BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045807
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B OS=Arabidopsis thaliana
GN=U2AF35B PE=2 SV=1
Length = 283
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 203/289 (70%), Positives = 223/289 (77%), Gaps = 14/289 (4%)
Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
Query: 61 GVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120
GVDPQGQ LDP KIQDHFEDFYED+FEEL+K+GE+ESLN+CDNLADHM+GNVYV F+EE+
Sbjct: 61 GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120
Query: 121 HAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
HAA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K+ISREL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180
Query: 181 RRRLFGRSRRRRSRSRSRSRSPHKYRGGYEERSHGGGRGSGRRDDDRDHRLHGRGRRPRS 240
RR+LFGR RR R R E H R G D RD HG G+R
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKRE---HSRERERG---DVRDRDRHGNGKRSSD 234
Query: 241 RSP-----GRRGGRSRSPGARRRSP--VRESSVERRAKIEQWNREKEQA 282
RS G R SP R RSP VRE S ERRA+IEQWNRE+++
Sbjct: 235 RSERHDRDGGGRRRHGSP-KRSRSPRNVREGSEERRARIEQWNRERDEG 282
>sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza sativa subsp.
japonica GN=U2AF35A PE=2 SV=1
Length = 290
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/307 (64%), Positives = 221/307 (71%), Gaps = 44/307 (14%)
Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH KPS+SPTLLLSNMY RPDMITP
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60
Query: 61 GVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120
G+D QG +DP KIQ FEDFYED+FEELSKYGEIESL++CDN ADHM+GNVYVQFREE+
Sbjct: 61 GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120
Query: 121 HAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
AA AL+ L GR+Y+GRPIIV+FSPV+DFREATCRQYEEN CNRGGYCNFMH+K+I R+L
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180
Query: 181 RRRLFG---RSRRRRSRSRSRSRSPHK-------------------YRGGYEERSHGGGR 218
R+RLFG RSRR S RSRS SP+ YRGG + GG R
Sbjct: 181 RKRLFGHLHRSRRSHSHGRSRSPSPYHYRRDYDRRSSSRSRDHDDYYRGGSHDYYRGGSR 240
Query: 219 GSGRRDD---DRDHRLHGRGRRPRSRSPGRRGGRSRSPGARRRSPVRESSVERRAKIEQW 275
S R D D G R +R RSPVR+ S ERRA+IEQW
Sbjct: 241 RSSERHRSSYDSD-------------------GSRRRHRSRTRSPVRDGSEERRAQIEQW 281
Query: 276 NREKEQA 282
NRE+E A
Sbjct: 282 NREREAA 288
>sp|Q9S709|U2AFA_ARATH Splicing factor U2af small subunit A OS=Arabidopsis thaliana
GN=U2AF35A PE=1 SV=1
Length = 296
Score = 356 bits (914), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 196/287 (68%), Positives = 213/287 (74%), Gaps = 13/287 (4%)
Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
Query: 61 GVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120
GVD QGQ LDPRKIQ+HFEDF+EDLFEEL K+GEIESLNICDNLADHM+GNVYVQF+EE+
Sbjct: 61 GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120
Query: 121 HAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
AA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K +SREL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180
Query: 181 RRRLFGRSRRRRSRSRSRSR-----SPHKYRGGYEERSHGGGRGSGRRDDDRDHRLHGRG 235
RR+LFGR RR R SP R +R R RD DR+ HG G
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDN--DRRDPSHREFSHRDRDREFYRHGSG 238
Query: 236 RRPRSRSP-----GRRGGRSRSPGARRRSPVRESSV-ERRAKIEQWN 276
+R RS G RG R SP ERRA+IEQWN
Sbjct: 239 KRSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWN 285
>sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Oryza sativa subsp.
japonica GN=U2AF35B PE=2 SV=1
Length = 304
Score = 339 bits (869), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 148/185 (80%), Positives = 172/185 (92%)
Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPT++L+NMYQRPDMITP
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60
Query: 61 GVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120
GVD QGQ +DP K+Q+HFEDFYED++EELSK+GE+E+LN+CDNLADHM+GNVYVQFREEE
Sbjct: 61 GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120
Query: 121 HAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
A A L GRFY+GRPIIV++SPVTDFREATCRQ+EEN CNRGGYCNFMH+K+I REL
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180
Query: 181 RRRLF 185
RR+L+
Sbjct: 181 RRKLY 185
>sp|Q7TP17|U2AF4_RAT Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4
PE=2 SV=1
Length = 220
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 116/200 (58%), Positives = 149/200 (74%), Gaps = 1/200 (0%)
Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query: 61 GVDPQGQALDPRKIQDHFEDFYEDLFEELS-KYGEIESLNICDNLADHMVGNVYVQFREE 119
D + ++Q+H+++F+E++F EL KYGEIE +N+CDNL DH+VGNVYV+FR E
Sbjct: 61 TADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 120 EHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRE 179
E A A+ LN R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISR
Sbjct: 121 EDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRN 180
Query: 180 LRRRLFGRSRRRRSRSRSRS 199
LRR+L+GR R RS RS +
Sbjct: 181 LRRQLYGRGPRHRSPPRSHT 200
>sp|Q8BGJ9|U2AF4_MOUSE Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1
SV=1
Length = 220
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 116/200 (58%), Positives = 149/200 (74%), Gaps = 1/200 (0%)
Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query: 61 GVDPQGQALDPRKIQDHFEDFYEDLFEELS-KYGEIESLNICDNLADHMVGNVYVQFREE 119
D + ++Q+H+++F+E++F EL KYGEIE +N+CDNL DH+VGNVYV+FR E
Sbjct: 61 TADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 120 EHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRE 179
E A A+ LN R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISR
Sbjct: 121 EDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRN 180
Query: 180 LRRRLFGRSRRRRSRSRSRS 199
LRR+L+GR R RS RS +
Sbjct: 181 LRRQLYGRGPRHRSPPRSHT 200
>sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=1
SV=4
Length = 239
Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 113/186 (60%), Positives = 144/186 (77%), Gaps = 1/186 (0%)
Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P +
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60
Query: 61 GVDPQGQALDPRKIQDHFEDFYEDLFEELS-KYGEIESLNICDNLADHMVGNVYVQFREE 119
D A+ ++Q+H+++F+E++F E+ KYGE+E +N+CDNL DH+VGNVYV+FR E
Sbjct: 61 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 120 EHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRE 179
E A A+ +LN R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISRE
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 180 LRRRLF 185
LRR L+
Sbjct: 181 LRRELY 186
>sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1
SV=3
Length = 240
Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 113/186 (60%), Positives = 144/186 (77%), Gaps = 1/186 (0%)
Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P +
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60
Query: 61 GVDPQGQALDPRKIQDHFEDFYEDLFEEL-SKYGEIESLNICDNLADHMVGNVYVQFREE 119
D A+ ++Q+H+++F+E++F E+ KYGE+E +N+CDNL DH+VGNVYV+FR E
Sbjct: 61 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 120 EHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRE 179
E A A+ +LN R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISRE
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 180 LRRRLF 185
LRR L+
Sbjct: 181 LRRELY 186
>sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2
SV=1
Length = 237
Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 113/186 (60%), Positives = 144/186 (77%), Gaps = 1/186 (0%)
Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P +
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60
Query: 61 GVDPQGQALDPRKIQDHFEDFYEDLFEELS-KYGEIESLNICDNLADHMVGNVYVQFREE 119
D A+ ++Q+H+++F+E++F E+ KYGE+E +N+CDNL DH+VGNVYV+FR E
Sbjct: 61 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 120 EHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRE 179
E A A+ +LN R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISRE
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 180 LRRRLF 185
LRR L+
Sbjct: 181 LRRELY 186
>sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster
GN=U2af38 PE=1 SV=2
Length = 264
Score = 241 bits (615), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 111/188 (59%), Positives = 138/188 (73%), Gaps = 3/188 (1%)
Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSR+H KP+ S T+LL N+Y P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAK 60
Query: 61 GVDPQGQA--LDPRKIQDHFEDFYEDLFEELS-KYGEIESLNICDNLADHMVGNVYVQFR 117
D + ++Q+H+++F+ED+F E KYGEIE +N+CDNL DH+VGNVY++FR
Sbjct: 61 SADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 120
Query: 118 EEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKIS 177
E A A +LN R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK IS
Sbjct: 121 NEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPIS 180
Query: 178 RELRRRLF 185
RELRR L+
Sbjct: 181 RELRRYLY 188
>sp|Q3T127|U2AF4_BOVIN Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2
SV=1
Length = 220
Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 109/186 (58%), Positives = 142/186 (76%), Gaps = 1/186 (0%)
Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query: 61 GVDPQGQALDPRKIQDHFEDFYEDLFEELS-KYGEIESLNICDNLADHMVGNVYVQFREE 119
D + ++Q+H+++F+E++F EL KYGEIE +N+CDNL DH+VGNVYV+FR E
Sbjct: 61 TADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 120 EHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRE 179
E A A+ LN R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISR+
Sbjct: 121 EDAERAVVELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRD 180
Query: 180 LRRRLF 185
LRR+L+
Sbjct: 181 LRRQLY 186
>sp|Q09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAP8A3.06 PE=1 SV=2
Length = 216
Score = 234 bits (596), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 107/190 (56%), Positives = 138/190 (72%), Gaps = 5/190 (2%)
Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
MA HLASI+GTE+D+VNC FY+KIGACRHG+RCSR H KP+ S T+L NMY+ P
Sbjct: 1 MASHLASIYGTEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYKNPIH--- 57
Query: 61 GVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120
+P G+ R++ + F+ FYED+F E SKYGE+E L +CDN+ DH+VGNVYV+F+ EE
Sbjct: 58 --EPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEE 115
Query: 121 HAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
A NA+ +LN R+Y+ RP+ + SPVTDFREA CRQ+E + C RGG CNFMH KK S +L
Sbjct: 116 SAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQL 175
Query: 181 RRRLFGRSRR 190
R L R+
Sbjct: 176 LRDLVLAQRK 185
>sp|Q8WU68|U2AF4_HUMAN Splicing factor U2AF 26 kDa subunit OS=Homo sapiens GN=U2AF1L4 PE=1
SV=2
Length = 220
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 104/186 (55%), Positives = 138/186 (74%), Gaps = 1/186 (0%)
Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
MAE+LASIFGTEKD+VNC FYFKIG CRHGDRCSRLH KP+ S T++L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query: 61 GVDPQGQALDPRKIQDHFEDFYEDLFEELS-KYGEIESLNICDNLADHMVGNVYVQFREE 119
D + ++Q+H++ F+E++F EL KYGEIE +N+CDNL DH+VGNVYV+FR E
Sbjct: 61 TADGSHCHVSDVEVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 120 EHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRE 179
E A+ L+ R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ IS+
Sbjct: 121 EDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQN 180
Query: 180 LRRRLF 185
L+R+L+
Sbjct: 181 LQRQLY 186
>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2
SV=2
Length = 479
Score = 148 bits (373), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 94/166 (56%), Gaps = 4/166 (2%)
Query: 12 EKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMIT---PGVDPQGQA 68
EKDR NCPFY K GACR GDRCSR H P+ SPTLL+ +M+ M DP
Sbjct: 171 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASL 230
Query: 69 -LDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALR 127
+ F DFYED+ E G++ + NL H+ GNVYVQ++ EE AL
Sbjct: 231 EYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALS 290
Query: 128 NLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHL 173
NGR+YAGR + +F PVT ++ A C +E C RG +CNF+H+
Sbjct: 291 LFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHV 336
>sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1
SV=2
Length = 482
Score = 147 bits (372), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 94/167 (56%), Gaps = 4/167 (2%)
Query: 11 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMIT---PGVDPQGQ 67
EKDR NCPFY K GACR GDRCSR H P+ SPTLL+ +M+ M DP
Sbjct: 165 MEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDAS 224
Query: 68 A-LDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANAL 126
+ F DFYED+ E G++ + NL H+ GNVYVQ++ EE AL
Sbjct: 225 LEYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAAL 284
Query: 127 RNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHL 173
NGR+YAGR + +F PVT ++ A C +E C RG +CNF+H+
Sbjct: 285 SLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHV 331
>sp|Q9SY74|C3H5_ARATH Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis
thaliana GN=At1g10320 PE=2 SV=2
Length = 757
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 106/167 (63%), Gaps = 5/167 (2%)
Query: 9 FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQA 68
FGTE+D+ +CPF+ K GACR G RCSR+H P+ S TLL+ NMY P IT D +G
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLE 294
Query: 69 LDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRN 128
+ + +E+FYED+ E KYGE+ + +C N + H+ GNVYV +R E A A ++
Sbjct: 295 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 354
Query: 129 LNGRFYAGRPIIVDFSPVTDFREATCRQYEEN---VCNRGGYCNFMH 172
+NGR++AG+ + +F ++ ++ A C +Y ++ C+RG CNF+H
Sbjct: 355 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIH 401
>sp|Q6YVX9|C3H16_ORYSJ Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa
subsp. japonica GN=Os02g0557500 PE=2 SV=2
Length = 678
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 99/164 (60%), Gaps = 5/164 (3%)
Query: 12 EKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDP 71
++D+ +CPF+ K GACR G RCSR+H P S TLL+ NMY P + +G
Sbjct: 163 QQDKAHCPFHLKTGACRFGVRCSRVHFYPDKSCTLLMRNMYSGPGLALE--QDEGLECTD 220
Query: 72 RKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNG 131
+I+ +E+FYED+ E K+GE+ + +C N + H+ GNVYV ++ + A A ++NG
Sbjct: 221 EEIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSMNG 280
Query: 132 RFYAGRPIIVDFSPVTDFREATCRQYEEN---VCNRGGYCNFMH 172
R++AG+ I +F VT ++ A C +Y + C+RG CNF+H
Sbjct: 281 RYFAGKQITCEFVAVTRWKVAICGEYMRSRFKTCSRGIACNFIH 324
>sp|Q62377|U2AFM_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=2
SV=1
Length = 462
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 114/245 (46%), Gaps = 26/245 (10%)
Query: 12 EKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMIT---PGVDPQGQA 68
EKDR NCPFY K GACR GDRCSR H P+ SPTLL+ M+ M DP
Sbjct: 170 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKGMFTTFGMEQCRRDDYDPDSSL 229
Query: 69 -LDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALR 127
+I F DFY D+ E G++ + NL H+ GNVYVQ++ EE A
Sbjct: 230 EFSEEEIYQQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFS 289
Query: 128 NLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHL----KKISRELRRR 183
NGR+YAGR + +F PVT ++ A C +E C RG +CNF+H+ R+ R
Sbjct: 290 VFNGRWYAGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHVFRNPNNEYRDANRD 349
Query: 184 LF------GRSRRRRSRSRSRSRSPHKYRGG------------YEERSHGGGRGSGRRDD 225
L+ S + S R R+ +Y G Y+ + S R
Sbjct: 350 LYPSPDWTSSSFGKNSERRERASHYDEYYGRSRRRRRSPSPDFYKRNGESDRKSSSRHRV 409
Query: 226 DRDHR 230
+ HR
Sbjct: 410 KKSHR 414
>sp|Q64707|U2AFL_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Mus musculus GN=Zrsr1 PE=2
SV=1
Length = 428
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 91/166 (54%), Gaps = 4/166 (2%)
Query: 12 EKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDP----QGQ 67
EK R +CPFY K GACR G+RCSR H P+ SPTLL+ +M+ M D
Sbjct: 157 EKYRPSCPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRRDDYDSDANL 216
Query: 68 ALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALR 127
+ F DFY D+ E G++ + NL H+ GNVYVQ++ EE AL
Sbjct: 217 EYSEEETYQQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALS 276
Query: 128 NLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHL 173
NGR+YAGR + +F PVT ++ A C +E C +G +CNF+H+
Sbjct: 277 LFNGRWYAGRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHV 322
>sp|Q29350|U2AF1_PIG Splicing factor U2AF 35 kDa subunit (Fragment) OS=Sus scrofa
GN=U2AF1 PE=2 SV=3
Length = 82
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 61/82 (74%)
Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query: 61 GVDPQGQALDPRKIQDHFEDFY 82
D + ++Q+H+++F+
Sbjct: 61 TADGSHCHVSDVEVQEHYDNFF 82
>sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans
GN=uaf-1 PE=2 SV=2
Length = 496
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 70 DPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHM---VGNVYVQFREEEHAANAL 126
D K D +E+ ED+ +E SKYG + SL I DH VG V+V+F A
Sbjct: 409 DELKADDEYEEILEDVRDECSKYGIVRSLEIPRPYEDHPVPGVGKVFVEFASTSDCQRAQ 468
Query: 127 RNLNGRFYAGRPIIVDFSPV 146
L GR +A R ++ + V
Sbjct: 469 AALTGRKFANRTVVTSYYDV 488
>sp|Q8BGC0|HTSF1_MOUSE HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1
SV=1
Length = 757
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVD 142
EDL E SK+G+I L + D H G V FRE E A + ++ L+GR++ GR I
Sbjct: 290 EDLRVECSKFGQIRKLLLFDR---HPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQ 346
Query: 143 -FSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRR--RLFGRSRRRRSRSRSRS 199
+ TD++ E G+ F++ + SR LRR + G R SR R S
Sbjct: 347 AWDGTTDYQ--VEETSREREERLRGWEAFLNAPEASRGLRRMDSIAGSERPGPSRMRHFS 404
Query: 200 RSPHKYRGGYEERSHG 215
P +E + G
Sbjct: 405 EHPSMSNMKAQEATTG 420
>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae
GN=uaf-1 PE=3 SV=2
Length = 488
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 78 FEDFYEDLFEELSKYGEIESLNICDNLADHM---VGNVYVQFREEEHAANALRNLNGRFY 134
+E+ ED+ EE SKYG + SL I DH VG V+V+F A L GR +
Sbjct: 408 YEEILEDVREECSKYGIVRSLEIPRPYDDHPVPGVGKVFVEFATTSDCQRAQAALTGRKF 467
Query: 135 AGRPIIVDFSPV 146
A R ++ + V
Sbjct: 468 ANRTVVTSYYDV 479
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 15/104 (14%)
Query: 84 DLFEELSKYGEIESLNIC-DNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVD 142
DL ++YGE+ +N+ D G ++ + ++ A+ NLNG GR + VD
Sbjct: 51 DLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVD 110
Query: 143 F------------SPVTDFREA--TCRQYEENVCNRGGYCNFMH 172
+ REA C +++ CNRG C + H
Sbjct: 111 HVSKYKKKEEEDEEELQKKREARGVCYAFQKGECNRGASCRYSH 154
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 83 EDLFEELSKYGEIESLNI-CDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIV 141
EDL E +YG I + I D G YVQF + A +AL NLN ++ GR I +
Sbjct: 24 EDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEI 83
Query: 142 DFS 144
F+
Sbjct: 84 QFA 86
>sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2
SV=1
Length = 754
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVD 142
EDL E SK+G+I L + D H G V FR+ E A ++ L+GR++ GR I
Sbjct: 289 EDLRVECSKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQ 345
Query: 143 -FSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRRLFGRSRRRRSRSRSRSRS 201
+ TD++ E G+ F++ + +R LRR + R SR+R S
Sbjct: 346 AWDGTTDYQ--VEETSREREERLRGWEAFLNAPEANRGLRRSDSVSASERAGPSRARHFS 403
Query: 202 PH 203
H
Sbjct: 404 EH 405
>sp|O43719|HTSF1_HUMAN HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1
Length = 755
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVD 142
EDL E SK+G+I L + D H G V FR+ E A ++ L+GR++ GR I
Sbjct: 289 EDLRVECSKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQ 345
Query: 143 -FSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRRLFGRSRRRRSRSRSRSRS 201
+ TD++ E G+ F++ + +R LRR + R SR+R S
Sbjct: 346 AWDGTTDYQ--VEETSREREERLRGWEAFLNAPEANRGLRRSDSVSASERAGPSRARHFS 403
Query: 202 PH 203
H
Sbjct: 404 EH 405
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 83 EDLFEELSKYGEIESLNI-CDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIV 141
EDL E +YG I + + D G YVQF + A +AL NL+ ++ GR I +
Sbjct: 24 EDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEI 83
Query: 142 DFS 144
F+
Sbjct: 84 QFA 86
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 83 EDLFEELSKYGEIESLNI-CDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIV 141
EDL E +YG I + + D G YVQF + A +AL NL+ ++ GR I +
Sbjct: 24 EDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEI 83
Query: 142 DFS 144
F+
Sbjct: 84 QFA 86
>sp|O13829|RU17_SCHPO U1 small nuclear ribonucleoprotein 70 kDa homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=usp101 PE=1 SV=1
Length = 261
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 84 DLFEELSKYGEIESLNICDN-LADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVD 142
D+ E ++YG IE + + N + +G +V F E A + G GR I+VD
Sbjct: 115 DIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVD 174
Query: 143 F 143
Sbjct: 175 V 175
>sp|Q05AT9|U1SBP_XENLA U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Xenopus
laevis GN=snrnp35 PE=2 SV=1
Length = 272
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 83 EDLFEELSKYGEIESLNIC-DNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIV 141
E L E S+YG+I+ + + D + G ++++++E A R+ N R + V
Sbjct: 65 EKLKEVFSRYGDIKRIRLVRDFITGFSKGYAFIEYKQENAIMKAHRDANKLVIDQREVFV 124
Query: 142 DF 143
DF
Sbjct: 125 DF 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,100,204
Number of Sequences: 539616
Number of extensions: 6272594
Number of successful extensions: 38480
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 890
Number of HSP's that attempted gapping in prelim test: 27644
Number of HSP's gapped (non-prelim): 6144
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)