... ..+.+++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-----~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-----AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-----TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-----CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEE
Confidence 4689999999999998887331 123344444433221 135679999999
Q ss_pred EeeeeeccC------CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 127 LIFMLSAVS------PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 127 ~~~~l~~~~------~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++-.+.... .+....+++++.++|+|||.+++..
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 976544221 1234688999999999999998864
No 127
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.65 E-value=6e-08 Score=73.90 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=50.7
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc----------------------cCCC-CCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL----------------------SRNV-NPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~----------------------~~~~-~~~~fD~ii 126 (231)
..++.+|||+|||+|..+..++.... .++++|.++.+. ...+ ..++||+|+
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~------~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~ 149 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR------RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRIL 149 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC------EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEE
Confidence 36778999999999998876652210 223333332221 0111 236899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
+...++++ .+.+.+.|+|||.+++...
T Consensus 150 ~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 150 VTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 98766655 2456889999999988643
No 128
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.63 E-value=5.6e-08 Score=74.96 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=77.0
Q ss_pred HHhhHHHHHHhccCCcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCc-
Q 045799 32 AKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVN- 110 (231)
Q Consensus 32 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~- 110 (231)
+.+|...+|......|..++.-......+.+... ..+..++|+|||.|.....- ..+-.+++|++.
T Consensus 10 eqeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~-----~~gsv~~d~gCGngky~~~~--------p~~~~ig~D~c~~ 76 (293)
T KOG1331|consen 10 EQEYVHSIYDKIATHFSATRAAPWPMVRQFLDSQ-----PTGSVGLDVGCGNGKYLGVN--------PLCLIIGCDLCTG 76 (293)
T ss_pred HHHHhHHHHHHhhhhccccccCccHHHHHHHhcc-----CCcceeeecccCCcccCcCC--------Ccceeeecchhhh
Confidence 4456666666666555544443333333334332 56889999999999654210 122233333332
Q ss_pred ----------------ccccCCCCCCCeeEEEEeeeeeccC-CCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 111 ----------------DDLSRNVNPSSVDVVTLIFMLSAVS-PKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 111 ----------------~~~~~~~~~~~fD~ii~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
+++..|+.+.+||.+++..++||+. .+-...+++++.+.|+|||...+..+
T Consensus 77 l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 77 LLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 2234477889999999999999996 55678899999999999999777543
No 129
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.62 E-value=3.4e-07 Score=71.05 Aligned_cols=140 Identities=15% Similarity=0.236 Sum_probs=89.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------------CCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------------NVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------------~~~~~~fD 123 (231)
..+.+||||+||.|+.....+.... .....+...|.++..++. .--.-..+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~--~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHP--ERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCC--CCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 4678999999999998776663222 112234455555544321 00123579
Q ss_pred EEEEeeeeeccCCCCH-HHHHHHHHHhcCCCeEEEEEe--ccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHH
Q 045799 124 VVTLIFMLSAVSPKKM-PLILQNIKAVLKPDGYILVCD--YAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLS 200 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~-~~~l~~~~~~Lk~gG~l~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 200 (231)
+++++..++.+++.+. ...++.+++++.|||+++... +++......+.. ....-+..|. ...-+..++.
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~L-tsHr~g~~Wv-------MRrRsq~EmD 283 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVL-TSHRDGKAWV-------MRRRSQAEMD 283 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHH-hcccCCCceE-------EEecCHHHHH
Confidence 9999999999976554 456999999999999998764 222221111111 1111122333 3457899999
Q ss_pred HHHHHcCceEEEEEEEeeee
Q 045799 201 TLFLEAGFSTVDINIHLKQI 220 (231)
Q Consensus 201 ~~l~~~Gf~~~~~~~~~~~~ 220 (231)
++++++||+-+......+.+
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GI 303 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGI 303 (311)
T ss_pred HHHHHcCCchhhheeccCCc
Confidence 99999999988777666554
No 130
>PRK00811 spermidine synthase; Provisional
Probab=98.59 E-value=1.3e-07 Score=75.16 Aligned_cols=86 Identities=24% Similarity=0.300 Sum_probs=54.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc----------------------------cccceeeeeecCCcccccCCCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF----------------------------REERVNAFVCNVVNDDLSRNVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~----------------------------~~~~~~~~~~D~~~~~~~~~~~~~~f 122 (231)
+++.+||+||||+|..+..++..... ...+++++..|...-. ....++|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l---~~~~~~y 151 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV---AETENSF 151 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH---hhCCCcc
Confidence 45689999999999999988743110 1122233333322110 1135789
Q ss_pred eEEEEeeeeeccCCCC--HHHHHHHHHHhcCCCeEEEEE
Q 045799 123 DVVTLIFMLSAVSPKK--MPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 123 D~ii~~~~l~~~~~~~--~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
|+|++...-.+.+... ...+++.+++.|+|||++++.
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999865333222111 267899999999999999875
No 131
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.59 E-value=6.8e-07 Score=71.70 Aligned_cols=130 Identities=16% Similarity=0.240 Sum_probs=82.6
Q ss_pred chhHHHhhHHHhhHHHHHHhccCCcccchh---hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCcccccc
Q 045799 23 PLEEHYQSKAKKYWDGFYKRHKNKFFKDRH---YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREE 99 (231)
Q Consensus 23 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~ 99 (231)
..+-.|+....+.|+.+... ..++-.+. -+.....++.... .++..|+|+|||+|.-+..|+....-...
T Consensus 31 p~k~~YD~~Gs~LFe~It~l--pEYYptr~E~~iL~~~~~~Ia~~i-----~~~~~lIELGsG~~~Kt~~LL~aL~~~~~ 103 (319)
T TIGR03439 31 PTLLLYDDEGLKLFEEITYS--PEYYLTNDEIEILKKHSSDIAASI-----PSGSMLVELGSGNLRKVGILLEALERQKK 103 (319)
T ss_pred ChHhhhcchHHHHHHHHHcC--CccCChHHHHHHHHHHHHHHHHhc-----CCCCEEEEECCCchHHHHHHHHHHHhcCC
Confidence 33567788888888887533 22222111 2223333444332 66779999999999988887733221222
Q ss_pred ceeeeeecCCcccccC---------------------------CCC----CCCeeEEEEe-eeeeccCCCCHHHHHHHHH
Q 045799 100 RVNAFVCNVVNDDLSR---------------------------NVN----PSSVDVVTLI-FMLSAVSPKKMPLILQNIK 147 (231)
Q Consensus 100 ~~~~~~~D~~~~~~~~---------------------------~~~----~~~fD~ii~~-~~l~~~~~~~~~~~l~~~~ 147 (231)
.+.++.+|+|...+.. .++ .....+++.. .+|..+++++...+|++++
T Consensus 104 ~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~ 183 (319)
T TIGR03439 104 SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFL 183 (319)
T ss_pred CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHH
Confidence 4567777777654421 011 1234555554 4799998888999999999
Q ss_pred H-hcCCCeEEEEE
Q 045799 148 A-VLKPDGYILVC 159 (231)
Q Consensus 148 ~-~Lk~gG~l~i~ 159 (231)
+ .|+|||.+++.
T Consensus 184 ~~~l~~~d~lLiG 196 (319)
T TIGR03439 184 ATALSPSDSFLIG 196 (319)
T ss_pred HhhCCCCCEEEEe
Confidence 9 99999998874
No 132
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.56 E-value=1.5e-06 Score=67.78 Aligned_cols=83 Identities=19% Similarity=0.234 Sum_probs=57.0
Q ss_pred CCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHH
Q 045799 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDF 198 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (231)
.++||+|+..+.+.-. ++....+..|.++|||||+++=. ++--....... ..+...--++.++
T Consensus 163 ~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN~--GPLlyh~~~~~-------------~~~~~sveLs~eE 225 (270)
T PF07942_consen 163 KGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWINF--GPLLYHFEPMS-------------IPNEMSVELSLEE 225 (270)
T ss_pred CCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEec--CCccccCCCCC-------------CCCCcccCCCHHH
Confidence 4799999999888766 78899999999999999977532 22111000000 0000012378899
Q ss_pred HHHHHHHcCceEEEEEEEee
Q 045799 199 LSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 199 l~~~l~~~Gf~~~~~~~~~~ 218 (231)
+..+++..||+++..+....
T Consensus 226 i~~l~~~~GF~~~~~~~~i~ 245 (270)
T PF07942_consen 226 IKELIEKLGFEIEKEESSIL 245 (270)
T ss_pred HHHHHHHCCCEEEEEEEeee
Confidence 99999999999998776443
No 133
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=5.7e-07 Score=68.57 Aligned_cols=79 Identities=25% Similarity=0.305 Sum_probs=57.2
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcC--------------------------ccccccceeeeeecCCcccccCCCCCCCe
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSH--------------------------SEFREERVNAFVCNVVNDDLSRNVNPSSV 122 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~--------------------------~~~~~~~~~~~~~D~~~~~~~~~~~~~~f 122 (231)
...++.+|||.|.|+|.++..|+.. ..+. ..+.....|+.... ..+.|
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~-d~v~~~~~Dv~~~~-----~~~~v 164 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG-DRVTLKLGDVREGI-----DEEDV 164 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc-cceEEEeccccccc-----ccccc
Confidence 3578999999999999999999810 0111 11334445554332 23489
Q ss_pred eEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 123 DVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 123 D~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|+|++ .+ .++-.++..+++.|+|||.+++..
T Consensus 165 Dav~L-----Dm--p~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 165 DAVFL-----DL--PDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred CEEEE-----cC--CChHHHHHHHHHHhCCCcEEEEEc
Confidence 99988 44 789999999999999999998863
No 134
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.52 E-value=6.2e-07 Score=70.00 Aligned_cols=83 Identities=17% Similarity=0.293 Sum_probs=51.2
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------CCC---CCCeeEEEEeee
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------NVN---PSSVDVVTLIFM 130 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------~~~---~~~fD~ii~~~~ 130 (231)
..+|||+|||+|.++..++.... ..+++++|+++.++.. .++ .++||+|+++=-
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~----~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPP 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD----GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAP 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCC
Confidence 45899999999999988873211 1233444444433210 111 257999998531
Q ss_pred ------eeccCCC------------------CHHHHHHHHHHhcCCCeEEEEE
Q 045799 131 ------LSAVSPK------------------KMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 131 ------l~~~~~~------------------~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+..++++ -...++..+.+.|+|||.+++.
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1111110 1357888888999999999875
No 135
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.51 E-value=1.1e-06 Score=74.04 Aligned_cols=92 Identities=14% Similarity=0.191 Sum_probs=58.4
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------C----CCCCC
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------N----VNPSS 121 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~----~~~~~ 121 (231)
...++.+|||+|||+|..+..++.... + ...++++|++..++.. + ...++
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~--~-~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~ 325 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMG--D-QGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGY 325 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhC--C-CceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccccc
Confidence 345788999999999999988873211 0 1133444444332210 1 23468
Q ss_pred eeEEEEe------eeeeccCC-------CC-------HHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 122 VDVVTLI------FMLSAVSP-------KK-------MPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 122 fD~ii~~------~~l~~~~~-------~~-------~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
||.|++. .++.+-|+ ++ ...++..+.+.|||||.++.++.+.
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999973 34444321 01 4688999999999999998876444
No 136
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=2.8e-07 Score=72.25 Aligned_cols=85 Identities=20% Similarity=0.231 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~ 128 (231)
..+.+|||+|||.|.++..++.... ..++..+|++...++ .+..+ +||+|+++
T Consensus 157 ~~~~~vlDlGCG~Gvlg~~la~~~p----~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisN 231 (300)
T COG2813 157 DLGGKVLDLGCGYGVLGLVLAKKSP----QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG-KFDLIISN 231 (300)
T ss_pred cCCCcEEEeCCCccHHHHHHHHhCC----CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc-cccEEEeC
Confidence 4456999999999999999984322 112233333322211 12233 89999998
Q ss_pred eeeeccC---CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 129 FMLSAVS---PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 129 ~~l~~~~---~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
=-||-=- ..--.++++...+.|++||.+.+.-
T Consensus 232 PPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 232 PPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred CCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 7776321 1112489999999999999998874
No 137
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.50 E-value=1.3e-06 Score=67.43 Aligned_cols=83 Identities=24% Similarity=0.342 Sum_probs=54.9
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhc---------------------Ccccc----ccceeeeeecCCcccccCCCCCCCee
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVS---------------------HSEFR----EERVNAFVCNVVNDDLSRNVNPSSVD 123 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~---------------------~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~fD 123 (231)
...++.+|||.|.|+|.++..|+. ..++. ...+.+...|+...-+.... +..+|
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~-~~~~D 115 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL-ESDFD 115 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT--TTSEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc-cCccc
Confidence 358999999999999999999981 01111 23566777888754442222 36899
Q ss_pred EEEEeeeeeccCCCCHHHHHHHHHHhc-CCCeEEEEE
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNIKAVL-KPDGYILVC 159 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~~~~L-k~gG~l~i~ 159 (231)
.|++ .+ .++-.++..+.+.| ++||++.+-
T Consensus 116 avfL-----Dl--p~Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 116 AVFL-----DL--PDPWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp EEEE-----ES--SSGGGGHHHHHHHE-EEEEEEEEE
T ss_pred EEEE-----eC--CCHHHHHHHHHHHHhcCCceEEEE
Confidence 9988 44 67888999999999 899999775
No 138
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.49 E-value=1.2e-07 Score=78.74 Aligned_cols=92 Identities=21% Similarity=0.315 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc-------cc--ccceeee---eecCC---cccccCCCCCCCeeEEEEeeeeeccC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE-------FR--EERVNAF---VCNVV---NDDLSRNVNPSSVDVVTLIFMLSAVS 135 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~-------~~--~~~~~~~---~~D~~---~~~~~~~~~~~~fD~ii~~~~l~~~~ 135 (231)
..-..+||+|||+|.++..|+...- .. ...+++. ++-.. -..-..||+++.||+|.|..++....
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~ 195 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWH 195 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccch
Confidence 3345699999999999999983310 00 0011111 00000 00113488999999999998865443
Q ss_pred CCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 136 PKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 136 ~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
..+ .-+|-++.|+|+|||+++.+....
T Consensus 196 ~~~-g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 196 PND-GFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred hcc-cceeehhhhhhccCceEEecCCcc
Confidence 222 457889999999999998875443
No 139
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=1.2e-06 Score=73.69 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=57.0
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeE
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDV 124 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ 124 (231)
...++.+|||+|||+|..+..++.... +..++++|.++.++.. .+..++||.
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~----~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAP----QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcC----CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCE
Confidence 346788999999999999988874321 1234444544433210 123467999
Q ss_pred EEEee------eeeccC-------CC-------CHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 125 VTLIF------MLSAVS-------PK-------KMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 125 ii~~~------~l~~~~-------~~-------~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
|++.. ++.+-| ++ ....++..+.+.|||||.++.++.+.
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99522 121111 01 12478999999999999999876433
No 140
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=1.2e-06 Score=69.30 Aligned_cols=101 Identities=19% Similarity=0.336 Sum_probs=67.6
Q ss_pred eEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------CC--CCCCeeEEEEeeeeec
Q 045799 75 VVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------NV--NPSSVDVVTLIFMLSA 133 (231)
Q Consensus 75 ~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------~~--~~~~fD~ii~~~~l~~ 133 (231)
+|||+|||+|..+..++.... ..+++++|+++..+.. .| -.++||+|+++= -|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~----~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNP--PY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP----DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNP--PY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc----CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCC--CC
Confidence 799999999999999985432 2466777777644421 01 124899999943 12
Q ss_pred cCCC-------------------------CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCC
Q 045799 134 VSPK-------------------------KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDG 188 (231)
Q Consensus 134 ~~~~-------------------------~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (231)
+|.+ -...++..+.+.|+|||.+++.. +
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~-g-------------------------- 239 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI-G-------------------------- 239 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE-C--------------------------
Confidence 2211 23577888899999999887751 1
Q ss_pred eEEEeeCHHHHHHHHHHcC-ceEEE
Q 045799 189 TCSFYFSEDFLSTLFLEAG-FSTVD 212 (231)
Q Consensus 189 ~~~~~~~~~~l~~~l~~~G-f~~~~ 212 (231)
+-..+.+.+++.+.| |..+.
T Consensus 240 ----~~q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 240 ----LTQGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred ----CCcHHHHHHHHHhcCCceEEE
Confidence 123567889999999 55443
No 141
>PRK04457 spermidine synthase; Provisional
Probab=98.47 E-value=3.8e-07 Score=71.58 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=54.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc--------------------c----cccceeeeeecCCcccccCCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE--------------------F----REERVNAFVCNVVNDDLSRNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~--------------------~----~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++.... + ...+++++..|..... .-..++||+|+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l---~~~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI---AVHRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH---HhCCCCCCEEE
Confidence 4567999999999999988873211 0 0122333333332111 11235899999
Q ss_pred Eeeee-eccCC-CCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 127 LIFML-SAVSP-KKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 127 ~~~~l-~~~~~-~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+...- ...+. -....+++.+++.|+|||++++..+..
T Consensus 142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 75311 11111 123789999999999999999854433
No 142
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.46 E-value=4.8e-07 Score=71.50 Aligned_cols=85 Identities=19% Similarity=0.252 Sum_probs=54.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------------CCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------------NVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------------~~~~~~f 122 (231)
+.+.+||+||||+|..+..++.... ..++..+|+++..+.. ....++|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~----~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~y 146 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS----VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTF 146 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC----cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCc
Confidence 3456999999999999988874321 1133444444332110 0014689
Q ss_pred eEEEEeeeeeccCCCC--HHHHHHHHHHhcCCCeEEEEE
Q 045799 123 DVVTLIFMLSAVSPKK--MPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 123 D~ii~~~~l~~~~~~~--~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
|+|++......-+... ...+++.+++.|+|||++++.
T Consensus 147 DvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 147 DVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred cEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9999865422222222 467899999999999999886
No 143
>PRK01581 speE spermidine synthase; Validated
Probab=98.46 E-value=1.1e-06 Score=71.12 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=52.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------------CCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------------NVNP 119 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------------~~~~ 119 (231)
..+.+||+||||+|..+..++.... ..++..+|+.+.+++. ....
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~----v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~ 224 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYET----VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS 224 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCC----CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC
Confidence 5567999999999998887773211 1122333333222110 1134
Q ss_pred CCeeEEEEeeeee---ccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 120 SSVDVVTLIFMLS---AVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 120 ~~fD~ii~~~~l~---~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
++||+|++...-. ....--...+++.+++.|+|||++++.
T Consensus 225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 6899999864211 011112256899999999999998775
No 144
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.45 E-value=6.2e-07 Score=75.42 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=60.9
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CC--CCCCe
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NV--NPSSV 122 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~--~~~~f 122 (231)
...++.+|||+|||+|..+..++.... ...++++|++..++.. +. ..++|
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~----~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAP----QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcC----CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccccc
Confidence 345788999999999999988874321 1234445544433210 11 35679
Q ss_pred eEEEE------eeeeeccCCC--------------CHHHHHHHHHHhcCCCeEEEEEeccCC
Q 045799 123 DVVTL------IFMLSAVSPK--------------KMPLILQNIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 123 D~ii~------~~~l~~~~~~--------------~~~~~l~~~~~~Lk~gG~l~i~~~~~~ 164 (231)
|.|++ .+++++.|+- ....++..+.++|||||.++.++.+..
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 99996 2455554310 136799999999999999999876553
No 145
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.45 E-value=1.8e-06 Score=64.90 Aligned_cols=121 Identities=14% Similarity=0.132 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCc--------------------ccc----ccceeeeeecCCcccccCCCCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHS--------------------EFR----EERVNAFVCNVVNDDLSRNVNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~--------------------~~~----~~~~~~~~~D~~~~~~~~~~~~~~fD~i 125 (231)
.+.+.+|||.+.|-|.++...+... .|+ ...+.++..|.. ++-..|.|++||+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~--e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAY--EVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHH--HHHhcCCccccceE
Confidence 4578999999999999998877221 111 113344444442 12236789999998
Q ss_pred EEeee-eeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHH
Q 045799 126 TLIFM-LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFL 204 (231)
Q Consensus 126 i~~~~-l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 204 (231)
+--=- |.+...--...++.+++|+|||||.++-..-.+..... + .--...+.+.|.
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr----------G-------------~d~~~gVa~RLr 266 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR----------G-------------LDLPKGVAERLR 266 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc----------c-------------CChhHHHHHHHH
Confidence 75110 11111112467999999999999999876433321110 0 012367889999
Q ss_pred HcCceEEEEEE
Q 045799 205 EAGFSTVDINI 215 (231)
Q Consensus 205 ~~Gf~~~~~~~ 215 (231)
++||++++...
T Consensus 267 ~vGF~~v~~~~ 277 (287)
T COG2521 267 RVGFEVVKKVR 277 (287)
T ss_pred hcCceeeeeeh
Confidence 99999877544
No 146
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.43 E-value=2.7e-07 Score=69.75 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=48.0
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCc------------------------cccccceeeeeecCCcccccCCCCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHS------------------------EFREERVNAFVCNVVNDDLSRNVNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~------------------------~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~i 125 (231)
..++.+|||||||+|..+..++... .....++.+...|...... ...+||.|
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~----~~apfD~I 145 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP----EEAPFDRI 145 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG----GG-SEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc----cCCCcCEE
Confidence 4789999999999999998777110 0001234455555442211 24689999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
++......+| ..+.+.|++||++++-
T Consensus 146 ~v~~a~~~ip--------~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 146 IVTAAVPEIP--------EALLEQLKPGGRLVAP 171 (209)
T ss_dssp EESSBBSS----------HHHHHTEEEEEEEEEE
T ss_pred EEeeccchHH--------HHHHHhcCCCcEEEEE
Confidence 9998776552 2367789999999885
No 147
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.42 E-value=4.5e-08 Score=68.47 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=43.7
Q ss_pred ccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 113 LSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 113 ~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
...+|.+++.|+|.+.++++|+..++-..+++++++.|||||.+-++.
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 345789999999999999999987888899999999999999999874
No 148
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.41 E-value=4.5e-07 Score=66.75 Aligned_cols=89 Identities=24% Similarity=0.250 Sum_probs=52.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc-------------------------ccccceeeeeecCCcccccCCCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE-------------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~-------------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~i 125 (231)
.++.+|||+|||+|..+..++.... .....+.+...|-...........++||+|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 6678999999999988877763310 011222333333221110011234689999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
++..++..- +....+++.+.++|+++|.+++...
T Consensus 124 lasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 124 LASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 999999876 7889999999999999988777643
No 149
>PLN02366 spermidine synthase
Probab=98.40 E-value=9e-07 Score=70.87 Aligned_cols=87 Identities=24% Similarity=0.326 Sum_probs=53.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc---------------------------ccccceeeeeecCCcccccCCCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE---------------------------FREERVNAFVCNVVNDDLSRNVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~---------------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD 123 (231)
+++++||+||||.|..+..++.+.. +...+++++..|...-. ...++++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l--~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL--KNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH--hhccCCCCC
Confidence 5678999999999999998874311 11122333333321110 012356899
Q ss_pred EEEEeeeeeccCCC--CHHHHHHHHHHhcCCCeEEEEE
Q 045799 124 VVTLIFMLSAVSPK--KMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 124 ~ii~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+|++-..-.+.+.. -...+++.+++.|+|||++++.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 99985533322211 1357899999999999999763
No 150
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.40 E-value=8.9e-07 Score=74.90 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=58.0
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~ 127 (231)
..++.+|||+|||+|..+..++.... . ...++++|+++.++.. ..++++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~--~-~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~ 324 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQ--N-RGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILL 324 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhC--C-CcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEE
Confidence 45678999999999998877763211 0 1144555555544321 113467999996
Q ss_pred e------eeeec-------cCCC-------CHHHHHHHHHHhcCCCeEEEEEeccCC
Q 045799 128 I------FMLSA-------VSPK-------KMPLILQNIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 128 ~------~~l~~-------~~~~-------~~~~~l~~~~~~Lk~gG~l~i~~~~~~ 164 (231)
- .++.. ..++ ....++..+.+.|+|||+++.++.+..
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2 11211 1111 124689999999999999999875554
No 151
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.38 E-value=4.5e-07 Score=67.95 Aligned_cols=86 Identities=26% Similarity=0.356 Sum_probs=52.2
Q ss_pred CeEEEEcCCCCcchHHHhcCcc-----------------------ccccceeeeeecCCcccccCCCCCCCeeEEEEeee
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSE-----------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFM 130 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~-----------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~ 130 (231)
..+||||||.|.++..+|.... ..-.++.++.+|... .+..-++++++|.|+..+-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~-~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARE-LLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTT-HHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHH-HHhhcccCCchheEEEeCC
Confidence 3899999999999999982211 011233444444432 1111345689999998664
Q ss_pred eeccCC------CCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 131 LSAVSP------KKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 131 l~~~~~------~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
=-+... =-...++..++++|+|||.+.+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 332210 012589999999999999998874
No 152
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.32 E-value=1.2e-06 Score=78.10 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=53.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------------CCCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------------NVNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------------~~~~~~fD~ 124 (231)
.++.+|||+|||+|.++..++.... ..++.+|.++.++.. .-..++||+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga-----~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGA-----KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCC-----CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCE
Confidence 3478999999999999999883210 123444444333211 001468999
Q ss_pred EEEee-----------eeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 125 VTLIF-----------MLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 125 ii~~~-----------~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
|++.= ++... .+...++..+.++|+|||.+++.
T Consensus 612 IilDPP~f~~~~~~~~~~~~~--~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQ--RDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred EEECCCCCCCCCccchhhhHH--HHHHHHHHHHHHHcCCCCEEEEE
Confidence 99842 11111 34567888999999999999876
No 153
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=1.4e-05 Score=62.60 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=55.5
Q ss_pred CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHH
Q 045799 120 SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFL 199 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (231)
+.||+|+..+.+... .+.-..+..|+.+|||||+++=.-+....+... . .. ......-++.+++
T Consensus 258 ~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~-----~-g~--------~~~~siEls~edl 321 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWINLGPLLYHFEDT-----H-GV--------ENEMSIELSLEDL 321 (369)
T ss_pred CccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEeccceeeeccCC-----C-CC--------cccccccccHHHH
Confidence 579999999888766 788899999999999999997532221111110 0 00 0011123688999
Q ss_pred HHHHHHcCceEEEEE
Q 045799 200 STLFLEAGFSTVDIN 214 (231)
Q Consensus 200 ~~~l~~~Gf~~~~~~ 214 (231)
.++.+..||++++.+
T Consensus 322 ~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 322 KRVASHRGFEVEKER 336 (369)
T ss_pred HHHHHhcCcEEEEee
Confidence 999999999999876
No 154
>PRK03612 spermidine synthase; Provisional
Probab=98.32 E-value=4.6e-06 Score=71.83 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=53.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc------------------------------ccccceeeeeecCCcccccCCCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE------------------------------FREERVNAFVCNVVNDDLSRNVNPS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~------------------------------~~~~~~~~~~~D~~~~~~~~~~~~~ 120 (231)
+++++|||||||+|..+..++.+.. +.+.+++++..|..... ....+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l---~~~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWL---RKLAE 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHH---HhCCC
Confidence 4568999999999999988874311 01122333333332111 11246
Q ss_pred CeeEEEEeeeeeccCC---CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 121 SVDVVTLIFMLSAVSP---KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~---~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+||+|++.......+. --...+++.+++.|+|||++++.
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 8999999753322210 11246899999999999999875
No 155
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.29 E-value=9.8e-07 Score=71.05 Aligned_cols=78 Identities=17% Similarity=0.096 Sum_probs=50.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..++..... ...++++|.++.++.. ....++||+|++
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~---~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~ 155 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGE---KGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFV 155 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEE
Confidence 56789999999999999888743210 1124455555433210 112357999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
...+.++ ...+.+.|+|||.+++.
T Consensus 156 ~~g~~~i--------p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 156 TVGVDEV--------PETWFTQLKEGGRVIVP 179 (322)
T ss_pred CCchHHh--------HHHHHHhcCCCCEEEEE
Confidence 7655544 23467799999998875
No 156
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.25 E-value=3e-06 Score=66.77 Aligned_cols=92 Identities=12% Similarity=0.181 Sum_probs=57.2
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii 126 (231)
..++.+|||+|||+|..+..++.... +. -.++.+|++..++.. +...++||.|+
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~--~~-g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMK--NE-GAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcC--CC-CEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEE
Confidence 36788999999999999988873211 00 134555555443311 11235699999
Q ss_pred Eee------eeeccCC-------C-------CHHHHHHHHHHhcCCCeEEEEEeccCC
Q 045799 127 LIF------MLSAVSP-------K-------KMPLILQNIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 127 ~~~------~l~~~~~-------~-------~~~~~l~~~~~~Lk~gG~l~i~~~~~~ 164 (231)
+.- ++.+-|. + ....+|..+.+.|||||+++.++.+..
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 732 2222110 0 124589999999999999988765443
No 157
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.24 E-value=1.1e-05 Score=68.20 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=48.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc---------------------------CCCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------------------------RNVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~---------------------------~~~~~~~fD 123 (231)
.++.+|||+|||+|.++..++... ..++++|+++.++. .++.+++||
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~------~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD 369 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA------AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFD 369 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCC
Confidence 566899999999999999887321 13344444443331 123345788
Q ss_pred EEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+|++. -|.......++.+.+ ++|+++++++.
T Consensus 370 ~Vi~d-----PPr~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 370 KVLLD-----PPRAGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred EEEEC-----cCCcChHHHHHHHHh-cCCCeEEEEEe
Confidence 88762 233334456665655 58888888873
No 158
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.21 E-value=3.3e-06 Score=71.00 Aligned_cols=92 Identities=9% Similarity=0.100 Sum_probs=58.0
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------C-CCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------N-VNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~-~~~~~fD~i 125 (231)
..++.+|||+|||+|..+.+++.... ....++.+|++..++.. + +.+++||.|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~---~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMK---DQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC---CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEE
Confidence 46788999999999999988873211 01134455554443311 1 235689999
Q ss_pred EEee------eeeccC-------C-------CCHHHHHHHHHHhcCCCeEEEEEeccCC
Q 045799 126 TLIF------MLSAVS-------P-------KKMPLILQNIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 126 i~~~------~l~~~~-------~-------~~~~~~l~~~~~~Lk~gG~l~i~~~~~~ 164 (231)
++.. ++..-| + .....++..+.+.|||||.++.++.+..
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 9722 222111 0 0235678999999999999988765554
No 159
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.21 E-value=1.4e-05 Score=67.65 Aligned_cols=90 Identities=12% Similarity=0.179 Sum_probs=55.4
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-------------------------CCCCCCCeeE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------------------RNVNPSSVDV 124 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------------------~~~~~~~fD~ 124 (231)
..++.+|||+|||+|..+..++.... ....++++|++..++. ..++ ++||+
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~---~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~ 323 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLK---NTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDK 323 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCE
Confidence 45678999999999999988874210 0113444454433221 0112 68999
Q ss_pred EEEee------eeeccCC-------CC-------HHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 125 VTLIF------MLSAVSP-------KK-------MPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 125 ii~~~------~l~~~~~-------~~-------~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
|++.. ++.+-|. .+ ...++..+.+.|||||.++.++.+.
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 99742 2222210 01 2468999999999999998765333
No 160
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.21 E-value=3.8e-06 Score=64.17 Aligned_cols=86 Identities=20% Similarity=0.248 Sum_probs=55.4
Q ss_pred CeEEEEcCCCCcchHHHhcCcc----------------------cccc-ceeeeeecCCcccccCCCCCCCeeEEEEeee
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSE----------------------FREE-RVNAFVCNVVNDDLSRNVNPSSVDVVTLIFM 130 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~----------------------~~~~-~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~ 130 (231)
..+||||||.|.+...+|.... -..- ++.+++.|... -+..-+++++.|-|+..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~-~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVE-VLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHH-HHHhcCCCCCeeEEEEECC
Confidence 5899999999999999993211 0011 34444444431 1122345569999999774
Q ss_pred eeccC------CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 131 LSAVS------PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 131 l~~~~------~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
=-+-. +=-...+++.+.+.|+|||.+.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 32221 0012579999999999999999874
No 161
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.17 E-value=3.7e-06 Score=69.77 Aligned_cols=88 Identities=14% Similarity=0.037 Sum_probs=50.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCc------------------------cccccceeeeeecCCcccccCCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHS------------------------EFREERVNAFVCNVVNDDLSRNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~------------------------~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii 126 (231)
.++.+|||+|||+|.++...+... ......+.++..|+...........++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 357899999999999987755210 00001233444444321100011245899999
Q ss_pred EeeeeeccCC---------CCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 127 LIFMLSAVSP---------KKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 127 ~~~~l~~~~~---------~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+.=- ++.. .....++..+.++|+|||.++...
T Consensus 299 lDPP--~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPP--KFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCC--CCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7532 1111 134456667889999999998753
No 162
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.16 E-value=3.7e-06 Score=64.99 Aligned_cols=82 Identities=13% Similarity=0.088 Sum_probs=53.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------------CCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------------NVNPS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------------~~~~~ 120 (231)
.++.+|||+|||+|.-+.+++....- ..+++.+|..+..... ..+.+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~---~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPE---DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 56789999999999988777622110 1134444444332210 01246
Q ss_pred CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+||+|++-. +.+....++..+.++|+|||++++.+
T Consensus 144 ~fD~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 144 EFDFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CCCEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 899998743 22456678999999999999988764
No 163
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.13 E-value=9.3e-06 Score=64.22 Aligned_cols=90 Identities=12% Similarity=0.201 Sum_probs=63.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~ 127 (231)
-.+.+|||+|||+|.-+..+. ..+. ...+++++|.++.+... ..+....|+|++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~--~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~ 108 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAR--EVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIA 108 (274)
T ss_pred CCCceEEEecCChHHHHHHHH--HHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEE
Confidence 345799999999997554433 3333 33466778887766532 011234599999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
+++|..++.+....+++.+.+.+.+ ++++.+.+.+.
T Consensus 109 s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 109 SYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred ehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 9999999877778888888887765 88888776654
No 164
>PHA03412 putative methyltransferase; Provisional
Probab=98.11 E-value=5.8e-06 Score=63.05 Aligned_cols=83 Identities=7% Similarity=0.105 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------CCCCCCeeEEEEeeeeecc
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------NVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------~~~~~~fD~ii~~~~l~~~ 134 (231)
.+.+|||+|||+|.++..++...... ...++.++|+.+.++.. ...+++||+||++=-+.-.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~-~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYA-KPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKI 127 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccC-CCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCc
Confidence 36799999999999998776321110 12244555555443321 1124689999995433311
Q ss_pred CC----------CCHHHHHHHHHHhcCCCeE
Q 045799 135 SP----------KKMPLILQNIKAVLKPDGY 155 (231)
Q Consensus 135 ~~----------~~~~~~l~~~~~~Lk~gG~ 155 (231)
.. .-...++.++.+++++|+.
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 11 1245688999997777765
No 165
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.11 E-value=1.1e-05 Score=57.58 Aligned_cols=104 Identities=17% Similarity=0.148 Sum_probs=72.9
Q ss_pred hhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCc---------------------cccccceeeeeecCCc
Q 045799 52 HYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHS---------------------EFREERVNAFVCNVVN 110 (231)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~---------------------~~~~~~~~~~~~D~~~ 110 (231)
+++.+...... +..++.-|||+|.|||.++..+++.. .|. +.+++..|...
T Consensus 34 s~lA~~M~s~I------~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p--~~~ii~gda~~ 105 (194)
T COG3963 34 SILARKMASVI------DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP--GVNIINGDAFD 105 (194)
T ss_pred HHHHHHHHhcc------CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC--Cccccccchhh
Confidence 35566655444 34678899999999999999998331 111 22223333321
Q ss_pred ccc-cCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 111 DDL-SRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 111 ~~~-~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
..- ...+.+..||.||+.--+-.+|.....++++.+...|.+||.++.-.+++
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 110 01346678999999988888887788899999999999999998877664
No 166
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.10 E-value=6.4e-06 Score=63.38 Aligned_cols=83 Identities=12% Similarity=0.182 Sum_probs=56.8
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------------CCCCCCee
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------------NVNPSSVD 123 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------------~~~~~~fD 123 (231)
+..|||+|||+|..+..++.... .+.++.+|+++..+.. +...+++|
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~----~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~d 224 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLP----QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKID 224 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCC----CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCcee
Confidence 44799999999999999984432 4566677777655421 34568999
Q ss_pred EEEEeeeeeccCC--------------------------CCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 124 VVTLIFMLSAVSP--------------------------KKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 124 ~ii~~~~l~~~~~--------------------------~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
+++++= .|++. +....++.-+.|.|+|||.+.+...
T Consensus 225 llvsNP--PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 225 LLVSNP--PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred EEecCC--CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 999843 11111 1224567778899999999988643
No 167
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.05 E-value=1.8e-05 Score=58.10 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=45.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc---------------------cCCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL---------------------SRNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~---------------------~~~~~~~~fD~ii~~~ 129 (231)
.++.+|||+|||+|.++..++... .+++++|+++.+. ..++++.+||.|+++-
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~------~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~ 85 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA------ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNL 85 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC------CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECC
Confidence 556799999999999999998431 1233333332221 1123445689888754
Q ss_pred eeeccCCCCHHHHHHHHHHh--cCCCeEEEEE
Q 045799 130 MLSAVSPKKMPLILQNIKAV--LKPDGYILVC 159 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~--Lk~gG~l~i~ 159 (231)
..+ + ...++.++.+. +.++|.+++.
T Consensus 86 Py~-~----~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 86 PYN-I----STPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred Ccc-c----HHHHHHHHHhcCCCcceEEEEEE
Confidence 332 2 23444444433 3467777664
No 168
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.03 E-value=5.6e-07 Score=66.26 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=76.8
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------CCCCCCeeEEEEeeeeeccCCC
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------NVNPSSVDVVTLIFMLSAVSPK 137 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------~~~~~~fD~ii~~~~l~~~~~~ 137 (231)
.+.++||+|+|.|..+..++...+ .+...++|..|... .-.+-+||+|.|.+++.-. .
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe------evyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc--~ 183 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE------EVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRC--F 183 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH------HHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhh--c
Confidence 457899999999999988873211 11122222222110 1134579999999999877 7
Q ss_pred CHHHHHHHHHHhcCC-CeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEE
Q 045799 138 KMPLILQNIKAVLKP-DGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 138 ~~~~~l~~~~~~Lk~-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
++-.+++.+..+|+| +|.++++-..+..... .....+......-+....|. ..--....+-++|+++||.++.....
T Consensus 184 ~p~kLL~Di~~vl~psngrvivaLVLP~~hYV-E~N~~g~~~rPdn~Le~~Gr-~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 184 DPFKLLEDIHLVLAPSNGRVIVALVLPYMHYV-ETNTSGLPLRPDNLLENNGR-SFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred ChHHHHHHHHHHhccCCCcEEEEEEeccccee-ecCCCCCcCCchHHHHhcCc-cHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 889999999999999 8988876433321110 00101100000000001110 11011234678899999998775544
Q ss_pred e
Q 045799 217 L 217 (231)
Q Consensus 217 ~ 217 (231)
+
T Consensus 262 P 262 (288)
T KOG3987|consen 262 P 262 (288)
T ss_pred C
Confidence 3
No 169
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.02 E-value=1.6e-05 Score=60.86 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------CC-----CCCCeeEEEEeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------NV-----NPSSVDVVTLIFML 131 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------~~-----~~~~fD~ii~~~~l 131 (231)
.++..+||+|||||.++..++... .-.++++|++..++.. .+ .+-..|++.+--+|
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-----a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-----AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSF 148 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-----CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEE
Confidence 467899999999999999887541 1256777877644431 00 00111333222222
Q ss_pred eccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEE
Q 045799 132 SAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTV 211 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 211 (231)
.. ...++..+.++|++ |.+++.- .|.+.-.+ ......-...... .+..-.+.+...+.+.||++.
T Consensus 149 iS-----~~~~l~~i~~~l~~-~~~~~L~--KPqFE~~~-----~~~~~~giv~~~~--~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 149 IS-----LISILPELDLLLNP-NDLTLLF--KPQFEAGR-----EKKNKKGVVRDKE--AIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred ee-----hHhHHHHHHHHhCc-CeEEEEc--ChHhhhcH-----hhcCcCCeecCHH--HHHHHHHHHHHHHHcCCCeEe
Confidence 11 23367889999999 7776542 22211100 0010000000000 011234566777778899988
Q ss_pred EEEE
Q 045799 212 DINI 215 (231)
Q Consensus 212 ~~~~ 215 (231)
.+..
T Consensus 214 ~~~~ 217 (228)
T TIGR00478 214 KIIF 217 (228)
T ss_pred eEEE
Confidence 7665
No 170
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=98.00 E-value=0.0001 Score=60.58 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=61.8
Q ss_pred CCCCCCeeEEEEeeeeeccC--CC----------------------------------CHHHHHHHHHHhcCCCeEEEEE
Q 045799 116 NVNPSSVDVVTLIFMLSAVS--PK----------------------------------KMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 116 ~~~~~~fD~ii~~~~l~~~~--~~----------------------------------~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
-||+++.++++++..+|+++ |+ |+..+|+.-++=|.|||.+++.
T Consensus 157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 36889999999999999985 11 1334566666779999999998
Q ss_pred eccCCchhhh-h----------hhcc-ccccccceEEe----CCCeEEEeeCHHHHHHHHHHcC-ceEEEEEEEe
Q 045799 160 DYAIGDFAQV-K----------LLDR-NQMIGDSFYVR----GDGTCSFYFSEDFLSTLFLEAG-FSTVDINIHL 217 (231)
Q Consensus 160 ~~~~~~~~~~-~----------~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~G-f~~~~~~~~~ 217 (231)
-.+..+.... . +... .....+..... .-....++.+.+++++.+++.| |++.+++.+.
T Consensus 237 ~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~ 311 (386)
T PLN02668 237 CLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFK 311 (386)
T ss_pred EecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEee
Confidence 7666431100 0 0000 00001111000 0011234678999999999887 7888887754
No 171
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.94 E-value=4.9e-05 Score=56.30 Aligned_cols=74 Identities=28% Similarity=0.365 Sum_probs=51.7
Q ss_pred eEEEEcCCCCcchHHHhcCc-----------------------cccccceeeeeecCCcccccCCCCCCCeeEEEEeeee
Q 045799 75 VVLEVGCGAGNTIFPLVSHS-----------------------EFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFML 131 (231)
Q Consensus 75 ~iLdvGcG~G~~~~~l~~~~-----------------------~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l 131 (231)
+++|||+|.|-.+..++-.. ...-.++.+....+.. .....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-----~~~~~~fd~v~aRAv- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-----PEYRESFDVVTARAV- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-----TTTTT-EEEEEEESS-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-----cccCCCccEEEeehh-
Confidence 89999999999999998100 0001234444444432 235689999999775
Q ss_pred eccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 132 SAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
..+..++.-+...+++||.+++.
T Consensus 125 -----~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 -----APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp -----SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred -----cCHHHHHHHHHHhcCCCCEEEEE
Confidence 55778999999999999999886
No 172
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.91 E-value=3.4e-05 Score=58.37 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=57.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------------CCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------------NVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------------~~~~~~fD 123 (231)
...++|||||++.|.-+.+|+..... ..+.+.+|..++.... ....++||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~---~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPD---DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCC---CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCcc
Confidence 57899999999999999999833221 1133344433322210 13468999
Q ss_pred EEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+|+.-. ...+...++..+.++|+|||++++-....
T Consensus 135 liFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 135 LVFIDA-----DKADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred EEEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 998733 23567889999999999999998865333
No 173
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.90 E-value=7.9e-05 Score=62.98 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=19.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~ 92 (231)
.++.+|||+|||+|.++..++.
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~ 312 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAK 312 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHH
Confidence 4568999999999999999873
No 174
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.90 E-value=3.2e-05 Score=58.38 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=55.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------------CCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------------NVNPS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------------~~~~~ 120 (231)
....+||||||++|.-+.+++.... .+.+++.+|..+..... .-+.+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~---~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALP---EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTST---TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhc---ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCC
Confidence 4568999999999999999983211 01233444443322110 11235
Q ss_pred CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
+||+|+.-. +..+....+..+.++|+|||++++-+..
T Consensus 121 ~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 121 QFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp SEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred ceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEEcccc
Confidence 899999854 2356778889999999999999886433
No 175
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.88 E-value=6.5e-05 Score=55.71 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=52.4
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------CCCC--CCCeeEEEEee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------RNVN--PSSVDVVTLIF 129 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------~~~~--~~~fD~ii~~~ 129 (231)
.+.++||+||++|.++..++... .....++++|+...... ..+. .+.+|+|++-.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~---~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~ 99 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRG---GPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDM 99 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTST---TTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE--
T ss_pred cccEEEEcCCcccceeeeeeecc---cccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceecccc
Confidence 56899999999999999998554 12346677777654110 0112 26999999976
Q ss_pred eeeccCC---------CCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 130 MLSAVSP---------KKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 130 ~l~~~~~---------~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
....-.. +-....+.-+...|+|||.+++..+..
T Consensus 100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 100 APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp -----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 3322210 111234445567799999998875443
No 176
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.87 E-value=3e-05 Score=66.56 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=55.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcc-------------------------cccCCCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVND-------------------------DLSRNVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~-------------------------~~~~~~~~~~fD~i 125 (231)
.....+||||||.|.++..+|.... ...++++|+... .+...++++++|.|
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p----~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNP----DALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCC----CCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEE
Confidence 4567899999999999999983211 122333333221 11224577889999
Q ss_pred EEeeeeeccC------CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 126 TLIFMLSAVS------PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 126 i~~~~l~~~~------~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+..+.=-|.. +=-...+++.+++.|+|||.+.+.+
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 9866433221 0012578999999999999998863
No 177
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.87 E-value=9.9e-05 Score=60.03 Aligned_cols=147 Identities=16% Similarity=0.250 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcC------cc------ccccceeeeeecCCcccccC-----------------------
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSH------SE------FREERVNAFVCNVVNDDLSR----------------------- 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~------~~------~~~~~~~~~~~D~~~~~~~~----------------------- 115 (231)
+...+|.|+||.+|.++..+... .. -....++++--|+-..++..
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 56679999999999999888711 01 22345677777776555421
Q ss_pred -------CCCCCCeeEEEEeeeeeccC--CCC-----------------------------------HHHHHHHHHHhcC
Q 045799 116 -------NVNPSSVDVVTLIFMLSAVS--PKK-----------------------------------MPLILQNIKAVLK 151 (231)
Q Consensus 116 -------~~~~~~fD~ii~~~~l~~~~--~~~-----------------------------------~~~~l~~~~~~Lk 151 (231)
-+|+++.|+++++..+|+++ |+. +..+|+.=++=|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 36889999999999999874 111 1345556667789
Q ss_pred CCeEEEEEeccCCchhhhhh------hcc----ccccccceEEeC--C--CeEEEeeCHHHHHHHHHHcC-ceEEEEEEE
Q 045799 152 PDGYILVCDYAIGDFAQVKL------LDR----NQMIGDSFYVRG--D--GTCSFYFSEDFLSTLFLEAG-FSTVDINIH 216 (231)
Q Consensus 152 ~gG~l~i~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~--~--~~~~~~~~~~~l~~~l~~~G-f~~~~~~~~ 216 (231)
|||++++.-.+..+...... ... .....++..... + ....++.+.+++...+++.| |++..++..
T Consensus 175 ~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~ 254 (334)
T PF03492_consen 175 PGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELF 254 (334)
T ss_dssp EEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEE
T ss_pred cCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEE
Confidence 99999998766655211000 000 000111110000 0 11134678999999998876 888777766
Q ss_pred e
Q 045799 217 L 217 (231)
Q Consensus 217 ~ 217 (231)
.
T Consensus 255 ~ 255 (334)
T PF03492_consen 255 E 255 (334)
T ss_dssp E
T ss_pred e
Confidence 5
No 178
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.86 E-value=0.00012 Score=59.22 Aligned_cols=36 Identities=11% Similarity=0.265 Sum_probs=25.5
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
++.+|||+|||+|.++..++.. ..+++++|+++.++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~------~~~V~gvD~s~~av 208 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP------GMQLTGIEISAEAI 208 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc------CCEEEEEeCCHHHH
Confidence 4689999999999999998843 12445555554443
No 179
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.00022 Score=51.74 Aligned_cols=84 Identities=24% Similarity=0.387 Sum_probs=51.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc---------------------CCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------------------RNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~---------------------~~~~~~~fD~ii~~~ 129 (231)
....-+||||||+|..+.+|++... ..+.++..|+.+.... ..+..++.|+++.+=
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~---~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIG---PQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNP 118 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcC---CCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECC
Confidence 3467899999999999998883322 2233444454443322 133447788877643
Q ss_pred eeeccC---------------------CCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 130 MLSAVS---------------------PKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 130 ~l~~~~---------------------~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.++| ++-.+.++..+-.+|.|.|++++.
T Consensus 119 --PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 119 --PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred --CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 1222 111356667777888889988876
No 180
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=3.4e-05 Score=57.15 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=50.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhc-----------------------------------CccccccceeeeeecCCcccccC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVS-----------------------------------HSEFREERVNAFVCNVVNDDLSR 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~-----------------------------------~~~~~~~~~~~~~~D~~~~~~~~ 115 (231)
.++.+.||+|+|+|.++..++. ...+....+.++..|....
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g---- 156 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG---- 156 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc----
Confidence 8899999999999999887760 0111122333333343322
Q ss_pred CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 116 NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 116 ~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
..+..+||.|.+...- ..+-+++...|++||.+++.
T Consensus 157 ~~e~a~YDaIhvGAaa--------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 157 YAEQAPYDAIHVGAAA--------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCccCCcceEEEccCc--------cccHHHHHHhhccCCeEEEe
Confidence 2245799999997532 23456677889999999885
No 181
>PLN02476 O-methyltransferase
Probab=97.84 E-value=3.7e-05 Score=60.49 Aligned_cols=86 Identities=15% Similarity=0.069 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcccc-------------------------ccceeeeeecCCcccccC--CCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFR-------------------------EERVNAFVCNVVNDDLSR--NVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~-------------------------~~~~~~~~~D~~~~~~~~--~~~~~~fD 123 (231)
.+.++||||||++|..+.+++....-. ...+++...|.....-.. .-..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 567899999999999999887311000 012223333322110000 00135899
Q ss_pred EEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
+|+.-. +..+....+..+.++|+|||++++-+.
T Consensus 197 ~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 197 FAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 998844 235667889999999999999988643
No 182
>PLN02672 methionine S-methyltransferase
Probab=97.82 E-value=7.3e-05 Score=68.84 Aligned_cols=19 Identities=37% Similarity=0.690 Sum_probs=17.4
Q ss_pred CCeEEEEcCCCCcchHHHh
Q 045799 73 PKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~ 91 (231)
+.+|||+|||+|..+..++
T Consensus 119 ~~~VLDlG~GSG~Iai~La 137 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIA 137 (1082)
T ss_pred CCEEEEEecchHHHHHHHH
Confidence 4689999999999999987
No 183
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.80 E-value=2.5e-05 Score=63.81 Aligned_cols=87 Identities=20% Similarity=0.307 Sum_probs=64.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc-----------------------ccccceeeeeecCCcccccCCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE-----------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~-----------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~ 127 (231)
.++..++|+|||-|.....++.... +-.....++..|+- ..+++++.||.+.+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~----~~~fedn~fd~v~~ 184 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFG----KMPFEDNTFDGVRF 184 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhh----cCCCCccccCcEEE
Confidence 4556899999999999988872110 00111112233332 23688999999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
..+..|. .+...+++++++.++|||++++.++..
T Consensus 185 ld~~~~~--~~~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 185 LEVVCHA--PDLEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred EeecccC--CcHHHHHHHHhcccCCCceEEeHHHHH
Confidence 9999999 789999999999999999999876544
No 184
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.79 E-value=2.7e-05 Score=62.20 Aligned_cols=84 Identities=23% Similarity=0.258 Sum_probs=49.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc----------------------ccccceeeeeecCCcccccCCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE----------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~----------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~ 128 (231)
-+++.|||||||||.++...+.... .-...+.++...+. ++ .+|-++.|+|++-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvE--di--~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVE--DI--ELPVEKVDIIVSE 134 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceE--EE--ecCccceeEEeeh
Confidence 4678999999999999987762210 00112222333222 11 2346899999996
Q ss_pred eeeeccC-CCCHHHHHHHHHHhcCCCeEEEE
Q 045799 129 FMLSAVS-PKKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 129 ~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
++=.++- +.=+..++-.--+.|+|||.++-
T Consensus 135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 135 WMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 5422221 11234455555689999999863
No 185
>PRK00536 speE spermidine synthase; Provisional
Probab=97.63 E-value=0.00018 Score=56.20 Aligned_cols=76 Identities=16% Similarity=0.091 Sum_probs=54.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CC---CCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NV---NPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~---~~~~fD~ii 126 (231)
+++++||=||.|.|..++.++.+.. ++..+|+.+..++. .+ ..++||+||
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~------~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT------HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC------eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEE
Confidence 6779999999999999999986631 44444544333211 11 236899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.-.. ....+++.+++.|+|||+++.-
T Consensus 145 vDs~-------~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 145 CLQE-------PDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EcCC-------CChHHHHHHHHhcCCCcEEEEC
Confidence 8542 2356889999999999999874
No 186
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.60 E-value=0.00041 Score=55.91 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=16.9
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
..+.++||||||+|.....++
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa 133 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIG 133 (321)
T ss_pred CCCceEEEecCCccHHHHHHH
Confidence 356899999999997776665
No 187
>PLN02823 spermine synthase
Probab=97.51 E-value=0.00029 Score=57.22 Aligned_cols=85 Identities=21% Similarity=0.314 Sum_probs=51.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc---------------------------ccccceeeeeecCCcccccCCCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE---------------------------FREERVNAFVCNVVNDDLSRNVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~---------------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD 123 (231)
+.+.+||.||+|.|..+..++.... +.+.+++++..|...-. ....++||
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~yD 178 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEKFD 178 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCCcc
Confidence 4567999999999999988873211 11223333333332111 11346899
Q ss_pred EEEEeeeeecc---CCC--CHHHHHH-HHHHhcCCCeEEEEE
Q 045799 124 VVTLIFMLSAV---SPK--KMPLILQ-NIKAVLKPDGYILVC 159 (231)
Q Consensus 124 ~ii~~~~l~~~---~~~--~~~~~l~-~~~~~Lk~gG~l~i~ 159 (231)
+|++-.. .-. +.. -...+++ .+++.|+|||++++.
T Consensus 179 vIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 179 VIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9998531 110 000 1346787 899999999998764
No 188
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.46 E-value=0.00022 Score=60.19 Aligned_cols=79 Identities=25% Similarity=0.423 Sum_probs=46.2
Q ss_pred CCeEEEEcCCCCcchHHHhcCccc----------------------------cccceeeeeecCCcccccCCCCCCCeeE
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEF----------------------------REERVNAFVCNVVNDDLSRNVNPSSVDV 124 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~----------------------------~~~~~~~~~~D~~~~~~~~~~~~~~fD~ 124 (231)
+..|||||||+|.++...+..... -...++++..|...-.. .++.|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-----pekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-----PEKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-----SS-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-----CCceeE
Confidence 578999999999987655411100 01244555555543222 358999
Q ss_pred EEEeeeeecc-CCCCHHHHHHHHHHhcCCCeEEE
Q 045799 125 VTLIFMLSAV-SPKKMPLILQNIKAVLKPDGYIL 157 (231)
Q Consensus 125 ii~~~~l~~~-~~~~~~~~l~~~~~~Lk~gG~l~ 157 (231)
||+-.+ ..+ ..+-...+|..+.+.|||||..+
T Consensus 262 IVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 262 IVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 999442 222 22455678888899999999976
No 189
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00056 Score=57.15 Aligned_cols=118 Identities=15% Similarity=0.183 Sum_probs=71.7
Q ss_pred HHhhHHHHHHhccCCcccchhhhHHhhc---ccccCCCCCCCCCC-CeEEEEcCCCCcchHHHhcCcc------------
Q 045799 32 AKKYWDGFYKRHKNKFFKDRHYLEKDWG---NYFSDDSCCPNGNP-KVVLEVGCGAGNTIFPLVSHSE------------ 95 (231)
Q Consensus 32 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~iLdvGcG~G~~~~~l~~~~~------------ 95 (231)
...||+.++.... .....|+.+.+. .++..+ .+. .++|.+|||...++..+-....
T Consensus 12 s~~~wd~rf~~rg---~~~~ewY~~~l~l~~~i~~~~-----~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~ 83 (482)
T KOG2352|consen 12 SVVYWDKRFQPRG---SDPFEWYGALLSLSGSIMKYL-----SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVV 83 (482)
T ss_pred cchhhhhhccccC---CChHHHHHHHHHHHHHHHHhh-----chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHH
Confidence 3468887653332 233446655542 122222 333 4999999999988877752110
Q ss_pred ---------ccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCH--------HHHHHHHHHhcCCCeEEEE
Q 045799 96 ---------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKM--------PLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 96 ---------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~--------~~~l~~~~~~Lk~gG~l~i 158 (231)
.....++....|.. ...|++++||+|+....++++-..+. ...+.++.++|++||+++.
T Consensus 84 V~~m~~~~~~~~~~~~~~~~d~~----~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 84 VAAMQVRNAKERPEMQMVEMDMD----QLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred HHHHHhccccCCcceEEEEecch----hccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 11112222222222 22678999999999999998732221 2457899999999999887
Q ss_pred Eec
Q 045799 159 CDY 161 (231)
Q Consensus 159 ~~~ 161 (231)
...
T Consensus 160 vtl 162 (482)
T KOG2352|consen 160 VTL 162 (482)
T ss_pred EEe
Confidence 765
No 190
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.40 E-value=0.00028 Score=54.75 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=52.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------------CC-----CC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------------NV-----NP 119 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------------~~-----~~ 119 (231)
.+.++|||||+++|.-+.+++.... ...+++.+|..+..... .+ ..
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~---~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALP---EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCC---CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccC
Confidence 4568999999999999888873211 01133444443221110 00 12
Q ss_pred CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 120 SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++||+|+.-.- .......+..+.++|+|||++++-+
T Consensus 155 ~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 155 GTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred CcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 68999988542 2456678888899999999988753
No 191
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.0052 Score=45.17 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=25.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
-.+..|+|+|||||.++...+.... ..+.++|+.++.+
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa-----~~V~~vdiD~~a~ 81 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGA-----SRVLAVDIDPEAL 81 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCC-----cEEEEEecCHHHH
Confidence 4567899999999999987763321 1345555554443
No 192
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.35 E-value=0.00076 Score=53.36 Aligned_cols=84 Identities=26% Similarity=0.336 Sum_probs=52.2
Q ss_pred CCCeEEEEcCCCCcchHHHhcCcccc---------------------------ccceeeeeecCCcccccCCCCCCCeeE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFR---------------------------EERVNAFVCNVVNDDLSRNVNPSSVDV 124 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~---------------------------~~~~~~~~~D~~~~~~~~~~~~~~fD~ 124 (231)
..++||-||.|.|.+++.++.+...+ ..+++++..|.-+-. .. ..++||+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v--~~-~~~~fDv 152 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL--RD-CEEKFDV 152 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH--Hh-CCCcCCE
Confidence 33699999999999999999543211 122222222221100 01 2238999
Q ss_pred EEEeeeeeccCC---CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 125 VTLIFMLSAVSP---KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 125 ii~~~~l~~~~~---~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
|++-.+=. ..+ --...+++.++++|+++|+++.-
T Consensus 153 Ii~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 99854322 111 01278999999999999999886
No 193
>PRK04148 hypothetical protein; Provisional
Probab=97.34 E-value=0.00091 Score=46.64 Aligned_cols=80 Identities=11% Similarity=0.202 Sum_probs=51.5
Q ss_pred CCCCeEEEEcCCCCc-chHHHhcCccccccceeeeeecCCcccccC---------------C-CC-CCCeeEEEEeeeee
Q 045799 71 GNPKVVLEVGCGAGN-TIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------N-VN-PSSVDVVTLIFMLS 132 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~-~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------~-~~-~~~fD~ii~~~~l~ 132 (231)
.++.++||||||+|. ++..|+.. +..++++|+++..... + +. -+.+|+|.+.-
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~------G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysir--- 85 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES------GFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR--- 85 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC---
Confidence 345789999999996 77777633 4466777776554321 0 00 14678887744
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
|+.+++..+.++++.+. .-+++...+.
T Consensus 86 --pp~el~~~~~~la~~~~--~~~~i~~l~~ 112 (134)
T PRK04148 86 --PPRDLQPFILELAKKIN--VPLIIKPLSG 112 (134)
T ss_pred --CCHHHHHHHHHHHHHcC--CCEEEEcCCC
Confidence 66788888888887554 4477764444
No 194
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.33 E-value=0.0036 Score=46.12 Aligned_cols=126 Identities=16% Similarity=0.111 Sum_probs=76.1
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCcc-------ccc-----------------------cceeeeeecCCcccccCCCC
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSE-------FRE-----------------------ERVNAFVCNVVNDDLSRNVN 118 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~-------~~~-----------------------~~~~~~~~D~~~~~~~~~~~ 118 (231)
..+++.+|+|+=.|.|.+++.+..-.. |.. .+.+.++-++. . -.+
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~----A-~~~ 119 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLV----A-LGA 119 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCccc----c-cCC
Confidence 358899999999999999988871100 000 00111111110 0 114
Q ss_pred CCCeeEEEEeeeeec-----cCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEe
Q 045799 119 PSSVDVVTLIFMLSA-----VSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFY 193 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~-----~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (231)
.+..|+++....-|- +.......+...+++.|||||++.+.|+....-... .+.....+
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~----------------~dt~~~~r 183 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGL----------------SDTITLHR 183 (238)
T ss_pred CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCCh----------------hhhhhhcc
Confidence 456677666332221 224567789999999999999999987655321110 00111235
Q ss_pred eCHHHHHHHHHHcCceEEEEEE
Q 045799 194 FSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 194 ~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
.+...++...+.+||.+.-...
T Consensus 184 i~~a~V~a~veaaGFkl~aeS~ 205 (238)
T COG4798 184 IDPAVVIAEVEAAGFKLEAESE 205 (238)
T ss_pred cChHHHHHHHHhhcceeeeeeh
Confidence 7888999999999999876543
No 195
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00036 Score=52.07 Aligned_cols=88 Identities=17% Similarity=0.159 Sum_probs=58.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcccc-------------------ccceeeeeecCCcccccCCCCCCCeeEEEEeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFR-------------------EERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFML 131 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~-------------------~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l 131 (231)
.++.+||+||-|-|.....+....... ...-+++.+.-.=++....+++++||-|+.-..-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 778999999999998777765221110 0000111111111111225688999999986665
Q ss_pred eccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 132 SAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++. ++...+.+.+.++|||+|++-...
T Consensus 180 e~y--Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 180 ELY--EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hHH--HHHHHHHHHHhhhcCCCceEEEec
Confidence 777 889999999999999999987653
No 196
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.0011 Score=53.48 Aligned_cols=85 Identities=18% Similarity=0.228 Sum_probs=55.2
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc------------------------cCCCCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL------------------------SRNVNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~------------------------~~~~~~~~fD~i 125 (231)
..+|..|||-=||||.++....-. ++.++++|+...|. ..+++++++|.|
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~------G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaI 268 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM------GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAI 268 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc------CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceE
Confidence 377889999999999988776511 23334444433332 225666789999
Q ss_pred EEeeee---eccCCCC----HHHHHHHHHHhcCCCeEEEEEe
Q 045799 126 TLIFML---SAVSPKK----MPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 126 i~~~~l---~~~~~~~----~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++---- .-..... ...+++.+.+.|++||++++..
T Consensus 269 atDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 269 ATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred EecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 982110 0011111 5688999999999999998863
No 197
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.32 E-value=0.0034 Score=47.53 Aligned_cols=77 Identities=25% Similarity=0.365 Sum_probs=48.9
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc---------------------CCCCC-CC-eeEEEEee
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------------------RNVNP-SS-VDVVTLIF 129 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~---------------------~~~~~-~~-fD~ii~~~ 129 (231)
+.+++|||+|.|-.+..++ ..++ ..+++-+|....-.. ..+.. .. ||+|.+..
T Consensus 68 ~~~~~DIGSGaGfPGipLA--I~~p--~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA--IAFP--DLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHH--Hhcc--CCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeeh
Confidence 6899999999999999988 1111 112222222211100 01121 23 99999977
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+ .....+..-+...+++||.+++.
T Consensus 144 v------a~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 144 V------ASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred c------cchHHHHHHHHHhcccCCcchhh
Confidence 5 45677888889999999988654
No 198
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.31 E-value=0.0007 Score=50.92 Aligned_cols=85 Identities=12% Similarity=0.040 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCCCcchHHHhcCcc----------------------ccccceeeeeecCCcccccCCCCCCCeeEEEEee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSE----------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF 129 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~----------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~ 129 (231)
++.++||+|||+|.++..+++... ....++.++..|+.... +...++||+|++.=
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l---~~~~~~fDlV~~DP 129 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL---AQPGTPHNVVFVDP 129 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH---hhcCCCceEEEECC
Confidence 467999999999999986542110 00012344444443211 11234699998743
Q ss_pred eeeccCCCCHHHHHHHHHHh--cCCCeEEEEEecc
Q 045799 130 MLSAVSPKKMPLILQNIKAV--LKPDGYILVCDYA 162 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~--Lk~gG~l~i~~~~ 162 (231)
-+. ..-...+++.+... |+|+|++++....
T Consensus 130 Py~---~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 130 PFR---KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCC---CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 311 02233455555543 7889988887543
No 199
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.30 E-value=0.0022 Score=53.98 Aligned_cols=87 Identities=21% Similarity=0.368 Sum_probs=59.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCc--------------ccccC--CCCCCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVN--------------DDLSR--NVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~--------------~~~~~--~~~~~~fD~ii~~~~l~~~ 134 (231)
..-..|+|...|.|.++..|....-+ .++++-.+-.. -+..+ +.-+++||+|.+..+|...
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~~VW---VMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~ 440 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDDPVW---VMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLY 440 (506)
T ss_pred cceeeeeeecccccHHHHHhccCCce---EEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhh
Confidence 34467999999999999998743211 11111110000 00011 2235899999999998876
Q ss_pred C-CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 135 S-PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 135 ~-~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
. +-++..++-++-|+|+|+|.++|.|
T Consensus 441 ~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 441 KDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred cccccHHHHHHHhHhhcCCCceEEEec
Confidence 4 5577899999999999999999975
No 200
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0018 Score=48.43 Aligned_cols=95 Identities=19% Similarity=0.163 Sum_probs=54.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcccc-------------ccceeeeeecCCcccccC----CCCCCCeeEEEEeee---
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFR-------------EERVNAFVCNVVNDDLSR----NVNPSSVDVVTLIFM--- 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~-------------~~~~~~~~~D~~~~~~~~----~~~~~~fD~ii~~~~--- 130 (231)
.++..|+|+|+.+|.++..++....-. ..++..+..|+..+.... .+....+|+|++-..
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~ 123 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNT 123 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCc
Confidence 778999999999999998776322110 112333333333322111 234456799997331
Q ss_pred -----eeccCCCC-HHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 131 -----LSAVSPKK-MPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 131 -----l~~~~~~~-~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
.+|.--.. -..++.-+...|+|||.+++..+...+
T Consensus 124 ~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 124 SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 12220000 134556667899999999988655543
No 201
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0057 Score=46.62 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=75.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++..+||+|+.||.++..++.... -.++++|+...++.- .+. +..|++++-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA-----k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA-----KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC-----cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 7789999999999999998884421 145666666544321 111 256777775
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
-.| -....++..+..++++++.++..--+.-... ...+...=...... .+-.-...+.+.+++.||
T Consensus 152 vSF-----ISL~~iLp~l~~l~~~~~~~v~LvKPQFEag-------r~~v~kkGvv~d~~--~~~~v~~~i~~~~~~~g~ 217 (245)
T COG1189 152 VSF-----ISLKLILPALLLLLKDGGDLVLLVKPQFEAG-------REQVGKKGVVRDPK--LHAEVLSKIENFAKELGF 217 (245)
T ss_pred eeh-----hhHHHHHHHHHHhcCCCceEEEEecchhhhh-------hhhcCcCceecCcc--hHHHHHHHHHHHHhhcCc
Confidence 543 2457799999999999998877521111111 11111110011110 011234678888889999
Q ss_pred eEEEEEEE
Q 045799 209 STVDINIH 216 (231)
Q Consensus 209 ~~~~~~~~ 216 (231)
.+..+...
T Consensus 218 ~~~gl~~S 225 (245)
T COG1189 218 QVKGLIKS 225 (245)
T ss_pred EEeeeEcc
Confidence 99887653
No 202
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.20 E-value=0.00053 Score=53.87 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=19.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~ 92 (231)
.++..|||||||+|.++..++.
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~ 49 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAK 49 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHH
Confidence 5678999999999999999983
No 203
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.19 E-value=0.00076 Score=52.53 Aligned_cols=86 Identities=26% Similarity=0.288 Sum_probs=51.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------------CCCCC-C
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------------NVNPS-S 121 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------------~~~~~-~ 121 (231)
+++++||-||.|.|..+..++.+... . ++..+|+.+..++. .-..+ +
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~--~--~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPV--E--SITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEK 150 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT---S--EEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCc--c--eEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCc
Confidence 56899999999999999999844311 1 22233332222110 01233 8
Q ss_pred eeEEEEeeeeeccCCC--CHHHHHHHHHHhcCCCeEEEEEe
Q 045799 122 VDVVTLIFMLSAVSPK--KMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 122 fD~ii~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
||+|+.-..-...+.. -...+++.+++.|+|||++++..
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 151 YDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9999984432211111 13689999999999999998864
No 204
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.00045 Score=55.32 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=36.1
Q ss_pred CCCeeEEEEeeeeeccC-CCCHHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 119 PSSVDVVTLIFMLSAVS-PKKMPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
...|++|+..+-|-+.. +......+..+..++.|||.++|.+.+.+.
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 36788888877665553 334556899999999999999999876653
No 205
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.00022 Score=50.70 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=33.4
Q ss_pred CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
...+||+|++..++-.- +-...+...|+++|+|.|..++..
T Consensus 100 eq~tFDiIlaADClFfd--E~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 100 EQHTFDIILAADCLFFD--EHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred hhCcccEEEeccchhHH--HHHHHHHHHHHHHhCcccceeEec
Confidence 34699999999987554 567788999999999999977753
No 206
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.06 E-value=0.0017 Score=53.79 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCCCcchHHHhc
Q 045799 72 NPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~ 92 (231)
++.+|||+|||+|.++..++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~ 253 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAG 253 (374)
T ss_pred CCCEEEEccCCccHHHHHHhh
Confidence 457999999999999998883
No 207
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.06 E-value=0.002 Score=50.49 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=19.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~ 92 (231)
.++.+|||||||+|.++..++.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~ 49 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLK 49 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHH
Confidence 5678999999999999999983
No 208
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.04 E-value=0.0011 Score=52.83 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=46.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCc-------------cc---------cccceeeeeecCCcccccCCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHS-------------EF---------REERVNAFVCNVVNDDLSRNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~-------------~~---------~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~ 128 (231)
-+++.|||||||+|.++...+... .| -..++.++-..+. +++ ..++.|+||+-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiE--die---LPEk~DviISE 250 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIE--DIE---LPEKVDVIISE 250 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccc--ccc---CchhccEEEec
Confidence 457889999999998886655110 00 0123333333332 121 24689999984
Q ss_pred eeeecc-CCCCHHHHHHHHHHhcCCCeEEEE
Q 045799 129 FMLSAV-SPKKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 129 ~~l~~~-~~~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
-+ .++ -.+.....+-.+++.|+|.|..+-
T Consensus 251 PM-G~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 251 PM-GYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred cc-hhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 32 222 113334444556799999999763
No 209
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.04 E-value=0.001 Score=54.98 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=57.9
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccce-eeeeecCCcccccC-----------------------------CCCCCC
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERV-NAFVCNVVNDDLSR-----------------------------NVNPSS 121 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~-~~~~~D~~~~~~~~-----------------------------~~~~~~ 121 (231)
++++||++=|=||.++.+.+.. +. +++.+|.++..+.- .-...+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g------GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~ 290 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG------GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEK 290 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc------CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCc
Confidence 3899999999999999888733 22 56677777655421 113459
Q ss_pred eeEEEEe---------eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 122 VDVVTLI---------FMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 122 fD~ii~~---------~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
||+|++- ..+.-. .+...++..+.++|+|||.++++.
T Consensus 291 fDlIilDPPsF~r~k~~~~~~~--rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 291 FDLIILDPPSFARSKKQEFSAQ--RDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred ccEEEECCcccccCcccchhHH--HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9999981 111112 456788999999999999999874
No 210
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.01 E-value=0.0055 Score=45.24 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=54.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcC-------cccc--------------ccceeeeeecCCcccccCCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSH-------SEFR--------------EERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~-------~~~~--------------~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~ 129 (231)
..+++|||+|+|+|..+...+.. ..+. ...+.++..|+. ..+..||+++...
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~-------g~~~~~Dl~LagD 150 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLI-------GSPPAFDLLLAGD 150 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeecccc-------CCCcceeEEEeec
Confidence 56899999999999888766611 0000 112222233332 2567899999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchh
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFA 167 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~ 167 (231)
++..= +.-.+++.-..++...|-.+++-++....+.
T Consensus 151 lfy~~--~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lp 186 (218)
T COG3897 151 LFYNH--TEADRLIPWKDRLAEAGAAVLVGDPGRAYLP 186 (218)
T ss_pred eecCc--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCc
Confidence 86533 5566777755555556666666666665543
No 211
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.01 E-value=0.00067 Score=53.74 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=26.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
.++.+|||||||+|.++..++... .+++++|+++.++
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~------~~v~avE~d~~~~ 77 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA------AKVTAVEIDRDLA 77 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC------CcEEEEECCHHHH
Confidence 567899999999999999988431 1445555554443
No 212
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.98 E-value=0.0028 Score=51.11 Aligned_cols=71 Identities=13% Similarity=0.057 Sum_probs=52.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------CCC-CCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------NVN-PSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------~~~-~~~fD~ii~~~~l~~~ 134 (231)
.++..+|||||++|.++..++.. +..++++|..+..... ..+ .+.+|.++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r------G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv---- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR------GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV---- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc------CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc----
Confidence 67899999999999999988855 4477888865432110 112 567899998443
Q ss_pred CCCCHHHHHHHHHHhcCCC
Q 045799 135 SPKKMPLILQNIKAVLKPD 153 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~g 153 (231)
+.+.++++.+.+.|..|
T Consensus 280 --e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 --EKPARVAELMAQWLVNG 296 (357)
T ss_pred --cCHHHHHHHHHHHHhcC
Confidence 67888999999999766
No 213
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.95 E-value=0.0054 Score=43.77 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=34.2
Q ss_pred CCCC-CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 116 NVNP-SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 116 ~~~~-~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
++.. ..||++.....+++. . ....+.++.+.++|+|.+++.......
T Consensus 113 ~~~~~~~~d~~~~~~~~~~~--~-~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 113 PFEDSASFDLVISLLVLHLL--P-PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred CCCCCCceeEEeeeeehhcC--C-HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4444 489999444444444 2 888999999999999999988665543
No 214
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.85 E-value=0.0068 Score=45.26 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=18.5
Q ss_pred CCCeEEEEcCCCCcchHHHhc
Q 045799 72 NPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~ 92 (231)
.+.++||++||+|.++..+++
T Consensus 49 ~g~~vLDLfaGsG~lglea~s 69 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALS 69 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHh
Confidence 467999999999999998883
No 215
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.012 Score=45.85 Aligned_cols=82 Identities=22% Similarity=0.252 Sum_probs=57.9
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcC---------------------ccc----cccceeeeeecCCcccccCCCCCCCee
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSH---------------------SEF----REERVNAFVCNVVNDDLSRNVNPSSVD 123 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~---------------------~~~----~~~~~~~~~~D~~~~~~~~~~~~~~fD 123 (231)
...++..|||-|+|+|.++.+++.. .+| -...+.++.-|++..-+ ...+..+|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF--~~ks~~aD 179 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF--LIKSLKAD 179 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc--cccccccc
Confidence 3588999999999999999998811 111 13456677778876654 33467889
Q ss_pred EEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.|++ .+ ..+-.++-.++.+||.+|.-+++
T Consensus 180 aVFL-----Dl--PaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 180 AVFL-----DL--PAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred eEEE-----cC--CChhhhhhhhHHHhhhcCceEEe
Confidence 8887 33 45666777888899988764443
No 216
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.73 E-value=0.0048 Score=52.50 Aligned_cols=91 Identities=14% Similarity=0.203 Sum_probs=53.6
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCcc------------------------ccccceeeeeecCCcccccCCCCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSE------------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~------------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~i 125 (231)
..++.+|||+++|+|.-+.+++.... +.-.++.++..|.... . ....+.||.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~--~-~~~~~~fD~I 187 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF--G-AALPETFDAI 187 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh--h-hhchhhcCeE
Confidence 46889999999999999988872210 0011222233333211 0 1123579999
Q ss_pred EE----ee--eeeccC-------CC-------CHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 126 TL----IF--MLSAVS-------PK-------KMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 126 i~----~~--~l~~~~-------~~-------~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
++ +. ++..-| ++ -...+|..+.+.|||||.++-++-+.
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 95 22 232211 00 11678899999999999997665443
No 217
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.67 E-value=0.0086 Score=48.38 Aligned_cols=104 Identities=12% Similarity=0.158 Sum_probs=56.8
Q ss_pred chhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCc---cccccceeeeeecCCcccccC-----------
Q 045799 50 DRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHS---EFREERVNAFVCNVVNDDLSR----------- 115 (231)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~---~~~~~~~~~~~~D~~~~~~~~----------- 115 (231)
.+..+...+..++. ..++.+|||-+||+|.+...+.... .......++.+.|+.......
T Consensus 30 TP~~i~~l~~~~~~------~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 30 TPREIVDLMVKLLN------PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp --HHHHHHHHHHHT------T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred hHHHHHHHHHhhhh------ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 55566666655552 3566789999999999987775210 111123455566654433210
Q ss_pred ---------------CCC-CCCeeEEEEeeeeecc-------CC------------CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 116 ---------------NVN-PSSVDVVTLIFMLSAV-------SP------------KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 116 ---------------~~~-~~~fD~ii~~~~l~~~-------~~------------~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
... ..+||+|+++=-+... .. ..--.++..+.+.|++||.+.+.
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 111 4689999995432211 00 01125889999999999997665
No 218
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.58 E-value=0.0052 Score=48.29 Aligned_cols=137 Identities=13% Similarity=0.103 Sum_probs=81.9
Q ss_pred CCeEEEEcCCCCcchHHHhcC------------------------ccccccceeeeeecCCcccccC-----CCCCCCee
Q 045799 73 PKVVLEVGCGAGNTIFPLVSH------------------------SEFREERVNAFVCNVVNDDLSR-----NVNPSSVD 123 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~------------------------~~~~~~~~~~~~~D~~~~~~~~-----~~~~~~fD 123 (231)
...|+.+|||--.-...+... ......+...+.+|+. ..+.. .+..+.--
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTAPT 160 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCCCe
Confidence 357999999976555444300 0011335566777776 43322 23334567
Q ss_pred EEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhh-hhhccccccccceEEeCCCeEEEeeCHHHHHHH
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQV-KLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTL 202 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (231)
++++-.++.++++++...+++.+.+...||+.+++......+.... ............ ..... ....++..++.++
T Consensus 161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~ 237 (260)
T TIGR00027 161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARG--VDGSG-LVFGIDRADVAEW 237 (260)
T ss_pred eeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhc--ccccc-cccCCChhhHHHH
Confidence 8888899999998899999999999888888887754433111100 000000000000 00111 1234788999999
Q ss_pred HHHcCceEEEE
Q 045799 203 FLEAGFSTVDI 213 (231)
Q Consensus 203 l~~~Gf~~~~~ 213 (231)
|.+.||++.+.
T Consensus 238 l~~~Gw~~~~~ 248 (260)
T TIGR00027 238 LAERGWRASEH 248 (260)
T ss_pred HHHCCCeeecC
Confidence 99999998775
No 219
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.54 E-value=0.00067 Score=45.19 Aligned_cols=39 Identities=15% Similarity=0.349 Sum_probs=31.2
Q ss_pred CeeEEEEeeeeec--cC--CCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 121 SVDVVTLIFMLSA--VS--PKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 121 ~fD~ii~~~~l~~--~~--~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+||+|+|..|.-+ +. ++-...++++++++|+|||++++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 5899999887543 32 567789999999999999999886
No 220
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.02 Score=47.17 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=57.6
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------C-CCCCCe
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------N-VNPSSV 122 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~-~~~~~f 122 (231)
...++.+|||++++.|.=+.+++.... +.+..++..|++..-+.. . ...++|
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~--~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELME--NEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcC--CCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcC
Confidence 467889999999999999988883321 112233455554322110 1 112359
Q ss_pred eEEEE------eeeeeccC-------CC-------CHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 123 DVVTL------IFMLSAVS-------PK-------KMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 123 D~ii~------~~~l~~~~-------~~-------~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
|.|++ .+++.--| ++ -...+|..+.++|||||.++-++-+.
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 99998 23342111 11 13578889999999999998875444
No 221
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.45 E-value=0.0063 Score=50.53 Aligned_cols=77 Identities=14% Similarity=0.091 Sum_probs=49.9
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCC-CCCeeEEEEee
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVN-PSSVDVVTLIF 129 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~-~~~fD~ii~~~ 129 (231)
+.+|||++||+|..+..++.... ...++.+|+++..+.. .+. .++||+|++.=
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~----~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG----VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC
Confidence 46899999999999999873322 1133444444322210 011 35799888731
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+-....++..+.+.+++||+++++
T Consensus 134 ------~Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 134 ------FGSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ------CCCcHHHHHHHHHHhcCCCEEEEE
Confidence 234567888877889999999997
No 222
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=96.41 E-value=0.0026 Score=50.92 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~ 92 (231)
.++..|||||||+|.++..++.
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~ 56 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQ 56 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHH
Confidence 5678999999999999998873
No 223
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.36 E-value=0.023 Score=44.02 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=31.3
Q ss_pred eeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 122 VDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 122 fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+|+|+++.++.+- +.+..++..++..|..+|.+++..
T Consensus 163 ~DlilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 163 FDLILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred ccEEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEE
Confidence 9999999998776 788889999999998888666653
No 224
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.36 E-value=0.029 Score=42.43 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=25.5
Q ss_pred EEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc
Q 045799 76 VLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS 114 (231)
Q Consensus 76 iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~ 114 (231)
|.||||--|.+..+|+.... .-.++.+|+.+..+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~----~~~~ia~DI~~gpL~ 35 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK----APKAIAVDINPGPLE 35 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS----EEEEEEEESSHHHHH
T ss_pred CceeccchhHHHHHHHhcCC----CCEEEEEeCCHHHHH
Confidence 68999999999999986543 225677888876654
No 225
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.35 E-value=0.012 Score=42.07 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=34.9
Q ss_pred CCCeeEEEEeeeeeccC---------CCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 119 PSSVDVVTLIFMLSAVS---------PKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~---------~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
.++||.+.+..+++|+. +.--...+.++.++||+||.+++..+..
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 46899999999999972 1222467788999999999999975444
No 226
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.24 E-value=0.017 Score=43.77 Aligned_cols=85 Identities=19% Similarity=0.281 Sum_probs=50.6
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCcc---------c-------------cccceeeeeecCCcccccCCCCCCCeeEEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSE---------F-------------REERVNAFVCNVVNDDLSRNVNPSSVDVVTL 127 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~---------~-------------~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~ 127 (231)
..++.+||-+|.++|....++..-.. + .+.++--+..|...+..-..+ -+..|+|++
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~l-v~~VDvI~~ 149 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRML-VEMVDVIFQ 149 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTT-S--EEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcc-cccccEEEe
Confidence 47899999999999999999871110 0 122333344455433322222 248999988
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
--. -+++.+-++.++...||+||.++++
T Consensus 150 DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 150 DVA----QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp E-S----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCC----ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 331 1355566677888899999999886
No 227
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.12 E-value=0.011 Score=43.31 Aligned_cols=92 Identities=16% Similarity=0.122 Sum_probs=50.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeec-----------------CCccccc----CCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCN-----------------VVNDDLS----RNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D-----------------~~~~~~~----~~~~~~~fD~ii~~~ 129 (231)
.++.+|||+||.+|.++.-...... .+-.+.++| +...... ..+++...|+|++-.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~---p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDM 144 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVN---PNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDM 144 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhC---CCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEecc
Confidence 7799999999999999865442211 111233333 3322211 134778899998843
Q ss_pred eeecc--CCCCHHH-------HHHHHHHhcCCCeEEEEEeccCCc
Q 045799 130 MLSAV--SPKKMPL-------ILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 130 ~l~~~--~~~~~~~-------~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
.-..- ...|-.. ++.-....++|+|.+++-.+...+
T Consensus 145 apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 145 APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 21100 0012222 233334566799998887655543
No 228
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.08 E-value=0.0063 Score=48.30 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=50.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------------C-CCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------------N-VNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------------~-~~~~~f 122 (231)
.++++|||+=|=||.++.+.+... ..+++.+|.|...++. . -..++|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG-----A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~f 196 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG-----AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRF 196 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT-----ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred cCCCceEEecCCCCHHHHHHHHCC-----CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCC
Confidence 347899999999999998776221 1133445544433321 0 024689
Q ss_pred eEEEEe---eeeeccC-CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 123 DVVTLI---FMLSAVS-PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 123 D~ii~~---~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|+||+- +.=.... ..+...++..+.++|+|||.++++.
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 999981 1100000 1356678899999999999987763
No 229
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.05 E-value=0.0028 Score=47.03 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=49.5
Q ss_pred CCCeEEEEcCCCCcchHHHhcCcc----------------------cc-ccceeeeeecCCcccccCCCCCCCeeEEEEe
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSE----------------------FR-EERVNAFVCNVVNDDLSRNVNPSSVDVVTLI 128 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~----------------------~~-~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~ 128 (231)
.+.++||+=||+|.++...++... .. ...+.++..|.............+||+|++-
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 478999999999999998873211 00 0123344444332211111146899999883
Q ss_pred eeeeccCCCC-HHHHHHHHH--HhcCCCeEEEEEeccC
Q 045799 129 FMLSAVSPKK-MPLILQNIK--AVLKPDGYILVCDYAI 163 (231)
Q Consensus 129 ~~l~~~~~~~-~~~~l~~~~--~~Lk~gG~l~i~~~~~ 163 (231)
=- +- ... ...++..+. .+|+++|.+++.....
T Consensus 122 PP--Y~-~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 122 PP--YA-KGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp -S--TT-SCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CC--cc-cchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 21 11 022 366777777 7889999988864333
No 230
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.99 E-value=0.0042 Score=46.91 Aligned_cols=86 Identities=22% Similarity=0.339 Sum_probs=42.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCcc--------------------------------ccccceeeeeecCCcccccCCC
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSE--------------------------------FREERVNAFVCNVVNDDLSRNV 117 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~--------------------------------~~~~~~~~~~~D~~~~~~~~~~ 117 (231)
..++...+|||||.|......+.... .....+.....|+........+
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 36788999999999998877761100 0112233334444322211000
Q ss_pred CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
-...|+|++++. .++ ++....+.+....||+|.+++..
T Consensus 120 -~s~AdvVf~Nn~--~F~-~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 120 -WSDADVVFVNNT--CFD-PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp -GHC-SEEEE--T--TT--HHHHHHHHHHHTTS-TT-EEEES
T ss_pred -hcCCCEEEEecc--ccC-HHHHHHHHHHHhcCCCCCEEEEC
Confidence 024589999875 233 45666678888889998887654
No 231
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.92 E-value=0.035 Score=42.17 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=29.2
Q ss_pred CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+.+.||+++.- |.. ++....+.++.+++|+||++++-.
T Consensus 146 ~~~tfDfaFvD----adK-~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 146 ESGTFDFAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred CCCceeEEEEc----cch-HHHHHHHHHHHhhcccccEEEEec
Confidence 56899999873 332 344578899999999999998864
No 232
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.91 E-value=0.022 Score=49.50 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=17.7
Q ss_pred CCCeEEEEcCCCCcchHHHh
Q 045799 72 NPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~ 91 (231)
...+|||.|||+|.++..++
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~ 50 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALL 50 (524)
T ss_pred cceEEEeCCCCccHHHHHHH
Confidence 45689999999999998887
No 233
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=95.68 E-value=0.027 Score=43.93 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=35.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc------------------c-cccceeeeeecCCcccccCCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE------------------F-REERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~------------------~-~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~ 129 (231)
.++..|||||+|.|.++..|+.... + ...+++++..|+.+-++..-. .++.|+++-
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~---~~~~vVaNl 103 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA---QPYKVVANL 103 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc---CCCEEEEcC
Confidence 4578999999999999999993311 1 124556666777655442111 456666643
No 234
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.55 E-value=0.23 Score=37.12 Aligned_cols=83 Identities=20% Similarity=0.339 Sum_probs=54.2
Q ss_pred CCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------C------C------CCCCee
Q 045799 68 CPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------N------V------NPSSVD 123 (231)
Q Consensus 68 ~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------~------~------~~~~fD 123 (231)
.+..++.+||-+|..+|....++..-.. .+ .+.++.++..+... | . --++.|
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~---~G-~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVG---EG-RIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccC---CC-cEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhccccc
Confidence 4468899999999999999999873322 11 23455555443321 1 1 124577
Q ss_pred EEEEeeeeeccC-CCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 124 VVTLIFMLSAVS-PKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 124 ~ii~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+|+. .+. +++.+=+..++...||+||.++++
T Consensus 148 viy~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 148 VIYQ-----DVAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred EEEE-----ecCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 7776 343 455566677889999999987775
No 235
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=95.42 E-value=0.013 Score=44.05 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=45.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CC-CCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NV-NPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~-~~~~fD~ii~ 127 (231)
.++..|||+-||-|.++..++.... ...++++|+.+..... .+ +...||-|++
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~----~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim 175 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGK----AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIM 175 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-----SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcC----ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEE
Confidence 7789999999999999999984111 1234444444332210 11 2678898888
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEE
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYI 156 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l 156 (231)
.. | .....++..+.+++++||.+
T Consensus 176 ~l-----p-~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 176 NL-----P-ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp -------T-SSGGGGHHHHHHHEEEEEEE
T ss_pred CC-----h-HHHHHHHHHHHHHhcCCcEE
Confidence 54 2 33445888899999999876
No 236
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.40 E-value=0.021 Score=44.51 Aligned_cols=24 Identities=42% Similarity=0.520 Sum_probs=21.3
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhc
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~ 92 (231)
+..++..|||||.|||.++..|+.
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe 78 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLE 78 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHH
Confidence 357889999999999999999983
No 237
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.28 E-value=0.03 Score=43.20 Aligned_cols=60 Identities=17% Similarity=0.346 Sum_probs=40.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~ 129 (231)
++..+|+|||||.-.++..++.... +..+.+.|+.....+. ..+....|+.++.=
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~----~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK 179 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAP----GATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLK 179 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSST----T-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET
T ss_pred CCCchhhhhhccCCceehhhcccCC----CcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHH
Confidence 6689999999999988888874422 4467778877665432 22557899999999
Q ss_pred eeecc
Q 045799 130 MLSAV 134 (231)
Q Consensus 130 ~l~~~ 134 (231)
+++++
T Consensus 180 ~lp~l 184 (251)
T PF07091_consen 180 TLPCL 184 (251)
T ss_dssp -HHHH
T ss_pred HHHHH
Confidence 99888
No 238
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.21 E-value=0.013 Score=45.91 Aligned_cols=87 Identities=20% Similarity=0.276 Sum_probs=48.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCc-------cccccceeeeeecCCcccccC-----------CC-----------CCC-
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHS-------EFREERVNAFVCNVVNDDLSR-----------NV-----------NPS- 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~-------~~~~~~~~~~~~D~~~~~~~~-----------~~-----------~~~- 120 (231)
..+++|||+|||.|........+. .+....+..+..+....+... ++ ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 578999999999998887765322 111122222222221111100 00 112
Q ss_pred -CeeEEEEeeeeeccCCCCHHHH-HHHHHHhcCCCeEEEEE
Q 045799 121 -SVDVVTLIFMLSAVSPKKMPLI-LQNIKAVLKPDGYILVC 159 (231)
Q Consensus 121 -~fD~ii~~~~l~~~~~~~~~~~-l~~~~~~Lk~gG~l~i~ 159 (231)
+||+|.++.++-.. +..+.+ ......+++++|+++++
T Consensus 195 ~~ydlIlsSetiy~~--~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 195 THYDLILSSETIYSI--DSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cchhhhhhhhhhhCc--chhhhhHhhhhhhcCCccchhhhh
Confidence 77888777776554 444444 55666777889988775
No 239
>PRK13699 putative methylase; Provisional
Probab=95.10 E-value=0.098 Score=40.28 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCCeEEEE
Q 045799 139 MPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 139 ~~~~l~~~~~~Lk~gG~l~i 158 (231)
...++.+++|+|||||.+++
T Consensus 51 ~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 45788999999999998876
No 240
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.08 E-value=0.097 Score=39.40 Aligned_cols=94 Identities=18% Similarity=0.314 Sum_probs=45.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecC--------------------------CcccccCCC----CCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNV--------------------------VNDDLSRNV----NPS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~--------------------------~~~~~~~~~----~~~ 120 (231)
.++..|+|+|.-.|+-+..++.....-....+++++|+ +........ ...
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 34689999999999888777622111111234444544 322211111 112
Q ss_pred CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchh
Q 045799 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFA 167 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~ 167 (231)
+..+|+.-. -|.- +...+.|+....++++|+++++.|.......
T Consensus 111 ~~vlVilDs-~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~ 154 (206)
T PF04989_consen 111 HPVLVILDS-SHTH--EHVLAELEAYAPLVSPGSYLIVEDTIIEDWP 154 (206)
T ss_dssp SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETSHHHHHHH
T ss_pred CceEEEECC-CccH--HHHHHHHHHhCccCCCCCEEEEEeccccccc
Confidence 334444422 2222 5567788889999999999999876554433
No 241
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.04 E-value=0.013 Score=41.13 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
-.+++++|+|||.|.++...... . .-.++++|+.++.+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~---~--~e~vlGfDIdpeAL 84 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMP---K--NESVLGFDIDPEAL 84 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcC---C--CceEEeeecCHHHH
Confidence 45789999999999888554311 1 11345666655444
No 242
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.00 E-value=0.0081 Score=40.19 Aligned_cols=80 Identities=19% Similarity=0.193 Sum_probs=28.6
Q ss_pred EEEcCCCCcchHHHhcCccccccceeeeeecCCcc--ccc-----------------------CCCCCCCeeEEEEeeee
Q 045799 77 LEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVND--DLS-----------------------RNVNPSSVDVVTLIFML 131 (231)
Q Consensus 77 LdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~--~~~-----------------------~~~~~~~fD~ii~~~~l 131 (231)
||||+..|..+..++....-.. ..+++++|..+. ... ..++.++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~-~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNG-RGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp ---------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred Cccccccccccccccccccccc-cCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 6888888887777763221111 123455555441 000 0122467888887552
Q ss_pred eccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 132 SAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|.. +.....+..+...|+|||++++-|
T Consensus 79 H~~--~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSY--EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --H--HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCH--HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 112 345567788888999999998764
No 243
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=94.99 E-value=0.024 Score=41.98 Aligned_cols=88 Identities=19% Similarity=0.227 Sum_probs=48.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccc-----cceeeeeecCCcccccC------------------------CCCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFRE-----ERVNAFVCNVVNDDLSR------------------------NVNPSS 121 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~-----~~~~~~~~D~~~~~~~~------------------------~~~~~~ 121 (231)
.++..+||--||+|.+....+....... ....+++.|+...++.. ++.+++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCC
Confidence 5678999999999998877652111000 12235677776655421 335678
Q ss_pred eeEEEEeeeeecc-C-C----CCHHHHHHHHHHhcCCCeEEEE
Q 045799 122 VDVVTLIFMLSAV-S-P----KKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 122 fD~ii~~~~l~~~-~-~----~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
+|.|++.--...- . . +-...+++++.++|++..++++
T Consensus 107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 9999995533321 1 0 1124667888888888444433
No 244
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.89 E-value=0.03 Score=42.53 Aligned_cols=86 Identities=16% Similarity=0.090 Sum_probs=52.0
Q ss_pred CCeEEEEcCCCCcchHHHhcCccc----c-ccceeeeeecCCcc----------------ccc----CCCCCCCeeEEEE
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEF----R-EERVNAFVCNVVND----------------DLS----RNVNPSSVDVVTL 127 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~----~-~~~~~~~~~D~~~~----------------~~~----~~~~~~~fD~ii~ 127 (231)
-.+++|+...+|.++..|..+... . ...-..+.+|+.+. .-. .-|..++.|+|+|
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvc 121 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVC 121 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEe
Confidence 478999999999999777621100 0 00002445555421 111 1346679999999
Q ss_pred ee-----eeeccCCCCH------HHHHHHHHHhcCCCeEEEEEe
Q 045799 128 IF-----MLSAVSPKKM------PLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 128 ~~-----~l~~~~~~~~------~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
-. .+|.+ ++. .+.|.-...+|+|||.|+.--
T Consensus 122 DGAPDvTGlHd~--DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 122 DGAPDVTGLHDL--DEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred CCCCCccccccH--HHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 54 46655 332 345566678899999997643
No 245
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.65 E-value=0.35 Score=39.62 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=53.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------------CCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------------NVNP 119 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------------~~~~ 119 (231)
+...++|-+|.|.|.-++.++..... .++..+|+.+.|++. .-..
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~----~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~ 363 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQV----EQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA 363 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCc----ceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc
Confidence 44568999999999999888743221 144555555555432 1123
Q ss_pred CCeeEEEEeeeeeccCCCC-------HHHHHHHHHHhcCCCeEEEEEe
Q 045799 120 SSVDVVTLIFMLSAVSPKK-------MPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~-------~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+.||.||.-.- +|.. -..+...+++.|+++|.+++..
T Consensus 364 ~~fD~vIVDl~----DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 364 DMFDVVIVDLP----DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred ccccEEEEeCC----CCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 57898887331 1111 2467888999999999998863
No 246
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.61 E-value=0.19 Score=40.35 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=69.4
Q ss_pred ceeeeeecCCcccccCC-----CCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhh-c
Q 045799 100 RVNAFVCNVVNDDLSRN-----VNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLL-D 173 (231)
Q Consensus 100 ~~~~~~~D~~~~~~~~~-----~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~-~ 173 (231)
....+.+|+...++... +..+.--++++-+++.+++++...+++..|...+.||..++.......... .... .
T Consensus 144 ~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~-~~~~~~ 222 (297)
T COG3315 144 HRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLR-DRLRRP 222 (297)
T ss_pred eEEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHH-hcccch
Confidence 56777888876665443 335667789999999999999999999999999988877766532111110 0000 0
Q ss_pred cccccccceEEeCCCeE-EEeeCHHHHHHHHHHcCceEEEE
Q 045799 174 RNQMIGDSFYVRGDGTC-SFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 174 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
........ .....+.. ....+..++...+.+.||.....
T Consensus 223 ~~~~~~~~-~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 223 AARKTMRG-EDLDRGELVYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred hhhhhccc-cccccccceeccCCHHHHHHHHHhcCEEEEec
Confidence 00000000 00111212 22356899999999999987765
No 247
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.43 E-value=0.027 Score=39.93 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
.+...|+|+|||.|.++..|+....-...+.+++++|..+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~ 66 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV 66 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH
Confidence 6678999999999999998885100001356778888876543
No 248
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.03 E-value=0.18 Score=37.76 Aligned_cols=21 Identities=24% Similarity=0.601 Sum_probs=17.9
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.+.-.+.|||||-|.+...|+
T Consensus 59 ~~kvefaDIGCGyGGLlv~Ls 79 (249)
T KOG3115|consen 59 NKKVEFADIGCGYGGLLMKLA 79 (249)
T ss_pred cccceEEeeccCccchhhhcc
Confidence 345679999999999998887
No 249
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=93.86 E-value=0.18 Score=34.87 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=41.2
Q ss_pred CCeeEEEEeeeeeccCCCCH----HHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeC
Q 045799 120 SSVDVVTLIFMLSAVSPKKM----PLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFS 195 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~~----~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (231)
..+|+|+.-.. -|..++ ..+++.+++++++||.+... -.
T Consensus 49 ~~~Da~ylDgF---sP~~nPelWs~e~~~~l~~~~~~~~~l~Ty----------------------------------s~ 91 (124)
T PF05430_consen 49 ARFDAWYLDGF---SPAKNPELWSEELFKKLARLSKPGGTLATY----------------------------------SS 91 (124)
T ss_dssp T-EEEEEE-SS----TTTSGGGSSHHHHHHHHHHEEEEEEEEES------------------------------------
T ss_pred ccCCEEEecCC---CCcCCcccCCHHHHHHHHHHhCCCcEEEEe----------------------------------ec
Confidence 57888887542 122333 57999999999999988553 12
Q ss_pred HHHHHHHHHHcCceEEEEEEE
Q 045799 196 EDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 196 ~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
...+++.|.++||.+.+....
T Consensus 92 a~~Vr~~L~~aGF~v~~~~g~ 112 (124)
T PF05430_consen 92 AGAVRRALQQAGFEVEKVPGF 112 (124)
T ss_dssp BHHHHHHHHHCTEEEEEEE-S
T ss_pred hHHHHHHHHHcCCEEEEcCCC
Confidence 246899999999999886654
No 250
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.73 E-value=0.045 Score=36.42 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=24.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
.+...-+|||||+|.+..-|. .. +....++|+...-.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~-~E-----Gy~G~GiD~R~Rk~ 93 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILN-SE-----GYPGWGIDARRRKS 93 (112)
T ss_pred CCCCceEEccCCchHHHHHHH-hC-----CCCccccccccccc
Confidence 345678999999998775554 33 33455777765443
No 251
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=93.64 E-value=0.045 Score=45.08 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=27.4
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS 114 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~ 114 (231)
.++||++||+|.++..++.... .++++|.+..++.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~------~v~~vE~~~~av~ 233 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR------RVLATEIAKPSVN 233 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC------EEEEEECCHHHHH
Confidence 4799999999999998874421 5778888877764
No 252
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=93.16 E-value=0.24 Score=41.18 Aligned_cols=78 Identities=9% Similarity=0.057 Sum_probs=51.3
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEEEEe
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ii~~ 128 (231)
+.+|||+-||+|..+..++..... .-.++..|+++..... .....+||+|..-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~g---a~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEG---VREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCC---CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 368999999999999998854210 0134455554433211 0012578988762
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
= + ..+..++..+.+.++++|++.+.
T Consensus 122 P-f-----Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 122 P-F-----GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-C-----CCcHHHHHHHHHhcccCCEEEEE
Confidence 2 2 34457999999999999999986
No 253
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.03 E-value=0.13 Score=42.73 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=43.6
Q ss_pred CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCC
Q 045799 116 NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 116 ~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~ 164 (231)
..+++++|.++....+.++++++....++++.+.++|||+++.......
T Consensus 290 ~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 290 RLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred hCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 3468999999999999999989999999999999999999999865543
No 254
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=0.9 Score=37.23 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCCeEEEEEeccCCchhhhh-hhcc-------ccccccceE-EeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 139 MPLILQNIKAVLKPDGYILVCDYAIGDFAQVK-LLDR-------NQMIGDSFY-VRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 139 ~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~-~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
...+++.+...|+- |++++.|++.+.....+ .... .+....+++ ..+..-.....+...+..+.+++|++
T Consensus 221 ~~~~l~~ia~~L~~-G~~l~iDYG~~~~~~~~~~r~~g~~~~~~~~h~~~~~~~~~G~aDLTahVdFt~L~~~~~~~g~~ 299 (370)
T COG1565 221 REALLKAIAERLER-GVFLFIDYGYPAEEYYHPRRAYGTTLQAYRHHVHDDPLANPGLADLTAHVDFTALAKAAKAAGLE 299 (370)
T ss_pred HHHHHHHHHHHHhh-CeEEEEecCCcccccccccccCccHHHHHHhhccCChhhccCccceeeeecHHHHHHHHHHcCCc
Confidence 35889999999988 88888888775332210 0000 011111111 12222233457888999999999999
Q ss_pred EEEEEE
Q 045799 210 TVDINI 215 (231)
Q Consensus 210 ~~~~~~ 215 (231)
+..+..
T Consensus 300 ~~~~~t 305 (370)
T COG1565 300 VLGFKT 305 (370)
T ss_pred ccchhh
Confidence 876543
No 255
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=92.97 E-value=0.095 Score=41.93 Aligned_cols=42 Identities=7% Similarity=0.091 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~ 115 (231)
.++..+||++||.|.++..++... .....++++|..+.++..
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~---~~~g~VigiD~D~~al~~ 59 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERL---GPKGRLIAIDRDPDAIAA 59 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhC---CCCCEEEEEcCCHHHHHH
Confidence 567899999999999999998542 112468899999887643
No 256
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=92.95 E-value=0.39 Score=43.17 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=16.9
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.+.-+|+|+|-|+|.+....+
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~ 76 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATW 76 (662)
T ss_pred CCcEEEEecCcchHHHHHHHH
Confidence 445799999999999776665
No 257
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=92.91 E-value=0.27 Score=36.40 Aligned_cols=88 Identities=20% Similarity=0.141 Sum_probs=48.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcccc-----------------------ccceeeeeecCCcccccCCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFR-----------------------EERVNAFVCNVVNDDLSRNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~-----------------------~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~ 127 (231)
-.+.++||+=+|+|.++...++..... ...++++..|.. ..+...-..++||+|+.
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~-~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL-RALKQLGTREPFDLVFL 120 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH-HHHHhcCCCCcccEEEe
Confidence 457899999999999999888331100 123334444444 11111112235999998
Q ss_pred eeeeeccCCCCHHHHHHH--HHHhcCCCeEEEEEe
Q 045799 128 IFMLSAVSPKKMPLILQN--IKAVLKPDGYILVCD 160 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~--~~~~Lk~gG~l~i~~ 160 (231)
-=-++ ...-+....+.. -...|+|+|.+++..
T Consensus 121 DPPy~-~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 121 DPPYA-KGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCCc-cchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 33222 100111222222 346799999998864
No 258
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=92.67 E-value=0.084 Score=43.69 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=27.5
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS 114 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~ 114 (231)
.++||++||+|.++..++.... .++++|.++.++.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~------~v~~vE~~~~ai~ 242 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR------RVLATEISKPSVA 242 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC------EEEEEECCHHHHH
Confidence 5799999999999998774421 5678888877764
No 259
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.66 E-value=0.65 Score=33.89 Aligned_cols=88 Identities=17% Similarity=0.095 Sum_probs=56.6
Q ss_pred eeecCCcccccCCCCCCCeeEEEEeeeeeccC------C-------CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh
Q 045799 104 FVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVS------P-------KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK 170 (231)
Q Consensus 104 ~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~------~-------~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~ 170 (231)
.++|.....-......+.||.|+.++ .|+. . +=+..+++.+..+|+++|.+.|.-.....
T Consensus 58 ~~VDat~l~~~~~~~~~~FDrIiFNF--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p----- 130 (166)
T PF10354_consen 58 HGVDATKLHKHFRLKNQRFDRIIFNF--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP----- 130 (166)
T ss_pred cCCCCCcccccccccCCcCCEEEEeC--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC-----
Confidence 35566544333344678999999977 3443 0 11257888999999999999886211111
Q ss_pred hhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEeeeee
Q 045799 171 LLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIK 221 (231)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ 221 (231)
|+.=.+.++.+++||.+++...+.+...
T Consensus 131 -----------------------y~~W~i~~lA~~~gl~l~~~~~F~~~~y 158 (166)
T PF10354_consen 131 -----------------------YDSWNIEELAAEAGLVLVRKVPFDPSDY 158 (166)
T ss_pred -----------------------CccccHHHHHHhcCCEEEEEecCCHHHC
Confidence 1222566788889999988776655443
No 260
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=92.52 E-value=0.14 Score=43.59 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS 114 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~ 114 (231)
.+.+..+||+.||||..+..++.... .++++.++++...
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~~------~ViGvEi~~~aV~ 419 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGVK------RVIGVEISPDAVE 419 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcccc------ceeeeecChhhcc
Confidence 36678999999999999988875533 5677777766553
No 261
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=92.41 E-value=0.44 Score=36.85 Aligned_cols=88 Identities=18% Similarity=0.262 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------------CCCC-CCeeE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------------NVNP-SSVDV 124 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------------~~~~-~~fD~ 124 (231)
.+..++|+|+|+..-++.|+......+.-..++-+|++..-+.. .++. ++==.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 36789999999999888877322222223455666666433321 1122 22234
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
++...++..+++++...++..+...|+||-++++-
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 44455788898899999999999999999999874
No 262
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=92.19 E-value=0.084 Score=38.27 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=16.0
Q ss_pred eEEEEcCCCCcchHHHhcC
Q 045799 75 VVLEVGCGAGNTIFPLVSH 93 (231)
Q Consensus 75 ~iLdvGcG~G~~~~~l~~~ 93 (231)
.|+|+.||.|.++.+++..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~ 20 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART 20 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT
T ss_pred EEEEeccCcCHHHHHHHHh
Confidence 6899999999999999943
No 263
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.80 E-value=1.6 Score=37.02 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=29.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS 114 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~ 114 (231)
.++.++||+=||.|.++..|+.. ..++.+++++++++.
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~------~~~V~gvEi~~~aV~ 329 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKR------VKKVHGVEISPEAVE 329 (432)
T ss_pred cCCCEEEEeccCCChhhhhhccc------CCEEEEEecCHHHHH
Confidence 45689999999999999999844 236677777776654
No 264
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=91.30 E-value=0.46 Score=37.65 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=41.8
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEEE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVVT 126 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~ii 126 (231)
.+.+|+=||||+=.++..+++..... +..+.++|..+..... ...-..||+|+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~--~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~ 197 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGP--GARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVF 197 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT----EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEE
Confidence 34699999999888776666322111 2233344433222110 11225899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
....... +.++...++..+.+.++||..+++.
T Consensus 198 lAalVg~-~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 198 LAALVGM-DAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp E-TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred Ehhhccc-ccchHHHHHHHHHhhCCCCcEEEEe
Confidence 8775542 2357889999999999999999886
No 265
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=91.06 E-value=0.54 Score=37.37 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=56.3
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcC---------------------------ccccccceeeeeecCCcccccCCCCCCC
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSH---------------------------SEFREERVNAFVCNVVNDDLSRNVNPSS 121 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~---------------------------~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 121 (231)
...+.+++|=||.|.|...+....+ ..|+..++...++|-..-. ...+.++
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl--~~~~~~~ 195 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFL--EDLKENP 195 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHH--HHhccCC
Confidence 3467789999999999998877633 2244444444444432111 1234689
Q ss_pred eeEEEEeeeeeccC--CCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 122 VDVVTLIFMLSAVS--PKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 122 fD~ii~~~~l~~~~--~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
||+|+.-..=--.| .--.+.+++.+.+.||++|+++..
T Consensus 196 ~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 196 FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 99998743211111 012356788899999999999875
No 266
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=90.80 E-value=0.27 Score=41.38 Aligned_cols=45 Identities=7% Similarity=0.077 Sum_probs=31.2
Q ss_pred CCeeEEEEeeeeeccC-CCCHHHHHHH-HHHhcCCCeEEEEEeccCC
Q 045799 120 SSVDVVTLIFMLSAVS-PKKMPLILQN-IKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~-~~~~~~~l~~-~~~~Lk~gG~l~i~~~~~~ 164 (231)
+.||+|++.+.++++. ........+. ..+..++|+.+++.+.+..
T Consensus 273 ~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 273 NGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred cceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 5699999999999985 2233334444 4456688999988765443
No 267
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=90.62 E-value=0.7 Score=30.24 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=50.2
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
..+|-|.|.++..+++..+....+ |.+++. +.+.......+ ..+++-+-.......-....++++.+.+.++|
T Consensus 2 mDvLIHYp~~d~~~~l~~La~~t~--~~~ifT-fAP~T~~L~~m----~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g 74 (97)
T PF07109_consen 2 MDVLIHYPAEDAAQMLAHLASRTR--GSLIFT-FAPRTPLLALM----HAIGKLFPRPDRSPRIYPHREEDLRRALAAAG 74 (97)
T ss_pred cceEeccCHHHHHHHHHHHHHhcc--CcEEEE-ECCCCHHHHHH----HHHhccCCCCCCCCcEEEeCHHHHHHHHHhCC
Confidence 346667887888899999887554 556554 33332221111 12222221112222334578999999999999
Q ss_pred ceEEEEEEEee
Q 045799 208 FSTVDINIHLK 218 (231)
Q Consensus 208 f~~~~~~~~~~ 218 (231)
|++.....+..
T Consensus 75 ~~~~r~~ris~ 85 (97)
T PF07109_consen 75 WRIGRTERISS 85 (97)
T ss_pred CeeeecccccC
Confidence 99988765543
No 268
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=90.54 E-value=0.16 Score=35.76 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=25.0
Q ss_pred eEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 75 VVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 75 ~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
.+||||||.|..+..++.... ..+++.+|..+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~----~~~v~~~E~~~~~~ 35 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA----EGRVIAFEPLPDAY 35 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC----CCEEEEEecCHHHH
Confidence 479999999999988874321 23567777776554
No 269
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=90.52 E-value=3.2 Score=34.00 Aligned_cols=84 Identities=17% Similarity=0.234 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ii 126 (231)
..|..|||.=+|-|.++..++.... ..++.+|+.+..+.. ....+.+|-|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-----~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-----PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-----ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEE
Confidence 5699999999999999999884422 125566665544321 11126788888
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
+... .....++..+.+++++||.+-..++...+
T Consensus 262 m~~p------~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 262 MGLP------KSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred eCCC------CcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 8553 34566888889999999999887655544
No 270
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=90.51 E-value=0.31 Score=36.02 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=49.3
Q ss_pred CCeEEEEcCCCCcchHHHhcCc-------------cccc--------cceeeeeecCCcccccCCCCCCCeeEEEEeeee
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHS-------------EFRE--------ERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFML 131 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~-------------~~~~--------~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l 131 (231)
.....|+|+|+|.++...+..+ .+.. .++.++..|.+..++ +..|+|+|-..=
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f------e~ADvvicEmlD 106 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF------ENADVVICEMLD 106 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc------cccceeHHHHhh
Confidence 3678999999998886554111 1111 133344445443322 356888884432
Q ss_pred eccCCCCHHHHHHHHHHhcCCCeEEEE
Q 045799 132 SAVSPKKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
..+-.+....++..+.+.||-++.++-
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCcccc
Confidence 222236778899999999999988864
No 271
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=90.34 E-value=0.55 Score=42.54 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.0
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.++..++|..||+|.+.+..+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa 209 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAA 209 (702)
T ss_pred CCCCeEEccCCCccHHHHHHH
Confidence 356899999999999988776
No 272
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=90.26 E-value=1.7 Score=30.64 Aligned_cols=47 Identities=19% Similarity=0.238 Sum_probs=29.9
Q ss_pred CCCCCeeEEEEeeeeeccCCCC---------HHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 117 VNPSSVDVVTLIFMLSAVSPKK---------MPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 117 ~~~~~fD~ii~~~~l~~~~~~~---------~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
++.+++|+++.+. .++|-.| ....++.+.++|+|||++.+..+...+
T Consensus 42 i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 42 IPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp --S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STC
T ss_pred CccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCC
Confidence 3445899988765 5666333 357788999999999999998766544
No 273
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=90.19 E-value=0.51 Score=37.09 Aligned_cols=148 Identities=14% Similarity=0.231 Sum_probs=71.8
Q ss_pred chhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCC--cchHHHh-------------------cCc-----cccccceee
Q 045799 50 DRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAG--NTIFPLV-------------------SHS-----EFREERVNA 103 (231)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G--~~~~~l~-------------------~~~-----~~~~~~~~~ 103 (231)
++.|+.+.+..+... .--...||||||-- .+...++ ++. .-......+
T Consensus 52 nR~Fl~RaVr~la~~------~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~ 125 (267)
T PF04672_consen 52 NRAFLRRAVRYLAEE------AGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAY 125 (267)
T ss_dssp HHHHHHHHHHHHHCT------T---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEE
T ss_pred HHHHHHHHHHHHHHh------cCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEE
Confidence 445666665555531 13467999999843 3455554 000 001112456
Q ss_pred eeecCCcccccC------C-CCCCCeeEEEEeeeeeccCC-CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccc
Q 045799 104 FVCNVVNDDLSR------N-VNPSSVDVVTLIFMLSAVSP-KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRN 175 (231)
Q Consensus 104 ~~~D~~~~~~~~------~-~~~~~fD~ii~~~~l~~~~~-~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~ 175 (231)
+..|+....--. . +--..-=.+++..++||+++ +++..+++.+.+.|.||.+|+++.......... ..
T Consensus 126 v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~-~~--- 201 (267)
T PF04672_consen 126 VQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPER-AE--- 201 (267)
T ss_dssp EE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHH-HH---
T ss_pred EeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHH-HH---
Confidence 677766433211 1 11134457888899999985 899999999999999999999987655422111 00
Q ss_pred cccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEE
Q 045799 176 QMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVD 212 (231)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 212 (231)
.+.. .+ ...+....+.+.+++..+|. ||++++
T Consensus 202 -~~~~-~~-~~~~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 202 -ALEA-VY-AQAGSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp -HHHH-HH-HHCCS----B-HHHHHHCCT--TSEE-T
T ss_pred -HHHH-HH-HcCCCCceecCHHHHHHHcC--CCccCC
Confidence 0000 00 01122234568899999985 898876
No 274
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.91 E-value=2.2 Score=32.46 Aligned_cols=103 Identities=16% Similarity=0.116 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CC-CCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NV-NPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~-~~~~fD~ii 126 (231)
+.+.++.||||--+.+..+|..+.. .-.++.+|+.+..+.. ++ ++..+|+|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~----~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNP----ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCC----cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEE
Confidence 5566799999999999999984432 1134455555544421 12 223566666
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
..++=... ...++.+-.+.|+.=-.+++. +.....+++++|.+.
T Consensus 91 IAGMGG~l----I~~ILee~~~~l~~~~rlILQ--------------------------------Pn~~~~~LR~~L~~~ 134 (226)
T COG2384 91 IAGMGGTL----IREILEEGKEKLKGVERLILQ--------------------------------PNIHTYELREWLSAN 134 (226)
T ss_pred EeCCcHHH----HHHHHHHhhhhhcCcceEEEC--------------------------------CCCCHHHHHHHHHhC
Confidence 65532221 344555555555432233332 112456888888888
Q ss_pred CceEEEE
Q 045799 207 GFSTVDI 213 (231)
Q Consensus 207 Gf~~~~~ 213 (231)
+|+++..
T Consensus 135 ~~~I~~E 141 (226)
T COG2384 135 SYEIKAE 141 (226)
T ss_pred Cceeeee
Confidence 8887764
No 275
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=89.79 E-value=0.84 Score=38.09 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=20.6
Q ss_pred CCCCCCeEEEEcCCCCcchHHHh
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~ 91 (231)
++.++.+|||.++.+|.=+.+++
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IA 260 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIA 260 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHH
Confidence 56789999999999999888887
No 276
>PRK11524 putative methyltransferase; Provisional
Probab=89.66 E-value=0.32 Score=38.83 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=37.0
Q ss_pred ceeeeeecCCcccccCCCCCCCeeEEEEe--eee--eccCC----------CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 100 RVNAFVCNVVNDDLSRNVNPSSVDVVTLI--FML--SAVSP----------KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 100 ~~~~~~~D~~~~~~~~~~~~~~fD~ii~~--~~l--~~~~~----------~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
...++..|....+ ..+++++||+|++. +.+ .+-.. +-+..++.++.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l--~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTEL--KKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHH--HhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3355667776433 24567889999982 211 00000 11257889999999999999875
No 277
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=89.14 E-value=0.33 Score=38.75 Aligned_cols=89 Identities=19% Similarity=0.230 Sum_probs=53.4
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDV 124 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~ 124 (231)
..++..|||++++.|.-+.+++.... + .-.++..|++..-+.. ......||.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~--~-~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMG--N-KGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTT--T-TSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred ccccccccccccCCCCceeeeeeccc--c-hhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccch
Confidence 46788999999999999988872211 0 1123334443322110 112346999
Q ss_pred EEEee------eeeccC-------CCC-------HHHHHHHHHHhc----CCCeEEEEEec
Q 045799 125 VTLIF------MLSAVS-------PKK-------MPLILQNIKAVL----KPDGYILVCDY 161 (231)
Q Consensus 125 ii~~~------~l~~~~-------~~~-------~~~~l~~~~~~L----k~gG~l~i~~~ 161 (231)
|++-. ++..-| +++ ...+|..+.+.+ ||||+++-++-
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 99832 222111 111 247888999999 99999987653
No 278
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=88.61 E-value=0.43 Score=37.58 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=42.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCc------------------cc-cccceeeeeecCCcccccCCCCCCCeeEEEEeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHS------------------EF-REERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFML 131 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~------------------~~-~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l 131 (231)
.++..|||||+|+|.++..|+... .+ ...+++++..|+..-.....+ .+....|+++-..
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~-~~~~~~vv~NlPy 107 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL-KNQPLLVVGNLPY 107 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC-SSSEEEEEEEETG
T ss_pred CCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh-cCCceEEEEEecc
Confidence 468899999999999999998221 11 234566677776643332111 1233455543221
Q ss_pred eccCCCCHHHHHHHHHHhcCC
Q 045799 132 SAVSPKKMPLILQNIKAVLKP 152 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~ 152 (231)
.--..++.++...-+.
T Consensus 108 -----~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 108 -----NISSPILRKLLELYRF 123 (262)
T ss_dssp -----TGHHHHHHHHHHHGGG
T ss_pred -----cchHHHHHHHhhcccc
Confidence 2345566666663333
No 279
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=87.68 E-value=2.6 Score=34.65 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.4
Q ss_pred CCCCCCeEEEEcCCCCcchHHHh
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~ 91 (231)
...++.+|||+++.+|.=+..|+
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLL 174 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLL 174 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHH
Confidence 45889999999999999888777
No 280
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.36 E-value=5.5 Score=32.10 Aligned_cols=86 Identities=14% Similarity=0.095 Sum_probs=47.5
Q ss_pred eeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCC--CeEEEeeCHHHH
Q 045799 122 VDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGD--GTCSFYFSEDFL 199 (231)
Q Consensus 122 fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l 199 (231)
..++++--++.++++++-..+++-+..... .+.+++.+...+........ ..++..++- .+...+-+.+..
T Consensus 189 pTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~Fg~vM------~~nlk~r~~~L~gle~y~s~Esq 261 (335)
T KOG2918|consen 189 PTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDRFGKVM------LANLKRRGCPLHGLETYNSIESQ 261 (335)
T ss_pred ceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCChHHHHH------HHHHHhcCCCCchhhhcccHHHH
Confidence 344555556777877777777777777664 44455555333333221111 111111111 111246788999
Q ss_pred HHHHHHcCceEEEEE
Q 045799 200 STLFLEAGFSTVDIN 214 (231)
Q Consensus 200 ~~~l~~~Gf~~~~~~ 214 (231)
++-+.++||+-+.+.
T Consensus 262 ~~Rf~~~Gw~~v~a~ 276 (335)
T KOG2918|consen 262 RSRFLKAGWEYVIAV 276 (335)
T ss_pred HHHHHhcCCceeehh
Confidence 999999999877653
No 281
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=85.39 E-value=1.1 Score=37.06 Aligned_cols=34 Identities=24% Similarity=0.520 Sum_probs=24.5
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
..|||+=||.|.++..|+.... ++++++....++
T Consensus 198 ~~vlDlycG~G~fsl~la~~~~------~V~gvE~~~~av 231 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKAK------KVIGVEIVEEAV 231 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCSS------EEEEEES-HHHH
T ss_pred CcEEEEeecCCHHHHHHHhhCC------eEEEeeCCHHHH
Confidence 3899999999999999985533 556777665554
No 282
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=84.01 E-value=1.3 Score=35.32 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=40.1
Q ss_pred CCCeeEEEEeeeeecc-CCCCHHHHHHHHHHhcCCCeEEEEEec-cCCchhhhhhhccccccccceEEeCCCeEEEeeCH
Q 045799 119 PSSVDVVTLIFMLSAV-SPKKMPLILQNIKAVLKPDGYILVCDY-AIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSE 196 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~-~~~~~~~~l~~~~~~Lk~gG~l~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (231)
.+.||+|+.....-|+ .+ .+..+++|+|++++... ...++...... --.
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p--------~l~~~~a~~A~LvvEtaKfmvdLrKEq~~---------------------~F~ 270 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKP--------ELFQALAPDAVLVVETAKFMVDLRKEQLQ---------------------EFV 270 (289)
T ss_pred cCCCCEEEEhhhhHhhcch--------HHHHHhCCCCEEEEEcchhheeCCHHHHH---------------------HHH
Confidence 4689999987754443 22 26778899999988642 11122111000 013
Q ss_pred HHHHHHHHHcCceEEE
Q 045799 197 DFLSTLFLEAGFSTVD 212 (231)
Q Consensus 197 ~~l~~~l~~~Gf~~~~ 212 (231)
+.+.++++++||+.+.
T Consensus 271 ~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 271 KKVKELAKAAGFKPVT 286 (289)
T ss_pred HHHHHHHHHCCCcccc
Confidence 5789999999998654
No 283
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=83.99 E-value=2.9 Score=32.38 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHh
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.+++.+||-+|+++|....+..
T Consensus 154 ikpGsKVLYLGAasGttVSHvS 175 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVS 175 (317)
T ss_pred ecCCceEEEeeccCCceeehhh
Confidence 4889999999999999887776
No 284
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=83.77 E-value=1.7 Score=33.90 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 138 KMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 138 ~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
....+|..++..|.|||++++-|++.
T Consensus 190 sT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 190 STKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred HHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 45678999999999999999988766
No 285
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=83.66 E-value=3.4 Score=30.83 Aligned_cols=95 Identities=13% Similarity=0.200 Sum_probs=57.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~i 125 (231)
.++..|+|+|.--|.-+.+++..........+++++|++-..... ..+++.--+.
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIf 147 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIF 147 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEE
Confidence 456789999999998888887322111122345555544322110 1122223444
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchh
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFA 167 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~ 167 (231)
++...-|++ +...+.++.+..+|..|-++++.|....+..
T Consensus 148 vilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 148 VILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred EEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 455556666 5666778888899999999998876665544
No 286
>KOG2730 consensus Methylase [General function prediction only]
Probab=81.63 E-value=0.97 Score=34.41 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=18.2
Q ss_pred CCCeEEEEcCCCCcchHHHhcC
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSH 93 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~ 93 (231)
....|+|.-||-|+.+..++..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~ 115 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ 115 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh
Confidence 4568999999999999888843
No 287
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=80.26 E-value=8 Score=33.58 Aligned_cols=21 Identities=14% Similarity=0.490 Sum_probs=17.2
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.+..+|+|-.||+|.+.....
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~ 205 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAA 205 (489)
T ss_pred CCCCeecCCCCchhHHHHHHH
Confidence 355699999999999877665
No 288
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=79.09 E-value=4.8 Score=29.67 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=32.0
Q ss_pred CCCCCeeEEEEeeeeeccCC----------CCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 117 VNPSSVDVVTLIFMLSAVSP----------KKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 117 ~~~~~fD~ii~~~~l~~~~~----------~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+.+++.|+|+++.+|+-+.+ ++++.++.++..+|+++..++-.+..+
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 45778999999999987743 234566666667777776666554333
No 289
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=78.38 E-value=1.5 Score=35.28 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 137 KKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 137 ~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
....++|.++-..++||.+++|.|...
T Consensus 219 ~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 219 SKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 345688999999999999999987444
No 290
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=78.06 E-value=2.7 Score=33.76 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=14.9
Q ss_pred eCHHHHHHHHHHcCceEEEEEE
Q 045799 194 FSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 194 ~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
-+...+.+.|++.|-..+.+..
T Consensus 261 ssL~~l~~~L~~~~~~~~~~~e 282 (299)
T PF05971_consen 261 SSLKPLKKELKKLGATNYKVTE 282 (299)
T ss_dssp GGHHHHHHHHHHTT-SEEEEEE
T ss_pred ccHHHHHHHHHhcCCceEEEEE
Confidence 4678899999998865444433
No 291
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=74.92 E-value=9 Score=31.92 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=48.8
Q ss_pred CCCCCeEEEEcCCC-CcchHHHhcCccccccceeeeeec-------------------CCccc-ccC---CC-CCCCeeE
Q 045799 70 NGNPKVVLEVGCGA-GNTIFPLVSHSEFREERVNAFVCN-------------------VVNDD-LSR---NV-NPSSVDV 124 (231)
Q Consensus 70 ~~~~~~iLdvGcG~-G~~~~~l~~~~~~~~~~~~~~~~D-------------------~~~~~-~~~---~~-~~~~fD~ 124 (231)
..++.+||.+|||. |..+..++...... .++.++ ..... ... .+ ..+.+|+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~----~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~ 257 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAE----RVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDV 257 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC----EEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCE
Confidence 35678999999987 76776666332210 112221 11110 100 11 2236898
Q ss_pred EEEeeee-----------ecc--CCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 125 VTLIFML-----------SAV--SPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 125 ii~~~~l-----------~~~--~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|+..-.- .|. +..+....+..+.++|+++|.++...
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 8874311 111 22344668899999999999998763
No 292
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=74.35 E-value=6.3 Score=32.30 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=48.6
Q ss_pred CCCCCCCeEEEEcCC-CCcchHHHhcCccccccceeeeeecCCcccccC----------------CCC--CCCeeEEEEe
Q 045799 68 CPNGNPKVVLEVGCG-AGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------NVN--PSSVDVVTLI 128 (231)
Q Consensus 68 ~~~~~~~~iLdvGcG-~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------~~~--~~~fD~ii~~ 128 (231)
....++.+|+=+|+| .|.++.+++... +.+++.+|.+..-.+. ..+ .+.||+|+..
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~-----ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAM-----GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc-----CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC
Confidence 456789999999986 444666665321 2344555555432210 000 1238888875
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
-. ...+....+.|+++|.+++.-..
T Consensus 237 v~---------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 237 VG---------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred CC---------hhhHHHHHHHHhcCCEEEEECCC
Confidence 53 34677788899999999886433
No 293
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=74.30 E-value=9.8 Score=27.49 Aligned_cols=66 Identities=21% Similarity=0.217 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEeee
Q 045799 140 PLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQ 219 (231)
Q Consensus 140 ~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~ 219 (231)
..+++-+++.|.|||.+++. +.. |.........+ . + .....+-..|..+||+..+-++++..
T Consensus 66 ~~l~~~~~~~l~pg~~lfVe-Y~~-D~eT~~~L~~G--~------------p--p~~TrLG~~Ll~~GFtwfKdWYfPEG 127 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVE-YVE-DRETRRQLQRG--V------------P--PAETRLGFSLLKAGFTWFKDWYFPEG 127 (170)
T ss_dssp HHHHHHHHTT----SEEEEE--TT--HHHHHHHHTT------------------GGGSHHHHHHHTTT--EEEEEE--TT
T ss_pred HHHHHHHHHHhhhcCeEEEE-Eec-CHHHHHHHHcC--C------------C--cccchhHHHHHhCCcEEEeeeeccCc
Confidence 56788999999999999886 222 11111111111 0 0 12235778888899999988887654
Q ss_pred eecc
Q 045799 220 IKNR 223 (231)
Q Consensus 220 ~~~~ 223 (231)
-...
T Consensus 128 ~~EG 131 (170)
T PF06557_consen 128 GMEG 131 (170)
T ss_dssp TSTT
T ss_pred cccC
Confidence 4433
No 294
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=73.91 E-value=4.6 Score=35.02 Aligned_cols=87 Identities=18% Similarity=0.335 Sum_probs=50.3
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-----------------------cCCCCCCCeeEEEEee
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-----------------------SRNVNPSSVDVVTLIF 129 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-----------------------~~~~~~~~fD~ii~~~ 129 (231)
...|+=+|.|.|.+....+..+......++.+.++-.+..+ .-.-+.++.|++++-.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 56789999999998877763222222233333333222111 1122357889887632
Q ss_pred eeeccCC-CCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 130 MLSAVSP-KKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 130 ~l~~~~~-~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|..+.+ +=-..+|..+-..|||+|+.+-..
T Consensus 448 -LGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 448 -LGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred -hccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 333322 223467888899999999887543
No 295
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.87 E-value=7.9 Score=29.61 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=42.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcC---------------c---ccc-ccceeeeeecCCccccc-------CCCCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSH---------------S---EFR-EERVNAFVCNVVNDDLS-------RNVNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~---------------~---~~~-~~~~~~~~~D~~~~~~~-------~~~~~~~fD~ 124 (231)
.....||-.||..|.....++.. . ..+ ..+++...+|++.++.- ..+++++.|+
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~ 84 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDL 84 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEE
Confidence 45678999999999999888811 0 111 23566667777765432 1457899999
Q ss_pred EEEeeeeec
Q 045799 125 VTLIFMLSA 133 (231)
Q Consensus 125 ii~~~~l~~ 133 (231)
.+.+..-.|
T Consensus 85 L~NNAG~~C 93 (289)
T KOG1209|consen 85 LYNNAGQSC 93 (289)
T ss_pred EEcCCCCCc
Confidence 998765444
No 296
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=72.42 E-value=55 Score=31.86 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=62.8
Q ss_pred CCCeEEEEcCCCCcchHHHhcC----------------ccccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeecc-
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSH----------------SEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAV- 134 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~----------------~~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~- 134 (231)
.+..+||+|+|.-.-...+... ..+. ...+++..|.....+. ....+|.+.|.+.|...
T Consensus 822 ~~~~~lDLGTGPE~RiLsliP~~~pvtmvD~RP~ae~m~~w~-t~T~y~~~DYl~~~~~---~~~~~D~vtailSLGAAa 897 (1289)
T PF06016_consen 822 DPDHWLDLGTGPECRILSLIPPDTPVTMVDTRPFAEPMNCWN-TQTQYIQADYLSDAWW---NGTPFDAVTAILSLGAAA 897 (1289)
T ss_dssp CC-CEEEET--TT-CHHHCS-TTSEEEEEESS--SSSCCCCS-TTEEEEES-TTSCCGG---CC---SEEEECTCHHHHH
T ss_pred CcceEEEccCCccceeeeccCCCCceEEEecCCcccccchhh-hcceeeeeccccceeE---ecCCCCEEEEEeeehhhh
Confidence 4689999999988777666511 1111 3334555555544432 35689999999887753
Q ss_pred --CCCCHHHHHHHHHHhcCCCeEE-EEEeccCCchh---hhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 135 --SPKKMPLILQNIKAVLKPDGYI-LVCDYAIGDFA---QVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 135 --~~~~~~~~l~~~~~~Lk~gG~l-~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
.--.+...++.+.+.+++.|.- ++.-.+.+-.. -..+... ......+...+-+...+|.+..++.+++.+.
T Consensus 898 A~a~~tl~~~l~~~l~~~~~~~~~~l~lQLNcPl~~~~~v~~~LeI-d~~~~~Y~F~~~~R~EPY~~~~~l~~~i~~~ 974 (1289)
T PF06016_consen 898 ASANVTLDAGLQQFLSQCVQANVKRLWLQLNCPLDSSRSVRGLLEI-DTTNKTYVFPTLGRVEPYIDPDDLEQAIRAH 974 (1289)
T ss_dssp HHCT--HHHHHHHHHHHHHCTT-SEEEEE-B--SSSS--BTTTEEE-ETTTTEEEETTTTEEEEB--HHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHhCCccEEEEEecCCCCCCCCCCceEEE-eccccEEEcCCCCcCCCCCCHHHHHHHHHHH
Confidence 1236778888888888776652 22222222111 0001100 0111112223344456789999999998864
No 297
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=71.28 E-value=1.8 Score=30.80 Aligned_cols=20 Identities=45% Similarity=0.517 Sum_probs=13.9
Q ss_pred CCCeEEEEcCCCCcchHHHh
Q 045799 72 NPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~ 91 (231)
-...|||+|-|+|+.--+|.
T Consensus 28 ~~G~VlElGLGNGRTydHLR 47 (160)
T PF12692_consen 28 LPGPVLELGLGNGRTYDHLR 47 (160)
T ss_dssp --S-EEEE--TTSHHHHHHH
T ss_pred CCCceEEeccCCCccHHHHH
Confidence 34789999999999988887
No 298
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.49 E-value=5.3 Score=28.52 Aligned_cols=22 Identities=14% Similarity=0.428 Sum_probs=18.7
Q ss_pred CCCCCeEEEEcCCCCcchHHHh
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.++..+++|+|+|.|+.....+
T Consensus 70 ~n~~GklvDlGSGDGRiVlaaa 91 (199)
T KOG4058|consen 70 GNPKGKLVDLGSGDGRIVLAAA 91 (199)
T ss_pred CCCCCcEEeccCCCceeehhhh
Confidence 4666899999999999887776
No 299
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=67.72 E-value=5.2 Score=32.32 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHhcCCCeEEEEEeccCCch
Q 045799 137 KKMPLILQNIKAVLKPDGYILVCDYAIGDF 166 (231)
Q Consensus 137 ~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~ 166 (231)
++++.+|..+.++|+|||++++..+..-..
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfHSLED 246 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFHSLED 246 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 455788999999999999999988766543
No 300
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=67.68 E-value=6.5 Score=30.36 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=34.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------------C-C-CCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------------N-V-NPS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------------~-~-~~~ 120 (231)
.+..++||||.|....- .|....+| +.++++.|+.+..+.. . + .++
T Consensus 77 ~~~i~~LDIGvGAnCIY-PliG~~eY---gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE 152 (292)
T COG3129 77 GKNIRILDIGVGANCIY-PLIGVHEY---GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNE 152 (292)
T ss_pred cCceEEEeeccCccccc-ccccceee---cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccc
Confidence 46778999998865322 33322222 4455666665444321 1 1 357
Q ss_pred CeeEEEEeeeee
Q 045799 121 SVDVVTLIFMLS 132 (231)
Q Consensus 121 ~fD~ii~~~~l~ 132 (231)
.||+..|+=-||
T Consensus 153 ~yd~tlCNPPFh 164 (292)
T COG3129 153 RYDATLCNPPFH 164 (292)
T ss_pred eeeeEecCCCcc
Confidence 899999987776
No 301
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=66.99 E-value=2.3 Score=27.50 Aligned_cols=11 Identities=64% Similarity=1.546 Sum_probs=9.2
Q ss_pred EEEcCCCCcch
Q 045799 77 LEVGCGAGNTI 87 (231)
Q Consensus 77 LdvGcG~G~~~ 87 (231)
+|||||.|..-
T Consensus 7 IDIGcG~GNTm 17 (124)
T PF07101_consen 7 IDIGCGAGNTM 17 (124)
T ss_pred cccccCCCcch
Confidence 79999999754
No 302
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=65.92 E-value=6.2 Score=31.69 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHhcCCCeEEEEEeccCCch
Q 045799 137 KKMPLILQNIKAVLKPDGYILVCDYAIGDF 166 (231)
Q Consensus 137 ~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~ 166 (231)
++++.+|..+.++|+|||++.|..|..-..
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHSLED 250 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHSLED 250 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecchHH
Confidence 567889999999999999999988776543
No 303
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=64.70 E-value=4.6 Score=31.58 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHhcCCCeEEEEEeccCCchhh-hhhhcc-ccccc-cceEEeCCCeEEEeeCHHHHHHHHHH-cCceEEE
Q 045799 138 KMPLILQNIKAVLKPDGYILVCDYAIGDFAQ-VKLLDR-NQMIG-DSFYVRGDGTCSFYFSEDFLSTLFLE-AGFSTVD 212 (231)
Q Consensus 138 ~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~-~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gf~~~~ 212 (231)
....+++.+.+.++.||.+++.|++...... ..+... ..... ..+...+..-.....+...+.++.++ +|+++..
T Consensus 172 ~~~~~l~~l~~~~~~~g~~l~iDYG~~~~~~~~tLr~~~~H~~~~~~l~~pG~~DITa~VdF~~L~~~~~~~~g~~~~g 250 (252)
T PF02636_consen 172 GALQWLEQLAERLPKGGALLIIDYGYPAEENNGTLRAYYKHRVVDDPLENPGEQDITAHVDFSALKRAAREASGLEVLG 250 (252)
T ss_dssp CHHHHHHHHHHHCCC-EEEEEEEEEESCHHTT-S-EEESSSSEES-TTSSTTSSEEE--EEHHHHHHHHHHCTT-EEEE
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCCCCCCcCCCEEEEeCCcccCChhhCCCcccCchhccHHHHHHHHHhccCCEEeC
Confidence 4467899999999888999999988843221 101000 01111 11111233333455788889999955 4988764
No 304
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=64.09 E-value=6.7 Score=31.56 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHhcCCCeEEEEEeccCCch
Q 045799 137 KKMPLILQNIKAVLKPDGYILVCDYAIGDF 166 (231)
Q Consensus 137 ~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~ 166 (231)
++++.+|..+..+|+|||+++|..+..-..
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfHSlED 242 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFHSLED 242 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 456788999999999999999988766544
No 305
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=63.78 E-value=22 Score=30.42 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=31.0
Q ss_pred CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcC
Q 045799 116 NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLK 151 (231)
Q Consensus 116 ~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk 151 (231)
+-+..++++|++..+|...+.+-.+.+++.+.+.+.
T Consensus 129 gh~~~KvEliimGGTFta~~~~yqe~Fi~~~~~amn 164 (515)
T COG1243 129 GHTSDKVELIIMGGTFTALSLEYQEWFLKVALKAMN 164 (515)
T ss_pred CCCcceEEEEEecccccCCCHHHHHHHHHHHHHhhh
Confidence 345678999999999999987788889999998887
No 306
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=63.58 E-value=5.8 Score=31.25 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=18.6
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.+...++|+|||.|.++.+++
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~ 37 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVA 37 (259)
T ss_pred CCCCEEEEECCCchHHHHHHH
Confidence 556799999999999999887
No 307
>PHA01634 hypothetical protein
Probab=62.99 E-value=14 Score=25.70 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=18.8
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
-.+++|+|||.+-|.-+++++
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~ 47 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFL 47 (156)
T ss_pred ecCCEEEEecCCccchhhHHh
Confidence 567899999999999998887
No 308
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=62.86 E-value=58 Score=23.85 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=11.1
Q ss_pred HHHhcCCCeEEEEE
Q 045799 146 IKAVLKPDGYILVC 159 (231)
Q Consensus 146 ~~~~Lk~gG~l~i~ 159 (231)
....|||||.+.+.
T Consensus 115 At~HLK~GGLL~Lt 128 (236)
T KOG4022|consen 115 ATTHLKPGGLLQLT 128 (236)
T ss_pred HHhccCCCceeeec
Confidence 34789999999874
No 309
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=62.65 E-value=2.8 Score=30.97 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=11.7
Q ss_pred CeEEEEcCCCCcchHHHh
Q 045799 74 KVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~ 91 (231)
..|+.+|||--.....+.
T Consensus 80 ~qvV~LGaGlDTr~~Rl~ 97 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLD 97 (183)
T ss_dssp SEEEEET-TT--HHHHHH
T ss_pred cEEEEcCCCCCchHHHhh
Confidence 489999999877666665
No 310
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=61.91 E-value=24 Score=29.13 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=19.1
Q ss_pred CCCCCCeEEEEcCCCCcchHHHh
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~ 91 (231)
...++.-|+|-=.|||.+....+
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa 227 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAA 227 (421)
T ss_pred ccCCCCEEecCccccCceeeehh
Confidence 45889999999999998876665
No 311
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=60.91 E-value=39 Score=26.72 Aligned_cols=86 Identities=14% Similarity=0.191 Sum_probs=38.0
Q ss_pred CCCCCCeEEEEcCCCCc-------chHHHhcC---------ccccccceeeeeecCCcccccCCCCCCCeeEEEEeee--
Q 045799 69 PNGNPKVVLEVGCGAGN-------TIFPLVSH---------SEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFM-- 130 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~-------~~~~l~~~---------~~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~-- 130 (231)
..+..++||-+|.|+-. ..+.++.. .+|....-..+..|....+ ++.++|+||+-.-
T Consensus 58 aVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~Dc~t~~-----~~~k~DlIiSDmYd~ 132 (299)
T PF06460_consen 58 AVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSDADQSIVGDCRTYM-----PPDKFDLIISDMYDG 132 (299)
T ss_dssp ---TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-SSSEEEES-GGGEE-----ESS-EEEEEE----T
T ss_pred eeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccccCCceeccccccC-----CCCcccEEEEecccc
Confidence 45788999999987643 22222211 1111111122333333322 3579999999542
Q ss_pred -eecc-----CCCC-HHHHHHHHHHhcCCCeEEEEE
Q 045799 131 -LSAV-----SPKK-MPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 131 -l~~~-----~~~~-~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
..++ ..+. +..+..-+.+-|+-||.+++-
T Consensus 133 ~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK 168 (299)
T PF06460_consen 133 RTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK 168 (299)
T ss_dssp TS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence 1111 1122 344566677899999999874
No 312
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=60.91 E-value=54 Score=26.29 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=49.1
Q ss_pred CCeEEEEcCCCCcchHHHhc-CccccccceeeeeecCCcccccC---------------CCCCCCeeEEEEeeeeeccC-
Q 045799 73 PKVVLEVGCGAGNTIFPLVS-HSEFREERVNAFVCNVVNDDLSR---------------NVNPSSVDVVTLIFMLSAVS- 135 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~-~~~~~~~~~~~~~~D~~~~~~~~---------------~~~~~~fD~ii~~~~l~~~~- 135 (231)
.....-.|||||....-... ..+.+...+.++..|.-..-+-. .-.++++|.|+-.-.+.-+.
T Consensus 213 niDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dti~EGIGinRiT~ 292 (391)
T KOG1481|consen 213 NIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDTITEGIGINRITG 292 (391)
T ss_pred CcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcchhhhccccccccc
Confidence 45567789999986654431 12223345677777765432110 22456778776533222110
Q ss_pred ----CC---------CHHHHHHHHHHhcCCCeEEEEE
Q 045799 136 ----PK---------KMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 136 ----~~---------~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
-+ .-++.+...+.+|..+|.|+-+
T Consensus 293 Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGs 329 (391)
T KOG1481|consen 293 NFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGS 329 (391)
T ss_pred ccccchhhhhhheecChHHHHHHHHHhhhcCceEecc
Confidence 01 1145677788888999998754
No 313
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=60.81 E-value=12 Score=25.82 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=23.2
Q ss_pred EeeCHHHHHHHHHHcCceEEEEEEEee
Q 045799 192 FYFSEDFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 192 ~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
+=|+++++..++.++||+++..+....
T Consensus 94 ~Ky~~~~~~~l~~~aGl~~~~~w~d~~ 120 (127)
T PF10017_consen 94 YKYSPEEFEALAEQAGLEVEKRWTDPK 120 (127)
T ss_pred eCcCHHHHHHHHHHCCCeeEEEEECCC
Confidence 348999999999999999999877554
No 314
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=60.41 E-value=19 Score=31.39 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=27.4
Q ss_pred CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 120 SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+.+|+||......-- ..+..+.+++.+.+||||+++..-
T Consensus 247 ~gaDVVIetag~pg~--~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 247 KEVDIIITTALIPGK--PAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred CCCCEEEECCCCCcc--cCcchHHHHHHHhcCCCCEEEEEc
Confidence 358999987654321 234445699999999999987653
No 315
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=59.76 E-value=6.8 Score=29.57 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHhcCCCeEEEEE
Q 045799 138 KMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 138 ~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.+..++.+++|+|||||.+++.
T Consensus 34 ~~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 34 WMEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHhhcCCCeeEEEE
Confidence 3578899999999999999885
No 316
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=59.56 E-value=35 Score=27.56 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=46.6
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------CCCCCCeeEEEEeeeeeccCCCCHH
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------NVNPSSVDVVTLIFMLSAVSPKKMP 140 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------~~~~~~fD~ii~~~~l~~~~~~~~~ 140 (231)
...+=.|+|||....-++.-.+.....++++++|.....+-. .+-...+|.-+.-.+ ..++ -.
T Consensus 170 ~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~ip~~~~~~~iD~v-~~V~---d~ 245 (300)
T COG0031 170 VDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDLDLIDEV-IRVS---DE 245 (300)
T ss_pred CCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCCCCCcCCcccccccCceE-EEEC---HH
Confidence 677889999999776666332333345788888887533221 111122222222121 2332 24
Q ss_pred HHHHHHHHhcCCCeEEEEE
Q 045799 141 LILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 141 ~~l~~~~~~Lk~gG~l~i~ 159 (231)
..+..++++++..|.++=.
T Consensus 246 ~A~~~~r~La~~eGilvG~ 264 (300)
T COG0031 246 EAIATARRLAREEGLLVGI 264 (300)
T ss_pred HHHHHHHHHHHHhCeeecc
Confidence 5777788888888888643
No 317
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=58.28 E-value=6.1 Score=31.95 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHhcCCCeEEEEEeccCCch
Q 045799 137 KKMPLILQNIKAVLKPDGYILVCDYAIGDF 166 (231)
Q Consensus 137 ~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~ 166 (231)
+.+..+|..+..+|+|||++++..+..-..
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHSLED 247 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHSLED 247 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecchhh
Confidence 456788999999999999999988766543
No 318
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=55.85 E-value=29 Score=27.89 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=23.8
Q ss_pred CCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.+.+|+++.... ....+..+.++|+++|.++...
T Consensus 230 ~~~~D~vid~~g--------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 230 GGGFDVIFDFVG--------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred CCCceEEEECCC--------CHHHHHHHHHHhhcCCEEEEEC
Confidence 456887765321 1347788899999999998763
No 319
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=55.42 E-value=10 Score=33.69 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVN 110 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~ 110 (231)
.++..|||+||.+|.+..-....-. .+--++++|+.+
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~p---v~slivGvDl~p 79 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMP---VGSLIVGVDLVP 79 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCC---CCceEEEeeeee
Confidence 7788999999999998744331111 122345666653
No 320
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=52.54 E-value=41 Score=21.22 Aligned_cols=12 Identities=8% Similarity=0.174 Sum_probs=8.7
Q ss_pred CCeeEEEEeeee
Q 045799 120 SSVDVVTLIFML 131 (231)
Q Consensus 120 ~~fD~ii~~~~l 131 (231)
..+|+|+++--+
T Consensus 47 ~~~Dliist~~~ 58 (89)
T cd05566 47 DDADLIVSTTKV 58 (89)
T ss_pred CCCcEEEEcCCc
Confidence 578999886644
No 321
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=52.18 E-value=29 Score=29.87 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=47.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeee------eecCCcccccC----CCC-------CCCeeEEEEeeeeec
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAF------VCNVVNDDLSR----NVN-------PSSVDVVTLIFMLSA 133 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~------~~D~~~~~~~~----~~~-------~~~fD~ii~~~~l~~ 133 (231)
..+++|+=||||+=..+..+- ....+++++ .+|........ .|. -...|+|++ .
T Consensus 34 LkgKtIaIIGyGSqG~AqAlN----LrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVvi-----L 104 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLN----MRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVIN-----L 104 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCC----CccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEE-----c
Confidence 467999999999755543332 222244433 12222222211 110 135677777 3
Q ss_pred cCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 134 VSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 134 ~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+|++....+.+++...||||..|.++.
T Consensus 105 lPDt~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 105 TPDKQHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred CChHHHHHHHHHHHhhCCCCCEEEecC
Confidence 455556778899999999999998863
No 322
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=51.18 E-value=21 Score=23.69 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=7.3
Q ss_pred CCCCcchHHHh
Q 045799 81 CGAGNTIFPLV 91 (231)
Q Consensus 81 cG~G~~~~~l~ 91 (231)
||.|.++..++
T Consensus 4 ~G~g~~~~~i~ 14 (116)
T PF02254_consen 4 IGYGRIGREIA 14 (116)
T ss_dssp ES-SHHHHHHH
T ss_pred EcCCHHHHHHH
Confidence 56677887777
No 323
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=47.36 E-value=84 Score=24.46 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=16.0
Q ss_pred CCeEEEEcCCCCcchHHHh
Q 045799 73 PKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~ 91 (231)
..+|+|+|+|+|.++..++
T Consensus 19 ~~~ivE~GaG~G~La~diL 37 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDIL 37 (252)
T ss_dssp -EEEEEES-TTSHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHH
Confidence 4799999999999999888
No 324
>PRK08818 prephenate dehydrogenase; Provisional
Probab=46.69 E-value=37 Score=28.40 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=42.3
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccCC-CCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHh---
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSRN-VNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAV--- 149 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~--- 149 (231)
.+|.=||. +|.+...++...... .+..+++.|......... -.-...|+|+. ++|......+++++...
T Consensus 5 ~~I~IIGl-~GliGgslA~alk~~-~~~~V~g~D~~d~~~~~~~~~v~~aDlVil-----avPv~~~~~~l~~l~~~~~~ 77 (370)
T PRK08818 5 PVVGIVGS-AGAYGRWLARFLRTR-MQLEVIGHDPADPGSLDPATLLQRADVLIF-----SAPIRHTAALIEEYVALAGG 77 (370)
T ss_pred CEEEEECC-CCHHHHHHHHHHHhc-CCCEEEEEcCCccccCCHHHHhcCCCEEEE-----eCCHHHHHHHHHHHhhhhcC
Confidence 56777775 355665555221111 144667887643211110 01135799888 44545667788888876
Q ss_pred cCCCeEE
Q 045799 150 LKPDGYI 156 (231)
Q Consensus 150 Lk~gG~l 156 (231)
|+||..+
T Consensus 78 l~~~~iV 84 (370)
T PRK08818 78 RAAGQLW 84 (370)
T ss_pred CCCCeEE
Confidence 6776443
No 325
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=46.41 E-value=81 Score=26.02 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=24.8
Q ss_pred CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
.+|+++-... ....+..+.+.++++|.+.+.-..
T Consensus 238 g~D~vie~~G--------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 238 GADVVIEAVG--------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCCEEEECCC--------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 5787776443 234788889999999999886444
No 326
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=45.66 E-value=36 Score=19.32 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCceEEEE
Q 045799 197 DFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 197 ~~l~~~l~~~Gf~~~~~ 213 (231)
+++..+|+++||+....
T Consensus 2 ~el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred hHHHHHHHHCCCEEecC
Confidence 57899999999999865
No 327
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=44.89 E-value=75 Score=27.52 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=54.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------------CCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------------NVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------------~~~~~~f 122 (231)
..+.++|-+|-|.|.+...+... .....+..+.+|.+.-.... .-.+..|
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~--~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMS--LPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICP 371 (482)
T ss_pred cccCcEEEEecCCCccccceeee--cCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCC
Confidence 45678899999999998888633 22234444445443221110 1245689
Q ss_pred eEEEEee---eeecc--CCCCH--HHHHHHHHHhcCCCeEEEEEecc
Q 045799 123 DVVTLIF---MLSAV--SPKKM--PLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 123 D~ii~~~---~l~~~--~~~~~--~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
|+++.-- -.|-+ |+.++ +.++..++.+|.|.|.+++.-..
T Consensus 372 dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 372 DVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred cEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 9988611 12212 22232 46788999999999999886433
No 328
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=44.81 E-value=97 Score=22.46 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEee
Q 045799 139 MPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 139 ~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
-..++.-+++.|.|||.+++. +........... . +.+ .....+--.|.++||+..+-++++.
T Consensus 72 E~~l~~~l~~~lspg~~lfVe-Yv~DrET~~~lq-k-------------G~~---p~atrLGfeL~k~GftwfkdWY~PE 133 (192)
T COG4353 72 EVKLYKVLYNFLSPGGKLFVE-YVRDRETRYRLQ-K-------------GKP---PVATRLGFELLKAGFTWFKDWYFPE 133 (192)
T ss_pred HHHHHHHHHHhcCCCCceEEE-EEechhHHHHHH-c-------------CCC---CccchhhHHHHhCcceeeeeeeccC
Confidence 356788899999999999885 222222111111 0 000 1123455666678888888888776
Q ss_pred eeeccccc
Q 045799 219 QIKNRSQD 226 (231)
Q Consensus 219 ~~~~~~~~ 226 (231)
.-.....+
T Consensus 134 G~mEGg~K 141 (192)
T COG4353 134 GGMEGGPK 141 (192)
T ss_pred cccccccc
Confidence 65554443
No 329
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=44.31 E-value=22 Score=29.76 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVV 109 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~ 109 (231)
..-..++|+|.|.|.++..+.-+. ++.+..+|-+
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y-----~lsV~aIegs 185 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY-----GLSVKAIEGS 185 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc-----CceEEEeccc
Confidence 456789999999999998887333 3445555544
No 330
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=44.12 E-value=93 Score=24.83 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=47.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------CC----CCCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------NV----NPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------~~----~~~~fD~ii~~~~l~~~ 134 (231)
.+++...|+|.-+|.++..|... ++.+..+|.-...... .| .....|-.+|- .+
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr------~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCD----mV 279 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKR------NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCD----MV 279 (358)
T ss_pred cCCceeeecccCCCccchhhhhc------ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEee----hh
Confidence 67899999999999999888744 4555556543211100 11 24567777763 44
Q ss_pred CCCCHHHHHHHHHHhcCCC
Q 045799 135 SPKKMPLILQNIKAVLKPD 153 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~g 153 (231)
+.+.++-+.+...|..|
T Consensus 280 --EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 280 --EKPARVAALIAKWLVNG 296 (358)
T ss_pred --cCcHHHHHHHHHHHHcc
Confidence 78888888888888655
No 331
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=42.51 E-value=25 Score=28.51 Aligned_cols=82 Identities=12% Similarity=0.187 Sum_probs=42.4
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---CCC--CCCeeEEEEeeeeeccCCCCHHHHHH
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---NVN--PSSVDVVTLIFMLSAVSPKKMPLILQ 144 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---~~~--~~~fD~ii~~~~l~~~~~~~~~~~l~ 144 (231)
..++..++|.--|.|+.+..++.... ...++++|..+.++.. .+. .+.|.++-..+ .++...+.
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~----~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F-------~~l~~~l~ 86 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLP----NGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNF-------SNLDEYLK 86 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-T----T-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-G-------GGHHHHHH
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCC----CCeEEEecCCHHHHHHHHHHHhhccceEEEEeccH-------HHHHHHHH
Confidence 36778999999999999999995433 2577888887766632 111 34555554433 44444444
Q ss_pred HHHHhcCCCeEEEEEeccCC
Q 045799 145 NIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 145 ~~~~~Lk~gG~l~i~~~~~~ 164 (231)
.....-+.+|++ .|.+.+
T Consensus 87 ~~~~~~~~dgiL--~DLGvS 104 (310)
T PF01795_consen 87 ELNGINKVDGIL--FDLGVS 104 (310)
T ss_dssp HTTTTS-EEEEE--EE-S--
T ss_pred HccCCCccCEEE--EccccC
Confidence 442222445555 344443
No 332
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=42.22 E-value=53 Score=26.56 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=39.3
Q ss_pred CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+-+..|.++...+-.++++.....++.++.+.+.+|..+++..
T Consensus 324 ~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRt 366 (414)
T COG5379 324 PAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRT 366 (414)
T ss_pred CCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEec
Confidence 5578999999999999998999999999999999999999864
No 333
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=41.58 E-value=59 Score=21.04 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=24.8
Q ss_pred EcCCCCcchHHHhcC---cccccc--ceeeeeecCCcccccCCCCCCCeeEEEEeee
Q 045799 79 VGCGAGNTIFPLVSH---SEFREE--RVNAFVCNVVNDDLSRNVNPSSVDVVTLIFM 130 (231)
Q Consensus 79 vGcG~G~~~~~l~~~---~~~~~~--~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~ 130 (231)
+-||+|.-+..+++. ..+... .+++..++++. +.. ....+|+|+...-
T Consensus 7 vvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e--~~~--~~~~~D~iv~t~~ 59 (94)
T PRK10310 7 VACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNE--IET--YMDGVHLICTTAR 59 (94)
T ss_pred EECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHH--Hhh--hcCCCCEEEECCc
Confidence 678999877777521 111112 23445555542 111 1145788887653
No 334
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=41.56 E-value=39 Score=28.20 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=40.1
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcC
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLK 151 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk 151 (231)
...+|.=|| |.|.++..++... ...+..+.+.|......... .-...|+|+. ++|......++.++.. ++
T Consensus 97 ~~~~I~IiG-G~GlmG~slA~~l--~~~G~~V~~~d~~~~~~~~~-~~~~aDlVil-----avP~~~~~~~~~~l~~-l~ 166 (374)
T PRK11199 97 DLRPVVIVG-GKGQLGRLFAKML--TLSGYQVRILEQDDWDRAED-ILADAGMVIV-----SVPIHLTEEVIARLPP-LP 166 (374)
T ss_pred ccceEEEEc-CCChhhHHHHHHH--HHCCCeEEEeCCCcchhHHH-HHhcCCEEEE-----eCcHHHHHHHHHHHhC-CC
Confidence 346788787 4566776666221 12234455666532110000 0134687777 4454556777888777 76
Q ss_pred CCeEE
Q 045799 152 PDGYI 156 (231)
Q Consensus 152 ~gG~l 156 (231)
||.++
T Consensus 167 ~~~iv 171 (374)
T PRK11199 167 EDCIL 171 (374)
T ss_pred CCcEE
Confidence 65433
No 335
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=41.08 E-value=26 Score=25.25 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=23.7
Q ss_pred CCeeEEEEeeeeeccC--CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 120 SSVDVVTLIFMLSAVS--PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~--~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
..||.||. ++| .++..-.|..+...|++||.+++.-
T Consensus 68 ~~~D~vvl-----y~PKaK~e~~~lL~~l~~~L~~g~~i~vVG 105 (155)
T PF08468_consen 68 QDFDTVVL-----YWPKAKAEAQYLLANLLSHLPPGTEIFVVG 105 (155)
T ss_dssp TT-SEEEE-----E--SSHHHHHHHHHHHHTTS-TT-EEEEEE
T ss_pred cCCCEEEE-----EccCcHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 46999998 445 2344566889999999999998873
No 336
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=40.79 E-value=30 Score=27.99 Aligned_cols=40 Identities=5% Similarity=0.030 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS 114 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~ 114 (231)
.++..++|.-+|.|..+..++... . ...++++|..+..+.
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l--~--~g~vigiD~D~~Al~ 58 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQL--G--TGRLIGIDRDPQAIA 58 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhC--C--CCEEEEEcCCHHHHH
Confidence 567899999999999999998543 2 146788998876653
No 337
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=40.42 E-value=25 Score=27.28 Aligned_cols=57 Identities=25% Similarity=0.238 Sum_probs=29.7
Q ss_pred CeEEEEcCCCCcchHHHhc---------------------------Ccc---ccccceeeeeecCCcccccCCCCCCCee
Q 045799 74 KVVLEVGCGAGNTIFPLVS---------------------------HSE---FREERVNAFVCNVVNDDLSRNVNPSSVD 123 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~---------------------------~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~fD 123 (231)
.+|||.-+|-|..+.-++. ... ....+++++..|.....- .++++||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~---~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR---QPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC---CHSS--S
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh---hcCCCCC
Confidence 4899999999999987761 000 112356666666653321 4578999
Q ss_pred EEEEeeeeec
Q 045799 124 VVTLIFMLSA 133 (231)
Q Consensus 124 ~ii~~~~l~~ 133 (231)
+|++-=+|.+
T Consensus 154 VVY~DPMFp~ 163 (234)
T PF04445_consen 154 VVYFDPMFPE 163 (234)
T ss_dssp EEEE--S---
T ss_pred EEEECCCCCC
Confidence 9999655554
No 338
>PRK10556 hypothetical protein; Provisional
Probab=40.17 E-value=40 Score=22.02 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=18.0
Q ss_pred eeCHHHHHHHHHHcCceEEEEE
Q 045799 193 YFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 193 ~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
|+.++++.+.|+++||+...+.
T Consensus 2 YLRPDEVArVLe~aGF~~D~vt 23 (111)
T PRK10556 2 YLRPDEVARVLEKAGFTVDVVT 23 (111)
T ss_pred CcChHHHHHHHHhcCceEEEee
Confidence 3567899999999999877653
No 339
>PF10094 DUF2332: Uncharacterized protein conserved in bacteria (DUF2332); InterPro: IPR011200 This is a family of uncharacterised bacterial proteins.
Probab=40.13 E-value=72 Score=26.39 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=25.0
Q ss_pred CCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCC
Q 045799 117 VNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKP 152 (231)
Q Consensus 117 ~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~ 152 (231)
.+.+.--+|+-+.++.++|.+...++...+.+.-+.
T Consensus 257 ~p~~~~~vV~hT~v~~ylp~~~r~~~~~~i~~~g~~ 292 (343)
T PF10094_consen 257 APPGATVVVFHTIVWQYLPAEERAAFEAAIREAGAR 292 (343)
T ss_pred CCCCCeEEEEeHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 456677788888888899866666666666655443
No 340
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=39.76 E-value=58 Score=21.19 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=10.5
Q ss_pred EcCCCCcchHHHh
Q 045799 79 VGCGAGNTIFPLV 91 (231)
Q Consensus 79 vGcG~G~~~~~l~ 91 (231)
+.||+|.-+..+.
T Consensus 6 ~aCG~GvgSS~~i 18 (93)
T COG3414 6 AACGNGVGSSTMI 18 (93)
T ss_pred EECCCCccHHHHH
Confidence 5699998887776
No 341
>PRK10742 putative methyltransferase; Provisional
Probab=39.76 E-value=35 Score=26.74 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.3
Q ss_pred CCCC--eEEEEcCCCCcchHHHh
Q 045799 71 GNPK--VVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~--~iLdvGcG~G~~~~~l~ 91 (231)
+++. +|||+-+|+|..+..++
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~la 107 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLA 107 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHH
Confidence 4555 89999999999999888
No 342
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.45 E-value=1.9e+02 Score=22.89 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=52.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceee--------------------------------eeecCCcccccCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNA--------------------------------FVCNVVNDDLSRNVN 118 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~--------------------------------~~~D~~~~~~~~~~~ 118 (231)
.+..+||.+|-|.=.++..++.+..-+..++.. .++|+..-.....+.
T Consensus 55 s~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv~sl~~~~~~~ 134 (282)
T KOG4174|consen 55 SKKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTILHGVDVTSLKFHADLR 134 (282)
T ss_pred cccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceEecccceeEEeccccc
Confidence 556889999988777777777222211112222 234444333322455
Q ss_pred CCCeeEEEEeeeeeccCC---------------CCHHHHHHHHHHhcC-CCeEEEEE
Q 045799 119 PSSVDVVTLIFMLSAVSP---------------KKMPLILQNIKAVLK-PDGYILVC 159 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~~---------------~~~~~~l~~~~~~Lk-~gG~l~i~ 159 (231)
.+.||-||.++ .|-.. +=...+++.+...|+ ..|.+.+.
T Consensus 135 ~~~~d~IiFNF--PH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~it 189 (282)
T KOG4174|consen 135 LQRYDNIIFNF--PHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHIT 189 (282)
T ss_pred ccccceEEEcC--CCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 67899999874 33210 012467888999999 67998886
No 343
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=39.39 E-value=41 Score=27.77 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=29.2
Q ss_pred CCeeEEEEeeeeeccC--CCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 120 SSVDVVTLIFMLSAVS--PKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~--~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
..||.|+. ++| .......|..+.+.|+|||.+++.-...
T Consensus 75 ~~~d~~~~-----~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~~ 115 (342)
T PRK09489 75 ADCDTLIY-----YWPKNKQEAQFQLMNLLSLLPVGTDIFVVGENR 115 (342)
T ss_pred CCCCEEEE-----ECCCCHHHHHHHHHHHHHhCCCCCEEEEEEecc
Confidence 47898887 445 2355677899999999999999874333
No 344
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=38.23 E-value=1.1e+02 Score=21.88 Aligned_cols=20 Identities=35% Similarity=0.316 Sum_probs=12.8
Q ss_pred CCCeEEEEcCCCCcchHHHh
Q 045799 72 NPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~ 91 (231)
...++||+-+|.|-.-..+.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp 23 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLP 23 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHH
T ss_pred CceeEEecCCCCCCcccccH
Confidence 34579999999998765443
No 345
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=38.23 E-value=19 Score=31.08 Aligned_cols=83 Identities=14% Similarity=0.064 Sum_probs=50.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc-------------------------cccceeeeeecCCcccccCCCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF-------------------------REERVNAFVCNVVNDDLSRNVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~-------------------------~~~~~~~~~~D~~~~~~~~~~~~~~fD~i 125 (231)
.++.+|||.=|++|..++.++.+..- ....+.....|....|...+-....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 45678999999999999888722110 00111111222222233223345677766
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
=. -|--....+|..+.+.++.||.+.+.
T Consensus 188 DL------DPyGs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 188 DL------DPYGSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ec------CCCCCccHHHHHHHHHhhcCCEEEEE
Confidence 33 22345667899999999999999886
No 346
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=37.91 E-value=58 Score=21.61 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=15.2
Q ss_pred eeCHHHHHHHHHHcCceEEEE
Q 045799 193 YFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 193 ~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
|+.++++.+.|+++||+...+
T Consensus 2 ylrpdeva~vle~~gf~~d~v 22 (111)
T PF09400_consen 2 YLRPDEVARVLEKAGFERDYV 22 (111)
T ss_dssp ---HHHHHHHHHHTT-EEEEE
T ss_pred CcChHHHHHHHHhcCceEEEe
Confidence 356889999999999987765
No 347
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=37.16 E-value=93 Score=25.99 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=29.6
Q ss_pred CCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCC
Q 045799 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~ 164 (231)
...+|. ..++.|+ ++...++......++++|.+++.++...
T Consensus 277 w~~~~~---~~~~~~~--~~~~~~f~~~~~~~~~~~~v~~~e~~~~ 317 (364)
T KOG1269|consen 277 WNTPLT---RDTITHW--QDKSALFRGRVATLKPGGKVLILEYIRG 317 (364)
T ss_pred cccccc---hhheeec--ccccHHHHhHhhccCcCceEEehhhcCc
Confidence 344454 4556677 5677788889999999999998765443
No 348
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=37.03 E-value=16 Score=31.14 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=13.6
Q ss_pred CCCeEEEEcCCCCcchH
Q 045799 72 NPKVVLEVGCGAGNTIF 88 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~ 88 (231)
....+||||+|||.++.
T Consensus 66 gkv~vLdigtGTGLLSm 82 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSM 82 (636)
T ss_pred ceEEEEEccCCccHHHH
Confidence 34569999999997764
No 349
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=35.65 E-value=78 Score=22.91 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=25.0
Q ss_pred CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
+.+.+|++++.. . ..+......|+|||++++....
T Consensus 54 ~~~~~Dilv~l~---------~-~~~~~~~~~l~~~g~vi~ns~~ 88 (173)
T PF01558_consen 54 PVGEADILVALD---------P-EALERHLKGLKPGGVVIINSSL 88 (173)
T ss_dssp -TSSESEEEESS---------H-HHHHHCGTTCETTEEEEEETTT
T ss_pred ccCCCCEEEEcC---------H-HHHHHHhcCcCcCeEEEEECCC
Confidence 347999999953 3 3444777889999999886533
No 350
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=35.53 E-value=31 Score=25.92 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=25.0
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcc
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVND 111 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~ 111 (231)
..++..|||.=||+|..+.......+ +++++|+.+.
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R------~~ig~E~~~~ 224 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGR------RYIGIEIDEE 224 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT-------EEEEEESSHH
T ss_pred hccceeeehhhhccChHHHHHHHcCC------eEEEEeCCHH
Confidence 47789999999999998877765432 5788888754
No 351
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=35.50 E-value=1.7e+02 Score=21.22 Aligned_cols=39 Identities=28% Similarity=0.481 Sum_probs=24.0
Q ss_pred CCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.++||+|++-=-+ +..+....+...+.-++++++.+++.
T Consensus 84 ~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 84 KGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred CCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEe
Confidence 4688888873322 33334445556666666787777765
No 352
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=35.01 E-value=68 Score=18.83 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEE
Q 045799 137 KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTV 211 (231)
Q Consensus 137 ~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 211 (231)
++....|.++..+|...|.-+..-....... .... .-..-+.+...+.|+++||++.
T Consensus 9 ~d~pG~La~v~~~l~~~~inI~~i~~~~~~~------------~~~~------rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 9 ENKPGRLAAVTEILSEAGINIRALSIADTSE------------FGIL------RLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred cCCCChHHHHHHHHHHCCCCEEEEEEEecCC------------CCEE------EEEECCHHHHHHHHHHCCCEEE
Confidence 5667788889999988777554322111100 0000 0112356688999999999864
No 353
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=34.83 E-value=2.3e+02 Score=22.88 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=40.9
Q ss_pred CCeEEEEcCCCCcchHHHhcCcccccc--ceeeeeecCCcccccC-CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHh
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREE--RVNAFVCNVVNDDLSR-NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAV 149 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~--~~~~~~~D~~~~~~~~-~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~ 149 (231)
...|+=+|++.|.+...|... |..- .++++.+|..+-.... +.. ++.+.. .++ .+..+.++++.
T Consensus 59 ~~~VVYiGsApG~Hi~~L~~l--f~~~~~~i~wvLiDp~~f~~~l~~l~----~v~l~~---~ff----tee~~~~~~~~ 125 (294)
T PF01358_consen 59 PVTVVYIGSAPGTHIPFLFDL--FPDLKVPIKWVLIDPRPFCISLEELS----NVTLIQ---RFF----TEEYARRLRDK 125 (294)
T ss_dssp -EEEEEES-SS-HHHHHHHHH--HHHTT--EEEEEEESS---GGGTT-T----TEEEEE---S-------HHHHHHHHHH
T ss_pred ceEEEEecCCCcchHHHHHHH--HHhcCCceEEEEECCcchhhhhcccC----cEEeeh---hhC----CHHHHHHHHhh
Confidence 368999999999999888733 3332 3678888987554321 111 122222 233 23466677777
Q ss_pred cCCCeEEEEEeccCC
Q 045799 150 LKPDGYILVCDYAIG 164 (231)
Q Consensus 150 Lk~gG~l~i~~~~~~ 164 (231)
+.+ .+++|+|....
T Consensus 126 ~~~-~illISDIRS~ 139 (294)
T PF01358_consen 126 LNL-KILLISDIRSG 139 (294)
T ss_dssp HTT-EEEEEE-----
T ss_pred cCC-CeEEEEecccC
Confidence 766 88888876443
No 354
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=34.74 E-value=59 Score=25.95 Aligned_cols=28 Identities=11% Similarity=0.319 Sum_probs=18.3
Q ss_pred eeeccC--CCCHHHHHHHHHHhcCCCeEEE
Q 045799 130 MLSAVS--PKKMPLILQNIKAVLKPDGYIL 157 (231)
Q Consensus 130 ~l~~~~--~~~~~~~l~~~~~~Lk~gG~l~ 157 (231)
++.+++ ++....+++++...++++.+++
T Consensus 87 Vieav~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 87 IIEAIVESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred EEEcCccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 344554 3344567888888888877654
No 355
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=34.50 E-value=41 Score=21.24 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHcCceEEEEEEE
Q 045799 195 SEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 195 ~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
....+.+.|++.||+++.+...
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCc
Confidence 3468999999999999998643
No 356
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=34.21 E-value=32 Score=28.83 Aligned_cols=90 Identities=11% Similarity=0.163 Sum_probs=50.9
Q ss_pred CCCCCCCeEEEEcCCCCcchHHHhcCcccc--------------------------------ccceeeeeecCCcccccC
Q 045799 68 CPNGNPKVVLEVGCGAGNTIFPLVSHSEFR--------------------------------EERVNAFVCNVVNDDLSR 115 (231)
Q Consensus 68 ~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~--------------------------------~~~~~~~~~D~~~~~~~~ 115 (231)
++.+++..-.|+|.|-|.....+++..... ...+..+..+........
T Consensus 188 l~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~ 267 (419)
T KOG3924|consen 188 LKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVT 267 (419)
T ss_pred hccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHH
Confidence 346788899999999999998887322111 011111111111111100
Q ss_pred CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 116 NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 116 ~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
. -....++|++.++.- + ++...-+.++..-+++|-.++-...
T Consensus 268 e-I~~eatvi~vNN~~F--d-p~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 268 E-IQTEATVIFVNNVAF--D-PELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred H-HhhcceEEEEecccC--C-HHHHHhhHHHHhhCCCcceEecccc
Confidence 1 123567777777532 2 4555556688888889888876543
No 357
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=34.07 E-value=1.5e+02 Score=22.01 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=22.6
Q ss_pred CCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.++.|++++.. ... +.+....|+|||.+++.+
T Consensus 65 ~~~~D~lva~d---------~~~-~~~~~~~l~~gg~ii~ns 96 (197)
T PRK06274 65 EGQADLLLALE---------PAE-VARNLHFLKKGGKIIVNA 96 (197)
T ss_pred CCCCCEEEEcC---------HHH-HHHHHhhcCCCcEEEEEC
Confidence 56889999854 222 245567799999988764
No 358
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=33.82 E-value=2.3e+02 Score=22.79 Aligned_cols=81 Identities=21% Similarity=0.192 Sum_probs=51.4
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCC
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKP 152 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~ 152 (231)
+..|+=+|+|.|.+...|..+..--.-.++.+.+|..+-... +..-+ ++-+... .+ -+..++.+++.+.+
T Consensus 61 g~~VVYiGSApG~HI~~L~~lf~~lg~~ikw~LiDp~~h~~~--Le~l~-nV~Li~~---f~----de~~i~~~r~~~~~ 130 (300)
T PHA03108 61 GSTIVYIGSAPGTHIRYLRDHFYSLGVVIKWMLIDGRKHDPI--LNGLR-DVTLVTR---FV----DEAYLRRLKKQLHP 130 (300)
T ss_pred CceEEEecCCCCccHHHHHHHHHhcCCCeEEEEECCCcccHh--hcCCC-cEEeeHh---hc----CHHHHHHHHHhccC
Confidence 569999999999999888743221113567888887654321 11111 2222211 23 12377888888989
Q ss_pred CeEEEEEeccC
Q 045799 153 DGYILVCDYAI 163 (231)
Q Consensus 153 gG~l~i~~~~~ 163 (231)
.-+++|+|...
T Consensus 131 ~~illISDIRS 141 (300)
T PHA03108 131 SKIILISDIRS 141 (300)
T ss_pred CCEEEEEeecc
Confidence 99999998744
No 359
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=33.56 E-value=1.6e+02 Score=22.53 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEE
Q 045799 138 KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 138 ~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
....+++.+.+.++||.++++.+...... -....++..|++.||+.+.+.
T Consensus 172 ~~~~~~~~v~~~~~~g~IiLlHd~~~~t~---------------------------~aL~~ii~~lk~~Gy~fvtl~ 221 (224)
T TIGR02884 172 GWQYAYKQIMKKIHPGAILLLHAVSKDNA---------------------------EALDKIIKDLKEQGYTFKSLD 221 (224)
T ss_pred CHHHHHHHHHhcCCCCcEEEEECCCCCHH---------------------------HHHHHHHHHHHHCCCEEEEhH
Confidence 34567778888888888777764211100 124578888999999988754
No 360
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.55 E-value=55 Score=27.63 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=36.1
Q ss_pred CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCC
Q 045799 116 NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 116 ~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~ 164 (231)
.|..+.||+||+-..=.|--+..+-.-+..+.+.++|+-++++.|-+..
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG 226 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG 226 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 4567899999996654444334555567788899999999999986665
No 361
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=33.32 E-value=1.7e+02 Score=20.38 Aligned_cols=80 Identities=11% Similarity=0.181 Sum_probs=40.0
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccCC--------C-CC----CCeeEEEEeeeeeccCCCC
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSRN--------V-NP----SSVDVVTLIFMLSAVSPKK 138 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~~--------~-~~----~~fD~ii~~~~l~~~~~~~ 138 (231)
+..+|+|||-|.=......+. ..++.++++|+.+...... + |+ +..|+|.+.- |+.+
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~-----~~G~dV~~tDi~~~~a~~g~~~v~DDif~P~l~iY~~a~lIYSiR-----PP~E 82 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLK-----ERGFDVIATDINPRKAPEGVNFVVDDIFNPNLEIYEGADLIYSIR-----PPPE 82 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHH-----HHS-EEEEE-SS-S----STTEE---SSS--HHHHTTEEEEEEES-------TT
T ss_pred CCCcEEEECcCCCHHHHHHHH-----HcCCcEEEEECcccccccCcceeeecccCCCHHHhcCCcEEEEeC-----CChH
Confidence 345999999987554433332 1245667777765521110 0 11 3578887754 5578
Q ss_pred HHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 139 MPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 139 ~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
++..+.++++.+ |.-+++...+.
T Consensus 83 l~~~il~lA~~v--~adlii~pL~~ 105 (127)
T PF03686_consen 83 LQPPILELAKKV--GADLIIRPLGG 105 (127)
T ss_dssp SHHHHHHHHHHH--T-EEEEE-BTT
T ss_pred HhHHHHHHHHHh--CCCEEEECCCC
Confidence 888888888755 45577765444
No 362
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=33.25 E-value=1.7e+02 Score=21.50 Aligned_cols=53 Identities=19% Similarity=0.180 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEE
Q 045799 137 KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 137 ~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
.....+++.+.+.+++|.++++.+.. .... . .-....+...|++.||+.+.+.
T Consensus 136 ~~~~~i~~~~~~~~~~g~Iil~Hd~~--~~~~---t--------------------~~~l~~~i~~l~~~Gy~~vtl~ 188 (191)
T TIGR02764 136 PGVESIVDRVVKNTKPGDIILLHASD--SAKQ---T--------------------VKALPTIIKKLKEKGYEFVTIS 188 (191)
T ss_pred CCHHHHHHHHHhcCCCCCEEEEeCCC--CcHh---H--------------------HHHHHHHHHHHHHCCCEEEEHH
Confidence 35667888888889998877766411 0000 0 0123578888889999988653
No 363
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=33.24 E-value=1.3e+02 Score=24.61 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=57.2
Q ss_pred eecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEE
Q 045799 105 VCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYV 184 (231)
Q Consensus 105 ~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (231)
.+|.+...+... -++=+-++.-.++.+ ..++.-+..++-.-+.|-..+++.+.................+...|.
T Consensus 55 ~iD~sTtvlG~~---i~~Pi~iapTa~qkm--a~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYv 129 (363)
T KOG0538|consen 55 KIDTSTTVLGQK---ISAPIMIAPTAMQKM--AHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYV 129 (363)
T ss_pred cccccceecccc---ccceeEEcchHHHhc--cCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEe
Confidence 456665554221 123344444456666 334444445555555666666776666555443222111111111222
Q ss_pred eCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEeeeeeccccc
Q 045799 185 RGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQD 226 (231)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~~~~~~ 226 (231)
..+ .--.+.+.+-.+++||+.+-+.+....+-+|..+
T Consensus 130 ykd-----r~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D 166 (363)
T KOG0538|consen 130 YKD-----RDITEQLVKRAEKAGFKALVLTVDTPRLGRRESD 166 (363)
T ss_pred cCc-----hHHHHHHHHHHHHcCceEEEEEeccccccCchhh
Confidence 111 1122456777788999999988877766666443
No 364
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=32.54 E-value=45 Score=26.63 Aligned_cols=76 Identities=17% Similarity=0.071 Sum_probs=42.5
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------CCCCCCeeEEEEeeeeeccCCCC
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------NVNPSSVDVVTLIFMLSAVSPKK 138 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------~~~~~~fD~ii~~~~l~~~~~~~ 138 (231)
.+|+=+| .|.++..++...........+++.|.+...... .......|+|+.. +|-..
T Consensus 4 ~~v~IvG--~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~Viva-----vPi~~ 76 (279)
T COG0287 4 MKVGIVG--LGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVA-----VPIEA 76 (279)
T ss_pred cEEEEEC--CchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEe-----ccHHH
Confidence 4566666 455666665222222224445666665432211 0122456888874 44456
Q ss_pred HHHHHHHHHHhcCCCeEE
Q 045799 139 MPLILQNIKAVLKPDGYI 156 (231)
Q Consensus 139 ~~~~l~~~~~~Lk~gG~l 156 (231)
...+++++...|++|..+
T Consensus 77 ~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 77 TEEVLKELAPHLKKGAIV 94 (279)
T ss_pred HHHHHHHhcccCCCCCEE
Confidence 678889998888887544
No 365
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=32.07 E-value=1.2e+02 Score=24.70 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCCeEEEEEe
Q 045799 140 PLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 140 ~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
...+....++|+++|.+++.-
T Consensus 236 ~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 236 QSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred HHHHHHHHHhCcCCcEEEEEe
Confidence 457788889999999998754
No 366
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=31.68 E-value=1.3e+02 Score=24.37 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCCeEEEEEec
Q 045799 141 LILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 141 ~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
..+....+.|+++|.+++.-.
T Consensus 235 ~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 235 GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHHHHHHhhCCCcEEEEEec
Confidence 367888899999999987543
No 367
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=31.59 E-value=1.1e+02 Score=19.30 Aligned_cols=26 Identities=8% Similarity=0.032 Sum_probs=21.8
Q ss_pred eCHHHHHHHHHHcCceEEEEEEEeee
Q 045799 194 FSEDFLSTLFLEAGFSTVDINIHLKQ 219 (231)
Q Consensus 194 ~~~~~l~~~l~~~Gf~~~~~~~~~~~ 219 (231)
.++..+.+.|+..||.++.+..+++.
T Consensus 50 ~~Pr~VLnKLE~~G~kVvsmtgvgqt 75 (83)
T PF06399_consen 50 DPPRVVLNKLEKMGYKVVSMTGVGQT 75 (83)
T ss_dssp S-HHHHHHHHHHTTEEEEEEEEETTE
T ss_pred CChHHHHHHHHhcCeEEEEEeccCce
Confidence 56788999999999999999887764
No 368
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=31.53 E-value=45 Score=23.95 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=34.6
Q ss_pred CCCcchHHHhcCccccccceeeeeecCCcccccC----------CCC--CCCeeEEEEeeeeeccCC-CCHHHHHHH--H
Q 045799 82 GAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------NVN--PSSVDVVTLIFMLSAVSP-KKMPLILQN--I 146 (231)
Q Consensus 82 G~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------~~~--~~~fD~ii~~~~l~~~~~-~~~~~~l~~--~ 146 (231)
|.|.+...++.+ ....+..+...|.++..... ... -+..|+|+. +++. +..+.++.. +
T Consensus 8 GlG~mG~~~a~~--L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~-----~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 8 GLGNMGSAMARN--LAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVIL-----CVPDDDAVEAVLFGENI 80 (163)
T ss_dssp --SHHHHHHHHH--HHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE------SSSHHHHHHHHHCTTH
T ss_pred chHHHHHHHHHH--HHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEe-----ecccchhhhhhhhhhHH
Confidence 345677777632 22334556667766433211 000 023466666 4432 345566666 7
Q ss_pred HHhcCCCeEEEEE
Q 045799 147 KAVLKPDGYILVC 159 (231)
Q Consensus 147 ~~~Lk~gG~l~i~ 159 (231)
...|++|..++-.
T Consensus 81 ~~~l~~g~iiid~ 93 (163)
T PF03446_consen 81 LAGLRPGKIIIDM 93 (163)
T ss_dssp GGGS-TTEEEEE-
T ss_pred hhccccceEEEec
Confidence 7777777666543
No 369
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=31.50 E-value=68 Score=26.89 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=17.9
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.++..++|-=||+|.+++..+
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAA 210 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAA 210 (381)
T ss_pred CCCCccccCCCCccHHHHHHH
Confidence 445789999999999988877
No 370
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=31.47 E-value=1.6e+02 Score=24.20 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=49.1
Q ss_pred CCCCeEEEEcCCC-CcchHHHhcCccccccceeeeeecCCcccccC-------------------CCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGA-GNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------NVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~-G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------~~~~~~fD~ii~~~~ 130 (231)
-++.+|.=+|.|. |..+..++..- +.++..+|++..-+.. .-.-.+.|++|..-.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~gl-----gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVL 240 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGL-----GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVL 240 (371)
T ss_pred CCCccEEEECCccccchHHHHHhcc-----CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEE
Confidence 3456777788775 44555555221 2344555555322211 001247899888665
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEE
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYIL 157 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~ 157 (231)
+.-- ..++-+.+++...||||++++
T Consensus 241 Ipga--kaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 241 IPGA--KAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred ecCC--CCceehhHHHHHhcCCCcEEE
Confidence 5433 778889999999999999886
No 371
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=31.44 E-value=1.1e+02 Score=23.36 Aligned_cols=34 Identities=29% Similarity=0.358 Sum_probs=23.1
Q ss_pred CCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.+.+|+++.... . ...+..+.+.|+++|.++...
T Consensus 199 ~~~~d~vi~~~~-------~-~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 199 GGGADVVIDAVG-------G-PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCCCCEEEECCC-------C-HHHHHHHHHhcccCCEEEEEc
Confidence 356888875321 1 145777888999999988753
No 372
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=31.27 E-value=50 Score=21.47 Aligned_cols=69 Identities=22% Similarity=0.234 Sum_probs=34.0
Q ss_pred CeEEEEcCCCCcchHHHhcCc--ccccc--ceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHh
Q 045799 74 KVVLEVGCGAGNTIFPLVSHS--EFREE--RVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAV 149 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~--~~~~~--~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~ 149 (231)
.+|| +-||+|.-+..++.+. ..... .+++..+.++.-. . ....+|+|+..- +....+.++...
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~--~--~~~~~Dvill~p--------qi~~~~~~i~~~ 70 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAG--E--KLDDADVVLLAP--------QVAYMLPDLKKE 70 (95)
T ss_pred cEEE-EECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHH--h--hcCCCCEEEECc--------hHHHHHHHHHHH
Confidence 4555 7899996666555211 00111 2233344433211 1 124689888743 344456666666
Q ss_pred cCCCeE
Q 045799 150 LKPDGY 155 (231)
Q Consensus 150 Lk~gG~ 155 (231)
+.+-|.
T Consensus 71 ~~~~~i 76 (95)
T TIGR00853 71 TDKKGI 76 (95)
T ss_pred hhhcCC
Confidence 655443
No 373
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=31.07 E-value=71 Score=29.48 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCCeEEEEE
Q 045799 139 MPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 139 ~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+.++++.++++|+++|.++..
T Consensus 567 ~~~a~~~~rEll~ddg~lv~y 587 (875)
T COG1743 567 FREAFQAVRELLKDDGRLVTY 587 (875)
T ss_pred HHHHHHHHHHhcCCCCeEEEE
Confidence 357889999999999999875
No 374
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=30.55 E-value=89 Score=25.30 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=27.9
Q ss_pred ecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 106 CNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 106 ~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+-++...+..+.+....|+|++.+- ........+...|++||.+++..
T Consensus 52 vRis~~pi~~~~~~~~~D~lv~~~~-------~~~~~~~~~~~~l~~gg~vi~n~ 99 (312)
T PRK14028 52 LTISKNPIEDQEPVKTPDVAVIFDD-------KLIDPMRFAIDAVKPGGYVILNT 99 (312)
T ss_pred EEecCcccccccccCCCCEEEEeCh-------hhhccccHHhcCcCCCeEEEEeC
Confidence 3344444433344578999999661 11111112366889999998764
No 375
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=30.49 E-value=2.7e+02 Score=22.37 Aligned_cols=43 Identities=19% Similarity=0.420 Sum_probs=21.0
Q ss_pred hhHHHHHHhccCCcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHH
Q 045799 34 KYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPL 90 (231)
Q Consensus 34 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l 90 (231)
.||-.+|. .++..+.+...+... +..--=|=|+||.-.....+
T Consensus 44 ~~wl~~yp---------~~~~~~l~~~~~~r~-----p~~~Pdl~I~aGrrta~l~~ 86 (329)
T COG3660 44 NFWLAYYP---------IHILRELFGPRLSRK-----PEQRPDLIITAGRRTAPLAF 86 (329)
T ss_pred hhhhhcCc---------cHhHHHhhcCccccC-----ccCCCceEEecccchhHHHH
Confidence 57777662 224455555444332 21112366777765444333
No 376
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=30.42 E-value=80 Score=25.79 Aligned_cols=82 Identities=22% Similarity=0.206 Sum_probs=44.7
Q ss_pred CCCCeEEEEcC--CCCcchHHHhcCccccc----------cceeee----eecCCcccccC----CCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGC--GAGNTIFPLVSHSEFRE----------ERVNAF----VCNVVNDDLSR----NVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGc--G~G~~~~~l~~~~~~~~----------~~~~~~----~~D~~~~~~~~----~~~~~~fD~ii~~~~ 130 (231)
.++.+||=.|. |-|.++.+|+....+.. ..+.-. .++....++.. ......+|+|+..-.
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG 220 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVG 220 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCC
Confidence 56899999985 55667777774332110 000000 12222111111 112346999988442
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
...+.+....|+++|.++..-.
T Consensus 221 ---------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 221 ---------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred ---------HHHHHHHHHHhccCCEEEEEec
Confidence 3356667889999999987643
No 377
>PRK08655 prephenate dehydrogenase; Provisional
Probab=30.30 E-value=64 Score=27.65 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=21.4
Q ss_pred CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEE
Q 045799 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYIL 157 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~ 157 (231)
..|+|+.. +|.+....++.++...++++..++
T Consensus 58 ~aDvVIla-----vp~~~~~~vl~~l~~~l~~~~iVi 89 (437)
T PRK08655 58 DADIVIIS-----VPINVTEDVIKEVAPHVKEGSLLM 89 (437)
T ss_pred cCCEEEEe-----cCHHHHHHHHHHHHhhCCCCCEEE
Confidence 45777763 343445677888888888876543
No 378
>PRK11524 putative methyltransferase; Provisional
Probab=30.16 E-value=53 Score=26.19 Aligned_cols=37 Identities=11% Similarity=-0.024 Sum_probs=28.4
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccc
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDD 112 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~ 112 (231)
..++..|||-=||+|..+....... =+++++|+.++-
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lg------R~~IG~Ei~~~Y 242 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASG------RKFIGIEINSEY 242 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcC------CCEEEEeCCHHH
Confidence 5789999999999998887665442 367888887543
No 379
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=29.99 E-value=28 Score=28.54 Aligned_cols=88 Identities=9% Similarity=0.104 Sum_probs=47.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccCCCCCCC---------eeEEEEe---eeeeccCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSRNVNPSS---------VDVVTLI---FMLSAVSPKK 138 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~---------fD~ii~~---~~l~~~~~~~ 138 (231)
...-.++-.|.|||....-.-......+..++++++|.....+..+...++ ||++=.. -.+.++-...
T Consensus 210 ~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~vd~~~~~~ 289 (362)
T KOG1252|consen 210 DGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKLVDEVLKVS 289 (362)
T ss_pred cCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccchHHHHHHHHhC
Confidence 344678888999998654443211222447788899987666554433333 2211100 0111111122
Q ss_pred HHHHHHHHHHhcCCCeEEEE
Q 045799 139 MPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 139 ~~~~l~~~~~~Lk~gG~l~i 158 (231)
.+..+...++++...|++.=
T Consensus 290 ~d~A~~~Ar~La~eeGll~G 309 (362)
T KOG1252|consen 290 SDEAIEMARRLALEEGLLVG 309 (362)
T ss_pred CHHHHHHHHHHHHhhCeeec
Confidence 34566677777788888754
No 380
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=29.62 E-value=89 Score=28.76 Aligned_cols=87 Identities=14% Similarity=0.045 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHhcCCCeEEEEEeccCCchhh-hhhhccccccccceEEeCCCe---------EEEeeCHHHHHHHHHHc
Q 045799 137 KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQ-VKLLDRNQMIGDSFYVRGDGT---------CSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 137 ~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~l~~~ 206 (231)
+-.+.+++++-+.++|+.++...+.+.+-... .........+.-+|+....-+ ...--+.+....+++..
T Consensus 405 ~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~l 484 (714)
T TIGR02437 405 KVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASKM 484 (714)
T ss_pred HHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHHHHc
Confidence 44568999999999999777654433321110 001111112222322111100 00012345567778888
Q ss_pred CceEEEEEEEeeeeecc
Q 045799 207 GFSTVDINIHLKQIKNR 223 (231)
Q Consensus 207 Gf~~~~~~~~~~~~~~~ 223 (231)
|-+.+.+...+-.+.||
T Consensus 485 gk~pv~v~d~pGfi~NR 501 (714)
T TIGR02437 485 GKTPIVVNDCPGFFVNR 501 (714)
T ss_pred CCEEEEeCCcccchHHH
Confidence 99988888777777766
No 381
>PRK03094 hypothetical protein; Provisional
Probab=29.58 E-value=60 Score=20.49 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHcCceEEEEEE
Q 045799 195 SEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 195 ~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
....+.+.|++.||+++.+..
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred CcHHHHHHHHHCCCEEEecCc
Confidence 456799999999999998753
No 382
>PHA03297 envelope glycoprotein L; Provisional
Probab=29.53 E-value=57 Score=23.18 Aligned_cols=19 Identities=42% Similarity=0.908 Sum_probs=15.2
Q ss_pred CCCCCCeEEEEcCCCCcch
Q 045799 69 PNGNPKVVLEVGCGAGNTI 87 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~ 87 (231)
.....++|||..||+|..-
T Consensus 36 ~~gepkrileascgsgpim 54 (185)
T PHA03297 36 GPGEPKRILEASCGSGPIM 54 (185)
T ss_pred CCCCchhhhhhccCCCccc
Confidence 4566789999999999643
No 383
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=29.40 E-value=77 Score=29.13 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=49.4
Q ss_pred eeeccC--CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhh-hhhhccccccccceEEeCC---------CeEEEeeCHH
Q 045799 130 MLSAVS--PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQ-VKLLDRNQMIGDSFYVRGD---------GTCSFYFSED 197 (231)
Q Consensus 130 ~l~~~~--~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 197 (231)
+++.++ .+-.+.+++++.+.++|+.++...+.+.+-... .........+.-+|+.... +....--+.+
T Consensus 396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~ 475 (715)
T PRK11730 396 VVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIA 475 (715)
T ss_pred EEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHH
Confidence 344443 134468999999999999777554433331110 0011111122222221110 0000112335
Q ss_pred HHHHHHHHcCceEEEEEEEeeeeecc
Q 045799 198 FLSTLFLEAGFSTVDINIHLKQIKNR 223 (231)
Q Consensus 198 ~l~~~l~~~Gf~~~~~~~~~~~~~~~ 223 (231)
.+.++++..|...+.+...+-.+.||
T Consensus 476 ~~~~~~~~lgk~pv~v~d~pGfv~nR 501 (715)
T PRK11730 476 TVVAYASKMGKTPIVVNDCPGFFVNR 501 (715)
T ss_pred HHHHHHHHhCCceEEecCcCchhHHH
Confidence 56778888999999888777777766
No 384
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=29.21 E-value=1e+02 Score=18.60 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=20.0
Q ss_pred eCHHHHHHHHHHcCceEEEEEEEee
Q 045799 194 FSEDFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 194 ~~~~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
.+..++++.|+..||..+...-...
T Consensus 7 ~~~ke~ik~Le~~Gf~~vrqkGSH~ 31 (66)
T COG1724 7 MKAKEVIKALEKDGFQLVRQKGSHR 31 (66)
T ss_pred CCHHHHHHHHHhCCcEEEEeeccee
Confidence 5678999999999999988754433
No 385
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=28.94 E-value=10 Score=20.86 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=24.1
Q ss_pred eCHHHHHHHHHHcCceEEEEEEEeeeeeccc
Q 045799 194 FSEDFLSTLFLEAGFSTVDINIHLKQIKNRS 224 (231)
Q Consensus 194 ~~~~~l~~~l~~~Gf~~~~~~~~~~~~~~~~ 224 (231)
++..++.+.|.+.|+...-+....+.++.++
T Consensus 6 LSd~eL~~~L~~~G~~~gPIt~sTR~vy~kk 36 (44)
T smart00540 6 LSDAELRAELKQYGLPPGPITDTTRKLYEKK 36 (44)
T ss_pred cCHHHHHHHHHHcCCCCCCcCcchHHHHHHH
Confidence 5778999999999998877777666666554
No 386
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=28.45 E-value=84 Score=22.73 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=35.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-------------CCCCCCCeeEEEEeeeeeccCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------RNVNPSSVDVVTLIFMLSAVSPK 137 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------~~~~~~~fD~ii~~~~l~~~~~~ 137 (231)
..+++|.=.|+|....+.--. .......+. ..+|..+.-.. ..+.....|+|+... .+|
T Consensus 66 ~~gk~I~~yGA~~kg~tlln~--~g~~~~~I~-~vvD~np~K~G~~~PGt~ipI~~p~~l~~~~pd~vivla-w~y---- 137 (160)
T PF08484_consen 66 AEGKRIAGYGAGAKGNTLLNY--FGLDNDLID-YVVDDNPLKQGKYLPGTHIPIVSPEELKERKPDYVIVLA-WNY---- 137 (160)
T ss_dssp HTT--EEEE---SHHHHHHHH--HT--TTTS---EEES-GGGTTEE-TTT--EEEEGGG--SS--SEEEES--GGG----
T ss_pred HcCCEEEEECcchHHHHHHHH--hCCCcceeE-EEEeCChhhcCcccCCCCCeECCHHHHhhCCCCEEEEcC-hhh----
Confidence 567889999998876653222 111111111 22333211110 022345678877633 233
Q ss_pred CHHHHHHHHHHhcCCCeEEEEE
Q 045799 138 KMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 138 ~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.+.+++++.+.+..||.+++.
T Consensus 138 -~~EI~~~~~~~~~~gg~fi~p 158 (160)
T PF08484_consen 138 -KDEIIEKLREYLERGGKFIVP 158 (160)
T ss_dssp -HHHHHHHTHHHHHTT-EEEE-
T ss_pred -HHHHHHHHHHHHhcCCEEEEe
Confidence 466888888899999999874
No 387
>PRK08441 oorC 2-oxoglutarate-acceptor oxidoreductase subunit OorC; Reviewed
Probab=28.41 E-value=2.3e+02 Score=20.88 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=21.6
Q ss_pred CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+.++.|++++. ++.. +.+...-|++||++++.
T Consensus 65 ~~~~~D~lval---------~~~~-~~~~~~~l~~gg~ii~n 96 (183)
T PRK08441 65 NEGEIDFMLST---------AQIS-YNQFKSGVKEGGIIVVE 96 (183)
T ss_pred CCCCCCEEEEC---------CHHH-HHHHHhhcCCCeEEEEc
Confidence 33678999962 2333 34556678999999875
No 388
>PRK14029 pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma; Provisional
Probab=27.37 E-value=2e+02 Score=21.19 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=27.3
Q ss_pred eecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHH--HHHHhcCCCeEEEEEe
Q 045799 105 VCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQ--NIKAVLKPDGYILVCD 160 (231)
Q Consensus 105 ~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~--~~~~~Lk~gG~l~i~~ 160 (231)
.+-++...+..+.+....|++++.+. . .+. +....|++||.+++..
T Consensus 50 ~vRis~~~i~~~~~~~~~Dilva~~~---------~-~~~~~~~~~~l~~~g~vi~n~ 97 (185)
T PRK14029 50 FTRIDEKPIRIKTQIYEPDVVVVLDP---------S-LLDTVDVTAGLKDGGIVIVNT 97 (185)
T ss_pred EEEEcCCcccCccccCCCCEEEEcCH---------H-HhhhchHhhCcCCCcEEEEEC
Confidence 33444444432334678899998552 1 122 2466789999998763
No 389
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=26.98 E-value=1.9e+02 Score=23.14 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=21.3
Q ss_pred CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 120 SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+.+|+|+.. + . ...+....++|+++|.++..
T Consensus 206 ~gvdvv~d~-----~--G--~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 206 DGYDCYFDN-----V--G--GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CCeEEEEEC-----C--C--HHHHHHHHHHhCcCcEEEEe
Confidence 457777652 2 1 12457788999999999865
No 390
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=26.94 E-value=63 Score=26.50 Aligned_cols=19 Identities=37% Similarity=0.391 Sum_probs=16.3
Q ss_pred CCeEEEEcCCCCcchHHHh
Q 045799 73 PKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~ 91 (231)
.-.+||+|........+|.
T Consensus 139 ~~~~LDvGANvd~~~~~L~ 157 (338)
T COG0416 139 KTVVLDVGANVDCKPEHLV 157 (338)
T ss_pred ceEEEeCCCCCCCCHHHHH
Confidence 3679999999999888887
No 391
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=26.29 E-value=1.3e+02 Score=27.03 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=32.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcC---ccccccc--eeeeeecCCcccccCCCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSH---SEFREER--VNAFVCNVVNDDLSRNVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~---~~~~~~~--~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~ 130 (231)
.+..+|| +.||+|.-+..+++. ....+.+ +++..+|++.. +-..+.+|+|+++.-
T Consensus 504 ~k~mKIL-vaCGsGiGTStmva~kIkk~Lke~GI~veV~~~~Vsev----~s~~~~aDIIVtt~~ 563 (602)
T PRK09548 504 GKPVRIL-AVCGQGQGSSMMMKMKIKKYLDKRGIPIIMDSCAVNDY----KGKLETIDIIVCSKH 563 (602)
T ss_pred CcccEEE-EECCCCchHHHHHHHHHHHHHHHcCCCeEEEEechHhC----cccCCCCCEEEEccc
Confidence 4556777 889999888777621 1111112 34556666532 222356899998663
No 392
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=25.94 E-value=3.9e+02 Score=22.40 Aligned_cols=22 Identities=18% Similarity=0.150 Sum_probs=17.9
Q ss_pred eeCHHHHHHHHHHcCceEEEEE
Q 045799 193 YFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 193 ~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
.-..+.|...+..+||+.+.+.
T Consensus 309 ~e~~~~W~~r~~~aGF~~~~ls 330 (374)
T PF03514_consen 309 HERLEQWRRRMRRAGFRPVPLS 330 (374)
T ss_pred ccchhHHHHHHHhcCCeecCCC
Confidence 4567889999999999987764
No 393
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=25.71 E-value=1.7e+02 Score=21.40 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=21.3
Q ss_pred CCCeeEEEEeeeeeccCCCCHHHHHH-HHHHhcCCCeEEEEEe
Q 045799 119 PSSVDVVTLIFMLSAVSPKKMPLILQ-NIKAVLKPDGYILVCD 160 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~~~~~~~~l~-~~~~~Lk~gG~l~i~~ 160 (231)
....|++++.+. ..+-. +....|+|||.+++..
T Consensus 64 ~~~~D~lva~~~---------~~~~~~~~~~~l~~gg~vi~ns 97 (181)
T PRK08534 64 IYEPDYVIVQDP---------TLLDSVDVTSGLKKDGIIIINT 97 (181)
T ss_pred CCCCCEEEEcCH---------HHhcchhHhcCcCCCcEEEEEC
Confidence 457799888552 11111 3466799999998763
No 394
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=25.09 E-value=1.2e+02 Score=22.35 Aligned_cols=25 Identities=8% Similarity=0.224 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 139 MPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 139 ~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
.+.+++++.+.+.|+-.+...+.+.
T Consensus 93 K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 93 KQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp HHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred HHHHHHHHHHHhCCCceEEecCCCC
Confidence 3689999999999988876654433
No 395
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=24.91 E-value=3.4e+02 Score=21.27 Aligned_cols=36 Identities=22% Similarity=0.143 Sum_probs=21.4
Q ss_pred CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCe-EEEE
Q 045799 120 SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDG-YILV 158 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG-~l~i 158 (231)
++||+++.-=. .- .+-...++.+..+.||..| ..++
T Consensus 111 ~~fD~f~TDPP-yT--~~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 111 GKFDVFFTDPP-YT--PEGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp S-BSEEEE----SS--HHHHHHHHHHHHHTB-STT-EEEE
T ss_pred cCCCEEEeCCC-CC--HHHHHHHHHHHHHHhCCCCceEEE
Confidence 79999887211 11 1345678999999998766 4444
No 396
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=24.81 E-value=46 Score=26.98 Aligned_cols=79 Identities=11% Similarity=0.080 Sum_probs=40.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccCCCC-------CCCeeEEEEeeeeeccC--CCCHHH
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSRNVN-------PSSVDVVTLIFMLSAVS--PKKMPL 141 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~~~~-------~~~fD~ii~~~~l~~~~--~~~~~~ 141 (231)
..+++|.=||.|. .+..++... ..-++++++.|.+.......+. -..-|+|+. |+| ++...-
T Consensus 143 L~gktvGIiG~G~--IG~~vA~~~--~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~l-----h~Plt~~T~~l 213 (311)
T PRK08410 143 IKGKKWGIIGLGT--IGKRVAKIA--QAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISI-----HAPLNEKTKNL 213 (311)
T ss_pred cCCCEEEEECCCH--HHHHHHHHH--hhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEE-----eCCCCchhhcc
Confidence 4678899898864 333333111 1225667777764321111110 023466665 444 222233
Q ss_pred HHHHHHHhcCCCeEEEE
Q 045799 142 ILQNIKAVLKPDGYILV 158 (231)
Q Consensus 142 ~l~~~~~~Lk~gG~l~i 158 (231)
+=++....||||.+|+=
T Consensus 214 i~~~~~~~Mk~~a~lIN 230 (311)
T PRK08410 214 IAYKELKLLKDGAILIN 230 (311)
T ss_pred cCHHHHHhCCCCeEEEE
Confidence 34566678888877753
No 397
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=24.78 E-value=1.1e+02 Score=21.56 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=26.3
Q ss_pred CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 120 SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
..|++||...... + .....+.+.+..+.||.+++.
T Consensus 52 ~~y~~vi~P~~~~-~----~~~~~~~l~~~v~~GG~li~~ 86 (154)
T cd03143 52 SGYKLVVLPDLYL-L----SDATAAALRAYVENGGTLVAG 86 (154)
T ss_pred ccCCEEEECchhc-C----CHHHHHHHHHHHHCCCEEEEe
Confidence 3799999988654 3 235677788888899988775
No 398
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.71 E-value=77 Score=25.09 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHcCceEEEEEEEeeeeecc
Q 045799 195 SEDFLSTLFLEAGFSTVDINIHLKQIKNR 223 (231)
Q Consensus 195 ~~~~l~~~l~~~Gf~~~~~~~~~~~~~~~ 223 (231)
+.+.+..+++..|..++.+...+-.+.+|
T Consensus 163 ~~~~~~~l~~~lGk~pv~~~d~~g~i~~R 191 (282)
T PRK05808 163 THEAVEALAKKIGKTPVEVKNAPGFVVNR 191 (282)
T ss_pred HHHHHHHHHHHcCCeeEEecCccChHHHH
Confidence 33557788888999988876555555443
No 399
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=24.43 E-value=38 Score=22.53 Aligned_cols=70 Identities=10% Similarity=0.189 Sum_probs=34.9
Q ss_pred eEEEEcCCCCcchHHHhcCcc--cccc--ceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhc
Q 045799 75 VVLEVGCGAGNTIFPLVSHSE--FREE--RVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVL 150 (231)
Q Consensus 75 ~iLdvGcG~G~~~~~l~~~~~--~~~~--~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~L 150 (231)
+|| +-||+|.-+..++..-. .... .+.+..+.++. .........||+|++. ++..-.+.++...+
T Consensus 3 kIL-lvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e--~~~~~~~~~~DvIll~--------PQi~~~~~~i~~~~ 71 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATE--GEKAIAAAEYDLYLVS--------PQTKMYFKQFEEAG 71 (104)
T ss_pred EEE-EECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHH--HHHhhccCCCCEEEEC--------hHHHHHHHHHHHHh
Confidence 344 77999986665542110 0111 22333344332 1111123468988874 23444566777777
Q ss_pred CCCeE
Q 045799 151 KPDGY 155 (231)
Q Consensus 151 k~gG~ 155 (231)
.+.|.
T Consensus 72 ~~~~i 76 (104)
T PRK09590 72 AKVGK 76 (104)
T ss_pred hhcCC
Confidence 65544
No 400
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=24.05 E-value=91 Score=19.66 Aligned_cols=10 Identities=30% Similarity=0.232 Sum_probs=7.8
Q ss_pred CCeeEEEEee
Q 045799 120 SSVDVVTLIF 129 (231)
Q Consensus 120 ~~fD~ii~~~ 129 (231)
+.+|+|++.-
T Consensus 44 ~~~Dliitt~ 53 (87)
T cd05567 44 SDADLVVTHA 53 (87)
T ss_pred CCCCEEEECh
Confidence 5789999865
No 401
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=24.03 E-value=1.8e+02 Score=26.78 Aligned_cols=87 Identities=9% Similarity=-0.013 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHhcCCCeEEEEEeccCCchhh-hhhhccccccccceEEeCC---------CeEEEeeCHHHHHHHHHHc
Q 045799 137 KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQ-VKLLDRNQMIGDSFYVRGD---------GTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 137 ~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~l~~~ 206 (231)
+-.+.+++++...++|+.++.-.+.+.+-... .........+.-+|+.... +....--+.+.+..+++..
T Consensus 402 ~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~ 481 (708)
T PRK11154 402 ALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQ 481 (708)
T ss_pred HHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHHHc
Confidence 34468999999999999877654433321110 0011111122222221110 0000112345567778888
Q ss_pred CceEEEEEEEeeeeecc
Q 045799 207 GFSTVDINIHLKQIKNR 223 (231)
Q Consensus 207 Gf~~~~~~~~~~~~~~~ 223 (231)
|...+.+...+-.+.||
T Consensus 482 gk~pv~v~d~pGfi~nR 498 (708)
T PRK11154 482 GKTPIVVRDGAGFYVNR 498 (708)
T ss_pred CCceEEEeccCcHHHHH
Confidence 99888877666556555
No 402
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=23.55 E-value=2.6e+02 Score=19.43 Aligned_cols=70 Identities=20% Similarity=0.090 Sum_probs=49.6
Q ss_pred CCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHH
Q 045799 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDF 198 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (231)
++-.|+|++.+-- .+.++...|-.+.+.|..+|.+.+..+..... .+.++.+
T Consensus 43 ddvvD~vllWwR~---~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~-------------------------g~V~~~~ 94 (127)
T PF11253_consen 43 DDVVDVVLLWWRD---DDGDLVDALVDARTNLADDGVIWVLTPKAGRP-------------------------GHVEPSD 94 (127)
T ss_pred cccccEEEEEEEC---CcchHHHHHHHHHhhhcCCCEEEEEccCCCCC-------------------------CCCCHHH
Confidence 4567887775532 23577888888899999999999875333211 1357789
Q ss_pred HHHHHHHcCceEEEEEEE
Q 045799 199 LSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 199 l~~~l~~~Gf~~~~~~~~ 216 (231)
+.+....+|+.....-.+
T Consensus 95 I~eaA~taGL~~t~~~~v 112 (127)
T PF11253_consen 95 IREAAPTAGLVQTKSCAV 112 (127)
T ss_pred HHHHHhhcCCeeeeeecc
Confidence 999999999987765443
No 403
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=23.04 E-value=2.7e+02 Score=19.36 Aligned_cols=43 Identities=23% Similarity=0.098 Sum_probs=31.0
Q ss_pred CCCeeEEEEeeeeeccC-CCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 119 PSSVDVVTLIFMLSAVS-PKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
-..||.||....++.-. +.....++++....|+.--+.++...
T Consensus 41 ~~~yD~vi~gspiy~g~~~~~~~~fi~~~~~~l~~k~v~~f~~~ 84 (143)
T PF12724_consen 41 LSDYDAVIFGSPIYAGRIPGEMREFIKKNKDNLKNKKVALFSVG 84 (143)
T ss_pred cccCCEEEEEEEEECCcCCHHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 46899999998887653 34567888888888876655555543
No 404
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=22.86 E-value=1.2e+02 Score=18.27 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=15.2
Q ss_pred eCHHHHHHHHHHcCceEEEE
Q 045799 194 FSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 194 ~~~~~l~~~l~~~Gf~~~~~ 213 (231)
++.+++.++|+..||++...
T Consensus 19 i~~~~i~~~L~~lg~~~~~~ 38 (70)
T PF03484_consen 19 ISPEEIIKILKRLGFKVEKI 38 (70)
T ss_dssp --HHHHHHHHHHTT-EEEE-
T ss_pred CCHHHHHHHHHHCCCEEEEC
Confidence 68899999999999999885
No 405
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=22.77 E-value=1.6e+02 Score=21.96 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=22.3
Q ss_pred CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 120 SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++.|++++.+. . .+......|+|||++++..
T Consensus 67 ~~~D~lva~d~---------~-~~~~~~~~lk~gg~ii~n~ 97 (197)
T PRK06853 67 GKADLLLAFEP---------L-EALRYLPYLKKGGKVVVNT 97 (197)
T ss_pred CCCCEEEEeCH---------H-HHHHHHHhcCCCcEEEEEC
Confidence 48899999552 2 2345667789999998764
No 406
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=22.75 E-value=2e+02 Score=20.97 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=21.3
Q ss_pred CCCCeeEEEEeeeeeccCCCCHHHHHH--HHHHhcCCCeEEEEEe
Q 045799 118 NPSSVDVVTLIFMLSAVSPKKMPLILQ--NIKAVLKPDGYILVCD 160 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~~~~~l~--~~~~~Lk~gG~l~i~~ 160 (231)
+....|++++.+. ..+. +..+.|+|||.+++..
T Consensus 63 ~~~~~D~lva~~~----------~~~~~~~~~~~l~~gg~ii~d~ 97 (177)
T TIGR02175 63 QIYEPDYVVVLDP----------TLLKTVNVTAGLKEDGILIVNT 97 (177)
T ss_pred ccCCCCEEEEcCH----------HHhCccchhhCcCCCeEEEEEC
Confidence 3467899888552 1121 1456789999998753
No 407
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=22.70 E-value=52 Score=24.41 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEEe
Q 045799 139 MPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 139 ~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
...++..+...|+++-.+++..
T Consensus 99 v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 99 VESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp HHHHHHHHHHHHCSCEEEEESS
T ss_pred HHHHHHHHHHHHhhcceEEEcc
Confidence 4678889999999977766653
No 408
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=22.22 E-value=1.3e+02 Score=25.64 Aligned_cols=78 Identities=12% Similarity=-0.019 Sum_probs=40.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----CC-------CCCCeeEEEEeeeeeccCCCCH
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----NV-------NPSSVDVVTLIFMLSAVSPKKM 139 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----~~-------~~~~fD~ii~~~~l~~~~~~~~ 139 (231)
.++.+|+=+|+|.=.......... .+.+++.+|..+.-... .+ .-...|+|+... ..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~----~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~at-------G~- 267 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRG----QGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTT-------GN- 267 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH----CCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECC-------CC-
Confidence 468899999998633222222111 13344555554321100 00 012467776532 22
Q ss_pred HHHHHH-HHHhcCCCeEEEEEe
Q 045799 140 PLILQN-IKAVLKPDGYILVCD 160 (231)
Q Consensus 140 ~~~l~~-~~~~Lk~gG~l~i~~ 160 (231)
..++.. ..+.+|+||+++..-
T Consensus 268 ~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 268 KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred HHHHHHHHHhcCCCCcEEEEeC
Confidence 334544 488999999997653
No 409
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=22.22 E-value=1.3e+02 Score=23.64 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=16.7
Q ss_pred CCCeEEEEcCCCCcchHHHh
Q 045799 72 NPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~ 91 (231)
....|+|+|-|+|.+...+.
T Consensus 58 ~~~~i~E~gfgtglnfl~~~ 77 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAH 77 (252)
T ss_pred cceeehhhhcccchhHHHHH
Confidence 56789999999999877665
No 410
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=22.05 E-value=33 Score=23.07 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=22.5
Q ss_pred CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
..+.||+|+.... . ....++..+.++| |+|.++..
T Consensus 16 ~~~~~D~ViD~~g-~-----~~~~~~~~~~~~l-~~G~~v~i 50 (127)
T PF13602_consen 16 GPGGVDVVIDTVG-Q-----TGESLLDASRKLL-PGGRVVSI 50 (127)
T ss_dssp TTS-EEEEEESS--C-----CHHHCGGGCCCTE-EEEEEEEE
T ss_pred CCCCceEEEECCC-C-----ccHHHHHHHHHHC-CCCEEEEE
Confidence 4678999998654 1 1233446677888 99997554
No 411
>PRK13699 putative methylase; Provisional
Probab=22.05 E-value=90 Score=24.00 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=26.7
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCc
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVN 110 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~ 110 (231)
..++..|||-=||+|..+...... +-+++++++.+
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~------~r~~~g~e~~~ 195 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS------GRRYIGIELLE 195 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc------CCCEEEEecCH
Confidence 467899999999999888766543 33667888864
No 412
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=21.93 E-value=3.8e+02 Score=20.73 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=13.9
Q ss_pred eCHHHHHHHHHHcCceEE
Q 045799 194 FSEDFLSTLFLEAGFSTV 211 (231)
Q Consensus 194 ~~~~~l~~~l~~~Gf~~~ 211 (231)
-+.+.|++.|+++||++.
T Consensus 216 ddedswk~il~~~G~~v~ 233 (265)
T COG4822 216 DDEDSWKNILEKNGFKVE 233 (265)
T ss_pred cchHHHHHHHHhCCceeE
Confidence 356778888888888873
No 413
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=21.90 E-value=99 Score=22.86 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=19.9
Q ss_pred CCeeEEEEeeeee-cc-CCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 120 SSVDVVTLIFMLS-AV-SPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 120 ~~fD~ii~~~~l~-~~-~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.+||+||..++=. .+ .-......++.+.+..+.||-+++.
T Consensus 66 ~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgLlmi 107 (177)
T PF07090_consen 66 NRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGLLMI 107 (177)
T ss_dssp CT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EEEEE
T ss_pred hcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEEEEE
Confidence 6899999977522 11 0001234456666666667666554
No 414
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=21.76 E-value=1.2e+02 Score=21.07 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=30.0
Q ss_pred CCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCC
Q 045799 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~ 164 (231)
.+.||+|+..- ...+...+++.+...+.++..+++...+..
T Consensus 65 ~~~~D~viv~v-----Ka~~~~~~l~~l~~~~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 65 AGPYDLVIVAV-----KAYQLEQALQSLKPYLDPNTTIVSLQNGMG 105 (151)
T ss_dssp HSTESEEEE-S-----SGGGHHHHHHHHCTGEETTEEEEEESSSSS
T ss_pred cCCCcEEEEEe-----cccchHHHHHHHhhccCCCcEEEEEeCCCC
Confidence 47899998843 224567899999999999988877644443
No 415
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=21.40 E-value=2e+02 Score=26.36 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=25.9
Q ss_pred CCCeeEEEEeeeeeccC-CCCHH-HHHHHHHHhcCCCeEEEEEeccC
Q 045799 119 PSSVDVVTLIFMLSAVS-PKKMP-LILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~-~~~~~-~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+-++|+|++-.=..... -.... .+...+..+|.++|.+++-++..
T Consensus 413 ~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt 459 (675)
T PF14314_consen 413 NLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLT 459 (675)
T ss_pred CCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHh
Confidence 35799999865322110 01122 23344557779999999875443
No 416
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=21.36 E-value=3e+02 Score=19.70 Aligned_cols=27 Identities=11% Similarity=0.305 Sum_probs=19.7
Q ss_pred EeeCHHHHHHHHHHcCceEEEEEEEee
Q 045799 192 FYFSEDFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 192 ~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
++..-++.++.+.+.|..-..+.+.+.
T Consensus 141 y~Vase~~~~~l~~~Gi~~~~I~vtGi 167 (169)
T PF06925_consen 141 YFVASEEVKEELIERGIPPERIHVTGI 167 (169)
T ss_pred EEECCHHHHHHHHHcCCChhHEEEeCc
Confidence 345667888888889988777776654
No 417
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=21.16 E-value=1.2e+02 Score=21.45 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=18.4
Q ss_pred HHHHHHHHHcCceEEEEEEEee
Q 045799 197 DFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 197 ~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
.+|.+.|+.+||++..+.....
T Consensus 40 ~~w~~~mk~~Gf~Vk~~~~~d~ 61 (149)
T COG3019 40 DEWAQHMKANGFEVKVVETDDF 61 (149)
T ss_pred HHHHHHHHhCCcEEEEeecCcH
Confidence 6899999999999988776543
No 418
>PRK10537 voltage-gated potassium channel; Provisional
Probab=21.09 E-value=4.3e+02 Score=22.39 Aligned_cols=20 Identities=5% Similarity=-0.079 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCCeEEEEEe
Q 045799 141 LILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 141 ~~l~~~~~~Lk~gG~l~i~~ 160 (231)
..+....+.+.|+..+++..
T Consensus 317 l~ivL~ar~l~p~~kIIa~v 336 (393)
T PRK10537 317 AFVVLAAKEMSSDVKTVAAV 336 (393)
T ss_pred HHHHHHHHHhCCCCcEEEEE
Confidence 33444566677777776653
No 419
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=20.88 E-value=2e+02 Score=22.21 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHcCceEEEE
Q 045799 195 SEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 195 ~~~~l~~~l~~~Gf~~~~~ 213 (231)
-..-+.++|++.||+|..+
T Consensus 241 G~~gvl~lLr~~Gy~V~~v 259 (259)
T PF01963_consen 241 GEDGVLDLLRKKGYTVEPV 259 (259)
T ss_pred chhhHHHHHHhCCceeecC
Confidence 3456899999999998753
No 420
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=20.87 E-value=2.3e+02 Score=22.56 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=21.7
Q ss_pred CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 120 SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+.+|+|+.. + . ...+....++|+++|.++..
T Consensus 210 ~gvd~vld~-----~--g--~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 210 DGIDCYFDN-----V--G--GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCcEEEEEC-----C--C--HHHHHHHHHhhccCCEEEEE
Confidence 457877753 2 1 13567888999999998764
No 421
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=20.75 E-value=1.1e+02 Score=17.33 Aligned_cols=24 Identities=8% Similarity=0.032 Sum_probs=18.4
Q ss_pred HHHHHHHHcCceEEEEEEEeeeee
Q 045799 198 FLSTLFLEAGFSTVDINIHLKQIK 221 (231)
Q Consensus 198 ~l~~~l~~~Gf~~~~~~~~~~~~~ 221 (231)
.=.++|+..||.++.+...-|.-.
T Consensus 22 lk~r~L~~~G~~Vi~Ip~~eW~~l 45 (58)
T PF08373_consen 22 LKHRHLKALGYKVISIPYYEWNKL 45 (58)
T ss_pred HHHHHHHHCCCEEEEecHHHHHhc
Confidence 345888999999999877666554
No 422
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=20.61 E-value=92 Score=26.67 Aligned_cols=46 Identities=30% Similarity=0.366 Sum_probs=34.2
Q ss_pred CCCCeeEEEEee-eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCC
Q 045799 118 NPSSVDVVTLIF-MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 118 ~~~~fD~ii~~~-~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~ 164 (231)
..+.||+||.-. .=+|++ +++-.-+.++++.++|.-.+++.|-...
T Consensus 179 k~~~~DvvIvDTAGRl~id-e~Lm~El~~Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHID-EELMDELKEIKEVINPDETLLVVDAMIG 225 (451)
T ss_pred HHcCCCEEEEeCCCccccc-HHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 445789988744 344442 6677788999999999999999875554
No 423
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=20.23 E-value=1.4e+02 Score=17.75 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=16.8
Q ss_pred eCHHHHHHHHHHcCceEEE
Q 045799 194 FSEDFLSTLFLEAGFSTVD 212 (231)
Q Consensus 194 ~~~~~l~~~l~~~Gf~~~~ 212 (231)
++.+++.++|+..||++..
T Consensus 19 i~~~ei~~~L~~lg~~~~~ 37 (71)
T smart00874 19 LSAEEIEEILKRLGFEVEV 37 (71)
T ss_pred CCHHHHHHHHHHCCCeEEe
Confidence 6788999999999999864
No 424
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=20.18 E-value=1.5e+02 Score=18.34 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=22.8
Q ss_pred EcCCCCcchHHHhcC---ccccccce--eeeeecCCcccccCCCCCCCeeEEEEee
Q 045799 79 VGCGAGNTIFPLVSH---SEFREERV--NAFVCNVVNDDLSRNVNPSSVDVVTLIF 129 (231)
Q Consensus 79 vGcG~G~~~~~l~~~---~~~~~~~~--~~~~~D~~~~~~~~~~~~~~fD~ii~~~ 129 (231)
+-||+|.-+..++.. ..+...++ .+...++... ....||+|+++-
T Consensus 4 vvC~~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~~~~------~~~~~DlIisT~ 53 (86)
T cd05563 4 AVCGSGLGSSLMLKMNVEKVLKELGIEAEVEHTDLGSA------KASSADIIVTSK 53 (86)
T ss_pred EECCCCccHHHHHHHHHHHHHHHCCCcEEEEEeccccc------CCCCCCEEEEch
Confidence 458888877666621 12222222 1223333321 135789998865
No 425
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=20.15 E-value=1.3e+02 Score=26.22 Aligned_cols=77 Identities=10% Similarity=-0.056 Sum_probs=41.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----C-----CCC--CCCeeEEEEeeeeeccCCCCH
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----R-----NVN--PSSVDVVTLIFMLSAVSPKKM 139 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----~-----~~~--~~~fD~ii~~~~l~~~~~~~~ 139 (231)
..+++|+=+|+|. ....++.... ..+++++.+|..+.... . ++. -...|+|+.... .
T Consensus 252 LaGKtVgVIG~G~--IGr~vA~rL~--a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atG--------t 319 (476)
T PTZ00075 252 IAGKTVVVCGYGD--VGKGCAQALR--GFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATG--------N 319 (476)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHH--HCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCC--------c
Confidence 5688999999986 4444442111 12344555543321110 0 000 135788877421 1
Q ss_pred HHHH-HHHHHhcCCCeEEEEE
Q 045799 140 PLIL-QNIKAVLKPDGYILVC 159 (231)
Q Consensus 140 ~~~l-~~~~~~Lk~gG~l~i~ 159 (231)
..++ .+....||||++++-.
T Consensus 320 ~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 320 KDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred ccccCHHHHhccCCCcEEEEc
Confidence 2234 4677889999998765
No 426
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=20.06 E-value=2.8e+02 Score=18.39 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEE
Q 045799 139 MPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 139 ~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.+.+++++.+.|+||...++.
T Consensus 41 ~d~~~~ev~~~L~~GssAl~~ 61 (102)
T PF06897_consen 41 DDEFIKEVGEALKPGSSALFL 61 (102)
T ss_pred CHHHHHHHHhhcCCCceEEEE
Confidence 346899999999999877765
Done!