Query 045802
Match_columns 301
No_of_seqs 170 out of 1303
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:40:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0810 SNARE protein Syntaxin 100.0 1.4E-54 2.9E-59 396.4 33.0 289 1-296 1-294 (297)
2 COG5074 t-SNARE complex subuni 100.0 1.5E-36 3.3E-41 261.5 28.4 242 31-286 21-265 (280)
3 KOG0809 SNARE protein TLG2/Syn 100.0 1.9E-34 4E-39 257.1 23.7 248 26-289 52-299 (305)
4 KOG0811 SNARE protein PEP12/VA 100.0 7.9E-29 1.7E-33 223.3 29.4 238 31-289 17-261 (269)
5 COG5325 t-SNARE complex subuni 99.9 7.2E-22 1.6E-26 175.4 26.7 256 16-289 19-276 (283)
6 cd00179 SynN Syntaxin N-termin 99.9 7.5E-21 1.6E-25 159.2 19.3 149 30-185 1-149 (151)
7 KOG0812 SNARE protein SED5/Syn 99.7 1.2E-14 2.5E-19 129.9 28.6 239 27-283 37-302 (311)
8 smart00503 SynN Syntaxin N-ter 99.6 4.9E-14 1.1E-18 112.7 16.2 116 29-151 2-117 (117)
9 PF05739 SNARE: SNARE domain; 99.5 3.2E-13 7E-18 96.4 10.0 63 205-267 1-63 (63)
10 PF00804 Syntaxin: Syntaxin; 99.5 3.5E-12 7.5E-17 99.2 15.2 103 29-136 1-103 (103)
11 cd00193 t_SNARE Soluble NSF (N 99.3 1.1E-11 2.3E-16 87.2 8.3 59 204-262 2-60 (60)
12 smart00397 t_SNARE Helical reg 99.2 1.8E-10 4E-15 82.2 9.2 63 200-262 4-66 (66)
13 KOG3202 SNARE protein TLG1/Syn 99.1 2.6E-07 5.6E-12 82.4 25.9 224 30-287 5-230 (235)
14 PF14523 Syntaxin_2: Syntaxin- 98.6 3.3E-06 7.2E-11 65.8 13.9 100 40-152 1-100 (102)
15 KOG3894 SNARE protein Syntaxin 98.1 0.0054 1.2E-07 56.5 25.4 87 198-284 222-308 (316)
16 PF00957 Synaptobrevin: Synapt 97.8 0.00067 1.5E-08 51.6 12.4 82 208-289 3-85 (89)
17 KOG3385 V-SNARE [Intracellular 97.5 0.0011 2.3E-08 52.4 9.6 81 205-287 33-113 (118)
18 KOG0860 Synaptobrevin/VAMP-lik 97.5 0.0025 5.4E-08 50.5 11.7 81 209-291 30-113 (116)
19 PF09753 Use1: Membrane fusion 96.8 0.015 3.2E-07 52.8 11.3 79 209-294 171-249 (251)
20 KOG1666 V-SNARE [Intracellular 96.8 0.34 7.3E-06 42.6 25.0 69 215-284 142-210 (220)
21 COG5074 t-SNARE complex subuni 96.5 0.041 8.9E-07 48.8 11.0 54 210-263 194-247 (280)
22 COG5325 t-SNARE complex subuni 96.2 0.97 2.1E-05 41.2 26.0 86 200-289 194-279 (283)
23 PF05478 Prominin: Prominin; 95.4 4.5 9.8E-05 42.9 26.2 83 209-297 358-441 (806)
24 KOG0810 SNARE protein Syntaxin 95.2 2.7 5.9E-05 39.1 28.2 93 197-292 202-294 (297)
25 KOG0811 SNARE protein PEP12/VA 93.0 7.2 0.00016 35.8 23.7 86 200-288 179-264 (269)
26 PF00957 Synaptobrevin: Synapt 91.5 4.7 0.0001 30.2 12.6 27 243-269 28-54 (89)
27 KOG3065 SNAP-25 (synaptosome-a 91.3 0.98 2.1E-05 41.5 8.0 57 205-261 215-271 (273)
28 PF03908 Sec20: Sec20; InterP 89.2 8.1 0.00018 29.3 12.1 53 231-283 31-83 (92)
29 PF14992 TMCO5: TMCO5 family 85.7 30 0.00064 32.0 13.7 56 198-253 120-175 (280)
30 PF09753 Use1: Membrane fusion 83.8 27 0.00059 31.5 12.5 72 200-274 154-226 (251)
31 KOG0859 Synaptobrevin/VAMP-lik 83.8 3 6.4E-05 36.4 5.7 86 209-297 126-215 (217)
32 PHA02844 putative transmembran 83.4 1.9 4.1E-05 31.4 3.7 30 269-298 45-74 (75)
33 PHA02650 hypothetical protein; 80.4 3.1 6.8E-05 30.7 4.0 31 269-299 46-76 (81)
34 PF03904 DUF334: Domain of unk 78.7 49 0.0011 29.6 13.5 45 244-288 121-165 (230)
35 PF06789 UPF0258: Uncharacteri 77.9 0.48 1E-05 39.4 -1.0 11 282-292 145-155 (159)
36 KOG2678 Predicted membrane pro 77.3 53 0.0012 29.3 13.2 49 209-260 159-207 (244)
37 PF11239 DUF3040: Protein of u 76.6 5.7 0.00012 29.5 4.6 19 236-254 9-27 (82)
38 PRK14762 membrane protein; Pro 76.4 4.3 9.4E-05 23.2 2.9 20 273-292 4-23 (27)
39 KOG4331 Polytopic membrane pro 75.6 91 0.002 33.1 14.2 69 229-298 379-458 (865)
40 PF10267 Tmemb_cc2: Predicted 73.2 94 0.002 30.2 15.1 37 22-58 206-242 (395)
41 PHA02819 hypothetical protein; 71.4 7.2 0.00016 28.2 3.8 25 270-294 44-68 (71)
42 KOG0859 Synaptobrevin/VAMP-lik 70.3 38 0.00083 29.7 8.7 14 233-246 137-150 (217)
43 KOG0972 Huntingtin interacting 69.1 1E+02 0.0022 28.8 11.9 33 11-43 181-213 (384)
44 PHA02975 hypothetical protein; 68.2 8.7 0.00019 27.6 3.6 29 265-293 37-65 (69)
45 PF08999 SP_C-Propep: Surfacta 67.6 8.8 0.00019 28.5 3.7 11 286-296 49-59 (93)
46 PF04505 Dispanin: Interferon- 66.9 3.5 7.7E-05 30.8 1.6 31 254-284 48-78 (82)
47 PHA03054 IMV membrane protein; 65.6 11 0.00024 27.3 3.7 20 270-289 46-65 (72)
48 PF02346 Vac_Fusion: Chordopox 65.3 42 0.00091 23.3 6.5 45 209-253 2-46 (57)
49 KOG3850 Predicted membrane pro 64.3 1.4E+02 0.0031 28.9 13.7 37 206-244 307-343 (455)
50 PF10779 XhlA: Haemolysin XhlA 63.7 52 0.0011 23.6 9.4 43 234-280 18-60 (71)
51 KOG3251 Golgi SNAP receptor co 63.4 1.1E+02 0.0023 27.2 22.8 25 78-102 32-56 (213)
52 PF13314 DUF4083: Domain of un 62.2 15 0.00032 25.6 3.7 17 281-297 15-31 (58)
53 PRK04325 hypothetical protein; 60.2 64 0.0014 23.5 8.2 45 210-254 11-55 (74)
54 PF00523 Fusion_gly: Fusion gl 59.8 14 0.00029 37.0 4.6 30 241-270 436-465 (490)
55 PRK00523 hypothetical protein; 59.8 12 0.00026 27.2 3.1 10 287-296 15-24 (72)
56 KOG1693 emp24/gp25L/p24 family 59.4 54 0.0012 28.7 7.6 27 272-299 177-203 (209)
57 PF04102 SlyX: SlyX; InterPro 58.6 65 0.0014 23.0 7.0 48 209-256 5-52 (69)
58 PF00435 Spectrin: Spectrin re 58.5 68 0.0015 23.3 10.7 61 27-88 33-93 (105)
59 COG3763 Uncharacterized protei 58.2 13 0.00027 27.0 3.0 17 281-297 8-24 (71)
60 KOG3202 SNARE protein TLG1/Syn 57.6 85 0.0018 28.3 8.9 20 230-249 146-165 (235)
61 PF09889 DUF2116: Uncharacteri 56.3 35 0.00076 23.9 4.9 14 256-269 25-38 (59)
62 PF12911 OppC_N: N-terminal TM 56.0 23 0.0005 23.8 4.0 27 268-294 14-40 (56)
63 PRK00295 hypothetical protein; 55.9 73 0.0016 22.8 8.0 45 210-254 7-51 (68)
64 KOG0809 SNARE protein TLG2/Syn 55.8 1.8E+02 0.0038 27.2 23.1 92 194-289 211-302 (305)
65 PRK10884 SH3 domain-containing 55.4 1.5E+02 0.0032 26.1 13.6 40 222-261 118-157 (206)
66 PF12352 V-SNARE_C: Snare regi 54.9 69 0.0015 22.2 10.1 55 209-263 9-63 (66)
67 PF05667 DUF812: Protein of un 51.4 2.9E+02 0.0064 28.4 17.3 38 206-243 545-582 (594)
68 KOG0862 Synaptobrevin/VAMP-lik 50.7 1.4E+02 0.0031 26.4 8.9 35 209-243 135-169 (216)
69 PRK01844 hypothetical protein; 50.6 20 0.00044 26.1 3.1 11 286-296 13-23 (72)
70 PF00523 Fusion_gly: Fusion gl 50.4 13 0.00028 37.1 2.7 23 239-261 441-463 (490)
71 TIGR02230 ATPase_gene1 F0F1-AT 49.8 82 0.0018 24.5 6.5 46 251-296 19-65 (100)
72 PF06072 Herpes_US9: Alphaherp 49.4 56 0.0012 22.9 4.9 13 254-266 10-22 (60)
73 PF00517 GP41: Retroviral enve 48.6 62 0.0013 28.4 6.5 27 270-296 151-177 (204)
74 PF12751 Vac7: Vacuolar segreg 48.5 22 0.00047 34.3 3.8 14 285-298 312-325 (387)
75 PF09177 Syntaxin-6_N: Syntaxi 48.4 1.2E+02 0.0026 23.0 10.9 63 32-104 2-64 (97)
76 PF05531 NPV_P10: Nucleopolyhe 48.2 1.1E+02 0.0024 22.5 7.1 49 39-89 8-56 (75)
77 PF14575 EphA2_TM: Ephrin type 47.5 23 0.0005 25.9 3.0 12 273-284 2-13 (75)
78 PF03670 UPF0184: Uncharacteri 46.7 1.2E+02 0.0027 22.7 8.6 48 11-58 2-49 (83)
79 PHA02692 hypothetical protein; 46.5 33 0.00071 24.8 3.5 8 271-278 44-51 (70)
80 PF00804 Syntaxin: Syntaxin; 46.3 45 0.00098 24.8 4.7 94 43-141 8-101 (103)
81 PF11598 COMP: Cartilage oligo 46.0 48 0.0011 21.9 4.0 27 212-238 5-31 (45)
82 PF12669 P12: Virus attachment 44.0 16 0.00035 25.4 1.7 6 293-298 18-23 (58)
83 PF06072 Herpes_US9: Alphaherp 43.8 1.1E+02 0.0024 21.4 6.0 8 286-293 49-56 (60)
84 PF13198 DUF4014: Protein of u 43.2 44 0.00095 24.2 3.7 16 263-278 7-22 (72)
85 TIGR02833 spore_III_AB stage I 42.9 71 0.0015 27.1 5.8 29 256-284 137-166 (170)
86 PF04906 Tweety: Tweety; Inte 42.8 93 0.002 30.3 7.3 8 292-299 204-211 (406)
87 PRK08307 stage III sporulation 42.8 71 0.0015 27.1 5.8 58 217-284 108-167 (171)
88 COG4640 Predicted membrane pro 42.7 29 0.00063 33.5 3.6 14 287-300 65-78 (465)
89 PF12751 Vac7: Vacuolar segreg 42.5 26 0.00057 33.7 3.4 27 270-296 301-327 (387)
90 KOG1666 V-SNARE [Intracellular 42.3 93 0.002 27.6 6.4 61 236-296 153-218 (220)
91 PF09548 Spore_III_AB: Stage I 42.2 74 0.0016 26.9 5.9 27 257-283 138-165 (170)
92 TIGR02302 aProt_lowcomp conser 41.8 3.4E+02 0.0074 29.3 11.7 23 219-241 620-642 (851)
93 KOG3065 SNAP-25 (synaptosome-a 41.1 1.1E+02 0.0024 28.2 7.1 44 217-260 88-131 (273)
94 PF14812 PBP1_TM: Transmembran 40.9 1.6 3.4E-05 32.6 -4.0 11 266-276 61-71 (81)
95 PHA02673 ORF109 EEV glycoprote 40.9 32 0.00069 29.0 3.2 16 261-276 20-35 (161)
96 PF05781 MRVI1: MRVI1 protein; 40.3 83 0.0018 31.7 6.5 20 281-300 486-505 (538)
97 PHA02819 hypothetical protein; 39.7 40 0.00086 24.4 3.1 29 264-292 35-63 (71)
98 PF10661 EssA: WXG100 protein 39.2 52 0.0011 27.3 4.3 21 271-291 118-138 (145)
99 PRK00736 hypothetical protein; 39.2 1.4E+02 0.0031 21.3 7.8 45 210-254 7-51 (68)
100 KOG0812 SNARE protein SED5/Syn 39.0 3.3E+02 0.0071 25.4 10.4 69 213-284 239-307 (311)
101 PRK10573 type IV pilin biogene 38.5 3.6E+02 0.0078 25.8 11.0 38 213-250 111-148 (399)
102 PF13800 Sigma_reg_N: Sigma fa 38.1 36 0.00078 25.8 3.0 7 269-275 8-14 (96)
103 PF12575 DUF3753: Protein of u 38.1 41 0.00088 24.5 3.0 22 267-288 40-61 (72)
104 cd00193 t_SNARE Soluble NSF (N 37.3 1.2E+02 0.0026 19.9 8.4 53 213-265 4-56 (60)
105 PF10814 DUF2562: Protein of u 37.0 2.3E+02 0.0049 23.0 7.6 30 244-273 63-92 (133)
106 PHA02650 hypothetical protein; 36.9 44 0.00095 24.8 3.0 26 268-293 42-67 (81)
107 PF01601 Corona_S2: Coronaviru 36.3 15 0.00033 37.3 0.8 65 32-101 256-320 (610)
108 PF10496 Syntaxin-18_N: SNARE- 36.2 68 0.0015 23.8 4.2 36 23-58 31-66 (87)
109 PRK02793 phi X174 lysis protei 36.0 1.7E+02 0.0036 21.2 7.8 46 209-254 9-54 (72)
110 PRK02119 hypothetical protein; 36.0 1.7E+02 0.0037 21.2 8.0 47 208-254 9-55 (73)
111 COG2966 Uncharacterized conser 35.1 50 0.0011 30.0 3.9 41 240-280 94-134 (250)
112 COG5613 Uncharacterized conser 34.8 4.2E+02 0.0091 25.4 10.2 14 124-137 71-84 (400)
113 PHA02844 putative transmembran 34.7 53 0.0011 24.0 3.1 28 265-292 38-65 (75)
114 PF09164 VitD-bind_III: Vitami 34.6 65 0.0014 23.0 3.5 15 163-177 26-40 (68)
115 COG3736 VirB8 Type IV secretor 34.4 1.1E+02 0.0023 27.8 5.7 21 258-278 29-49 (239)
116 PF06657 Cep57_MT_bd: Centroso 34.2 1.9E+02 0.0041 21.3 10.0 64 27-90 9-72 (79)
117 PF10749 DUF2534: Protein of u 34.1 81 0.0018 23.6 4.1 16 268-283 11-26 (85)
118 PF13940 Ldr_toxin: Toxin Ldr, 33.8 38 0.00083 20.8 1.9 16 283-298 18-33 (35)
119 PF01519 DUF16: Protein of unk 32.4 2.4E+02 0.0053 22.0 7.8 44 208-251 53-96 (102)
120 PF13779 DUF4175: Domain of un 32.3 5.2E+02 0.011 27.8 11.3 27 215-241 581-607 (820)
121 PF04888 SseC: Secretion syste 32.3 4E+02 0.0087 24.5 9.8 36 248-283 35-72 (306)
122 PF09788 Tmemb_55A: Transmembr 31.8 55 0.0012 29.8 3.5 27 270-297 195-221 (256)
123 PF08412 Ion_trans_N: Ion tran 31.7 1.2E+02 0.0025 22.4 4.6 25 272-296 47-71 (77)
124 COG5278 Predicted periplasmic 31.3 3.7E+02 0.008 23.7 10.9 13 204-216 104-116 (207)
125 PF07412 Geminin: Geminin; In 31.2 1.9E+02 0.004 25.5 6.5 70 181-251 106-175 (200)
126 PHA03049 IMV membrane protein; 31.2 66 0.0014 23.0 3.1 10 283-292 14-23 (68)
127 PRK04406 hypothetical protein; 31.1 2.1E+02 0.0046 20.9 7.8 45 209-253 12-56 (75)
128 COG4942 Membrane-bound metallo 30.7 5.3E+02 0.011 25.4 10.2 59 203-261 40-98 (420)
129 TIGR02120 GspF general secreti 30.2 4.9E+02 0.011 24.8 10.9 42 213-254 113-154 (399)
130 PRK10381 LPS O-antigen length 30.1 47 0.001 32.1 3.0 11 286-296 54-64 (377)
131 PF05961 Chordopox_A13L: Chord 29.8 68 0.0015 23.0 3.0 8 285-292 16-23 (68)
132 PHA03240 envelope glycoprotein 29.6 57 0.0012 29.0 3.1 17 271-287 211-227 (258)
133 PF11166 DUF2951: Protein of u 29.5 2.6E+02 0.0057 21.5 12.2 42 208-249 11-52 (98)
134 PHA03395 p10 fibrous body prot 29.3 2.5E+02 0.0055 21.2 6.8 55 39-99 8-62 (87)
135 PRK13673 hypothetical protein; 29.1 1.2E+02 0.0026 24.3 4.7 16 255-270 75-90 (118)
136 PF05399 EVI2A: Ectropic viral 28.7 58 0.0013 28.8 3.0 12 272-283 131-142 (227)
137 PF10498 IFT57: Intra-flagella 28.7 5.3E+02 0.011 24.7 15.5 30 15-44 178-207 (359)
138 PLN03160 uncharacterized prote 28.7 17 0.00037 32.2 -0.2 9 272-280 40-48 (219)
139 PF07798 DUF1640: Protein of u 28.2 3.7E+02 0.008 22.7 13.4 7 258-264 142-148 (177)
140 PHA03046 Hypothetical protein; 28.1 3.3E+02 0.0073 22.2 7.0 45 209-253 85-129 (142)
141 PHA03054 IMV membrane protein; 28.1 78 0.0017 22.9 3.0 24 268-291 41-64 (72)
142 PF09548 Spore_III_AB: Stage I 28.0 2.3E+02 0.0051 23.8 6.6 60 219-284 109-169 (170)
143 PHA02513 V1 structural protein 28.0 1.7E+02 0.0037 23.2 5.2 21 276-296 71-91 (135)
144 PHA02675 ORF104 fusion protein 27.6 2.7E+02 0.0058 20.9 7.5 42 213-254 35-76 (90)
145 PRK15471 chain length determin 27.2 56 0.0012 30.8 2.9 14 285-298 44-57 (325)
146 COG4068 Uncharacterized protei 27.2 86 0.0019 21.9 3.0 12 256-267 30-41 (64)
147 PF07106 TBPIP: Tat binding pr 27.1 3.7E+02 0.008 22.4 15.0 69 25-100 69-137 (169)
148 PF00429 TLV_coat: ENV polypro 27.0 2.5E+02 0.0055 28.6 7.7 30 207-236 434-463 (561)
149 PF02167 Cytochrom_C1: Cytochr 26.9 2.2E+02 0.0047 25.4 6.4 52 246-297 166-217 (219)
150 PF08693 SKG6: Transmembrane a 26.4 45 0.00097 21.5 1.4 9 291-299 31-39 (40)
151 PF05739 SNARE: SNARE domain; 26.2 2.1E+02 0.0046 19.3 8.6 48 209-256 12-59 (63)
152 PHA02642 C-type lectin-like pr 25.9 35 0.00075 30.4 1.2 14 270-283 48-61 (216)
153 PRK10573 type IV pilin biogene 25.2 4E+02 0.0086 25.5 8.5 52 200-252 302-353 (399)
154 PF08372 PRT_C: Plant phosphor 24.9 4.2E+02 0.0091 22.3 8.0 17 202-218 56-72 (156)
155 smart00150 SPEC Spectrin repea 24.8 2.6E+02 0.0057 19.9 8.7 38 25-62 28-65 (101)
156 TIGR02120 GspF general secreti 24.8 6.1E+02 0.013 24.1 10.8 40 213-253 316-355 (399)
157 PRK13887 conjugal transfer pro 24.3 1.9E+02 0.0042 26.0 5.8 8 267-274 50-57 (250)
158 PF08580 KAR9: Yeast cortical 24.0 8.6E+02 0.019 25.6 12.9 106 29-144 37-151 (683)
159 PRK15041 methyl-accepting chem 23.9 7.5E+02 0.016 24.8 27.4 54 201-254 433-486 (554)
160 PF08374 Protocadherin: Protoc 23.8 31 0.00066 30.6 0.4 31 270-300 36-67 (221)
161 PHA02831 EEV host range protei 23.7 67 0.0015 29.5 2.6 24 276-299 233-256 (268)
162 PF13239 2TM: 2TM domain 23.6 1.5E+02 0.0032 21.8 4.1 10 261-270 4-13 (83)
163 PHA02414 hypothetical protein 23.6 3.5E+02 0.0076 20.9 7.7 44 209-252 30-73 (111)
164 COG1459 PulF Type II secretory 23.2 5.9E+02 0.013 24.8 9.2 54 199-253 299-352 (397)
165 PF06789 UPF0258: Uncharacteri 23.0 45 0.00097 28.0 1.2 25 271-295 130-154 (159)
166 PF05597 Phasin: Poly(hydroxya 22.6 4.2E+02 0.009 21.6 6.8 25 63-87 104-128 (132)
167 PF15188 CCDC-167: Coiled-coil 22.3 3.5E+02 0.0075 20.4 7.3 62 35-102 5-66 (85)
168 PF07432 Hc1: Histone H1-like 22.3 4.1E+02 0.009 21.3 6.4 44 220-263 2-45 (123)
169 PF06738 DUF1212: Protein of u 21.7 1.4E+02 0.0031 25.3 4.2 28 249-276 81-108 (193)
170 COG3352 FlaC Putative archaeal 21.6 4.9E+02 0.011 21.9 8.6 65 197-261 75-140 (157)
171 KOG3950 Gamma/delta sarcoglyca 21.4 1.1E+02 0.0025 27.7 3.5 6 291-296 52-57 (292)
172 PF06422 PDR_CDR: CDR ABC tran 21.0 1.6E+02 0.0035 22.7 4.0 23 254-276 32-54 (103)
173 PF00584 SecE: SecE/Sec61-gamm 20.6 2.2E+02 0.0047 19.2 4.1 16 250-265 4-19 (57)
174 PF07457 DUF1516: Protein of u 20.6 1.8E+02 0.0039 22.9 4.2 25 254-278 76-100 (110)
175 smart00397 t_SNARE Helical reg 20.1 2.8E+02 0.006 18.4 9.3 55 210-264 7-61 (66)
176 PF11044 TMEMspv1-c74-12: Plec 20.1 2E+02 0.0043 19.0 3.5 12 272-283 4-15 (49)
No 1
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-54 Score=396.36 Aligned_cols=289 Identities=39% Similarity=0.637 Sum_probs=256.3
Q ss_pred CCcchhhhhhccccccccCCc-----cccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHH
Q 045802 1 MNDLISNSFKRYSNVDLEAGG-----VIRKGTENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRA 75 (301)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~ 75 (301)
|||+++.+|.++.+-|.+.+. ....++..|+.||.+|++|+..|..+...+++|..+|.+. +.++...+.++.
T Consensus 1 M~d~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~--l~~~~~~~~~k~ 78 (297)
T KOG0810|consen 1 MNDRLSELLARSVSEDNELDDVEGHTGSADGDSNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKS--LHSPNADKELKR 78 (297)
T ss_pred CccccHHHHcCchhhcccccccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--hccccccHHHHH
Confidence 999999999999877666651 1223458899999999999999999999999999999655 455556788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045802 76 RMDSDVEQVLKRVKVIKGKLEALEKSNAANRKVPGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIE 155 (301)
Q Consensus 76 ~i~~l~~~i~~~~~~i~~~L~~l~~~~~~~k~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~ 155 (301)
+|+.++.++.+.++.|+.+|+.+++.+......+ +.++..|+|++++..++++|.++|.+|+.+|..|+.+|+++++
T Consensus 79 ~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~---~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~ 155 (297)
T KOG0810|consen 79 KLESLVDEIRRRARKIKTKLKALEKENEADETQN---RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQ 155 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988754333 3345679999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHhhCCCchhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045802 156 RRYFTVTGQQADEQMIENLISSGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQG 235 (301)
Q Consensus 156 r~~~~i~~~~~s~eeie~~~e~g~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qg 235 (301)
|||.++.+..+++++++.++++|+++.|++.++. ++++++.+|.++++||.+|++||++|.|||+||.|||.||+.||
T Consensus 156 Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~--~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~Qg 233 (297)
T KOG0810|consen 156 RQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQ--DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQG 233 (297)
T ss_pred HHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888655548999999999999999999999887 44667899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 045802 236 HQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVLIIVFLFPLISTLI 296 (301)
Q Consensus 236 e~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i~~~iiiilii~~~i~~~~~ 296 (301)
+|||+||+||.+|.+||++|..++++|.+||+++|||.||+|++++|+++|+++++++.|.
T Consensus 234 Emvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~~~~ 294 (297)
T KOG0810|consen 234 EMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVIVVPLV 294 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhhccccc
Confidence 9999999999999999999999999999999999999999988888887777775554443
No 2
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.5e-36 Score=261.46 Aligned_cols=242 Identities=23% Similarity=0.384 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCCC
Q 045802 31 DKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKVPG 110 (301)
Q Consensus 31 ~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~~~~~k~~~~ 110 (301)
..|..++..|+..++.++..++++..+|.+.+.-.+......++..|+..+.+++.+-+.++..++..++..-
T Consensus 21 ~~f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~i------- 93 (280)
T COG5074 21 VTFMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGI------- 93 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhccc-------
Confidence 4566799999999999999999999999988766655566778899999999999999999999999886411
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCHHHHHHHhhCCCchh-HHHHHHH
Q 045802 111 CGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISSGESEN-FLQKAIQ 189 (301)
Q Consensus 111 ~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~r~~~~i~~~~~s~eeie~~~e~g~~~~-~~q~~l~ 189 (301)
-...+..|-.....+|.++++.|+.++..|+..|+++.+|||. |..|++|+++++..+.+.++++ |.|.+|.
T Consensus 94 ------hl~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~-Ia~P~ATEdeve~aInd~nG~qvfsqalL~ 166 (280)
T COG5074 94 ------HLANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQYI-IAQPEATEDEVEAAINDVNGQQVFSQALLN 166 (280)
T ss_pred ------chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh-hcCCccchHHHHHHhcccchHHHHHHHHHh
Confidence 1134566778888999999999999999999999999988776 6789999999999988765655 4445555
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccch
Q 045802 190 EQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDS 269 (301)
Q Consensus 190 ~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~ 269 (301)
.+++++++.+|.++++||.+|++||++|.||.+||+||+.||.+|.+++|.|+.|+..+..+|+.|..++.+|.+|.+++
T Consensus 167 anr~geAktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaa 246 (280)
T COG5074 167 ANRRGEAKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAA 246 (280)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHH
Confidence 67778899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred h--hHHHHHHHHHHHHHHH
Q 045802 270 R--KWTCIAILLGIVLIIV 286 (301)
Q Consensus 270 r--k~~~~~i~~~iiiili 286 (301)
| ||.||+||+++|++++
T Consensus 247 Rkkki~c~gI~~iii~viv 265 (280)
T COG5074 247 RKKKIRCYGICFIIIIVIV 265 (280)
T ss_pred HhcceehhhhHHHHHHHHH
Confidence 8 5788887777665533
No 3
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-34 Score=257.14 Aligned_cols=248 Identities=18% Similarity=0.249 Sum_probs=195.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc
Q 045802 26 GTENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAAN 105 (301)
Q Consensus 26 ~~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~~~~~ 105 (301)
.+..+|.|.+.+++|+..+..++.++++|.+.|.+++ .++++|.++-...|+.++.+|+.+++.+.+.|+.+....+.
T Consensus 52 ~d~lpP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl-~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~- 129 (305)
T KOG0809|consen 52 EDGLPPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHL-RPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQ- 129 (305)
T ss_pred ccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-
Confidence 3445789999999999999999999999999999987 78888877778999999999999999999999999864221
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCHHHHHHHhhCCCchhHHH
Q 045802 106 RKVPGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISSGESENFLQ 185 (301)
Q Consensus 106 k~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~r~~~~i~~~~~s~eeie~~~e~g~~~~~~q 185 (301)
+.+.+..++.|.+..++.+++.++.+||..|..|.+..+.+-.+-. ..++..+..+..++...|.+
T Consensus 130 -------~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~-------~~e~~~~~~~~~~dd~d~~~ 195 (305)
T KOG0809|consen 130 -------LSPSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQ-------EYEDSLDNTVDLPDDEDFSD 195 (305)
T ss_pred -------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhccc-------chhhhccccccCcchhhhhh
Confidence 2234556888999999999999999999999988777665433211 00111122223333333333
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 045802 186 KAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKES 265 (301)
Q Consensus 186 ~~l~~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~ 265 (301)
..++++.......+...+.+|.+||.++.+||.||++||+||+.||.+||.+||+||||++++..+|+.|.++|.||..|
T Consensus 196 ~~~qe~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~y 275 (305)
T KOG0809|consen 196 RTFQEQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERY 275 (305)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHH
Confidence 22222211122345667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHH
Q 045802 266 QKDSRKWTCIAILLGIVLIIVFLF 289 (301)
Q Consensus 266 ~~~~rk~~~~~i~~~iiiilii~~ 289 (301)
||+++|+.|+++++++||++++++
T Consensus 276 Qk~~~k~~~i~~L~l~ii~llvll 299 (305)
T KOG0809|consen 276 QKRNKKMKVILMLTLLIIALLVLL 299 (305)
T ss_pred HhcCCceEehHHHHHHHHHHHHHH
Confidence 999999998888887776654444
No 4
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.9e-29 Score=223.28 Aligned_cols=238 Identities=21% Similarity=0.282 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCCC
Q 045802 31 DKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKVPG 110 (301)
Q Consensus 31 ~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~~~~~k~~~~ 110 (301)
..|-....+|...|..+...+..|.+.+. .++++.+.++++.+++.....+.++.+.+...|+.+...
T Consensus 17 ~~~~~l~~~i~~~i~~i~~~~~~l~r~~~---~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~--------- 84 (269)
T KOG0811|consen 17 FDFQQLAQEIAANIQRINQQVLSLLRFLN---SLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTL--------- 84 (269)
T ss_pred CcHhHHHHHHHHHHHHHhHHHHHHHHHHH---HcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 36778889999999999999999988885 457788889999999999999999999999999998863
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCC---HHH--HHHHhhCCCchhHHH
Q 045802 111 CGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQAD---EQM--IENLISSGESENFLQ 185 (301)
Q Consensus 111 ~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~r~~~~i~~~~~s---~ee--ie~~~e~g~~~~~~q 185 (301)
+ .+.+.+..+.+...|.+.|..+++.|+.+|.......+ +- . ...+...+ +++ .......+.. ..+
T Consensus 85 ~--~~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek--~~--~-~a~~s~~s~~~~~~~~~~~~~~~~~~--~~~ 155 (269)
T KOG0811|consen 85 R--LESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREK--IP--M-VARGSQNSQQLDEESPRVDELSNNGS--QSQ 155 (269)
T ss_pred c--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc--cc--c-cccccccchhhhhhhhhhhhhhccch--hhh
Confidence 1 13456888899999999999999999999987665544 10 0 00011111 111 1111111111 111
Q ss_pred HH--HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045802 186 KA--IQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAK 263 (301)
Q Consensus 186 ~~--l~~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~ 263 (301)
.. .+.+....+...+..+++|...|.+||..|.||++||+||+.||++||++||.||+||++|..||+.|..+|.+|.
T Consensus 156 ~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~ 235 (269)
T KOG0811|consen 156 QQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAA 235 (269)
T ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1101101123456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccchhhHHHHHHHHHHHHHHHHHH
Q 045802 264 ESQKDSRKWTCIAILLGIVLIIVFLF 289 (301)
Q Consensus 264 ~~~~~~rk~~~~~i~~~iiiilii~~ 289 (301)
+|++++|||.|+++++++++++++.+
T Consensus 236 ~yq~~~~k~~~~ll~v~~~v~lii~l 261 (269)
T KOG0811|consen 236 KYQRKARKKKCILLLVGGPVGLIIGL 261 (269)
T ss_pred HHHHHhcCchhhhhHHHHHHHHHHHH
Confidence 99999999999988888777765555
No 5
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.91 E-value=7.2e-22 Score=175.37 Aligned_cols=256 Identities=15% Similarity=0.222 Sum_probs=155.8
Q ss_pred cccCCccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 16 DLEAGGVIRKGTENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKL 95 (301)
Q Consensus 16 ~~~~~~~~~e~~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L 95 (301)
|.++.--.-+.+...|.|.....++...+..+..++..+..-+.+. ..+++.+...-.+.|+.+...++.....+.+.+
T Consensus 19 d~~~n~~~~e~~~l~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~-~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~ 97 (283)
T COG5325 19 DEYKNQHRKEDDALTPTFILSAASVDQELTAVRRSISRLGKVYAKH-TEPSFSDKSEKEDEIDELSKKVNQDLQRCEKIL 97 (283)
T ss_pred chhhhhhHHhhhccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444434445567788999999999999999999999999888776 355555544444556666655555555555444
Q ss_pred HHHHHhhHhccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCC-CHHHHHHH
Q 045802 96 EALEKSNAANRKVPGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQA-DEQMIENL 174 (301)
Q Consensus 96 ~~l~~~~~~~k~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~r~~~~i~~~~~-s~eeie~~ 174 (301)
+......... ..-...-.-.|.......+++.-...|+.-+..|.+..+. ...+..+ .+++-+..
T Consensus 98 ~~~~~~~~s~-------~~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~-------~~~~~~~l~eee~e~~ 163 (283)
T COG5325 98 KTKYKNLQSS-------FLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRN-------KNNDQHPLEEEEDEES 163 (283)
T ss_pred HHHHHHHHHH-------HHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHh-------cccccCchhhhhhhhh
Confidence 4433322110 0000000001111222233333333444433333322211 1111111 22222222
Q ss_pred hh-CCCchhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHH
Q 045802 175 IS-SGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVR 253 (301)
Q Consensus 175 ~e-~g~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~ 253 (301)
.. .|.....-++.+.. .+.-.....+.+|.++|.+|.++|.||++||.||+.+|.+||+.+|+||+|++++.+|++
T Consensus 164 ~~~~~sq~~lqq~~l~~---ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k 240 (283)
T COG5325 164 LSSLGSQQTLQQQGLSN---EELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLK 240 (283)
T ss_pred hhccchhhHHHHhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHH
Confidence 33 22212222223322 122233344899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHH
Q 045802 254 RGTEQLEFAKESQKDSRKWTCIAILLGIVLIIVFLF 289 (301)
Q Consensus 254 ~~~~~l~kA~~~~~~~rk~~~~~i~~~iiiilii~~ 289 (301)
.|.++|.||..|+|+.+||..|++++++||.+++.+
T Consensus 241 ~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lfv~l 276 (283)
T COG5325 241 NANKELEKAPAHQRRTKKCRFYLLLILLVVLLFVSL 276 (283)
T ss_pred hhHHHHHHhHHHHhhhccchhhHHHHHHHHHHHHHH
Confidence 999999999999999988866666666555544433
No 6
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.88 E-value=7.5e-21 Score=159.18 Aligned_cols=149 Identities=34% Similarity=0.553 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCC
Q 045802 30 LDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKVP 109 (301)
Q Consensus 30 ~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~~~~~k~~~ 109 (301)
|++||..|++|+..|..|+.+++.|+.+|...++..+ ..+.++.+|+.+..+++.+++.++..|+.|+..+....
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~--~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~--- 75 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPD--ADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNE--- 75 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 6899999999999999999999999999988755443 45678999999999999999999999999998755421
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCHHHHHHHhhCCCchhHHH
Q 045802 110 GCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISSGESENFLQ 185 (301)
Q Consensus 110 ~~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~r~~~~i~~~~~s~eeie~~~e~g~~~~~~q 185 (301)
. .+++++.|++++++.+|.++|+++|.+|+.+|..|+.+|+++++|+|. +.+|++||+|+++++++|+++.|++
T Consensus 76 ~-~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~-i~~~~~tdeei~~~~~~~~~~~~~~ 149 (151)
T cd00179 76 A-LNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLE-ITGGEATDEELEDMLESGNSEIFTS 149 (151)
T ss_pred c-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCChHHHHHHHHcCChhhhcC
Confidence 1 126788999999999999999999999999999999999999998877 4788999999999999998877765
No 7
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.2e-14 Score=129.94 Aligned_cols=239 Identities=15% Similarity=0.201 Sum_probs=151.7
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcc
Q 045802 27 TENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANR 106 (301)
Q Consensus 27 ~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~~~~~k 106 (301)
...-.+|...+..|...|.....++++|..+.++. ++.+ |.+ -+|..++--|+...+.+...|-.+..-...
T Consensus 37 ~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrk-s~f~--Dr~---VeI~eLT~iikqdi~sln~~i~~Lqei~~~-- 108 (311)
T KOG0812|consen 37 VSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRK-SLFD--DRP---VEIQELTFIIKQDITSLNSQIAQLQEIVKA-- 108 (311)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccc--Ccc---hhhHHHHHHHhcchHHHHHHHHHHHHHHHH--
Confidence 34445999999999999999999999999998653 4544 211 135555555555555555544444322111
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhhhhhc-----ccC-CC----CCHHHHHH-
Q 045802 107 KVPGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKE--TIERRYFT-----VTG-QQ----ADEQMIEN- 173 (301)
Q Consensus 107 ~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~--~~~r~~~~-----i~~-~~----~s~eeie~- 173 (301)
.+..++......-++++..|..++..+...|+.+-.. +.+.-. ++.+.... +.+ |- +.......
T Consensus 109 --~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~-Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l 185 (311)
T KOG0812|consen 109 --NGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEI-RTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLL 185 (311)
T ss_pred --hccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhh
Confidence 1122221113344788899999999999999988432 322211 11122211 111 10 00000101
Q ss_pred ------------HhhCCCch--hHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 045802 174 ------------LISSGESE--NFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLN 239 (301)
Q Consensus 174 ------------~~e~g~~~--~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id 239 (301)
.++.|+++ +..|..+. .....++++|.+.+..||.+|.||..||.+||+||.+|||++.
T Consensus 186 ~~~~~~~sq~~~~ln~gd~~~~qqqQm~ll-------~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~ 258 (311)
T KOG0812|consen 186 VDPKDEASQDVESLNMGDSSNPQQQQMALL-------DESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQ 258 (311)
T ss_pred cCchhhcccccccccccCCCCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122221 11111111 1235679999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHH
Q 045802 240 DIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVL 283 (301)
Q Consensus 240 ~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i~~~iii 283 (301)
+||.||+.+..+++.|..+|.|....-+++|+.+.=++.+++|+
T Consensus 259 RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivF 302 (311)
T KOG0812|consen 259 RIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVF 302 (311)
T ss_pred HHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999988876554444333333
No 8
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=99.61 E-value=4.9e-14 Score=112.69 Aligned_cols=116 Identities=34% Similarity=0.557 Sum_probs=100.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCC
Q 045802 29 NLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKV 108 (301)
Q Consensus 29 ~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~~~~~k~~ 108 (301)
.|++||..|++|+..|..|+.++..|..+|...++.+. ..+.++.+++.+..+++.+++.|+..|+.|+..+....
T Consensus 2 ~~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~-- 77 (117)
T smart00503 2 NLDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPD--ADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENR-- 77 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc--
Confidence 58999999999999999999999999999998865443 34678899999999999999999999999998765421
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 109 PGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYK 151 (301)
Q Consensus 109 ~~~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k 151 (301)
. .++++.|++++++.+|+++|+++|.+|+.+|..|+.+||
T Consensus 78 -~--~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 78 -A--SGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred -c--cCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 245678999999999999999999999999988876653
No 9
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.49 E-value=3.2e-13 Score=96.45 Aligned_cols=63 Identities=37% Similarity=0.533 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 045802 205 ERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQK 267 (301)
Q Consensus 205 ~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~ 267 (301)
+|+++|..|+.++.+|++||.+|+.+|.+||++||+|+.|++.|..++..|..+|.+|.+|+|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 588999999999999999999999999999999999999999999999999999999999986
No 10
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=99.46 E-value=3.5e-12 Score=99.22 Aligned_cols=103 Identities=23% Similarity=0.437 Sum_probs=88.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCC
Q 045802 29 NLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKV 108 (301)
Q Consensus 29 ~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~~~~~k~~ 108 (301)
+||+||+.|++|+..|..|+.++++|..+|.+.+..+. .+...+.+|+.++.+|+.+++.++..|+.|+..+...
T Consensus 1 ~~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~--~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~--- 75 (103)
T PF00804_consen 1 FMPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPD--QDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDS--- 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---
Confidence 58999999999999999999999999999999876655 3367789999999999999999999999999875421
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 045802 109 PGCGPGSSVDRTRTSVVAGLGKKLKDTM 136 (301)
Q Consensus 109 ~~~~~~s~~~rir~~~~~~L~~~f~~~~ 136 (301)
.+.++++++.|++++++.+|+.+|+++|
T Consensus 76 ~~~~~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 76 EGEEPSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HCTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 1234567789999999999999999987
No 11
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.31 E-value=1.1e-11 Score=87.16 Aligned_cols=59 Identities=39% Similarity=0.583 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 045802 204 QERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFA 262 (301)
Q Consensus 204 ~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA 262 (301)
++|++++..|+.++.+|+.||.+|+.+|.+||++||+|++|++.+..++..|..+|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999999875
No 12
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.18 E-value=1.8e-10 Score=82.23 Aligned_cols=63 Identities=35% Similarity=0.515 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 045802 200 ISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFA 262 (301)
Q Consensus 200 l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA 262 (301)
...+++|+.+|..|+.++.+|+.||.+|+.+|.+||++||+|+++++.+..++..|...|.+|
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 456899999999999999999999999999999999999999999999999999999999864
No 13
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=2.6e-07 Score=82.37 Aligned_cols=224 Identities=17% Similarity=0.202 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCC
Q 045802 30 LDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKVP 109 (301)
Q Consensus 30 ~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~~~~~k~~~ 109 (301)
...|+....++....+.++..+.+-..+... .+ .+ .+.++..+.+........|+.+..-..+ .+
T Consensus 5 ~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~---~~--~~-------~~~~t~~lr~~i~~~~edl~~~~~il~~---~~ 69 (235)
T KOG3202|consen 5 EDPFFRVKNETLKLSEEIQGLYQRRSELLKD---TG--SD-------AEELTSVLRRSIEEDLEDLDELISILER---NP 69 (235)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---cc--ch-------hHHHHHHHHHHhHHHHHHHHHHHHHHHh---Cc
Confidence 3468888888888877777777776665542 11 11 2223333332222222333332222211 12
Q ss_pred -CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCHHHHHHHhh-CCCchhHHHHH
Q 045802 110 -GCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLIS-SGESENFLQKA 187 (301)
Q Consensus 110 -~~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~r~~~~i~~~~~s~eeie~~~e-~g~~~~~~q~~ 187 (301)
..+-+..+.+-|+..+..+..++..+-..|... .+... .-|.. ..+++..+...+.+-. .|.. +.+.
T Consensus 70 ~~~~ide~El~~R~~~i~~lr~q~~~~~~~~~~~--~~~~~----~~r~~--l~~~~~~~~~~~~~~~~~~~D--~v~~- 138 (235)
T KOG3202|consen 70 SKFGIDEFELSRRRRFIDNLRTQLRQMKSKMAMS--GFANS----NIRDI--LLGPEKSPNLDEAMSRASGLD--NVQE- 138 (235)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccc----cchhh--hcCCCCCCchhhhHHHhhccC--cHHH-
Confidence 222333456788888888888888777666651 11110 11112 2334443321121211 1211 0110
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 045802 188 IQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQK 267 (301)
Q Consensus 188 l~~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~ 267 (301)
.....-..+++....+..|+.+|+-+..+-..|+.-+.+||.+||+.++-++.+...+..+.+.|.+-.+ .+
T Consensus 139 -------~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~ 210 (235)
T KOG3202|consen 139 -------IVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MA 210 (235)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 0011223477888899999999999999999999999999999999999999999999999999999888 44
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 045802 268 DSRKWTCIAILLGIVLIIVF 287 (301)
Q Consensus 268 ~~rk~~~~~i~~~iiiilii 287 (301)
+.+..||+++++++++++++
T Consensus 211 s~~~~~~~il~l~~~~~lvv 230 (235)
T KOG3202|consen 211 SQCSQWCAILLLVGLLLLVV 230 (235)
T ss_pred ccccchhHHHHHHHHHHHHH
Confidence 44444555555544444333
No 14
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=98.56 E-value=3.3e-06 Score=65.80 Aligned_cols=100 Identities=14% Similarity=0.269 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCCCCCCCcHHHH
Q 045802 40 VKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKVPGCGPGSSVDR 119 (301)
Q Consensus 40 I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~~~~~k~~~~~~~~s~~~r 119 (301)
|...|..|...+..|+++.. .++++.|..++|++|+.+...+..+++.+...|+.+... .......+
T Consensus 1 is~~l~~in~~v~~l~k~~~---~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~----------~~~~~~~~ 67 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVN---QLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSL----------SSDRSNDR 67 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHH---HH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------H----HHH
T ss_pred CchHHHHHHHHHHHHHHHHH---HhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhhhhH
Confidence 45677888888888888775 457888999999999999999999999999999999863 01234567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 120 TRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKE 152 (301)
Q Consensus 120 ir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~ 152 (301)
..+.+...|++.|..++.+|+.+|..|....+.
T Consensus 68 ~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k~ 100 (102)
T PF14523_consen 68 QQKLQREKLSRDFKEALQEFQKAQRRYAEKEKQ 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 778899999999999999999999887765443
No 15
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0054 Score=56.54 Aligned_cols=87 Identities=22% Similarity=0.261 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHH
Q 045802 198 DTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAI 277 (301)
Q Consensus 198 ~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i 277 (301)
.-+....+--++++.|++.+.|+..|-.-++.-|-+|..-||.|-.++..|..|++.|++.|.+|.....+.|+|+.+++
T Consensus 222 ~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~l 301 (316)
T KOG3894|consen 222 RLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFL 301 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHH
Confidence 34556777788999999999999999999999999999999999999999999999999999999999998899987776
Q ss_pred HHHHHHH
Q 045802 278 LLGIVLI 284 (301)
Q Consensus 278 ~~~iiii 284 (301)
+++-.++
T Consensus 302 lvlsf~l 308 (316)
T KOG3894|consen 302 LVLSFSL 308 (316)
T ss_pred HHHHHHH
Confidence 6554443
No 16
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.82 E-value=0.00067 Score=51.58 Aligned_cols=82 Identities=15% Similarity=0.277 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccch-hhHHHHHHHHHHHHHHH
Q 045802 208 DAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDS-RKWTCIAILLGIVLIIV 286 (301)
Q Consensus 208 ~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~-rk~~~~~i~~~iiiili 286 (301)
..+.++...+.++.++..+=-.-+.+-|+-|+.++...+.-......-.+.-.+.++..... -|+++++++++++++++
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~ 82 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILI 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence 35678888888888888888788889999999999876655555444444333333322221 13444444444444444
Q ss_pred HHH
Q 045802 287 FLF 289 (301)
Q Consensus 287 i~~ 289 (301)
|++
T Consensus 83 i~~ 85 (89)
T PF00957_consen 83 III 85 (89)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 17
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.0011 Score=52.36 Aligned_cols=81 Identities=15% Similarity=0.307 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHH
Q 045802 205 ERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVLI 284 (301)
Q Consensus 205 ~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i~~~iiii 284 (301)
|-.+.+..|...+.-|..+--|++.-|..|..+||.++.....+......+...++.-.+. ++++.+||.+++++|++
T Consensus 33 ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~m~~f~lV~~ 110 (118)
T KOG3385|consen 33 ENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCWMAVFSLVAF 110 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH
Confidence 4445678889999999999999999999999999999999999999999999999876655 67788898877776655
Q ss_pred HHH
Q 045802 285 IVF 287 (301)
Q Consensus 285 lii 287 (301)
+++
T Consensus 111 fi~ 113 (118)
T KOG3385|consen 111 FIL 113 (118)
T ss_pred HHh
Confidence 433
No 18
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.0025 Score=50.51 Aligned_cols=81 Identities=15% Similarity=0.234 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVA---HANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVLII 285 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~---~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i~~~iiiil 285 (301)
.+..++..+.++-+++.+=-.=|-+-|+-|+.+++-.+ .+.+.-+++...|++ +|=.++-|++.|++++++|+++
T Consensus 30 k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkr--k~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 30 KLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKR--KMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777778888888877778889999998885543 333333333333321 3333334555555444444444
Q ss_pred HHHHHH
Q 045802 286 VFLFPL 291 (301)
Q Consensus 286 ii~~~i 291 (301)
+|++++
T Consensus 108 iiii~~ 113 (116)
T KOG0860|consen 108 VIIIYI 113 (116)
T ss_pred HHHHHH
Confidence 444433
No 19
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=96.84 E-value=0.015 Score=52.79 Aligned_cols=79 Identities=11% Similarity=0.215 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVLIIVFL 288 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i~~~iiiilii~ 288 (301)
++..+.+++.+=... ++..+.+-..+|+..+..++.....+......|+.- .+++.+||.|++++++++++|++
T Consensus 171 em~~La~~LK~~s~~---~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~---~~~~~~~~~~~~i~~v~~~Fi~m 244 (251)
T PF09753_consen 171 EMLSLARQLKENSLA---FSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEH---SSKSWGCWTWLMIFVVIIVFIMM 244 (251)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHH
Confidence 444454444444444 456699999999999999999999999999988653 33334466666555544444443
Q ss_pred HHHhhh
Q 045802 289 FPLIST 294 (301)
Q Consensus 289 ~~i~~~ 294 (301)
+ ++++
T Consensus 245 v-l~ir 249 (251)
T PF09753_consen 245 V-LFIR 249 (251)
T ss_pred H-HHhe
Confidence 3 4444
No 20
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.34 Score=42.57 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHH
Q 045802 215 KNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVLI 284 (301)
Q Consensus 215 ~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i~~~iiii 284 (301)
+-+.|--+|=.++-.=++.|.+.|.+--.-+-.+.+++.++.+-|..-.+.-- ..||.|.+|+++.+++
T Consensus 142 Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~-~nk~~~~aii~~l~~~ 210 (220)
T KOG1666|consen 142 RIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLI-RNKFTLTAIIALLVLA 210 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 33444445555555556889999998888888888888888888876544333 2367666655554443
No 21
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.48 E-value=0.041 Score=48.79 Aligned_cols=54 Identities=9% Similarity=0.238 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045802 210 VKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAK 263 (301)
Q Consensus 210 i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~ 263 (301)
+..|..-..++.+|..+=..+|..=...+...+.|++++..++++|.+-..+|+
T Consensus 194 ~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaR 247 (280)
T COG5074 194 MAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAAR 247 (280)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHH
Confidence 333333334444444454555655555566666777777777777776654433
No 22
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.19 E-value=0.97 Score=41.24 Aligned_cols=86 Identities=13% Similarity=0.201 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHH
Q 045802 200 ISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILL 279 (301)
Q Consensus 200 l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i~~ 279 (301)
..+|..=++.|.+|..-..+|..+..+=+.+|..=+..|+++..|+..|.....+|..+=+. .++.|.++.+++++
T Consensus 194 ~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrr----t~k~~~~~Llil~v 269 (283)
T COG5325 194 DEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRR----TKKCRFYLLLILLV 269 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhh----hccchhhHHHHHHH
Confidence 34566667888888888888888888888888888888888888888888888888877643 34455665666666
Q ss_pred HHHHHHHHHH
Q 045802 280 GIVLIIVFLF 289 (301)
Q Consensus 280 ~iiiilii~~ 289 (301)
+++++++++.
T Consensus 270 v~lfv~l~~k 279 (283)
T COG5325 270 VLLFVSLIKK 279 (283)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 23
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=95.39 E-value=4.5 Score=42.92 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHH-HHHHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAIL-LGIVLIIVF 287 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i~-~~iiiilii 287 (301)
-+..+.+.+..+..-+.+++.-+-.+ +...+..-...+..++......++++..| |+..+++++ ++++|+++.
T Consensus 358 ~v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~y----R~~~~lil~~~llLIv~~~ 431 (806)
T PF05478_consen 358 VVPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSY----RWIVGLILCCVLLLIVLCL 431 (806)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666 55666666677777777666666655544 333333322 334455677
Q ss_pred HHHHhhhhhh
Q 045802 288 LFPLISTLIV 297 (301)
Q Consensus 288 ~~~i~~~~~~ 297 (301)
++|++.|.|.
T Consensus 432 ~lGLl~G~~G 441 (806)
T PF05478_consen 432 LLGLLCGCCG 441 (806)
T ss_pred HHHHHHhhcc
Confidence 7888888887
No 24
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.17 E-value=2.7 Score=39.14 Aligned_cols=93 Identities=15% Similarity=0.278 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHH
Q 045802 197 MDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIA 276 (301)
Q Consensus 197 ~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~ 276 (301)
+...+++..=.+.|..|+.--.+++.|...=+.+|..=...+.+-..+|..+.+++.+|...-++|++ +..-++||+
T Consensus 202 q~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK---~k~i~ii~~ 278 (297)
T KOG0810|consen 202 QERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARK---WKIIIIIIL 278 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ceeeeehHH
Confidence 34556677777777777777777777777777788877777788888888888888888666555542 222333444
Q ss_pred HHHHHHHHHHHHHHHh
Q 045802 277 ILLGIVLIIVFLFPLI 292 (301)
Q Consensus 277 i~~~iiiilii~~~i~ 292 (301)
+++++|++++++.|++
T Consensus 279 iii~~v~v~~i~~~~~ 294 (297)
T KOG0810|consen 279 IIIIVVLVVVIVVPLV 294 (297)
T ss_pred HHHHHHHhhhhccccc
Confidence 4444444445555443
No 25
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.04 E-value=7.2 Score=35.84 Aligned_cols=86 Identities=9% Similarity=0.177 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHH
Q 045802 200 ISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILL 279 (301)
Q Consensus 200 l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i~~ 279 (301)
...+++=+.+|..+..-..+|..|..+=+.+|..=.+.|++-..||+.+..++.+|...=.++++. ..-.+|+++++
T Consensus 179 ~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~---~~~ll~v~~~v 255 (269)
T KOG0811|consen 179 EQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKK---KCILLLVGGPV 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---hhhhhHHHHHH
Confidence 345777788999999999999999999999999999999999999999999999999887655433 24455555555
Q ss_pred HHHHHHHHH
Q 045802 280 GIVLIIVFL 288 (301)
Q Consensus 280 ~iiiilii~ 288 (301)
++|++++++
T Consensus 256 ~lii~l~i~ 264 (269)
T KOG0811|consen 256 GLIIGLIIA 264 (269)
T ss_pred HHHHHHHHH
Confidence 555554443
No 26
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=91.48 E-value=4.7 Score=30.21 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=11.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHccch
Q 045802 243 SHVAHANSFVRRGTEQLEFAKESQKDS 269 (301)
Q Consensus 243 ~nv~~a~~~v~~~~~~l~kA~~~~~~~ 269 (301)
.+-+.-.+=+.++..=...|..+++++
T Consensus 28 ~Rge~L~~L~~kt~~L~~~a~~F~k~a 54 (89)
T PF00957_consen 28 ERGEKLEELEDKTEELSDNAKQFKKNA 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHHHHhHHHHHHH
Confidence 333333334444444444455555444
No 27
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.34 E-value=0.98 Score=41.51 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045802 205 ERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEF 261 (301)
Q Consensus 205 ~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~k 261 (301)
+-...+..|-.-+..|..|-.||+.-|+.|.+.||+|+++++.+...|..++..+++
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 345578888889999999999999999999999999999999999999998887754
No 28
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=89.16 E-value=8.1 Score=29.28 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=27.1
Q ss_pred HHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHH
Q 045802 231 VEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVL 283 (301)
Q Consensus 231 V~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i~~~iii 283 (301)
+.+|-+.|....+.......-+..+.+-+.+..+..+.-|.++++.+++++.+
T Consensus 31 L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~ 83 (92)
T PF03908_consen 31 LEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLV 83 (92)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455555555555555555666777777655544444444433333333333
No 29
>PF14992 TMCO5: TMCO5 family
Probab=85.66 E-value=30 Score=31.97 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHH
Q 045802 198 DTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVR 253 (301)
Q Consensus 198 ~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~ 253 (301)
.....+....++|.+++.+...++++=.|=+.-+..=.+.|.+||...+...-+.+
T Consensus 120 ql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~e 175 (280)
T PF14992_consen 120 QLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKE 175 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788999999999999999999998888888888999876655544443
No 30
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=83.79 E-value=27 Score=31.48 Aligned_cols=72 Identities=11% Similarity=0.194 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHH
Q 045802 200 ISEIQERHDAVK-EIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTC 274 (301)
Q Consensus 200 l~~i~~R~~ei~-~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~ 274 (301)
+..+-.+|+.++ +|..+|..|..-.++=+... +..|..=..-++.+...++.....|..+...-+..++..|
T Consensus 154 ~e~~l~~~~~~QE~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~ 226 (251)
T PF09753_consen 154 LEKILQHHRNLQEDLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSW 226 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444555554 56666666666666554433 3444444455777888888888888888877776664444
No 31
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.78 E-value=3 Score=36.39 Aligned_cols=86 Identities=13% Similarity=0.212 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccch----hhHHHHHHHHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDS----RKWTCIAILLGIVLI 284 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~----rk~~~~~i~~~iiii 284 (301)
.+.++...+.|+..++.+==.-|-+-||-| |-=|+.|+.-..++...-+.+++..++. -|..|++++++++++
T Consensus 126 ~lskvkaqv~evk~vM~eNIekvldRGeki---ELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~i 202 (217)
T KOG0859|consen 126 KLAKVKAQVTEVKGVMMENIEKVLDRGEKI---ELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLI 202 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCeE---EeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHH
Confidence 344555666666666555545555555533 3334445444444444444444444332 134445555555555
Q ss_pred HHHHHHHhhhhhh
Q 045802 285 IVFLFPLISTLIV 297 (301)
Q Consensus 285 lii~~~i~~~~~~ 297 (301)
.+|+.+++.+|.-
T Consensus 203 yiiv~~~CgG~~~ 215 (217)
T KOG0859|consen 203 YIIVARRCGGFTC 215 (217)
T ss_pred HHHHHHhccCCCC
Confidence 6677767766643
No 32
>PHA02844 putative transmembrane protein; Provisional
Probab=83.36 E-value=1.9 Score=31.43 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 045802 269 SRKWTCIAILLGIVLIIVFLFPLISTLIVN 298 (301)
Q Consensus 269 ~rk~~~~~i~~~iiiilii~~~i~~~~~~~ 298 (301)
+..|+.++++++.+++++++.-+.+|..++
T Consensus 45 ~~~~~~~ii~i~~v~~~~~~~flYLK~~~r 74 (75)
T PHA02844 45 SSSTKIWILTIIFVVFATFLTFLYLKAVPR 74 (75)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 345655555555555445555455555443
No 33
>PHA02650 hypothetical protein; Provisional
Probab=80.38 E-value=3.1 Score=30.69 Aligned_cols=31 Identities=6% Similarity=-0.028 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 045802 269 SRKWTCIAILLGIVLIIVFLFPLISTLIVNS 299 (301)
Q Consensus 269 ~rk~~~~~i~~~iiiilii~~~i~~~~~~~~ 299 (301)
...|+.++++++++++++++.-+.+|..+++
T Consensus 46 ~~~~~~~ii~i~~v~i~~l~~flYLK~~~r~ 76 (81)
T PHA02650 46 WFNGQNFIFLIFSLIIVALFSFFVFKGYTRN 76 (81)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445555555555555555554566655443
No 34
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=78.67 E-value=49 Score=29.58 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHH
Q 045802 244 HVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVLIIVFL 288 (301)
Q Consensus 244 nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i~~~iiiilii~ 288 (301)
++..+.+..++...++++|.+.-+++-+++|..+..++.|.++++
T Consensus 121 ei~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~LF~ 165 (230)
T PF03904_consen 121 EIKKVREENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFMLFA 165 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344555566666677777776666666777776655544443333
No 35
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=77.90 E-value=0.48 Score=39.41 Aligned_cols=11 Identities=27% Similarity=0.736 Sum_probs=5.2
Q ss_pred HHHHHHHHHHh
Q 045802 282 VLIIVFLFPLI 292 (301)
Q Consensus 282 iiilii~~~i~ 292 (301)
++++||++||+
T Consensus 145 ~~ilVivVpi~ 155 (159)
T PF06789_consen 145 AVILVIVVPIC 155 (159)
T ss_pred HheEEEEEEEE
Confidence 34445555443
No 36
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=77.32 E-value=53 Score=29.31 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLE 260 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~ 260 (301)
++..+.++..+-.--|++. +.+-...+-.-+.-++...........-++
T Consensus 159 sll~LArslKtnalAfqsa---lkeDnQvl~~~~k~~D~N~~~L~~~Serve 207 (244)
T KOG2678|consen 159 SLLKLARSLKTNALAFQSA---LKEDNQVLGAAEKGIDVNSQGLMDVSERVE 207 (244)
T ss_pred HHHHHHHHHHHhHHHHHHH---HHhhHHHHHHHHHHHhHHHHHHHhhhHHHH
Confidence 4445555555444444433 444455555555555555555554444454
No 37
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=76.64 E-value=5.7 Score=29.53 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=12.3
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 045802 236 HQLNDIESHVAHANSFVRR 254 (301)
Q Consensus 236 e~id~Ie~nv~~a~~~v~~ 254 (301)
..++.||.++...-.....
T Consensus 9 r~L~eiEr~L~~~DP~fa~ 27 (82)
T PF11239_consen 9 RRLEEIERQLRADDPRFAA 27 (82)
T ss_pred HHHHHHHHHHHhcCcHHHH
Confidence 3788888887655444433
No 38
>PRK14762 membrane protein; Provisional
Probab=76.40 E-value=4.3 Score=23.20 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 045802 273 TCIAILLGIVLIIVFLFPLI 292 (301)
Q Consensus 273 ~~~~i~~~iiiilii~~~i~ 292 (301)
+.|++.++.++.++++.|++
T Consensus 4 ~lw~i~iifligllvvtgvf 23 (27)
T PRK14762 4 ILWAVLIIFLIGLLVVTGVF 23 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666654
No 39
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=75.63 E-value=91 Score=33.08 Aligned_cols=69 Identities=13% Similarity=0.214 Sum_probs=36.3
Q ss_pred HHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccch-----h----hHH--HHHHHHHHHHHHHHHHHHhhhhhh
Q 045802 229 ALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDS-----R----KWT--CIAILLGIVLIIVFLFPLISTLIV 297 (301)
Q Consensus 229 ~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~-----r----k~~--~~~i~~~iiiilii~~~i~~~~~~ 297 (301)
..|.++|+.+|..-.++..-..+..-+...++ ...+.+++ | +|+ |+++.+++.++++.++|++.|.|.
T Consensus 379 r~l~q~~~~l~~~a~~l~~ql~~~~~s~~~~k-~~~~s~~~~~~~~ry~~y~wv~~LVicsl~llvll~~~~Gll~Gi~G 457 (865)
T KOG4331|consen 379 RDLPQIPGDLDGLAEKLPSQLANSVFSGVTLK-VEASSLRALQKHLRYPLYRWVVSLVICSLQLLVLLIGLFGLLCGICG 457 (865)
T ss_pred HHHHhCCchHHHHHhhccHHHHHHHHHHHHHH-HHHhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34467899999888887762222222222221 11222211 1 232 222333344566778888899887
Q ss_pred c
Q 045802 298 N 298 (301)
Q Consensus 298 ~ 298 (301)
.
T Consensus 458 ~ 458 (865)
T KOG4331|consen 458 R 458 (865)
T ss_pred C
Confidence 6
No 40
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=73.25 E-value=94 Score=30.24 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=31.0
Q ss_pred cccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 22 VIRKGTENLDKFFDDVENVKEDMKVVEKLYKRLQESN 58 (301)
Q Consensus 22 ~~~e~~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~ 58 (301)
...+.+..+..++.++.+++.....+...++.|+...
T Consensus 206 ~~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~ 242 (395)
T PF10267_consen 206 VSSQQNLGLQKILEELREIKESQSRLEESIEKLKEQY 242 (395)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577788999999999999999999999998743
No 41
>PHA02819 hypothetical protein; Provisional
Probab=71.40 E-value=7.2 Score=28.18 Aligned_cols=25 Identities=8% Similarity=0.072 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q 045802 270 RKWTCIAILLGIVLIIVFLFPLIST 294 (301)
Q Consensus 270 rk~~~~~i~~~iiiilii~~~i~~~ 294 (301)
..|+.++++++.+++++++.-+.+|
T Consensus 44 ~~~~~~ii~l~~~~~~~~~~flYLK 68 (71)
T PHA02819 44 FLRYYLIIGLVTIVFVIIFIIFYLK 68 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455455444444444444433443
No 42
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.32 E-value=38 Score=29.66 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=9.0
Q ss_pred HhhHHHHHHHHhHH
Q 045802 233 AQGHQLNDIESHVA 246 (301)
Q Consensus 233 ~Qge~id~Ie~nv~ 246 (301)
--|-|+++||.=++
T Consensus 137 vk~vM~eNIekvld 150 (217)
T KOG0859|consen 137 VKGVMMENIEKVLD 150 (217)
T ss_pred HHHHHHHHHHHHHh
Confidence 35778888875443
No 43
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=69.06 E-value=1e+02 Score=28.81 Aligned_cols=33 Identities=12% Similarity=0.060 Sum_probs=20.4
Q ss_pred ccccccccCCccccCCCccHHHHHHHHHHHHHH
Q 045802 11 RYSNVDLEAGGVIRKGTENLDKFFDDVENVKED 43 (301)
Q Consensus 11 ~~~~~~~~~~~~~~e~~~~~~~f~~~v~~I~~~ 43 (301)
+++++|++|...+-.....-.+|-.+|+.+-..
T Consensus 181 ~~a~~d~N~~~~vl~s~tDa~eW~lEvERVlPQ 213 (384)
T KOG0972|consen 181 GLATEDKNPLQSVLQSNTDAIEWKLEVERVLPQ 213 (384)
T ss_pred cccccccChHHHHHhhcchHHHHHHHHHHhhhh
Confidence 456667777655555555566677776665443
No 44
>PHA02975 hypothetical protein; Provisional
Probab=68.24 E-value=8.7 Score=27.61 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=13.2
Q ss_pred HccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 045802 265 SQKDSRKWTCIAILLGIVLIIVFLFPLIS 293 (301)
Q Consensus 265 ~~~~~rk~~~~~i~~~iiiilii~~~i~~ 293 (301)
+.+++..|++++++++.+++++++.-+.+
T Consensus 37 ~~~~~~~~~~~ii~i~~v~~~~~~~flYL 65 (69)
T PHA02975 37 PKKKSSLSIILIIFIIFITCIAVFTFLYL 65 (69)
T ss_pred CCcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555444444444433333
No 45
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=67.63 E-value=8.8 Score=28.54 Aligned_cols=11 Identities=27% Similarity=0.226 Sum_probs=3.3
Q ss_pred HHHHHHhhhhh
Q 045802 286 VFLFPLISTLI 296 (301)
Q Consensus 286 ii~~~i~~~~~ 296 (301)
+|+-.++++.+
T Consensus 49 vivg~LLMGLh 59 (93)
T PF08999_consen 49 VIVGALLMGLH 59 (93)
T ss_dssp HHHHHHHH---
T ss_pred HHHHHHHHHhh
Confidence 33333444443
No 46
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=66.92 E-value=3.5 Score=30.77 Aligned_cols=31 Identities=35% Similarity=0.712 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHH
Q 045802 254 RGTEQLEFAKESQKDSRKWTCIAILLGIVLI 284 (301)
Q Consensus 254 ~~~~~l~kA~~~~~~~rk~~~~~i~~~iiii 284 (301)
....+.+.|.++.+++|+|..+-+++.++++
T Consensus 48 ~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~~~~ 78 (82)
T PF04505_consen 48 YAAGDYEGARRASRKAKKWSIIAIIIGIVII 78 (82)
T ss_pred HHCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3445677888888888888666555554443
No 47
>PHA03054 IMV membrane protein; Provisional
Probab=65.59 E-value=11 Score=27.28 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 045802 270 RKWTCIAILLGIVLIIVFLF 289 (301)
Q Consensus 270 rk~~~~~i~~~iiiilii~~ 289 (301)
..|+.++++++.+++++++.
T Consensus 46 ~~~~~~ii~l~~v~~~~l~~ 65 (72)
T PHA03054 46 WGWYWLIIIFFIVLILLLLI 65 (72)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 34554444444444434433
No 48
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=65.30 E-value=42 Score=23.34 Aligned_cols=45 Identities=18% Similarity=0.412 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVR 253 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~ 253 (301)
+++.++..+..|-..|.....=-..+++.++++|.+++.-..++-
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv 46 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMV 46 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 467788888899999999999999999999999999988776654
No 49
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=64.29 E-value=1.4e+02 Score=28.85 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 045802 206 RHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESH 244 (301)
Q Consensus 206 R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~n 244 (301)
|++-+.+.-.+..|||+ ++++.|-+++..|=.++.|.
T Consensus 307 R~erLEEqLNdlteLqQ--nEi~nLKqElasmeervaYQ 343 (455)
T KOG3850|consen 307 RYERLEEQLNDLTELQQ--NEIANLKQELASMEERVAYQ 343 (455)
T ss_pred HHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445544 68889998998888888765
No 50
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=63.72 E-value=52 Score=23.60 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=22.0
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHH
Q 045802 234 QGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLG 280 (301)
Q Consensus 234 Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i~~~ 280 (301)
..+-++.+|.+.............+|.+ =+.+.||.+-+++..
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~----I~~n~kW~~r~iiGa 60 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEK----IKSNTKWIWRTIIGA 60 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444555555555555555555555543 234557765554433
No 51
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.37 E-value=1.1e+02 Score=27.16 Aligned_cols=25 Identities=4% Similarity=0.086 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 045802 78 DSDVEQVLKRVKVIKGKLEALEKSN 102 (301)
Q Consensus 78 ~~l~~~i~~~~~~i~~~L~~l~~~~ 102 (301)
..+.+++.+...++...+..++...
T Consensus 32 ~~v~~~i~~sI~~~~s~~~rl~~~~ 56 (213)
T KOG3251|consen 32 SAVENSIQRSIDQYASRCQRLDVLV 56 (213)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhHh
Confidence 4455666666677777777776543
No 52
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=62.23 E-value=15 Score=25.58 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhhhhhh
Q 045802 281 IVLIIVFLFPLISTLIV 297 (301)
Q Consensus 281 iiiilii~~~i~~~~~~ 297 (301)
+++++.+.++++++...
T Consensus 15 l~vl~~~~Ftl~IRri~ 31 (58)
T PF13314_consen 15 LIVLFGASFTLFIRRIL 31 (58)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444445555443
No 53
>PRK04325 hypothetical protein; Provisional
Probab=60.19 E-value=64 Score=23.50 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Q 045802 210 VKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRR 254 (301)
Q Consensus 210 i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 254 (301)
|..||..+.-.-+...+|+..|.+|...|+.....+..-.+.+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888999999999888777766655544
No 54
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=59.84 E-value=14 Score=36.99 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=14.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHccchh
Q 045802 241 IESHVAHANSFVRRGTEQLEFAKESQKDSR 270 (301)
Q Consensus 241 Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~r 270 (301)
|..++.++...++++...|+++.+.=.+..
T Consensus 436 IS~eL~~vn~sL~~A~~~L~~Sn~iL~~v~ 465 (490)
T PF00523_consen 436 ISSELGQVNNSLNNAKDLLDKSNQILDSVN 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444444444444444444444433
No 55
>PRK00523 hypothetical protein; Provisional
Probab=59.82 E-value=12 Score=27.23 Aligned_cols=10 Identities=10% Similarity=0.036 Sum_probs=5.2
Q ss_pred HHHHHhhhhh
Q 045802 287 FLFPLISTLI 296 (301)
Q Consensus 287 i~~~i~~~~~ 296 (301)
+++|++++|+
T Consensus 15 li~G~~~Gff 24 (72)
T PRK00523 15 LIVGGIIGYF 24 (72)
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 56
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.41 E-value=54 Score=28.74 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 045802 272 WTCIAILLGIVLIIVFLFPLISTLIVNS 299 (301)
Q Consensus 272 ~~~~~i~~~iiiilii~~~i~~~~~~~~ 299 (301)
||-++.++++|++ -++=.+++++.|..
T Consensus 177 ~~Sl~e~~~vv~i-Si~Qv~ilk~fFt~ 203 (209)
T KOG1693|consen 177 WWSLLEIIAVVVI-SIAQVFILKFFFTD 203 (209)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhc
Confidence 4444433333333 33333566766654
No 57
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=58.65 E-value=65 Score=23.03 Aligned_cols=48 Identities=15% Similarity=0.206 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGT 256 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~ 256 (301)
.|..||..+.-.-+...+|+..|..|...||..+..+..-...+....
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777778888888888888888888888888888777766665543
No 58
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=58.48 E-value=68 Score=23.26 Aligned_cols=61 Identities=10% Similarity=0.232 Sum_probs=33.8
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHH
Q 045802 27 TENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRV 88 (301)
Q Consensus 27 ~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~ 88 (301)
...++..+.....+...|......++.|...-... ....+.+...+..+++.+...-..+.
T Consensus 33 ~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L-~~~~~~~~~~i~~~~~~l~~~w~~l~ 93 (105)
T PF00435_consen 33 LEELEEQLKKHKELQEEIESRQERLESLNEQAQQL-IDSGPEDSDEIQEKLEELNQRWEALC 93 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777777777777776665544 23334444444444444443333333
No 59
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.20 E-value=13 Score=26.97 Aligned_cols=17 Identities=18% Similarity=0.567 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhhhhh
Q 045802 281 IVLIIVFLFPLISTLIV 297 (301)
Q Consensus 281 iiiilii~~~i~~~~~~ 297 (301)
+++++.+++|++.++|.
T Consensus 8 l~ivl~ll~G~~~G~fi 24 (71)
T COG3763 8 LLIVLALLAGLIGGFFI 24 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445566677777664
No 60
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.62 E-value=85 Score=28.28 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=14.4
Q ss_pred HHHHhhHHHHHHHHhHHHHH
Q 045802 230 LVEAQGHQLNDIESHVAHAN 249 (301)
Q Consensus 230 lV~~Qge~id~Ie~nv~~a~ 249 (301)
|+.+|.+.+|.|+..+....
T Consensus 146 m~~eQDe~Ld~ls~ti~rlk 165 (235)
T KOG3202|consen 146 MLQEQDEGLDGLSATVQRLK 165 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 37888888888887655433
No 61
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=56.26 E-value=35 Score=23.89 Aligned_cols=14 Identities=7% Similarity=0.188 Sum_probs=6.7
Q ss_pred HHHHHHHHHHccch
Q 045802 256 TEQLEFAKESQKDS 269 (301)
Q Consensus 256 ~~~l~kA~~~~~~~ 269 (301)
.....+..+..++.
T Consensus 25 ~~~~~k~qk~~~~~ 38 (59)
T PF09889_consen 25 REEYRKRQKRMRKT 38 (59)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555555533
No 62
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=55.99 E-value=23 Score=23.80 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=11.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhh
Q 045802 268 DSRKWTCIAILLGIVLIIVFLFPLIST 294 (301)
Q Consensus 268 ~~rk~~~~~i~~~iiiilii~~~i~~~ 294 (301)
+++.-+..+++++++++++++.|++..
T Consensus 14 ~nk~a~~gl~il~~~vl~ai~~p~~~p 40 (56)
T PF12911_consen 14 RNKLAVIGLIILLILVLLAIFAPFISP 40 (56)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 343333333344444444555555543
No 63
>PRK00295 hypothetical protein; Provisional
Probab=55.86 E-value=73 Score=22.79 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Q 045802 210 VKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRR 254 (301)
Q Consensus 210 i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 254 (301)
|..||..+.-.-+...+|+..|..|...||.....+..-...+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888999999998888777766555544
No 64
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.81 E-value=1.8e+02 Score=27.18 Aligned_cols=92 Identities=11% Similarity=0.217 Sum_probs=74.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHH
Q 045802 194 GQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWT 273 (301)
Q Consensus 194 ~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~ 273 (301)
..+...-.++..=.+.|..|..-..+|..|..|=+++|.-=+-.|+++...++.|...+.+|... .+.-++.+-.+
T Consensus 211 ~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~y----Qk~~~k~~~i~ 286 (305)
T KOG0809|consen 211 EVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERY----QKRNKKMKVIL 286 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHH----HhcCCceEehH
Confidence 34556667888889999999999999999999999999999999999999999999999998765 45566666555
Q ss_pred HHHHHHHHHHHHHHHH
Q 045802 274 CIAILLGIVLIIVFLF 289 (301)
Q Consensus 274 ~~~i~~~iiiilii~~ 289 (301)
.++++++++++++|+.
T Consensus 287 ~L~l~ii~llvllilk 302 (305)
T KOG0809|consen 287 MLTLLIIALLVLLILK 302 (305)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5555555555556655
No 65
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.39 E-value=1.5e+02 Score=26.15 Aligned_cols=40 Identities=10% Similarity=0.097 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045802 222 QVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEF 261 (301)
Q Consensus 222 ~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~k 261 (301)
+.-.+|..-+.+-...+..++..-.........+..++..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555665555555555555555543
No 66
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=54.94 E-value=69 Score=22.23 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAK 263 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~ 263 (301)
-|..-...+.+..++-.+...-+..|++.|.++...+..+..++..+..-|..-.
T Consensus 9 ~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 9 SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444455566667777777788899999999999999999999999998887644
No 67
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=51.39 E-value=2.9e+02 Score=28.43 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 045802 206 RHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIES 243 (301)
Q Consensus 206 R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~ 243 (301)
+....++..+.+..||+.|.+|-..|.+=|...-.|-+
T Consensus 545 kDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEird 582 (594)
T PF05667_consen 545 KDEAARKAYKLLASLHENCSQLIETVEETGTISREIRD 582 (594)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66688899999999999999999999999988776653
No 68
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.72 E-value=1.4e+02 Score=26.44 Aligned_cols=35 Identities=17% Similarity=0.396 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIES 243 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~ 243 (301)
-+.++.....+++.++..==..|-.-|+.++..+.
T Consensus 135 n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~ 169 (216)
T KOG0862|consen 135 NLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSS 169 (216)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhh
Confidence 44455555555555555554555566666665553
No 69
>PRK01844 hypothetical protein; Provisional
Probab=50.63 E-value=20 Score=26.08 Aligned_cols=11 Identities=0% Similarity=0.027 Sum_probs=4.8
Q ss_pred HHHHHHhhhhh
Q 045802 286 VFLFPLISTLI 296 (301)
Q Consensus 286 ii~~~i~~~~~ 296 (301)
.+++|++++|+
T Consensus 13 ~li~G~~~Gff 23 (72)
T PRK01844 13 ALVAGVALGFF 23 (72)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 70
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=50.38 E-value=13 Score=37.11 Aligned_cols=23 Identities=9% Similarity=0.338 Sum_probs=11.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 045802 239 NDIESHVAHANSFVRRGTEQLEF 261 (301)
Q Consensus 239 d~Ie~nv~~a~~~v~~~~~~l~k 261 (301)
+++...+++|+++++++++-|.+
T Consensus 441 ~~vn~sL~~A~~~L~~Sn~iL~~ 463 (490)
T PF00523_consen 441 GQVNNSLNNAKDLLDKSNQILDS 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555543
No 71
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=49.81 E-value=82 Score=24.50 Aligned_cols=46 Identities=15% Similarity=0.011 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHccch-hhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 045802 251 FVRRGTEQLEFAKESQKDS-RKWTCIAILLGIVLIIVFLFPLISTLI 296 (301)
Q Consensus 251 ~v~~~~~~l~kA~~~~~~~-rk~~~~~i~~~iiiilii~~~i~~~~~ 296 (301)
.|........+|.+...++ -+-+-.+-.+.+-+++.+++|++++.|
T Consensus 19 ~v~~~~~R~~~a~r~~~~~~~~~l~~~g~IG~~~v~pil~G~~lG~W 65 (100)
T TIGR02230 19 RVGDKELRKLRARKNATRSIWEGLGMFGLIGWSVAIPTLLGVAVGIW 65 (100)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555533332 122333334444455666777777766
No 72
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=49.44 E-value=56 Score=22.89 Aligned_cols=13 Identities=31% Similarity=0.189 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHc
Q 045802 254 RGTEQLEFAKESQ 266 (301)
Q Consensus 254 ~~~~~l~kA~~~~ 266 (301)
.|..-|..--++|
T Consensus 10 TA~~FL~RvGr~q 22 (60)
T PF06072_consen 10 TATEFLRRVGRQQ 22 (60)
T ss_pred cHHHHHHHHhHHH
Confidence 3444444444444
No 73
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=48.58 E-value=62 Score=28.38 Aligned_cols=27 Identities=11% Similarity=0.354 Sum_probs=4.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 045802 270 RKWTCIAILLGIVLIIVFLFPLISTLI 296 (301)
Q Consensus 270 rk~~~~~i~~~iiiilii~~~i~~~~~ 296 (301)
.+|..++-++++||+++|++.++...+
T Consensus 151 t~W~~~Iki~i~iv~~iI~lri~~~i~ 177 (204)
T PF00517_consen 151 TKWLWYIKIFIMIVIGIIGLRILMCIL 177 (204)
T ss_dssp HHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356555545554555555554544433
No 74
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=48.45 E-value=22 Score=34.25 Aligned_cols=14 Identities=0% Similarity=0.263 Sum_probs=7.7
Q ss_pred HHHHHHHhhhhhhc
Q 045802 285 IVFLFPLISTLIVN 298 (301)
Q Consensus 285 lii~~~i~~~~~~~ 298 (301)
+++++|.+++|.+-
T Consensus 312 ~lL~ig~~~gFv~A 325 (387)
T PF12751_consen 312 LLLVIGFAIGFVFA 325 (387)
T ss_pred HHHHHHHHHHhhhh
Confidence 34555566666553
No 75
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=48.39 E-value=1.2e+02 Score=23.00 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 045802 32 KFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAA 104 (301)
Q Consensus 32 ~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~~~~ 104 (301)
.||.-.+++...|..++........+. .... ....+..+..++...+..+...|.+|++.+.-
T Consensus 2 PF~~v~~ev~~sl~~l~~~~~~~~~~~-------~~~~---~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 2 PFFVVKDEVQSSLDRLESLYRRWQRLR-------SDTS---SSEELKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-------THCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhc-------ccCC---CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888777766665554432 2111 12345566667777777788888888766543
No 76
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=48.18 E-value=1.1e+02 Score=22.54 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHH
Q 045802 39 NVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVK 89 (301)
Q Consensus 39 ~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~ 89 (301)
.|+..|..+..+++.|+...+.... +..+-.++..+++.+...+..+.+
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l~~--~~~~v~~l~~klDa~~~~l~~l~~ 56 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDLES--NLPDVTELNKKLDAQSAQLTTLNT 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777766554322 222344566777776655444443
No 77
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=47.54 E-value=23 Score=25.92 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 045802 273 TCIAILLGIVLI 284 (301)
Q Consensus 273 ~~~~i~~~iiii 284 (301)
+++.++++++++
T Consensus 2 ii~~~~~g~~~l 13 (75)
T PF14575_consen 2 IIASIIVGVLLL 13 (75)
T ss_dssp HHHHHHHHHHHH
T ss_pred EEehHHHHHHHH
Confidence 344444444333
No 78
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=46.65 E-value=1.2e+02 Score=22.71 Aligned_cols=48 Identities=10% Similarity=-0.015 Sum_probs=32.6
Q ss_pred ccccccccCCccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 11 RYSNVDLEAGGVIRKGTENLDKFFDDVENVKEDMKVVEKLYKRLQESN 58 (301)
Q Consensus 11 ~~~~~~~~~~~~~~e~~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~ 58 (301)
++.++|++...+.+.......--..+...|...|..|+..++.|....
T Consensus 2 s~~ngd~~~~~e~~~~~~~~e~~~~E~~~ins~LD~Lns~LD~LE~rn 49 (83)
T PF03670_consen 2 SGPNGDDGMSVEDGGEEEDDEFDEEEYAAINSMLDQLNSCLDHLEQRN 49 (83)
T ss_pred CCCCCCCCCCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788887766655544433345677788888888888887777554
No 79
>PHA02692 hypothetical protein; Provisional
Probab=46.47 E-value=33 Score=24.80 Aligned_cols=8 Identities=25% Similarity=0.916 Sum_probs=3.6
Q ss_pred hHHHHHHH
Q 045802 271 KWTCIAIL 278 (301)
Q Consensus 271 k~~~~~i~ 278 (301)
.|+.++++
T Consensus 44 ~~~~~ii~ 51 (70)
T PHA02692 44 PWTTVFLI 51 (70)
T ss_pred chHHHHHH
Confidence 44444444
No 80
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=46.25 E-value=45 Score=24.77 Aligned_cols=94 Identities=12% Similarity=0.099 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCCCCCCCcHHHHHHH
Q 045802 43 DMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKVPGCGPGSSVDRTRT 122 (301)
Q Consensus 43 ~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~~~~~k~~~~~~~~s~~~rir~ 122 (301)
.+..|...+..|+....+...+....-... ... .....++..++..|+..+..+...+..... ............
T Consensus 8 ~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~-~~d-~~~~~el~~l~~~i~~~~~~~~~~lk~l~~---~~~~~~~~~~~~ 82 (103)
T PF00804_consen 8 EVQEIREDIDKIKEKLNELRKLHKKILSSP-DQD-SELKRELDELTDEIKQLFQKIKKRLKQLSK---DNEDSEGEEPSS 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCTT--S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-Ccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhcccCCCc
Confidence 445666666666655554433321100000 011 346667777777777777777766654321 000000112233
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045802 123 SVVAGLGKKLKDTMDDFQH 141 (301)
Q Consensus 123 ~~~~~L~~~f~~~~~~f~~ 141 (301)
+........+..+..+|+.
T Consensus 83 ~~~ri~~nq~~~L~~kf~~ 101 (103)
T PF00804_consen 83 NEVRIRKNQVQALSKKFQE 101 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666654
No 81
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=46.01 E-value=48 Score=21.87 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045802 212 EIEKNLLELHQVFLDMFALVEAQGHQL 238 (301)
Q Consensus 212 ~ie~~i~eL~~lf~dl~~lV~~Qge~i 238 (301)
.|-..+.++++++.+|-.++.+|-.-+
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~kE~ 31 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIKET 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788889999999988888875433
No 82
>PF12669 P12: Virus attachment protein p12 family
Probab=44.00 E-value=16 Score=25.36 Aligned_cols=6 Identities=17% Similarity=0.357 Sum_probs=2.8
Q ss_pred hhhhhc
Q 045802 293 STLIVN 298 (301)
Q Consensus 293 ~~~~~~ 298 (301)
.++|++
T Consensus 18 r~~~k~ 23 (58)
T PF12669_consen 18 RKFIKD 23 (58)
T ss_pred HHHHHH
Confidence 455543
No 83
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=43.77 E-value=1.1e+02 Score=21.40 Aligned_cols=8 Identities=0% Similarity=-0.396 Sum_probs=3.4
Q ss_pred HHHHHHhh
Q 045802 286 VFLFPLIS 293 (301)
Q Consensus 286 ii~~~i~~ 293 (301)
..++|.++
T Consensus 49 S~~lG~~~ 56 (60)
T PF06072_consen 49 SGGLGALV 56 (60)
T ss_pred HHHHHHHh
Confidence 34444444
No 84
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=43.16 E-value=44 Score=24.25 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=8.7
Q ss_pred HHHccchhhHHHHHHH
Q 045802 263 KESQKDSRKWTCIAIL 278 (301)
Q Consensus 263 ~~~~~~~rk~~~~~i~ 278 (301)
.+|-+++|+--.++++
T Consensus 7 k~Y~rrSr~~efLF~i 22 (72)
T PF13198_consen 7 KEYPRRSRKTEFLFFI 22 (72)
T ss_pred HHccchhHHHHHHHHH
Confidence 3566777764433333
No 85
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=42.89 E-value=71 Score=27.10 Aligned_cols=29 Identities=28% Similarity=0.550 Sum_probs=15.1
Q ss_pred HHHHHHHHHHccchhhH-HHHHHHHHHHHH
Q 045802 256 TEQLEFAKESQKDSRKW-TCIAILLGIVLI 284 (301)
Q Consensus 256 ~~~l~kA~~~~~~~rk~-~~~~i~~~iiii 284 (301)
..++..|...++++.|+ .++.+++.+.++
T Consensus 137 ~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lv 166 (170)
T TIGR02833 137 ERQLTEAEDEQKKNEKMYRYLGVLVGLMIV 166 (170)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34555566666666554 444455444433
No 86
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=42.83 E-value=93 Score=30.32 Aligned_cols=8 Identities=25% Similarity=0.156 Sum_probs=4.0
Q ss_pred hhhhhhcC
Q 045802 292 ISTLIVNS 299 (301)
Q Consensus 292 ~~~~~~~~ 299 (301)
++++.|.|
T Consensus 204 l~glar~S 211 (406)
T PF04906_consen 204 LLGLARQS 211 (406)
T ss_pred HHHHHhcC
Confidence 44555554
No 87
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=42.83 E-value=71 Score=27.13 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHH-HHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhh-HHHHHHHHHHHHH
Q 045802 217 LLELHQVFLDMFAL-VEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRK-WTCIAILLGIVLI 284 (301)
Q Consensus 217 i~eL~~lf~dl~~l-V~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk-~~~~~i~~~iiii 284 (301)
...|.++..-|+.. ++.|...|+-.. ++=..++.+|...++++.| |.++.+++.+.++
T Consensus 108 ~eiL~~lg~~LG~~D~e~Q~k~i~L~~----------e~L~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lv 167 (171)
T PRK08307 108 IEILLQFGKTLGQSDREGQQKHIRLAL----------EHLEREEEEAEEEQKKNEKMYKYLGFLAGLLIV 167 (171)
T ss_pred HHHHHHHHHHHCcCcHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 34445555555544 344444433322 2333455566666666655 4455555544443
No 88
>COG4640 Predicted membrane protein [Function unknown]
Probab=42.69 E-value=29 Score=33.54 Aligned_cols=14 Identities=14% Similarity=0.180 Sum_probs=9.3
Q ss_pred HHHHHhhhhhhcCC
Q 045802 287 FLFPLISTLIVNSP 300 (301)
Q Consensus 287 i~~~i~~~~~~~~~ 300 (301)
|++.++++-.++||
T Consensus 65 ii~~~~fgk~fssp 78 (465)
T COG4640 65 IIILFFFGKNFSSP 78 (465)
T ss_pred HHHHHHHhhccCCH
Confidence 33336777788887
No 89
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=42.55 E-value=26 Score=33.70 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 045802 270 RKWTCIAILLGIVLIIVFLFPLISTLI 296 (301)
Q Consensus 270 rk~~~~~i~~~iiiilii~~~i~~~~~ 296 (301)
|...|+++.+++++++..++|+++...
T Consensus 301 r~~~c~~~~i~~lL~ig~~~gFv~Att 327 (387)
T PF12751_consen 301 RFASCIYLSILLLLVIGFAIGFVFATT 327 (387)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 344666666666666677777776543
No 90
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.25 E-value=93 Score=27.60 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=37.3
Q ss_pred HHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHccchhhHHHH--HHHHHHHHHHHHHHHHhhhhh
Q 045802 236 HQLNDIE---SHVAHANSFVRRGTEQLEFAKESQKDSRKWTCI--AILLGIVLIIVFLFPLISTLI 296 (301)
Q Consensus 236 e~id~Ie---~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~--~i~~~iiiilii~~~i~~~~~ 296 (301)
+++.+.- ..++.|.+-......+|.++.+.=+...++.|- +++.++|+++++++++++-+.
T Consensus 153 ~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~k 218 (220)
T KOG1666|consen 153 EILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSK 218 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444443 456777777777888888887777776544443 344445555666666655444
No 91
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=42.20 E-value=74 Score=26.86 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=12.1
Q ss_pred HHHHHHHHHccchhh-HHHHHHHHHHHH
Q 045802 257 EQLEFAKESQKDSRK-WTCIAILLGIVL 283 (301)
Q Consensus 257 ~~l~kA~~~~~~~rk-~~~~~i~~~iii 283 (301)
.++..|.+-.+++.| |.++.+++.+.+
T Consensus 138 ~~~~~a~~~~~~~~Klyr~LGvl~G~~l 165 (170)
T PF09548_consen 138 QQLEEAREEAKKKGKLYRSLGVLGGLFL 165 (170)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344444444444444 444444444333
No 92
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=41.79 E-value=3.4e+02 Score=29.27 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Q 045802 219 ELHQVFLDMFALVEAQGHQLNDI 241 (301)
Q Consensus 219 eL~~lf~dl~~lV~~Qge~id~I 241 (301)
+..+-+.+|+.++.+|..+.|.=
T Consensus 620 ~~~q~m~~L~e~lr~QQ~L~D~t 642 (851)
T TIGR02302 620 DMEQQMNKLGELMRKQQQLRDET 642 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777788888877753
No 93
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.09 E-value=1.1e+02 Score=28.21 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045802 217 LLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLE 260 (301)
Q Consensus 217 i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~ 260 (301)
+.+-...-.-...++.+||+.|++||.++..-......|.+.|.
T Consensus 88 ~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~ 131 (273)
T KOG3065|consen 88 AEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLT 131 (273)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHH
Confidence 34444555556677899999999999999998888888887775
No 94
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=40.95 E-value=1.6 Score=32.64 Aligned_cols=11 Identities=18% Similarity=0.727 Sum_probs=0.4
Q ss_pred ccchhhHHHHH
Q 045802 266 QKDSRKWTCIA 276 (301)
Q Consensus 266 ~~~~rk~~~~~ 276 (301)
.++.|+|++|+
T Consensus 61 ~rkKrrwlwLl 71 (81)
T PF14812_consen 61 PRKKRRWLWLL 71 (81)
T ss_dssp ----------T
T ss_pred ccccchhHHHH
Confidence 34444554443
No 95
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=40.90 E-value=32 Score=28.97 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=8.1
Q ss_pred HHHHHccchhhHHHHH
Q 045802 261 FAKESQKDSRKWTCIA 276 (301)
Q Consensus 261 kA~~~~~~~rk~~~~~ 276 (301)
...+.||..||++-++
T Consensus 20 as~~r~k~~~R~i~l~ 35 (161)
T PHA02673 20 ASVKRQKAIRRYIKLF 35 (161)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3445556556654333
No 96
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=40.33 E-value=83 Score=31.74 Aligned_cols=20 Identities=10% Similarity=0.421 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhhhhhcCC
Q 045802 281 IVLIIVFLFPLISTLIVNSP 300 (301)
Q Consensus 281 iiiilii~~~i~~~~~~~~~ 300 (301)
++|+|+++++|+.+..|.+|
T Consensus 486 liVLLAaLlSfLtg~~fq~~ 505 (538)
T PF05781_consen 486 LIVLLAALLSFLTGLFFQRC 505 (538)
T ss_pred HHHHHHHHHHHHhcccccch
Confidence 34455677777887665554
No 97
>PHA02819 hypothetical protein; Provisional
Probab=39.71 E-value=40 Score=24.42 Aligned_cols=29 Identities=24% Similarity=0.230 Sum_probs=19.4
Q ss_pred HHccchhhHHHHHHHHHHHHHHHHHHHHh
Q 045802 264 ESQKDSRKWTCIAILLGIVLIIVFLFPLI 292 (301)
Q Consensus 264 ~~~~~~rk~~~~~i~~~iiiilii~~~i~ 292 (301)
.+.++++++..|.+++++++.+++++-++
T Consensus 35 s~~~~~~~~~~~~~~ii~l~~~~~~~~~~ 63 (71)
T PHA02819 35 NYNKKTKKSFLRYYLIIGLVTIVFVIIFI 63 (71)
T ss_pred CCcccccCChhHHHHHHHHHHHHHHHHHH
Confidence 45566778888888887766655555333
No 98
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=39.23 E-value=52 Score=27.33 Aligned_cols=21 Identities=24% Similarity=0.072 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 045802 271 KWTCIAILLGIVLIIVFLFPL 291 (301)
Q Consensus 271 k~~~~~i~~~iiiilii~~~i 291 (301)
.|+++++|+++|+++++++.+
T Consensus 118 ~~~i~~~i~g~ll~i~~giy~ 138 (145)
T PF10661_consen 118 SPTILLSIGGILLAICGGIYV 138 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 99
>PRK00736 hypothetical protein; Provisional
Probab=39.22 E-value=1.4e+02 Score=21.28 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Q 045802 210 VKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRR 254 (301)
Q Consensus 210 i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 254 (301)
|..||..+.-.-+...+|+..|..|...||.....+..-.+.+..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888888889998888888777766665543
No 100
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.01 E-value=3.3e+02 Score=25.41 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHH
Q 045802 213 IEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVLI 284 (301)
Q Consensus 213 ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i~~~iiii 284 (301)
|=.=..+|..|..+=..++.-=+..+|.++-|++.|...+-+--..+. ....-.=|...+++++++|.+
T Consensus 239 lG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vS---SNRwLmvkiF~i~ivFflvfv 307 (311)
T KOG0812|consen 239 LGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVS---SNRWLMVKIFGILIVFFLVFV 307 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHH
Confidence 333355666666666666777777777777777777776655444443 233334455555555555544
No 101
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=38.48 E-value=3.6e+02 Score=25.76 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHH
Q 045802 213 IEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANS 250 (301)
Q Consensus 213 ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~ 250 (301)
+...+......|-++..-...-||.=-+++.-...+.+
T Consensus 111 ls~al~~~~~~fp~~~~~li~~GE~sG~L~~~l~~la~ 148 (399)
T PRK10573 111 FSEALLQWPQVFPPLYQALIATGELTGKLDECCFQLAR 148 (399)
T ss_pred HHHHHHhCcCcCCHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 44444444444544433333344444444444444433
No 102
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=38.15 E-value=36 Score=25.81 Aligned_cols=7 Identities=0% Similarity=0.245 Sum_probs=2.7
Q ss_pred hhhHHHH
Q 045802 269 SRKWTCI 275 (301)
Q Consensus 269 ~rk~~~~ 275 (301)
++++..+
T Consensus 8 ~K~k~~l 14 (96)
T PF13800_consen 8 AKRKSRL 14 (96)
T ss_pred HHHHHHH
Confidence 3344333
No 103
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=38.11 E-value=41 Score=24.54 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=11.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHH
Q 045802 267 KDSRKWTCIAILLGIVLIIVFL 288 (301)
Q Consensus 267 ~~~rk~~~~~i~~~iiiilii~ 288 (301)
++..+|.-+.++++.+++++++
T Consensus 40 ~~~~~~~~~~~~ii~ii~v~ii 61 (72)
T PF12575_consen 40 NKNNKNFNWIILIISIIFVLII 61 (72)
T ss_pred cCCCCcchHHHHHHHHHHHHHH
Confidence 4444566566666655443333
No 104
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=37.26 E-value=1.2e+02 Score=19.91 Aligned_cols=53 Identities=9% Similarity=0.132 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 045802 213 IEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKES 265 (301)
Q Consensus 213 ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~ 265 (301)
-.+.+..|.....++..|..+=|.+|..=..-++....++..+...+..|.+.
T Consensus 4 ~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~ 56 (60)
T cd00193 4 RDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKR 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777776667777777777777777776654
No 105
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=36.99 E-value=2.3e+02 Score=23.01 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHccchhhHH
Q 045802 244 HVAHANSFVRRGTEQLEFAKESQKDSRKWT 273 (301)
Q Consensus 244 nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~ 273 (301)
-+..|.+-|..-=.-|.+|++.+++.||-|
T Consensus 63 elaAAqevV~~LP~alq~aR~~~rr~rRpl 92 (133)
T PF10814_consen 63 ELAAAQEVVANLPQALQGARRRRRRRRRPL 92 (133)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhccccccch
Confidence 344555556555666777777777655544
No 106
>PHA02650 hypothetical protein; Provisional
Probab=36.93 E-value=44 Score=24.76 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=17.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhh
Q 045802 268 DSRKWTCIAILLGIVLIIVFLFPLIS 293 (301)
Q Consensus 268 ~~rk~~~~~i~~~iiiilii~~~i~~ 293 (301)
++.+|.-|.+++++++++++++-++.
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~l~~f 67 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVALFSF 67 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHH
Confidence 56778888888887666666554443
No 107
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=36.27 E-value=15 Score=37.28 Aligned_cols=65 Identities=14% Similarity=0.322 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045802 32 KFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKS 101 (301)
Q Consensus 32 ~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~ 101 (301)
.|.+-+..|...+.....-+.+++...++.-.. -..+..++..--..|+....+|-.+|+.++..
T Consensus 256 sFN~Ai~~I~~g~~t~~~Al~KiQ~VVN~q~~a-----L~~L~~qL~nnF~AISssI~dIy~RLd~leAd 320 (610)
T PF01601_consen 256 SFNKAIGNIQLGFTTTASALNKIQDVVNQQGQA-----LNQLTSQLSNNFGAISSSIQDIYNRLDQLEAD 320 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhc
Confidence 577777777777777777777777655432111 11222233333333445555555566666543
No 108
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=36.16 E-value=68 Score=23.77 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=29.5
Q ss_pred ccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 23 IRKGTENLDKFFDDVENVKEDMKVVEKLYKRLQESN 58 (301)
Q Consensus 23 ~~e~~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~ 58 (301)
.......-..|+.++.+|...|..+..-+.+++.-+
T Consensus 31 ~~~~~~~~d~F~keA~~i~~~I~~L~~fL~~iR~~Y 66 (87)
T PF10496_consen 31 IRPKTKPKDEFLKEAYRILSHITSLRKFLKSIRKAY 66 (87)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777899999999999999999998888665
No 109
>PRK02793 phi X174 lysis protein; Provisional
Probab=35.98 E-value=1.7e+02 Score=21.17 Aligned_cols=46 Identities=13% Similarity=0.183 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRR 254 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 254 (301)
.|..||..+.-.-+...+|+..|..|...|+.....+..-.+.+..
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777777778888888888888888888776666555443
No 110
>PRK02119 hypothetical protein; Provisional
Probab=35.97 E-value=1.7e+02 Score=21.22 Aligned_cols=47 Identities=6% Similarity=0.157 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Q 045802 208 DAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRR 254 (301)
Q Consensus 208 ~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 254 (301)
..|..||..+.-.-+...+|+..|..|...||.....+..-...+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777788888888888888889998888888777666555543
No 111
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=35.12 E-value=50 Score=29.99 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=26.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHH
Q 045802 240 DIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLG 280 (301)
Q Consensus 240 ~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i~~~ 280 (301)
+|-..++.=.-+++.|.++|.+-.+...++++|.+.+...+
T Consensus 94 ~i~~~v~~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~g~ 134 (250)
T COG2966 94 RISRAVEHGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMAGL 134 (250)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhhhCccccccHHHHHHHHH
Confidence 33334444455677888888776666677778876654443
No 112
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=34.80 E-value=4.2e+02 Score=25.45 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 045802 124 VVAGLGKKLKDTMD 137 (301)
Q Consensus 124 ~~~~L~~~f~~~~~ 137 (301)
+...+++-|+.+..
T Consensus 71 ~~~v~~kl~qsv~~ 84 (400)
T COG5613 71 AEDVLSKLFQSVSG 84 (400)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 113
>PHA02844 putative transmembrane protein; Provisional
Probab=34.66 E-value=53 Score=24.05 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=18.0
Q ss_pred HccchhhHHHHHHHHHHHHHHHHHHHHh
Q 045802 265 SQKDSRKWTCIAILLGIVLIIVFLFPLI 292 (301)
Q Consensus 265 ~~~~~rk~~~~~i~~~iiiilii~~~i~ 292 (301)
+.++++++.-+.+++++++.+++++-++
T Consensus 38 ~~~~~~~~~~~~~~ii~i~~v~~~~~~~ 65 (75)
T PHA02844 38 VNKNNVCSSSTKIWILTIIFVVFATFLT 65 (75)
T ss_pred ccccccCChhHHHHHHHHHHHHHHHHHH
Confidence 5556677888888887655555555333
No 114
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=34.64 E-value=65 Score=23.04 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=11.4
Q ss_pred CCCCCHHHHHHHhhC
Q 045802 163 GQQADEQMIENLISS 177 (301)
Q Consensus 163 ~~~~s~eeie~~~e~ 177 (301)
-|++++.++.++++.
T Consensus 26 ~P~at~~~l~~lve~ 40 (68)
T PF09164_consen 26 LPDATPTELKELVEK 40 (68)
T ss_dssp -TTS-HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 478999999999875
No 115
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=34.43 E-value=1.1e+02 Score=27.78 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=8.2
Q ss_pred HHHHHHHHccchhhHHHHHHH
Q 045802 258 QLEFAKESQKDSRKWTCIAIL 278 (301)
Q Consensus 258 ~l~kA~~~~~~~rk~~~~~i~ 278 (301)
+..+..+--|+.|..||++++
T Consensus 29 ~~~r~~~~~r~r~~~~~va~~ 49 (239)
T COG3736 29 EEDRVIKLERSRRLAWRVAIL 49 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444333333333
No 116
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=34.19 E-value=1.9e+02 Score=21.30 Aligned_cols=64 Identities=5% Similarity=0.152 Sum_probs=36.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHH
Q 045802 27 TENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKV 90 (301)
Q Consensus 27 ~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ 90 (301)
.++-...-.-+..+++.+..++....+|+...+..-...+......+...|+.++..+...+.+
T Consensus 9 ~~p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQ 72 (79)
T PF06657_consen 9 QSPGEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQ 72 (79)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667777788888888888877666655433444344444444444444444433333
No 117
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=34.05 E-value=81 Score=23.56 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=6.8
Q ss_pred chhhHHHHHHHHHHHH
Q 045802 268 DSRKWTCIAILLGIVL 283 (301)
Q Consensus 268 ~~rk~~~~~i~~~iii 283 (301)
+.||.++.++++++|+
T Consensus 11 ~~kkFl~~l~~vfiia 26 (85)
T PF10749_consen 11 EGKKFLLALAIVFIIA 26 (85)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3445444444443333
No 118
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=33.81 E-value=38 Score=20.85 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhhhhhc
Q 045802 283 LIIVFLFPLISTLIVN 298 (301)
Q Consensus 283 iilii~~~i~~~~~~~ 298 (301)
++.-|+++++++||++
T Consensus 18 ~iagIi~s~iv~w~~~ 33 (35)
T PF13940_consen 18 IIAGIIASLIVGWLRN 33 (35)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3345677789999876
No 119
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=32.42 E-value=2.4e+02 Score=21.98 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHH
Q 045802 208 DAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSF 251 (301)
Q Consensus 208 ~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~ 251 (301)
+.|..+...+.-..+-...+..-+..||+.|+.|...+..-...
T Consensus 53 eqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkR 96 (102)
T PF01519_consen 53 EQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKR 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555666666668899998888766554443
No 120
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=32.35 E-value=5.2e+02 Score=27.81 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 045802 215 KNLLELHQVFLDMFALVEAQGHQLNDI 241 (301)
Q Consensus 215 ~~i~eL~~lf~dl~~lV~~Qge~id~I 241 (301)
..-.+..+...+|+.|+.+|..+.|.=
T Consensus 581 ~~~~~~~q~m~~L~dl~r~Qq~L~D~t 607 (820)
T PF13779_consen 581 QQQQEMQQAMEELGDLLRRQQQLMDET 607 (820)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677788889999999999998864
No 121
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=32.35 E-value=4e+02 Score=24.47 Aligned_cols=36 Identities=25% Similarity=0.006 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHccch--hhHHHHHHHHHHHH
Q 045802 248 ANSFVRRGTEQLEFAKESQKDS--RKWTCIAILLGIVL 283 (301)
Q Consensus 248 a~~~v~~~~~~l~kA~~~~~~~--rk~~~~~i~~~iii 283 (301)
..++-++-.+..++|.+-+|.. -|.+-|++.++-+|
T Consensus 35 ~~e~~~~~~e~~~kaeeaqK~Gi~~kIf~wi~~avsvv 72 (306)
T PF04888_consen 35 AEEKAEEIEEAQEKAEEAQKAGIFSKIFGWIGTAVSVV 72 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 3334444444444444444543 24444444444333
No 122
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=31.80 E-value=55 Score=29.77 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 045802 270 RKWTCIAILLGIVLIIVFLFPLISTLIV 297 (301)
Q Consensus 270 rk~~~~~i~~~iiiilii~~~i~~~~~~ 297 (301)
||+.++++++. ++.+++.+|+.++.|-
T Consensus 195 RkR~i~f~llg-llfliiaigltvGT~~ 221 (256)
T PF09788_consen 195 RKRAIIFFLLG-LLFLIIAIGLTVGTWT 221 (256)
T ss_pred hhHHHHHHHHH-HHHHHHHHHHhhhhHH
Confidence 44444433333 3334555666666553
No 123
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=31.73 E-value=1.2e+02 Score=22.44 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 045802 272 WTCIAILLGIVLIIVFLFPLISTLI 296 (301)
Q Consensus 272 ~~~~~i~~~iiiilii~~~i~~~~~ 296 (301)
.+|=++.++++++.++++|+.+.|.
T Consensus 47 ~~WD~~m~~~~~~~~~~iP~~isF~ 71 (77)
T PF08412_consen 47 FYWDLIMLILLLYNLIIIPFRISFF 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheEe
Confidence 3333444445555577777776664
No 124
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=31.27 E-value=3.7e+02 Score=23.71 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 045802 204 QERHDAVKEIEKN 216 (301)
Q Consensus 204 ~~R~~ei~~ie~~ 216 (301)
.++++-+..++..
T Consensus 104 p~~~~~l~~l~~~ 116 (207)
T COG5278 104 PELLESLDDLEPL 116 (207)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 125
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=31.23 E-value=1.9e+02 Score=25.47 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=41.8
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHH
Q 045802 181 ENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSF 251 (301)
Q Consensus 181 ~~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~ 251 (301)
+.+- ..+.+.++..+..+|.+-+.=|++|..++..|..|.+--.+|..|+..=..|.+.|+.=+....++
T Consensus 106 e~YW-k~lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~~~~~~ 175 (200)
T PF07412_consen 106 ENYW-KELAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTGQELDN 175 (200)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 3443 345555555566777777777777777777777777766666666666666666666544444443
No 126
>PHA03049 IMV membrane protein; Provisional
Probab=31.19 E-value=66 Score=23.03 Aligned_cols=10 Identities=10% Similarity=0.418 Sum_probs=4.5
Q ss_pred HHHHHHHHHh
Q 045802 283 LIIVFLFPLI 292 (301)
Q Consensus 283 iilii~~~i~ 292 (301)
|+.+|+-|+.
T Consensus 14 Ii~lIvYgiY 23 (68)
T PHA03049 14 IIGLIVYGIY 23 (68)
T ss_pred HHHHHHHHHH
Confidence 3334555443
No 127
>PRK04406 hypothetical protein; Provisional
Probab=31.11 E-value=2.1e+02 Score=20.87 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVR 253 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~ 253 (301)
-|..||..+.-.-+...+|+..|..|...||.....+..-...+.
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777788888888888888888877666655543
No 128
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=30.73 E-value=5.3e+02 Score=25.38 Aligned_cols=59 Identities=8% Similarity=0.182 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045802 203 IQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEF 261 (301)
Q Consensus 203 i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~k 261 (301)
+.+=..+|..+++.|.+..+-+..|...+.++.+-|+.|+..+-.+.....+..+.+..
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~ 98 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD 98 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 33444577788888888888888888888888888888887777776666655555443
No 129
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=30.20 E-value=4.9e+02 Score=24.81 Aligned_cols=42 Identities=10% Similarity=0.270 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Q 045802 213 IEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRR 254 (301)
Q Consensus 213 ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 254 (301)
+...+......|-++..-...-||.=-+++..+....++.+.
T Consensus 113 ls~al~~~~~~fp~~~~~~i~~GE~sG~L~~~L~~~a~~~~~ 154 (399)
T TIGR02120 113 LADALAQHPRDFPPLYRALVAAGEASGALDAVLERLADYLEE 154 (399)
T ss_pred HHHHHHhCcccCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 444444444455555544444444444555555555555443
No 130
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=30.08 E-value=47 Score=32.06 Aligned_cols=11 Identities=18% Similarity=0.135 Sum_probs=4.7
Q ss_pred HHHHHHhhhhh
Q 045802 286 VFLFPLISTLI 296 (301)
Q Consensus 286 ii~~~i~~~~~ 296 (301)
.++..+..+++
T Consensus 54 g~~ya~~~pp~ 64 (377)
T PRK10381 54 GLLISFILPQK 64 (377)
T ss_pred HHHHHHhCCce
Confidence 33333445444
No 131
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=29.80 E-value=68 Score=23.02 Aligned_cols=8 Identities=13% Similarity=0.330 Sum_probs=3.5
Q ss_pred HHHHHHHh
Q 045802 285 IVFLFPLI 292 (301)
Q Consensus 285 lii~~~i~ 292 (301)
.+|+-|+.
T Consensus 16 ~lIlY~iY 23 (68)
T PF05961_consen 16 GLILYGIY 23 (68)
T ss_pred HHHHHHHH
Confidence 34444443
No 132
>PHA03240 envelope glycoprotein M; Provisional
Probab=29.58 E-value=57 Score=28.99 Aligned_cols=17 Identities=12% Similarity=0.301 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 045802 271 KWTCIAILLGIVLIIVF 287 (301)
Q Consensus 271 k~~~~~i~~~iiiilii 287 (301)
--.-|+|+++|||++||
T Consensus 211 aH~~WIiilIIiIiIII 227 (258)
T PHA03240 211 AHIAWIFIAIIIIIVII 227 (258)
T ss_pred chHhHHHHHHHHHHHHH
Confidence 34666665555544333
No 133
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=29.50 E-value=2.6e+02 Score=21.48 Aligned_cols=42 Identities=10% Similarity=0.064 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHH
Q 045802 208 DAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHAN 249 (301)
Q Consensus 208 ~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~ 249 (301)
.-|..||..-..+..=+.++-.=++.|..+.+..+.+++.-.
T Consensus 11 ~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~ 52 (98)
T PF11166_consen 11 WRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEIN 52 (98)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHH
Confidence 356677777666666666666677888888888888877743
No 134
>PHA03395 p10 fibrous body protein; Provisional
Probab=29.28 E-value=2.5e+02 Score=21.22 Aligned_cols=55 Identities=16% Similarity=0.384 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 39 NVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALE 99 (301)
Q Consensus 39 ~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~ 99 (301)
.|+..|..+..+++.|+...+... .+.-+..++..+++...... ..+...+..+.
T Consensus 8 ~Ir~dIkavd~KVdalQ~~V~~l~--~nlpdv~~l~~kLdaq~~~L----tti~tkv~~I~ 62 (87)
T PHA03395 8 LIRQDIKAVSDKVDALQAAVDDVR--ANLPDVTEINEKLDAQSASL----DTISSAVDNIT 62 (87)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH--hcCCcHHHHHHHHHhHHHHH----HHHHHHHHHHH
Confidence 356666666677776665554432 22234556777787776555 34444444444
No 135
>PRK13673 hypothetical protein; Provisional
Probab=29.10 E-value=1.2e+02 Score=24.30 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHccchh
Q 045802 255 GTEQLEFAKESQKDSR 270 (301)
Q Consensus 255 ~~~~l~kA~~~~~~~r 270 (301)
|--|+.-+++.+.+..
T Consensus 75 g~mEm~l~r~kk~k~~ 90 (118)
T PRK13673 75 GLMEMSLAKRKKGKPT 90 (118)
T ss_pred HHHHHHHHHHHcCCCc
Confidence 4455555555554443
No 136
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=28.75 E-value=58 Score=28.81 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 045802 272 WTCIAILLGIVL 283 (301)
Q Consensus 272 ~~~~~i~~~iii 283 (301)
++|+|||.++++
T Consensus 131 LIClIIIAVLfL 142 (227)
T PF05399_consen 131 LICLIIIAVLFL 142 (227)
T ss_pred HHHHHHHHHHHH
Confidence 455555444333
No 137
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=28.73 E-value=5.3e+02 Score=24.74 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=23.5
Q ss_pred ccccCCccccCCCccHHHHHHHHHHHHHHH
Q 045802 15 VDLEAGGVIRKGTENLDKFFDDVENVKEDM 44 (301)
Q Consensus 15 ~~~~~~~~~~e~~~~~~~f~~~v~~I~~~i 44 (301)
.+.+++..+-++.-...+|-.+++.+-..|
T Consensus 178 ~~~~~~~~i~es~vd~~eWklEvERV~PqL 207 (359)
T PF10498_consen 178 EEKQKPEEIIESKVDPAEWKLEVERVLPQL 207 (359)
T ss_pred ccccchhhcccccCCHHHHHHHHHHHhhhh
Confidence 455666777777788889999998888776
No 138
>PLN03160 uncharacterized protein; Provisional
Probab=28.70 E-value=17 Score=32.23 Aligned_cols=9 Identities=33% Similarity=0.427 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 045802 272 WTCIAILLG 280 (301)
Q Consensus 272 ~~~~~i~~~ 280 (301)
+.|++.+++
T Consensus 40 ~~~~~a~~l 48 (219)
T PLN03160 40 CGCITATLL 48 (219)
T ss_pred HHHHHHHHH
Confidence 444444333
No 139
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=28.21 E-value=3.7e+02 Score=22.73 Aligned_cols=7 Identities=29% Similarity=0.211 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 045802 258 QLEFAKE 264 (301)
Q Consensus 258 ~l~kA~~ 264 (301)
.|+...+
T Consensus 142 ~lr~~iE 148 (177)
T PF07798_consen 142 NLRTEIE 148 (177)
T ss_pred HHHHHHH
Confidence 3433333
No 140
>PHA03046 Hypothetical protein; Provisional
Probab=28.13 E-value=3.3e+02 Score=22.23 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVR 253 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~ 253 (301)
+|+.+.-.+.-|..+|+....-...-+..|+++|.+++....++-
T Consensus 85 ~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~Ml 129 (142)
T PHA03046 85 DIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNMI 129 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888999999988888899999999999888765543
No 141
>PHA03054 IMV membrane protein; Provisional
Probab=28.09 E-value=78 Score=22.95 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=15.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 045802 268 DSRKWTCIAILLGIVLIIVFLFPL 291 (301)
Q Consensus 268 ~~rk~~~~~i~~~iiiilii~~~i 291 (301)
+++++.-|.+++++++.+++++-+
T Consensus 41 ~~~~~~~~~~~ii~l~~v~~~~l~ 64 (72)
T PHA03054 41 NNTGCWGWYWLIIIFFIVLILLLL 64 (72)
T ss_pred cccCCchHHHHHHHHHHHHHHHHH
Confidence 456788888777776655555533
No 142
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=28.00 E-value=2.3e+02 Score=23.80 Aligned_cols=60 Identities=17% Similarity=0.095 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHH-HHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHH
Q 045802 219 ELHQVFLDMFAL-VEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVLI 284 (301)
Q Consensus 219 eL~~lf~dl~~l-V~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i~~~iiii 284 (301)
.|.++..-|+.. ++.|-..|+-...+ -....+.+..+ +.++.|-+|..-.++-++++|++
T Consensus 109 ~L~~lg~~LG~~D~~~Q~k~i~l~~~~---L~~~~~~a~~~---~~~~~Klyr~LGvl~G~~lvIlL 169 (170)
T PF09548_consen 109 ILLELGKSLGYSDREMQEKHIELYLEQ---LEQQLEEAREE---AKKKGKLYRSLGVLGGLFLVILL 169 (170)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHH---HHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHh
Confidence 344444444322 34444444333333 33333344433 34667778876555555555543
No 143
>PHA02513 V1 structural protein V1; Reviewed
Probab=27.98 E-value=1.7e+02 Score=23.22 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 045802 276 AILLGIVLIIVFLFPLISTLI 296 (301)
Q Consensus 276 ~i~~~iiiilii~~~i~~~~~ 296 (301)
+.+++.|++.+++++.++...
T Consensus 71 i~L~IFIliGivl~~pI~s~V 91 (135)
T PHA02513 71 LGLFIFILIGIVLLPVITSQV 91 (135)
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 333333444455555555443
No 144
>PHA02675 ORF104 fusion protein; Provisional
Probab=27.62 E-value=2.7e+02 Score=20.94 Aligned_cols=42 Identities=17% Similarity=0.353 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Q 045802 213 IEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRR 254 (301)
Q Consensus 213 ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 254 (301)
|+..+..|-+.|..+..-...=++.|++.|.+.+....++-.
T Consensus 35 le~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~ 76 (90)
T PHA02675 35 VEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALLK 76 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555788888888888899999999998877655543
No 145
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=27.21 E-value=56 Score=30.85 Aligned_cols=14 Identities=0% Similarity=-0.057 Sum_probs=6.5
Q ss_pred HHHHHHHhhhhhhc
Q 045802 285 IVFLFPLISTLIVN 298 (301)
Q Consensus 285 lii~~~i~~~~~~~ 298 (301)
+.++..++..|+..
T Consensus 44 lg~~Ya~~a~p~Yt 57 (325)
T PRK15471 44 LAVGYLAVAKEKWT 57 (325)
T ss_pred HHHHHHHhCCceeE
Confidence 33444455555543
No 146
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=27.19 E-value=86 Score=21.94 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=5.0
Q ss_pred HHHHHHHHHHcc
Q 045802 256 TEQLEFAKESQK 267 (301)
Q Consensus 256 ~~~l~kA~~~~~ 267 (301)
..-|.|-++.++
T Consensus 30 ~eil~ker~R~r 41 (64)
T COG4068 30 GEILNKERKRQR 41 (64)
T ss_pred HHHHHHHHHHHH
Confidence 334554443333
No 147
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.10 E-value=3.7e+02 Score=22.39 Aligned_cols=69 Identities=16% Similarity=0.299 Sum_probs=43.6
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 25 KGTENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEK 100 (301)
Q Consensus 25 e~~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~ 100 (301)
.++..+..+-.++.+++..+..+...+..|..-.....+.++ ..++...|..+. .-...+..+|..+..
T Consensus 69 ~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t---~~el~~~i~~l~----~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT---NEELREEIEELE----EEIEELEEKLEKLRS 137 (169)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 345667777778888888888888888887766555444444 233444555444 344555556666654
No 148
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=26.95 E-value=2.5e+02 Score=28.62 Aligned_cols=30 Identities=10% Similarity=0.271 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 045802 207 HDAVKEIEKNLLELHQVFLDMFALVEAQGH 236 (301)
Q Consensus 207 ~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge 236 (301)
+.+++.++.+|..|++=..-|+.+|-+-.-
T Consensus 434 ~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~ 463 (561)
T PF00429_consen 434 EEDLQALEDSISALQEQLTSLAEVVLQNRR 463 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 344555555555555555555544444333
No 149
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=26.88 E-value=2.2e+02 Score=25.37 Aligned_cols=52 Identities=21% Similarity=0.299 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 045802 246 AHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVLIIVFLFPLISTLIV 297 (301)
Q Consensus 246 ~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i~~~iiiilii~~~i~~~~~~ 297 (301)
.++...+..-..-|..|.+-.+..||.+-+.++++++|+++++...--..|+
T Consensus 166 at~~q~a~DVv~FL~w~aeP~~~~R~~~G~~vl~fL~il~~l~y~~kk~~W~ 217 (219)
T PF02167_consen 166 ATVDQMAKDVVNFLAWAAEPEKDERKRMGLKVLGFLLILTVLAYLLKKEYWS 217 (219)
T ss_dssp --HHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344444555677788888888788776666555555544444333333443
No 150
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=26.44 E-value=45 Score=21.48 Aligned_cols=9 Identities=0% Similarity=-0.116 Sum_probs=4.7
Q ss_pred HhhhhhhcC
Q 045802 291 LISTLIVNS 299 (301)
Q Consensus 291 i~~~~~~~~ 299 (301)
++..+|+++
T Consensus 31 ~l~~~~rR~ 39 (40)
T PF08693_consen 31 FLFFWYRRK 39 (40)
T ss_pred HhheEEecc
Confidence 445556653
No 151
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=26.25 E-value=2.1e+02 Score=19.28 Aligned_cols=48 Identities=4% Similarity=0.228 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGT 256 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~ 256 (301)
.+..|..-..+++.+..+=+.++..=..-+|+...++..+...+.++.
T Consensus 12 ~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~ 59 (63)
T PF05739_consen 12 SIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKAL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444455555555555555555555554443
No 152
>PHA02642 C-type lectin-like protein; Provisional
Probab=25.95 E-value=35 Score=30.36 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHH
Q 045802 270 RKWTCIAILLGIVL 283 (301)
Q Consensus 270 rk~~~~~i~~~iii 283 (301)
-|.+||.++++|+|
T Consensus 48 ~~~~~c~~~i~~l~ 61 (216)
T PHA02642 48 EKLYCCIITICILI 61 (216)
T ss_pred cceeeeeehHHHHH
Confidence 47777766665443
No 153
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=25.18 E-value=4e+02 Score=25.48 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHH
Q 045802 200 ISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFV 252 (301)
Q Consensus 200 l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v 252 (301)
+..+.++-++=..+...+.+.. .|-++..-...-||-=-+.+.-+....++.
T Consensus 302 ~~~i~~~v~~G~sls~al~~~~-~fp~~~~~~i~~GE~sG~L~~~L~~la~~~ 353 (399)
T PRK10573 302 LTQIQQQIAQGIPLWLALKNHP-LFPPLCLQLVRVGEESGSLDLMLENLAHWH 353 (399)
T ss_pred HHHHHHHHHCcccHHHHHhhCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3334433333344555555544 566655555556665555555544444433
No 154
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=24.94 E-value=4.2e+02 Score=22.29 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045802 202 EIQERHDAVKEIEKNLL 218 (301)
Q Consensus 202 ~i~~R~~ei~~ie~~i~ 218 (301)
-++.|+..++.+-..++
T Consensus 56 ~lr~Rydrlr~va~rvQ 72 (156)
T PF08372_consen 56 SLRMRYDRLRSVAGRVQ 72 (156)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46778888777766544
No 155
>smart00150 SPEC Spectrin repeats.
Probab=24.83 E-value=2.6e+02 Score=19.89 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=26.9
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045802 25 KGTENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETK 62 (301)
Q Consensus 25 e~~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~ 62 (301)
.....++..+...+.+...|......++.+...-....
T Consensus 28 ~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~ 65 (101)
T smart00150 28 KDLESVEALLKKHEALEAELEAHEERVEALNELGEQLI 65 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34556667777778888888888888887777655543
No 156
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=24.77 E-value=6.1e+02 Score=24.13 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHH
Q 045802 213 IEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVR 253 (301)
Q Consensus 213 ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~ 253 (301)
+...+.+- .+|-++..-...-||.=.+++.-+..+.++.+
T Consensus 316 ls~al~~~-~~fp~~~~~mi~~GE~sG~L~~~L~~~a~~~~ 355 (399)
T TIGR02120 316 LSRALRAT-GLFPPLLVHMIASGEKSGQLETMLERAADNQE 355 (399)
T ss_pred HHHHHhcC-CCCCHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 44444442 25555655556667776666666665555544
No 157
>PRK13887 conjugal transfer protein TrbF; Provisional
Probab=24.32 E-value=1.9e+02 Score=26.01 Aligned_cols=8 Identities=13% Similarity=0.692 Sum_probs=3.4
Q ss_pred cchhhHHH
Q 045802 267 KDSRKWTC 274 (301)
Q Consensus 267 ~~~rk~~~ 274 (301)
++++.|++
T Consensus 50 ~~~~~w~v 57 (250)
T PRK13887 50 SQRQTWQV 57 (250)
T ss_pred HHHHHHHH
Confidence 33344544
No 158
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=24.02 E-value=8.6e+02 Score=25.56 Aligned_cols=106 Identities=9% Similarity=0.086 Sum_probs=63.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChH-----hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 29 NLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAK-----TMK---QIRARMDSDVEQVLKRVKVIKGKLEALEK 100 (301)
Q Consensus 29 ~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~-----~~~---~l~~~i~~l~~~i~~~~~~i~~~L~~l~~ 100 (301)
.+.+++..+.+-+..|..+...+++++..-.+.+.+.... +.+ +...-+.++...++++-..++..|..++.
T Consensus 37 ~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~~~~~dl~e~vsqm~~~vK~~L~~vK~ 116 (683)
T PF08580_consen 37 AAEQILDWIQKAKDVLYGLREGLEEIDSAISRFLDLIEVYVSAIEDLQLREDIANSLFDLIEEVSQMELDVKKTLISVKK 116 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554443333222221 111 11113666777778888889999999887
Q ss_pred hhHhccCCCCCCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 101 SNAANRKVPGCGPGSSVD-RTRTSVVAGLGKKLKDTMDDFQHLRA 144 (301)
Q Consensus 101 ~~~~~k~~~~~~~~s~~~-rir~~~~~~L~~~f~~~~~~f~~~Q~ 144 (301)
..+-. -+. .+-.++...|....-+.+..+-++|.
T Consensus 117 qveiA----------mE~~EL~~~vlg~l~~EIe~~~~~vfemeE 151 (683)
T PF08580_consen 117 QVEIA----------MEWEELWNDVLGDLDNEIEECIRLVFEMEE 151 (683)
T ss_pred HHHHH----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65531 122 46678888888888888888887763
No 159
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=23.88 E-value=7.5e+02 Score=24.83 Aligned_cols=54 Identities=9% Similarity=0.239 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Q 045802 201 SEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRR 254 (301)
Q Consensus 201 ~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 254 (301)
..+..=...+..|...+.++.+++.+++.-+.+|...++.|..++.....-++.
T Consensus 433 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~ 486 (554)
T PRK15041 433 TLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 486 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667888999999999999999999999999999998887765555444
No 160
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=23.80 E-value=31 Score=30.61 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=16.2
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHhhhhhhcCC
Q 045802 270 RKWTCIAILLG-IVLIIVFLFPLISTLIVNSP 300 (301)
Q Consensus 270 rk~~~~~i~~~-iiiilii~~~i~~~~~~~~~ 300 (301)
|-++.+.++.+ +.|||||++.+++.-|+-+|
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~ 67 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVRYCRQSP 67 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHHHHhhcc
Confidence 33444444433 34555666666666666554
No 161
>PHA02831 EEV host range protein; Provisional
Probab=23.66 E-value=67 Score=29.52 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcC
Q 045802 276 AILLGIVLIIVFLFPLISTLIVNS 299 (301)
Q Consensus 276 ~i~~~iiiilii~~~i~~~~~~~~ 299 (301)
+++++.||.+++++|++..+.-++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~ 256 (268)
T PHA02831 233 IIILLSIICFIFVLGLIALFLSCN 256 (268)
T ss_pred ehhHHHHHHHHHHHHHHHHhhccc
Confidence 344555566778888887777665
No 162
>PF13239 2TM: 2TM domain
Probab=23.62 E-value=1.5e+02 Score=21.76 Aligned_cols=10 Identities=30% Similarity=0.245 Sum_probs=4.5
Q ss_pred HHHHHccchh
Q 045802 261 FAKESQKDSR 270 (301)
Q Consensus 261 kA~~~~~~~r 270 (301)
+|.++.++.+
T Consensus 4 ~A~~~v~~~k 13 (83)
T PF13239_consen 4 RAKKRVKRRK 13 (83)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 163
>PHA02414 hypothetical protein
Probab=23.58 E-value=3.5e+02 Score=20.93 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFV 252 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v 252 (301)
+-..|+..+.||++|..-|..=+.-|.|---.|-|.++.-.+.+
T Consensus 30 dn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i 73 (111)
T PHA02414 30 DNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKI 73 (111)
T ss_pred chHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHH
Confidence 55678888999999988877777777776666767666544443
No 164
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.18 E-value=5.9e+02 Score=24.75 Aligned_cols=54 Identities=13% Similarity=0.232 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHH
Q 045802 199 TISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVR 253 (301)
Q Consensus 199 ~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~ 253 (301)
.+.++.++-++=..+...+.... +|..+.......||---+.+.-++.+.++-+
T Consensus 299 ~~~~~~~~v~~G~sl~~al~~~~-~Fp~~~~~mi~~GEesG~L~~mL~~~A~~~~ 352 (397)
T COG1459 299 ALEEIIQEVREGGSLSQALEKTG-LFPPLLLQMIAVGEESGKLDEMLEKVADFYE 352 (397)
T ss_pred HHHHHHHHHHcchhHHHHHHhCC-CChHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 34445555555555566665554 8888888888899888888877777665544
No 165
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=23.04 E-value=45 Score=27.96 Aligned_cols=25 Identities=8% Similarity=0.284 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh
Q 045802 271 KWTCIAILLGIVLIIVFLFPLISTL 295 (301)
Q Consensus 271 k~~~~~i~~~iiiilii~~~i~~~~ 295 (301)
.++|-++.++++.+.++++.+++.+
T Consensus 130 ~K~Cki~~Li~~~vc~~ilVivVpi 154 (159)
T PF06789_consen 130 SKVCKIFALIVLAVCAVILVIVVPI 154 (159)
T ss_pred HHHHHHHHHHHHHHHHheEEEEEEE
Confidence 3445554444444434444455543
No 166
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=22.65 E-value=4.2e+02 Score=21.60 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=14.9
Q ss_pred hcCChHhHHHHHHHHHHHHHHHHHH
Q 045802 63 VAHNAKTMKQIRARMDSDVEQVLKR 87 (301)
Q Consensus 63 ~~~~~~~~~~l~~~i~~l~~~i~~~ 87 (301)
.+++..|-..|+.+|+.|...+..+
T Consensus 104 gvPs~~dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 104 GVPSRKDVEALSARIDQLTAQVERL 128 (132)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666665554443
No 167
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=22.29 E-value=3.5e+02 Score=20.39 Aligned_cols=62 Identities=10% Similarity=0.299 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045802 35 DDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSN 102 (301)
Q Consensus 35 ~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~~ 102 (301)
.+++.....+..+...++.+...-... ..++ +-|..++.-...+++....-.+.|+.|.++|
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~--eLs~----e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRR--ELSP----EARRSLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHccc--CCCh----HHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 455666666666666666665432111 1222 3355666666666677777777777777654
No 168
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=22.26 E-value=4.1e+02 Score=21.26 Aligned_cols=44 Identities=23% Similarity=0.226 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045802 220 LHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAK 263 (301)
Q Consensus 220 L~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~ 263 (301)
|.++|..|..|++.=..-++.+|..--.|-..+-.+..+|++..
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLa 45 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLA 45 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 45666666666655444455677777777777777777777644
No 169
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=21.67 E-value=1.4e+02 Score=25.29 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHH
Q 045802 249 NSFVRRGTEQLEFAKESQKDSRKWTCIA 276 (301)
Q Consensus 249 ~~~v~~~~~~l~kA~~~~~~~rk~~~~~ 276 (301)
.-..+.+.++|++-.+......+|..++
T Consensus 81 ~~~~~ea~~~L~~I~~~~~~y~~~~~~l 108 (193)
T PF06738_consen 81 QLSLEEAIERLDEIDREPPRYPPWLVIL 108 (193)
T ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 3345677888877666654555664443
No 170
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=21.65 E-value=4.9e+02 Score=21.87 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHhHHHHHHHHHHHHHHHHH
Q 045802 197 MDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQ-LNDIESHVAHANSFVRRGTEQLEF 261 (301)
Q Consensus 197 ~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~-id~Ie~nv~~a~~~v~~~~~~l~k 261 (301)
..+.++++.=.+.|+.|......+.+=|+-+.....++-+. ++.++.+|..-..-++.+.+.+.-
T Consensus 75 ~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~ 140 (157)
T COG3352 75 QDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLRE 140 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 34445555555566666666667777777777777777777 888888888887777776665543
No 171
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=21.41 E-value=1.1e+02 Score=27.68 Aligned_cols=6 Identities=33% Similarity=0.257 Sum_probs=2.6
Q ss_pred Hhhhhh
Q 045802 291 LISTLI 296 (301)
Q Consensus 291 i~~~~~ 296 (301)
+.+.+|
T Consensus 52 LalTiW 57 (292)
T KOG3950|consen 52 LALTIW 57 (292)
T ss_pred HHHHHH
Confidence 344444
No 172
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=21.01 E-value=1.6e+02 Score=22.68 Aligned_cols=23 Identities=17% Similarity=-0.000 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHccchhhHHHHH
Q 045802 254 RGTEQLEFAKESQKDSRKWTCIA 276 (301)
Q Consensus 254 ~~~~~l~kA~~~~~~~rk~~~~~ 276 (301)
.|...|..+..|..+.+.+-+.+
T Consensus 32 ~G~~YL~~~y~y~~sh~WRN~GI 54 (103)
T PF06422_consen 32 SGDDYLEESYGYSYSHRWRNFGI 54 (103)
T ss_pred eHHHHHhhhccccccchhhhHHH
Confidence 56678887888887775443333
No 173
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=20.61 E-value=2.2e+02 Score=19.18 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 045802 250 SFVRRGTEQLEFAKES 265 (301)
Q Consensus 250 ~~v~~~~~~l~kA~~~ 265 (301)
++......|+++..--
T Consensus 4 ~f~~~~~~Elkkv~WP 19 (57)
T PF00584_consen 4 NFFREVKKELKKVTWP 19 (57)
T ss_dssp HHHHCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 4556667777755433
No 174
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=20.59 E-value=1.8e+02 Score=22.94 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHH
Q 045802 254 RGTEQLEFAKESQKDSRKWTCIAIL 278 (301)
Q Consensus 254 ~~~~~l~kA~~~~~~~rk~~~~~i~ 278 (301)
=|--|+.-|++.+.+..+..++.++
T Consensus 76 I~lmEm~l~rkkk~k~~~~~~~~~i 100 (110)
T PF07457_consen 76 IGLMEMALARKKKGKPTKILWWLFI 100 (110)
T ss_pred HHHHHHHHHHHHcCCCccHHHHHHH
Confidence 3455666666666655444333333
No 175
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=20.14 E-value=2.8e+02 Score=18.40 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045802 210 VKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKE 264 (301)
Q Consensus 210 i~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~ 264 (301)
+.+-...+..|.....++..+..+=|.+|+.=...++....++..+...+..|.+
T Consensus 7 ~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~ 61 (66)
T smart00397 7 EEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANK 61 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555555555555555555543
No 176
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=20.10 E-value=2e+02 Score=18.97 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 045802 272 WTCIAILLGIVL 283 (301)
Q Consensus 272 ~~~~~i~~~iii 283 (301)
|+.+++-++||+
T Consensus 4 wlt~iFsvvIil 15 (49)
T PF11044_consen 4 WLTTIFSVVIIL 15 (49)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
Done!