BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045800
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 118/284 (41%), Gaps = 67/284 (23%)
Query: 18 EISERELLAVQVNLFNSGEMAIGVCFSHGVADV--------------------------- 50
E++E LAV+++ F G AIGV SH +ADV
Sbjct: 133 EVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETEIVLPNFDL 192
Query: 51 -----PTAVSDPKPTIFTQDCV---------QKIVVRRQEDSNSKGE----------ALI 86
P + P P + + V +KI R + S++ E A I
Sbjct: 193 AARHFPPVDNTPSPELVPDENVVMKRFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYI 252
Query: 87 WGASIAVARERKRAIDNMLYSHSMYYTMNLRNKMNPPMFPRCMGNI----FRLVRAEWSL 142
W I V R + A + + ++ NLR++MNPP+ MGNI F V AEW
Sbjct: 253 WKHVIDVTRAKYGAKNKFVVVQAV----NLRSRMNPPLPHYAMGNIATLLFAAVDAEW-- 306
Query: 143 AEDDAIDVTNLVRAVIKAKRMGRDVMNNDEYLDFIKDLYEAWEDSRSFPLTSVVGLPYYE 202
+ D D+ +R ++ +N E L + LYE E TS L +Y+
Sbjct: 307 -DKDFPDLIGPLRTSLEKTEDD----HNHELLKGMTCLYE-LEPQELLSFTSWCRLGFYD 360
Query: 203 VDFGWGKPVWFSLGPILLPDIAILSSTSDGEGIEALVVMFKEDM 246
+DFGWGKP+ + A+L T G+G+EA + M +++M
Sbjct: 361 LDFGWGKPLSACTTTFPKRNAALLMDTRSGDGVEAWLPMAEDEM 404
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 23/218 (10%)
Query: 52 TAVSDPKP----TIF--TQDCVQKIVVRRQEDSN----SKGEALIWGASIAVARERKRAI 101
TA SD P +IF T++ + + + +ED N S E L + R +
Sbjct: 220 TAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEV 279
Query: 102 DNMLYSHSMYYTMNLRNKMNPPMFPRCMGNIFRLVRAEWSLAEDDAIDVTNLVRAVIK-- 159
D +Y + R ++ P + P GN+ ++A D + I
Sbjct: 280 DQ---GTKLYIATDGRARLRPSLPPGYFGNVI-FTATPIAIAGDLEFKPVWYAASKIHDA 335
Query: 160 AKRMGRDVMNND-EYLDFIKDLYEAWEDSRSFP-----LTSVVGLPYYEVDFGWGKPVWF 213
RM D + + +YL+ DL + +F +TS V LP ++ DFGWG+P++
Sbjct: 336 LARMDNDYLRSALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFM 395
Query: 214 SLGPILLPDIA-ILSSTSDGEGIEALVVMFKEDMENFE 250
G I ++ IL S ++ + + + E M+ F+
Sbjct: 396 GPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQ 433
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 23/218 (10%)
Query: 52 TAVSDPKP----TIF--TQDCVQKIVVRRQEDSN----SKGEALIWGASIAVARERKRAI 101
TA SD P +IF T++ + + + +ED N S E L + R +
Sbjct: 220 TAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEV 279
Query: 102 DNMLYSHSMYYTMNLRNKMNPPMFPRCMGNIFRLVRAEWSLAEDDAIDVTNLVRAVIK-- 159
D +Y + R ++ P + P GN+ ++A D + I
Sbjct: 280 DQ---GTKLYIATDGRARLRPSLPPGYFGNVI-FTATPIAIAGDLEFKPVWYAASKIHDA 335
Query: 160 AKRMGRDVMNND-EYLDFIKDLYEAWEDSRSFP-----LTSVVGLPYYEVDFGWGKPVWF 213
RM D + + +YL+ DL + +F +TS V LP ++ DFGWG+P++
Sbjct: 336 LARMDNDYLRSALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFM 395
Query: 214 SLGPILLPDIA-ILSSTSDGEGIEALVVMFKEDMENFE 250
G I ++ IL S ++ + + + E M+ F+
Sbjct: 396 GPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQ 433
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 23/218 (10%)
Query: 52 TAVSDPKP----TIF--TQDCVQKIVVRRQEDSN----SKGEALIWGASIAVARERKRAI 101
TA SD P +IF T++ + + + +ED N S E L + R +
Sbjct: 217 TAKSDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEV 276
Query: 102 DNMLYSHSMYYTMNLRNKMNPPMFPRCMGNIFRLVRAEWSLAEDDAIDVTNLVRAVIK-- 159
D +Y + R ++ P + P GN+ ++A D + I
Sbjct: 277 DQ---GTKLYIATDGRARLRPSLPPGYFGNVI-FTATPIAIAGDLEFKPVWYAASKIHDA 332
Query: 160 AKRMGRDVMNND-EYLDFIKDLYEAWEDSRSFP-----LTSVVGLPYYEVDFGWGKPVWF 213
RM D + + +YL+ DL + +F +TS V LP ++ DFGWG+P++
Sbjct: 333 LARMDNDYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFM 392
Query: 214 SLGPILLPDIA-ILSSTSDGEGIEALVVMFKEDMENFE 250
G I ++ IL S ++ + + + E M+ F+
Sbjct: 393 GPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQ 430
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 32/180 (17%)
Query: 84 ALIWGASIAVARERKRAIDNMLYSHSMYYTMNLRNKMNPPM----FPRCMGNIFRLVRAE 139
A IW + IA +R K + + ++ R +M PP+ F C+G + +
Sbjct: 281 AYIW-SCIAKSRNDKLQL--------FGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTN 331
Query: 140 WSLAEDDAIDVTNLVRAVIKAKRMGRDVMNN-DEYLD-FIKDLYEAWED--SRSFP--LT 193
+ ++ I AK +G ++ +Y D +KD E++ D S P +T
Sbjct: 332 LLIGKEGFITA---------AKLIGENLHKTLTDYKDGVLKDDMESFNDLVSEGMPTTMT 382
Query: 194 SVVGLP---YYEVDFGWGKPVWFSLGPILLPD-IAILSSTSDGEGIEALVVMFKEDMENF 249
V G P +Y++DFGWGKP I I+I S E +E V + ME+F
Sbjct: 383 WVSGTPKLRFYDMDFGWGKPKKLETVSIDHNGAISINSCKESNEDLEIGVCISATQMEDF 442
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 31/140 (22%)
Query: 84 ALIWGASIAVARERKRAIDNMLYSHSMYYTMNLRNKMNPPM----FPRCMGNIFRLVRAE 139
A IW + IA +R K + + ++ R + PP+ F C+G + +
Sbjct: 281 AYIW-SCIAKSRNDKLQL--------FGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTN 331
Query: 140 WSLAEDDAIDVTNLVRAVIKAKRMGRDVMNN-DEYLD-FIKDLYEAWED--SRSFPLTS- 194
+ ++ I AK +G ++ +Y D +KD E++ D S P T
Sbjct: 332 LLIGKEGFITA---------AKLIGENLHKTLTDYKDGVLKDDXESFNDLVSEGXPTTXT 382
Query: 195 -VVGLP---YYEVDFGWGKP 210
V G P +Y+ DFGWGKP
Sbjct: 383 WVSGTPKLRFYDXDFGWGKP 402
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 115 NLRNKMNPPMFPRCMGN-----IFRLVRAEWSLAEDDAIDVTNLVRAVIKAKRMGRDVMN 169
+ R + NPP+ P GN + R + + + E I V + A+ K + +++
Sbjct: 305 DCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRXKDEEWILS 364
Query: 170 NDEYLDFIKDLYEAWEDSRSFPLTSVVGLPYYEVDFGWGKP 210
+ + Y+ + RS + L Y DFGWG+P
Sbjct: 365 GSWFKE-----YDKVDAKRSLSVAGSPKLDLYAADFGWGRP 400
>pdb|3DSQ|A Chain A, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
pdb|3DSQ|B Chain B, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
Length = 288
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 69 KIVVRRQEDSNSKGEALIWGASIAVARERK-RAIDNMLYSHSMYYTMNLRNKMNPP 123
K+ +R ++ N+ GE L G S A++R+R + I++ L S + LR + P
Sbjct: 16 KVQYQRLKELNASGEQLEMGFSDALSRDRAFQGIEHQLMSQGKRHLEQLRTVKHRP 71
>pdb|2ZNI|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNI|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNJ|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|C Chain C, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
Length = 308
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 69 KIVVRRQEDSNSKGEALIWGASIAVARERK-RAIDNMLYSHSMYYTMNLRNKMNPP 123
K+ +R ++ N+ GE L G S A++R+R + I++ L S + LR + P
Sbjct: 36 KVQYQRLKELNASGEQLEMGFSDALSRDRAFQGIEHQLMSQGKRHLEQLRTVKHRP 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,187,178
Number of Sequences: 62578
Number of extensions: 276342
Number of successful extensions: 864
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 851
Number of HSP's gapped (non-prelim): 24
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)