Query 045802
Match_columns 301
No_of_seqs 170 out of 1303
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 09:34:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 100.0 7.4E-46 2.5E-50 337.2 14.1 248 20-275 20-267 (267)
2 2xhe_B Syntaxin1; exocytosis, 100.0 6.7E-40 2.3E-44 300.0 12.5 245 20-270 33-279 (279)
3 1fio_A SSO1 protein; four heli 100.0 8.3E-32 2.8E-36 233.8 18.7 193 29-235 3-196 (196)
4 3hd7_B Syntaxin-1A; membrane p 100.0 5.1E-28 1.7E-32 190.8 14.1 101 194-296 7-107 (109)
5 3c98_B Syntaxin-1A; protein co 99.9 6.9E-25 2.4E-29 198.1 14.0 247 21-275 33-279 (279)
6 1jth_B Syntaxin 1A; coiled-coi 99.9 2E-24 7E-29 159.9 10.4 77 199-275 1-77 (77)
7 1s94_A S-syntaxin; three helix 99.9 6.8E-23 2.3E-27 175.6 10.3 153 20-178 27-180 (180)
8 2nps_B Syntaxin 13, vesicle-as 99.9 2.1E-22 7.2E-27 146.7 9.6 70 204-273 2-71 (71)
9 1sfc_B Protein (syntaxin 1A), 99.9 4.4E-22 1.5E-26 149.4 10.5 77 194-270 7-83 (83)
10 3b5n_B Protein SSO1; snare com 99.9 3.6E-21 1.2E-25 139.4 10.9 69 199-267 1-69 (69)
11 1n7s_B Syntaxin 1A; neuronal s 99.8 6.8E-20 2.3E-24 132.3 9.3 66 198-263 2-67 (68)
12 1ez3_A Syntaxin-1A; three heli 99.8 6.7E-19 2.3E-23 142.2 15.5 125 25-154 2-126 (127)
13 1gl2_B Syntaxin 7; membrane pr 99.8 2.7E-19 9.3E-24 127.9 8.4 64 201-264 2-65 (65)
14 2dnx_A Syntaxin-12; snare, HAB 98.9 9.9E-08 3.4E-12 76.9 15.5 114 30-154 9-122 (130)
15 3hd7_A Vesicle-associated memb 97.3 0.0049 1.7E-07 46.1 12.2 42 209-250 6-47 (91)
16 1hs7_A Syntaxin VAM3; UP-and-D 97.3 0.0033 1.1E-07 47.6 10.5 86 39-152 7-93 (97)
17 2nps_D Syntaxin-6; vesicle fus 97.2 0.0014 4.8E-08 48.1 7.8 65 203-267 14-78 (82)
18 3hd7_B Syntaxin-1A; membrane p 97.2 0.014 4.8E-07 45.1 13.6 84 198-285 18-101 (109)
19 1n7s_D SNAP-25A; neuronal snar 97.1 0.0057 1.9E-07 42.9 9.7 56 206-261 8-63 (66)
20 1gl2_D Syntaxin 8, vesicle tra 97.0 0.0032 1.1E-07 44.0 7.5 58 204-261 5-62 (65)
21 1sfc_D Protein (SNAP-25B), pro 96.8 0.01 3.5E-07 43.9 9.7 58 204-261 25-82 (87)
22 1l4a_D S-SNAP25 fusion protein 96.4 0.013 4.4E-07 43.5 7.8 57 205-261 27-83 (87)
23 3b5n_D Protein transport prote 96.2 0.047 1.6E-06 38.0 9.2 55 206-260 8-62 (64)
24 1nhl_A Synaptosomal-associated 95.3 0.14 4.7E-06 34.3 8.3 46 215-260 7-52 (54)
25 2kog_A Vesicle-associated memb 95.2 0.0024 8.3E-08 50.2 -0.8 38 209-246 34-71 (119)
26 3b5n_C Protein transport prote 94.1 0.53 1.8E-05 33.2 9.2 39 227-265 31-69 (70)
27 1n7s_C SNAP-25A; neuronal snar 93.2 1.4 4.6E-05 31.8 10.5 53 209-261 24-76 (79)
28 1l4a_C S-SNAP25 fusion protein 89.6 0.53 1.8E-05 34.3 4.9 45 215-259 34-78 (83)
29 3hd7_A Vesicle-associated memb 82.7 12 0.00041 27.4 12.6 26 197-222 22-47 (91)
30 4dnd_A Syntaxin-10, SYN10; str 80.7 19 0.00064 28.2 11.1 113 15-135 11-124 (130)
31 2nps_B Syntaxin 13, vesicle-as 75.6 17 0.00059 25.1 8.5 63 201-263 6-68 (71)
32 1gl2_C VTI1B, vesicle transpor 75.1 17 0.00058 24.8 8.9 49 212-260 13-61 (65)
33 2kog_A Vesicle-associated memb 63.9 8.7 0.0003 29.7 4.5 16 199-214 52-67 (119)
34 3n27_A Fusion glycoprotein F0, 63.7 24 0.00083 25.1 6.3 61 203-265 15-75 (80)
35 1jth_B Syntaxin 1A; coiled-coi 63.0 36 0.0012 23.7 9.4 65 200-264 9-73 (77)
36 1n7s_B Syntaxin 1A; neuronal s 62.9 33 0.0011 23.3 9.3 54 202-255 13-66 (68)
37 2wvr_A Geminin; DNA replicatio 61.6 50 0.0017 27.8 8.9 72 181-253 96-167 (209)
38 3b5n_B Protein SSO1; snare com 58.0 42 0.0014 22.9 9.7 56 202-257 11-66 (69)
39 1gl2_B Syntaxin 7; membrane pr 55.7 44 0.0015 22.5 8.0 55 202-256 10-64 (65)
40 1deq_A Fibrinogen (alpha chain 52.2 1.2E+02 0.004 28.1 10.5 65 38-102 63-129 (390)
41 1uii_A Geminin; human, DNA rep 49.7 69 0.0024 23.0 8.7 48 186-233 31-78 (83)
42 2nps_C Vesicle transport throu 48.6 69 0.0024 22.6 10.9 57 209-265 20-76 (81)
43 3ghg_A Fibrinogen alpha chain; 48.1 2E+02 0.0068 27.8 14.2 51 83-149 107-157 (562)
44 3j1r_A Archaeal adhesion filam 47.5 25 0.00085 19.4 3.2 16 282-297 10-25 (26)
45 1wlq_A Geminin; coiled-coil; 2 46.7 78 0.0027 22.7 8.7 56 187-242 24-79 (83)
46 1sfc_B Protein (syntaxin 1A), 45.0 79 0.0027 22.3 9.5 60 200-259 20-79 (83)
47 2l5g_B Putative uncharacterize 43.6 56 0.0019 20.3 4.8 28 32-59 6-33 (42)
48 2k1a_A Integrin alpha-IIB; sin 42.8 30 0.001 21.6 3.6 6 292-297 28-33 (42)
49 1deq_A Fibrinogen (alpha chain 42.8 2.1E+02 0.007 26.4 10.7 16 202-217 142-157 (390)
50 3efg_A Protein SLYX homolog; x 39.4 97 0.0033 21.8 6.4 46 209-254 15-60 (78)
51 2ww9_B Protein transport prote 38.4 18 0.00063 25.9 2.3 28 236-263 13-40 (80)
52 3c98_B Syntaxin-1A; protein co 37.6 8.8 0.0003 32.9 0.7 65 201-265 212-276 (279)
53 1sfc_A VAMP 2, protein (synapt 34.6 1.3E+02 0.0045 21.9 9.5 39 209-247 31-69 (96)
54 3ghg_A Fibrinogen alpha chain; 31.0 3.7E+02 0.013 25.9 12.8 16 203-218 140-155 (562)
55 3s4r_A Vimentin; alpha-helix, 30.2 1.6E+02 0.0054 21.4 10.1 28 29-56 17-44 (93)
56 2ke4_A CDC42-interacting prote 27.4 1.8E+02 0.0063 21.3 6.6 51 32-82 19-69 (98)
57 2k1k_A Ephrin type-A receptor 26.8 79 0.0027 19.1 3.5 22 277-298 16-37 (38)
58 2lf0_A Uncharacterized protein 25.3 2.3E+02 0.0078 21.6 6.8 20 41-60 9-28 (123)
59 2beq_A E2 glycoprotein; viral 25.1 1.2E+02 0.0041 18.4 4.4 31 212-242 3-33 (38)
60 3swy_A Cyclic nucleotide-gated 24.4 1.4E+02 0.0048 18.9 4.8 23 123-145 12-34 (46)
61 1l4a_A Synaptobrevin; snare, s 24.2 1.8E+02 0.0063 20.2 6.0 38 209-246 16-53 (80)
62 3ajm_A Programmed cell death p 23.7 3.3E+02 0.011 22.9 11.8 24 80-103 120-143 (213)
63 3uul_A Utrophin; spectrin repe 23.2 2.1E+02 0.0071 20.4 11.4 35 27-61 35-69 (118)
64 3swf_A CGMP-gated cation chann 20.4 2E+02 0.0068 20.1 5.0 25 122-146 13-37 (74)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=100.00 E-value=7.4e-46 Score=337.22 Aligned_cols=248 Identities=23% Similarity=0.393 Sum_probs=196.4
Q ss_pred CccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 20 GGVIRKGTENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALE 99 (301)
Q Consensus 20 ~~~~~e~~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~ 99 (301)
...+++++++|+.||+.|++|+..|..|..++++|+++|.+.++.+++ ++.++.+|+.++.+|+++++.|+.+|+.|+
T Consensus 20 ~~~~~~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~--~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~ 97 (267)
T 1dn1_B 20 VTVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIE 97 (267)
T ss_dssp -------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999999999999987654443 346789999999999999999999999998
Q ss_pred HhhHhccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCHHHHHHHhhCCC
Q 045802 100 KSNAANRKVPGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISSGE 179 (301)
Q Consensus 100 ~~~~~~k~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~r~~~~i~~~~~s~eeie~~~e~g~ 179 (301)
..+... +++.+++++.|+|++|+.+|+++|+++|..|+.+|..|+.+++.++.|+|. |.||+++++++++++++|+
T Consensus 98 ~~~~~~---~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~-i~~~~~tdeeie~~ie~g~ 173 (267)
T 1dn1_B 98 QSIEQE---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLE-ITGRTTTSEELEDMLESGN 173 (267)
T ss_dssp HHHHHH---HHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHTCS
T ss_pred HHHhhc---cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-ccCCCCCHHHHHHHHhCCc
Confidence 875431 122344567899999999999999999999999999999999999988665 6789999999999999998
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 045802 180 SENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQL 259 (301)
Q Consensus 180 ~~~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l 259 (301)
++.|.+..+.++ ++++.++.++++||++|.+||++|.+|++||.||+.||++||++||+||+||+.|..||+.|..+|
T Consensus 174 ~~~f~q~~l~~~--~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l 251 (267)
T 1dn1_B 174 PAIFASGIIMDS--SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDT 251 (267)
T ss_dssp SCTTTTTCCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---
T ss_pred HHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877765433332 356788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccchhhHHHH
Q 045802 260 EFAKESQKDSRKWTCI 275 (301)
Q Consensus 260 ~kA~~~~~~~rk~~~~ 275 (301)
.+|.+|++++|||.||
T Consensus 252 ~kA~~~q~~~rkk~~~ 267 (267)
T 1dn1_B 252 KKAVKYQSKARRKKIM 267 (267)
T ss_dssp ----------------
T ss_pred HHHHHHHHHhcCcccC
Confidence 9999999999999886
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=6.7e-40 Score=299.99 Aligned_cols=245 Identities=23% Similarity=0.411 Sum_probs=180.4
Q ss_pred CccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 20 GGVIRKGTENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALE 99 (301)
Q Consensus 20 ~~~~~e~~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~ 99 (301)
...++++++.|++|++.|++|+..|..|..++.+|..+|.+.+..+.+.+.+.++.+|+.++.+|+++++.|+..|+.|+
T Consensus 33 ~~~~~~~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~ 112 (279)
T 2xhe_B 33 TSLSAQPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIE 112 (279)
T ss_dssp -------CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999988766566666668899999999999999999999999999
Q ss_pred HhhHhccCCCCCCCC-cH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCHHHHHHHhhC
Q 045802 100 KSNAANRKVPGCGPG-SS-VDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISS 177 (301)
Q Consensus 100 ~~~~~~k~~~~~~~~-s~-~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~r~~~~i~~~~~s~eeie~~~e~ 177 (301)
..+......++++.+ +. +.|++++++.+|+++|+++|..|+.+|..|...++.++.|+ +.+.+|.+++++++.++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~-~~i~~~~~~~ee~~~~~e~ 191 (279)
T 2xhe_B 113 KENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQ-CRVVEPSLSDDAIQKVIEH 191 (279)
T ss_dssp HHHHTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-CCSSCCCCSSTTHHHHHHH
T ss_pred HHHHHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCHHHHHHHHhC
Confidence 876543211122222 22 66999999999999999999999999999999999988764 4567888899999999998
Q ss_pred CCchhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH
Q 045802 178 GESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTE 257 (301)
Q Consensus 178 g~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~ 257 (301)
|++..|.+ . ...++..++.++++||++|.+||++|.||++||.||+.||++||++||+||+||+.|..||+.|..
T Consensus 192 g~~~~f~q--~---~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~ 266 (279)
T 2xhe_B 192 GTEGIFSG--M---RLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATE 266 (279)
T ss_dssp C----------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC-----
T ss_pred CchHHHHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 87666654 1 112234567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccchh
Q 045802 258 QLEFAKESQKDSR 270 (301)
Q Consensus 258 ~l~kA~~~~~~~r 270 (301)
+|.+|.+|+|++|
T Consensus 267 ~l~kA~~~qk~~R 279 (279)
T 2xhe_B 267 QVVQARHYQESAR 279 (279)
T ss_dssp -------------
T ss_pred HHHHHHHHhHccC
Confidence 9999999999886
No 3
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=100.00 E-value=8.3e-32 Score=233.84 Aligned_cols=193 Identities=20% Similarity=0.350 Sum_probs=166.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCC
Q 045802 29 NLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKV 108 (301)
Q Consensus 29 ~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~~~~~k~~ 108 (301)
.||.||+.|++|+..|..|+.++.+|.++|.+.+..+++.+.+.++.+|+.++.+|+++++.|+.+|+.|+....
T Consensus 3 ~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~----- 77 (196)
T 1fio_A 3 DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI----- 77 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence 578999999999999999999999999999998777777666788999999999999999999999999987421
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCHHHHHHHhhCCCchhHHHHHH
Q 045802 109 PGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISSGESENFLQKAI 188 (301)
Q Consensus 109 ~~~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~r~~~~i~~~~~s~eeie~~~e~g~~~~~~q~~l 188 (301)
..|++++++.+|+++|+++|..|+.+|..|..+||+++.|+|.. .+|++++++++.++++|+...+|++.+
T Consensus 78 --------~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i-~~~~~~~~e~~~~~~~~~~~~~f~~~~ 148 (196)
T 1fio_A 78 --------HDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMI-IQPEATEDEVEAAISDVGGQQIFSQAL 148 (196)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTCCHHHHHHHTSHHHHHHHHHHHT
T ss_pred --------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHcCCchhHHHHHH
Confidence 24899999999999999999999999999999999999988764 578899999998887543444455444
Q ss_pred H-HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045802 189 Q-EQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQG 235 (301)
Q Consensus 189 ~-~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qg 235 (301)
. +++.+++..+++++++||++|.+||++|.|||+||.|||.||++||
T Consensus 149 ~~~~~~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 149 LNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3 3445567789999999999999999999999999999999999998
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.95 E-value=5.1e-28 Score=190.83 Aligned_cols=101 Identities=30% Similarity=0.451 Sum_probs=86.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHH
Q 045802 194 GQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWT 273 (301)
Q Consensus 194 ~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~ 273 (301)
++++.+++++++||++|.+||++|.||++||+||+.||++||++||+||+|++.|.+||++|..+|.+|.+|||++|||+
T Consensus 7 ~~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~ 86 (109)
T 3hd7_B 7 SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK 86 (109)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 045802 274 CIAILLGIVLIIVFLFPLISTLI 296 (301)
Q Consensus 274 ~~~i~~~iiiilii~~~i~~~~~ 296 (301)
||++++++|++ ++++++++++
T Consensus 87 ~i~l~~~~i~~--~i~~~~~~~~ 107 (109)
T 3hd7_B 87 IMIIICCVILG--IIIASTIGGI 107 (109)
T ss_dssp HHHHHHHHHHH--HHHHHHHTTC
T ss_pred eehHHHHHHHH--HHHHHHhccc
Confidence 77766554443 2234455554
No 5
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.92 E-value=6.9e-25 Score=198.06 Aligned_cols=247 Identities=22% Similarity=0.392 Sum_probs=177.5
Q ss_pred ccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 21 GVIRKGTENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEK 100 (301)
Q Consensus 21 ~~~~e~~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~ 100 (301)
....+.+.+|++||.+|++|...|..|...+++|..++.+.+..+ .+.......++.++.+++.++..++..++.+..
T Consensus 33 ~~~~~~~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~ 110 (279)
T 3c98_B 33 TVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASP--NPDEKTKEELEELMSDIKKTANKVRSKLKSIEQ 110 (279)
T ss_dssp ------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566889999999999999999999999999999998765433 334455678899999999999999999888876
Q ss_pred hhHhccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCHHHHHHHhhCCCc
Q 045802 101 SNAANRKVPGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISSGES 180 (301)
Q Consensus 101 ~~~~~k~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~r~~~~i~~~~~s~eeie~~~e~g~~ 180 (301)
...... ..+......+.+.+|...|+..|..++..|...+..|...+++.+.+... ..++.+++.+.......+..
T Consensus 111 ~~~~~~---~i~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~la~-~~~~~~~~~~~~~~~~~~~~ 186 (279)
T 3c98_B 111 SIEQEE---GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLE-ITGRTTTSEELEDMLESGNP 186 (279)
T ss_dssp HHHHHH---TTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCCCCHHHHHHHHHSCCT
T ss_pred HHHHhh---hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCccchHHHHHHHhhhh
Confidence 554432 22344567789999999999999999999999999999888888875443 35666666554443334433
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045802 181 ENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLE 260 (301)
Q Consensus 181 ~~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~ 260 (301)
..+..... ....+....+.++++++.++..|+.+|.+|+++|.+|+.+|.+||+++|+|++||+.+.++|+.|..+|.
T Consensus 187 ~~~~~~~~--~~~~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~ 264 (279)
T 3c98_B 187 AIFASGII--MDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 264 (279)
T ss_dssp TSSTTTSC--SCSSSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222111 1122345677889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccchhhHHHH
Q 045802 261 FAKESQKDSRKWTCI 275 (301)
Q Consensus 261 kA~~~~~~~rk~~~~ 275 (301)
+|.+|++++|||.|+
T Consensus 265 ~A~~~q~~~Rkkk~i 279 (279)
T 3c98_B 265 KAVKYQSKARRKKIM 279 (279)
T ss_dssp ---------------
T ss_pred HHHHHHHHHhCcCcC
Confidence 999999999999875
No 6
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.91 E-value=2e-24 Score=159.92 Aligned_cols=77 Identities=35% Similarity=0.576 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHH
Q 045802 199 TISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCI 275 (301)
Q Consensus 199 ~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~ 275 (301)
+|+++++|+++|.+||++|.||++||.||+.||.+||++||+||+||+.|..||+.|..+|.+|.+|++++|||+||
T Consensus 1 ~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 1 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999998875
No 7
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.88 E-value=6.8e-23 Score=175.64 Aligned_cols=153 Identities=18% Similarity=0.360 Sum_probs=103.3
Q ss_pred CccccC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 20 GGVIRK-GTENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEAL 98 (301)
Q Consensus 20 ~~~~~e-~~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l 98 (301)
....++ ++++|+.||++|++|+..|..|..++.+|+++|.+.++. +.+.+.++.+|+.++.+|+.+++.|+.+|+.|
T Consensus 27 ~~~~~~~~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~--~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l 104 (180)
T 1s94_A 27 VAVQVDSGGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSA--PQTDDQMKEELEELMTDIKRTANKVRGKLKTI 104 (180)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566 889999999999999999999999999999999987654 44566788999999999999999999999999
Q ss_pred HHhhHhccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCHHHHHHHhhCC
Q 045802 99 EKSNAANRKVPGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISSG 178 (301)
Q Consensus 99 ~~~~~~~k~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~r~~~~i~~~~~s~eeie~~~e~g 178 (301)
+..+... +++++++++.|+|++|+.+|+++|+++|..|+.+|..|+.+||++++|+| .|.+|++|++++++++++|
T Consensus 105 ~~~~~~~---~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~Rq~-~I~~~~~teeeie~~ie~G 180 (180)
T 1s94_A 105 ELNIEQE---EHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKRQM-EITGRTTTNEELEDMLESG 180 (180)
T ss_dssp HHHHHHT---C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC-------------------------
T ss_pred HHHHHhh---hccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHhCc
Confidence 9887653 34556777889999999999999999999999999999999999998655 5789999999999999876
No 8
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.87 E-value=2.1e-22 Score=146.71 Aligned_cols=70 Identities=31% Similarity=0.523 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHH
Q 045802 204 QERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWT 273 (301)
Q Consensus 204 ~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~ 273 (301)
++|+++|.+|+++|.+|++||.||+.||.+||++||+||+||+.|..||+.|..+|.+|.+|++++|||+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999884
No 9
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.87 E-value=4.4e-22 Score=149.37 Aligned_cols=77 Identities=35% Similarity=0.556 Sum_probs=70.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchh
Q 045802 194 GQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSR 270 (301)
Q Consensus 194 ~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~r 270 (301)
++++.++.++++|+++|.+|+++|.||++||.||+.||.+||++||+||+||+.|..||++|..+|.+|.+|++++|
T Consensus 7 ~~~~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 7 SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999876
No 10
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.85 E-value=3.6e-21 Score=139.37 Aligned_cols=69 Identities=32% Similarity=0.452 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 045802 199 TISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQK 267 (301)
Q Consensus 199 ~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~ 267 (301)
+|+++++|+++|.+|+++|.+|++||.||+.||.+||++||+||+||+.|..||++|..+|.+|.+|+|
T Consensus 1 al~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 1 ALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467899999999999999999999999999999999999999999999999999999999999999986
No 11
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.81 E-value=6.8e-20 Score=132.29 Aligned_cols=66 Identities=38% Similarity=0.628 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045802 198 DTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAK 263 (301)
Q Consensus 198 ~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~ 263 (301)
.+++++++|+++|.+|+++|.+|++||.||+.||.+||++||+||+||+.|..||++|..+|.+|.
T Consensus 2 ~~l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 2 SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468899999999999999999999999999999999999999999999999999999999999985
No 12
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.81 E-value=6.7e-19 Score=142.18 Aligned_cols=125 Identities=16% Similarity=0.310 Sum_probs=109.5
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 045802 25 KGTENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAA 104 (301)
Q Consensus 25 e~~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~~~~ 104 (301)
+++++|+.||++|++|+..|..|+.++++|..+|.+.+..+. ..+.++.+|+.++.+|+.+++.|+.+|+.|+..+..
T Consensus 2 ~~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~--~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~ 79 (127)
T 1ez3_A 2 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPN--PDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 79 (127)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999876555 355688999999999999999999999999988765
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045802 105 NRKVPGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETI 154 (301)
Q Consensus 105 ~k~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~ 154 (301)
. +++++++++.|+|++|+.+|+++|+++|.+|+.+|..|+..++.++
T Consensus 80 ~---~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~ri 126 (127)
T 1ez3_A 80 E---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI 126 (127)
T ss_dssp H---HTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred h---cccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 3556778889999999999999999999999999988776666543
No 13
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.79 E-value=2.7e-19 Score=127.91 Aligned_cols=64 Identities=25% Similarity=0.557 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045802 201 SEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKE 264 (301)
Q Consensus 201 ~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~ 264 (301)
+++++|+++|.+|+++|.+|++||+||+.||.+||++||+||+||+.|..||++|..+|.+|.+
T Consensus 2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3588999999999999999999999999999999999999999999999999999999999864
No 14
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=9.9e-08 Score=76.95 Aligned_cols=114 Identities=12% Similarity=0.184 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCC
Q 045802 30 LDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKVP 109 (301)
Q Consensus 30 ~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~~~~~k~~~ 109 (301)
.++|-..++.|...|..|..++..|+++.. .++++.|.++++++|+.+...++.+++.+...|+.|..- +
T Consensus 9 ~~ef~~l~~~is~~I~~In~~vs~l~r~v~---~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~-------~ 78 (130)
T 2dnx_A 9 LRDFSSIIQTCSGNIQRISQATAQIKNLMS---QLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSL-------P 78 (130)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-------C
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------c
Confidence 356888999999999999999999999875 457788999999999999999999999999999999862 1
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045802 110 GCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETI 154 (301)
Q Consensus 110 ~~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~ 154 (301)
. ....++.|.++.+...|.++|+.++..|+.+|..+..+.|..+
T Consensus 79 ~-~~~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~ 122 (130)
T 2dnx_A 79 L-PLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESI 122 (130)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 0 0123456888999999999999999999999998887766654
No 15
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.33 E-value=0.0049 Score=46.14 Aligned_cols=42 Identities=7% Similarity=0.174 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANS 250 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~ 250 (301)
.+.++...+.|+..++.+=-.-|-+.||-||.++.-.+.-..
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~ 47 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 47 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 567788888888888888888888999999988866554333
No 16
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=97.25 E-value=0.0033 Score=47.56 Aligned_cols=86 Identities=9% Similarity=0.123 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHhccCCCCCCCCcHH
Q 045802 39 NVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMD-SDVEQVLKRVKVIKGKLEALEKSNAANRKVPGCGPGSSV 117 (301)
Q Consensus 39 ~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~-~l~~~i~~~~~~i~~~L~~l~~~~~~~k~~~~~~~~s~~ 117 (301)
+....|..+...|..|+++.. -+++..|...+|.+|+ .+...++.+.++|. .|..+ +
T Consensus 7 d~~~li~t~s~niq~l~k~~~---qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~-~l~~l-----------------~- 64 (97)
T 1hs7_A 7 ELSNLIETFAEQSRVLEKECT---KIGSKRDSKELRYKIETELIPNCTSVRDKIE-SNILI-----------------H- 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH-HSTHH-----------------H-
T ss_pred cHHHHHHHHHHHHHHHHHHHH---HhCCCcchHHHHHHHHHHHHHHHHHHHHHHH-Hhccc-----------------c-
Confidence 445556666677777777664 3688889999999999 88888888877766 11111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 118 DRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKE 152 (301)
Q Consensus 118 ~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~ 152 (301)
+...|.++|..+...|+.+|..|..+.++
T Consensus 65 ------qkeRL~~dF~~l~~~fQ~~qr~y~ek~~e 93 (97)
T 1hs7_A 65 ------QNGKLSADFKNLKTKYQSLQQSYNQRKSL 93 (97)
T ss_dssp ------HCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667899999999999999888766544
No 17
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=97.20 E-value=0.0014 Score=48.13 Aligned_cols=65 Identities=11% Similarity=0.082 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 045802 203 IQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQK 267 (301)
Q Consensus 203 i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~ 267 (301)
+++..+.+..|..++..|++|-.+|+..|..|..+||.++..++.+...+..+.+.+.+..+..+
T Consensus 14 ~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~ 78 (82)
T 2nps_D 14 GRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTS 78 (82)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44556688999999999999999999999999999999999999999999999999988766544
No 18
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.17 E-value=0.014 Score=45.09 Aligned_cols=84 Identities=12% Similarity=0.149 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHH
Q 045802 198 DTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAI 277 (301)
Q Consensus 198 ~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i 277 (301)
....++.+=++.+.+|..-..+|..|..+=+.++..=...+++...|++.+...+.+|.+.=++++ +...|+++++
T Consensus 18 eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~r----kk~~i~l~~~ 93 (109)
T 3hd7_B 18 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR----RKKIMIIICC 93 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CcceehHHHH
Confidence 344567777788888999999999999999999999999999999999999999999987755443 3446666665
Q ss_pred HHHHHHHH
Q 045802 278 LLGIVLII 285 (301)
Q Consensus 278 ~~~iiiil 285 (301)
+++++|+.
T Consensus 94 ~i~~~i~~ 101 (109)
T 3hd7_B 94 VILGIIIA 101 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555553
No 19
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=97.09 E-value=0.0057 Score=42.85 Aligned_cols=56 Identities=13% Similarity=0.215 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045802 206 RHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEF 261 (301)
Q Consensus 206 R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~k 261 (301)
-.+.+..|...+..|+.|-.+|+.-|..|..+||.|+..++.+...+..+.+.+.+
T Consensus 8 qD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 8 MDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999888764
No 20
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.97 E-value=0.0032 Score=44.01 Aligned_cols=58 Identities=12% Similarity=0.227 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045802 204 QERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEF 261 (301)
Q Consensus 204 ~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~k 261 (301)
++..+.+..|...+..|+.|-.+|+..|..|..+||.++..++.+...+..+.+.+.+
T Consensus 5 ~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 5 QEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445688999999999999999999999999999999999999999999998887754
No 21
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.83 E-value=0.01 Score=43.93 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045802 204 QERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEF 261 (301)
Q Consensus 204 ~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~k 261 (301)
.+-.+.+..|...+..|+.|-.+|+..|..|..+||+|+..++.+...+..+.+.+.+
T Consensus 25 ~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 25 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455688999999999999999999999999999999999999999999999888764
No 22
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=96.45 E-value=0.013 Score=43.46 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045802 205 ERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEF 261 (301)
Q Consensus 205 ~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~k 261 (301)
+-.+.+..|...+..|+.|-.+|+..|..|.++||+|+..++.+...+..+++.+.+
T Consensus 27 eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 27 DMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999999999999999999999887764
No 23
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.047 Score=37.99 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045802 206 RHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLE 260 (301)
Q Consensus 206 R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~ 260 (301)
-...+..|...+.-|+.|-.+|+.-|..|-++||+|+..++.+...+..+.+.|.
T Consensus 8 ~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~ 62 (64)
T 3b5n_D 8 IDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLA 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457888999999999999999999999999999999999999999999888775
No 24
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=95.30 E-value=0.14 Score=34.27 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045802 215 KNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLE 260 (301)
Q Consensus 215 ~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~ 260 (301)
+-+.|-.++-......+..|||.|++|+.++.....++..|.+.|.
T Consensus 7 ~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 7 GLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 3344555566666778899999999999999999999999998874
No 25
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=95.21 E-value=0.0024 Score=50.23 Aligned_cols=38 Identities=8% Similarity=0.194 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVA 246 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~ 246 (301)
.+.++...+.|+..++.+=-.-|-+.||-||.++...+
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe 71 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRAD 71 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 45666777777777777777778888998888875543
No 26
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=94.06 E-value=0.53 Score=33.17 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=33.1
Q ss_pred HHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 045802 227 MFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKES 265 (301)
Q Consensus 227 l~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~ 265 (301)
-..++..|||.|++||.|++.+..+...|.+.|..-..+
T Consensus 31 Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 31 TLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344678999999999999999999999999988765544
No 27
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=93.25 E-value=1.4 Score=31.76 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEF 261 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~k 261 (301)
-+++-.+-+.|-.++-......++.||+.|++++.++..+..++..|.+.|..
T Consensus 24 s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 24 STRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 33444455566666777777889999999999999999999999999988853
No 28
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=89.61 E-value=0.53 Score=34.32 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 045802 215 KNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQL 259 (301)
Q Consensus 215 ~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l 259 (301)
+-+.+-.+.-..-..++..||+.|++|+.+++....+...|.+.|
T Consensus 34 ~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 34 NMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555666789999999999999999988887776554
No 29
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=82.71 E-value=12 Score=27.37 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 197 MDTISEIQERHDAVKEIEKNLLELHQ 222 (301)
Q Consensus 197 ~~~l~~i~~R~~ei~~ie~~i~eL~~ 222 (301)
..+++.+-+|.+.+..|...-.+|..
T Consensus 22 ~~NI~kvL~RgekL~~L~~kt~~L~~ 47 (91)
T 3hd7_A 22 RVNVDKVLERDQKLSELDDRADALQA 47 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHH
Confidence 34555666666666665555554443
No 30
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=80.66 E-value=19 Score=28.23 Aligned_cols=113 Identities=20% Similarity=0.223 Sum_probs=51.0
Q ss_pred ccccCCccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 15 VDLEAGGVIRKGTENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGK 94 (301)
Q Consensus 15 ~~~~~~~~~~e~~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~ 94 (301)
+|+-..-.-+........||.-.++|+..|..++.....-..+... ++.. .+..++.+..++...+..+...
T Consensus 11 ~~~~~~~~~~~~ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~----~~~~----s~~E~~~~~~EL~~~l~sie~d 82 (130)
T 4dnd_A 11 VDLGTENLYFQSMSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQE----SAAV----GREELDWTTNELRNGLRSIEWD 82 (130)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccceeeecCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcc----CCCc----chHHHHHHHHHHHHHHHHHHHH
Confidence 3554443333333445579999999998888877776654433221 1100 0224455666666666777777
Q ss_pred HHHHHHhhHhccCCC-CCCCCcHHHHHHHHHHHHHHHHHHHH
Q 045802 95 LEALEKSNAANRKVP-GCGPGSSVDRTRTSVVAGLGKKLKDT 135 (301)
Q Consensus 95 L~~l~~~~~~~k~~~-~~~~~s~~~rir~~~~~~L~~~f~~~ 135 (301)
|.+|++.+.-...-| ..+-+..+..-|+..+..+...+.++
T Consensus 83 LeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~m 124 (130)
T 4dnd_A 83 LEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEM 124 (130)
T ss_dssp HHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777766544211001 01222334445555565555555443
No 31
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=75.56 E-value=17 Score=25.05 Aligned_cols=63 Identities=16% Similarity=0.244 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045802 201 SEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAK 263 (301)
Q Consensus 201 ~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~ 263 (301)
.++..=.+.|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|...-.+++
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 68 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSR 68 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555678888888899999999999999999999999999999999999999988765543
No 32
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=75.13 E-value=17 Score=24.76 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045802 212 EIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLE 260 (301)
Q Consensus 212 ~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~ 260 (301)
.-.+-+.|--++-.....-+..|+|.|.+....+..+..++..|.+-|.
T Consensus 13 ~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 13 RSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 3344455556666677777899999999999999999999999988775
No 33
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=63.90 E-value=8.7 Score=29.67 Aligned_cols=16 Identities=19% Similarity=0.563 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHHHH
Q 045802 199 TISEIQERHDAVKEIE 214 (301)
Q Consensus 199 ~l~~i~~R~~ei~~ie 214 (301)
+++.+-+|.+.|..|+
T Consensus 52 NIdkvLeRGEkLd~L~ 67 (119)
T 2kog_A 52 NVDKVLERDQKLSELD 67 (119)
T ss_dssp HHHHHHCCCCSSCCCC
T ss_pred HHHHHHHcccHHHHHH
Confidence 3344444444444333
No 34
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=63.72 E-value=24 Score=25.10 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 045802 203 IQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKES 265 (301)
Q Consensus 203 i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~ 265 (301)
+++-++.|.+|......+.-..+-+-.-|..+|.+ .|.-++..|....+.+...|+|+++.
T Consensus 15 Iq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~ 75 (80)
T 3n27_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHH
Confidence 56666677777777777766666666667777765 57777889999999999999887653
No 35
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=62.99 E-value=36 Score=23.75 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045802 200 ISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKE 264 (301)
Q Consensus 200 l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~ 264 (301)
..++..=.+.|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|...-.++++
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rk 73 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34556666778888888888999999999999988899999999999999999998887665544
No 36
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=62.90 E-value=33 Score=23.32 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHH
Q 045802 202 EIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRG 255 (301)
Q Consensus 202 ~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~ 255 (301)
++..=.+.|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|
T Consensus 13 ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 13 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666666666666666666666667777766666665
No 37
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=61.64 E-value=50 Score=27.77 Aligned_cols=72 Identities=11% Similarity=0.190 Sum_probs=47.5
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHH
Q 045802 181 ENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVR 253 (301)
Q Consensus 181 ~~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~ 253 (301)
+.+-+ .+.+.++..+..+|.+-+.=|.+|..++..|..|.++-.++..|+..=..|.+-|+.=+....++.+
T Consensus 96 e~YWk-~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~e 167 (209)
T 2wvr_A 96 SQYWK-EVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFE 167 (209)
T ss_dssp TTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 34443 4555666666778888888888888888888888888888888877777777777655555544443
No 38
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=58.01 E-value=42 Score=22.90 Aligned_cols=56 Identities=9% Similarity=0.233 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH
Q 045802 202 EIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTE 257 (301)
Q Consensus 202 ~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~ 257 (301)
++.+=.+.|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|.+
T Consensus 11 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 11 ELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666677777777777777777777777777777777777766654
No 39
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=55.65 E-value=44 Score=22.49 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHH
Q 045802 202 EIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGT 256 (301)
Q Consensus 202 ~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~ 256 (301)
++..=.+.|..|..-..+|..|..+=+.+|..=...++....||..+...+.+|.
T Consensus 10 ~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 10 SIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444455666677777777777777777777777777777777777777776654
No 40
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.23 E-value=1.2e+02 Score=28.06 Aligned_cols=65 Identities=8% Similarity=0.172 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCh--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045802 38 ENVKEDMKVVEKLYKRLQESNEETKVAHNA--KTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSN 102 (301)
Q Consensus 38 ~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~--~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~~ 102 (301)
..++..|.+|+..+..+.+.|......+.. +-.+.--.+..+.-+-+.+....++.+|..|++.+
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V 129 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKV 129 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777776554322211 00011111223333334455555566666665543
No 41
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=49.68 E-value=69 Score=22.97 Aligned_cols=48 Identities=15% Similarity=0.332 Sum_probs=39.4
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 186 KAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEA 233 (301)
Q Consensus 186 ~~l~~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~ 233 (301)
..+.+.++..+..+|.+-+.=|+.|..++..|..|.++..++..|+..
T Consensus 31 k~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 31 KEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667788888999999999999999999999999888764
No 42
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=48.55 E-value=69 Score=22.64 Aligned_cols=57 Identities=7% Similarity=0.068 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKES 265 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~ 265 (301)
-|..-..-+.|=-++-..+..-+..|.|.|.+....+..+..++..+.+-|..-.+.
T Consensus 20 ~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr 76 (81)
T 2nps_C 20 RLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRR 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 444455556666667777777789999999999999999999999999988765443
No 43
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=48.12 E-value=2e+02 Score=27.78 Aligned_cols=51 Identities=12% Similarity=0.268 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 83 QVLKRVKVIKGKLEALEKSNAANRKVPGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAE 149 (301)
Q Consensus 83 ~i~~~~~~i~~~L~~l~~~~~~~k~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~ 149 (301)
.+++.+..++.+|..|+..++. .+ .++..|...+.+...+-++.+.+...+
T Consensus 107 tynE~S~ELRRrIqyLKekVdn--------------Ql--snIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIE--------------KV--QHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHH--------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555677777777765432 11 344566666666666666666665433
No 44
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=47.55 E-value=25 Score=19.42 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhhhhh
Q 045802 282 VLIIVFLFPLISTLIV 297 (301)
Q Consensus 282 iiilii~~~i~~~~~~ 297 (301)
+|++.++.++++-.|+
T Consensus 10 LIviav~aaVllylW~ 25 (26)
T 3j1r_A 10 LILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334555566666665
No 45
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=46.69 E-value=78 Score=22.69 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=35.1
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 045802 187 AIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIE 242 (301)
Q Consensus 187 ~l~~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie 242 (301)
.+.+.++..+..+|.+-+.=|+.|..+...|..|.+.-.+|..|-..=.-|-+-|+
T Consensus 24 ~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~ 79 (83)
T 1wlq_A 24 EVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIE 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544555677777777777777777777777777776666655444444443
No 46
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=44.98 E-value=79 Score=22.29 Aligned_cols=60 Identities=12% Similarity=0.165 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 045802 200 ISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQL 259 (301)
Q Consensus 200 l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l 259 (301)
..++.+=.+.|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|...-
T Consensus 20 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 79 (83)
T 1sfc_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666667888888888999999999999999889999999999999999998887643
No 47
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=43.62 E-value=56 Score=20.30 Aligned_cols=28 Identities=14% Similarity=0.493 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 32 KFFDDVENVKEDMKVVEKLYKRLQESNE 59 (301)
Q Consensus 32 ~f~~~v~~I~~~i~~i~~~i~~L~~l~~ 59 (301)
+.++.++.|...|.+.+.+|.+|++...
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888887776554
No 48
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=42.79 E-value=30 Score=21.57 Aligned_cols=6 Identities=0% Similarity=0.052 Sum_probs=2.3
Q ss_pred hhhhhh
Q 045802 292 ISTLIV 297 (301)
Q Consensus 292 ~~~~~~ 297 (301)
+...|+
T Consensus 28 ~~~LwK 33 (42)
T 2k1a_A 28 VLAMWK 33 (42)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333343
No 49
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.78 E-value=2.1e+02 Score=26.45 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 045802 202 EIQERHDAVKEIEKNL 217 (301)
Q Consensus 202 ~i~~R~~ei~~ie~~i 217 (301)
.|++...+|++||..|
T Consensus 142 ~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 142 NVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566667788888877
No 50
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=39.40 E-value=97 Score=21.80 Aligned_cols=46 Identities=11% Similarity=0.032 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRR 254 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 254 (301)
.|..||..+.-.-+...+|+..|..|...||.....+..-...+..
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777888888888888888888777666655543
No 51
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=38.35 E-value=18 Score=25.86 Aligned_cols=28 Identities=36% Similarity=0.442 Sum_probs=16.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045802 236 HQLNDIESHVAHANSFVRRGTEQLEFAK 263 (301)
Q Consensus 236 e~id~Ie~nv~~a~~~v~~~~~~l~kA~ 263 (301)
.|.|.++.-++...+.+..+.+-|+.|.
T Consensus 13 ~~~d~~~~~~e~~~~f~kd~~rvlk~~~ 40 (80)
T 2ww9_B 13 QSNNQVEKLVEAPVEFVREGTQFLAKCK 40 (80)
T ss_dssp --------CCHHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3557778888888888888888887654
No 52
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=37.62 E-value=8.8 Score=32.92 Aligned_cols=65 Identities=12% Similarity=0.177 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 045802 201 SEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKES 265 (301)
Q Consensus 201 ~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l~kA~~~ 265 (301)
..+.+=...|..|...+.+|..+..+-+..+.+=...++.+..++..+...+.+|...-.++++.
T Consensus 212 ~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkk 276 (279)
T 3c98_B 212 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 276 (279)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34445556777777788888888888888888877888888889999999999888777666654
No 53
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=34.63 E-value=1.3e+02 Score=21.88 Aligned_cols=39 Identities=8% Similarity=0.182 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAH 247 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~ 247 (301)
.|.++...+.++..++.+=-.-|.+.|+-||.++.-.+.
T Consensus 31 ~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~ 69 (96)
T 1sfc_A 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 567788888888888888888889999999988765444
No 54
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.00 E-value=3.7e+02 Score=25.93 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 045802 203 IQERHDAVKEIEKNLL 218 (301)
Q Consensus 203 i~~R~~ei~~ie~~i~ 218 (301)
|++...+|++||.+|.
T Consensus 140 Ledq~~kIQRLEvDId 155 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555667777777664
No 55
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=30.15 E-value=1.6e+02 Score=21.35 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 29 NLDKFFDDVENVKEDMKVVEKLYKRLQE 56 (301)
Q Consensus 29 ~~~~f~~~v~~I~~~i~~i~~~i~~L~~ 56 (301)
-+..|++.|..+...-..+..++..+..
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3557888888888888888777766654
No 56
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=27.36 E-value=1.8e+02 Score=21.27 Aligned_cols=51 Identities=4% Similarity=0.117 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHH
Q 045802 32 KFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVE 82 (301)
Q Consensus 32 ~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ 82 (301)
.....+.+++..|.+-....+-|.+++.-+..-+...|...+..+|+....
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~ 69 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLS 69 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHH
Confidence 467778888888877777777777777655433444444444444444433
No 57
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=26.81 E-value=79 Score=19.07 Aligned_cols=22 Identities=14% Similarity=0.319 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhc
Q 045802 277 ILLGIVLIIVFLFPLISTLIVN 298 (301)
Q Consensus 277 i~~~iiiilii~~~i~~~~~~~ 298 (301)
+++..++.++++++++.-+|++
T Consensus 16 iVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 16 VIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred eehHHHHHHHHHHHHHHHHeec
Confidence 3444444344444444445543
No 58
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=25.27 E-value=2.3e+02 Score=21.65 Aligned_cols=20 Identities=10% Similarity=0.318 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045802 41 KEDMKVVEKLYKRLQESNEE 60 (301)
Q Consensus 41 ~~~i~~i~~~i~~L~~l~~~ 60 (301)
+.+|..+++.++.++.....
T Consensus 9 K~Eiq~L~drLD~~~rKlaa 28 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQAD 28 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666655443
No 59
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=25.12 E-value=1.2e+02 Score=18.38 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 045802 212 EIEKNLLELHQVFLDMFALVEAQGHQLNDIE 242 (301)
Q Consensus 212 ~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie 242 (301)
.+.+++...+.-+..+-..|.+||..|...-
T Consensus 3 q~~~g~~tv~~AL~KiQ~VVN~q~~aL~~Lt 33 (38)
T 2beq_A 3 QIQESLTTTSTALGKLQDVVNQNAQALNTLV 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4566777777778888888888888887653
No 60
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=24.40 E-value=1.4e+02 Score=18.87 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045802 123 SVVAGLGKKLKDTMDDFQHLRAK 145 (301)
Q Consensus 123 ~~~~~L~~~f~~~~~~f~~~Q~~ 145 (301)
+.+..|..+|..++.+|...|..
T Consensus 12 ~~ld~LqTr~ArLlae~~ssq~K 34 (46)
T 3swy_A 12 SSLDTLQTRFARLLAEYNATQMK 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999854
No 61
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=24.17 E-value=1.8e+02 Score=20.19 Aligned_cols=38 Identities=5% Similarity=0.182 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHH
Q 045802 209 AVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVA 246 (301)
Q Consensus 209 ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~ 246 (301)
.|.++...+.++..++.+=-.-|.+.|+-||.++.-.+
T Consensus 16 ~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~ 53 (80)
T 1l4a_A 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRAD 53 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45666777777777777777778888888888876544
No 62
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=23.72 E-value=3.3e+02 Score=22.93 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Q 045802 80 DVEQVLKRVKVIKGKLEALEKSNA 103 (301)
Q Consensus 80 l~~~i~~~~~~i~~~L~~l~~~~~ 103 (301)
..+-|+..+..|+..|+.+..-..
T Consensus 120 FL~tIKeIAsaIKklLDAvn~v~~ 143 (213)
T 3ajm_A 120 FLQTIKDIASAIKELLDTVNNVFK 143 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677888888888888876544
No 63
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=23.20 E-value=2.1e+02 Score=20.43 Aligned_cols=35 Identities=9% Similarity=0.173 Sum_probs=21.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 27 TENLDKFFDDVENVKEDMKVVEKLYKRLQESNEET 61 (301)
Q Consensus 27 ~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~ 61 (301)
...+..-+.+...+...|..-...++.+...-...
T Consensus 35 ~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L 69 (118)
T 3uul_A 35 VEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQL 69 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666666554443
No 64
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.38 E-value=2e+02 Score=20.09 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802 122 TSVVAGLGKKLKDTMDDFQHLRAKM 146 (301)
Q Consensus 122 ~~~~~~L~~~f~~~~~~f~~~Q~~~ 146 (301)
.+.+..|..+|..++.+|...|...
T Consensus 13 E~sld~LQTrfARLLaEy~ssQ~KL 37 (74)
T 3swf_A 13 ESSVDLLQTRFARILAEYESMQQKL 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788899999999999998653
Done!