Query 045807
Match_columns 320
No_of_seqs 353 out of 2079
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:41:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2202 U2 snRNP splicing fact 100.0 5.9E-51 1.3E-55 363.4 11.4 191 1-191 1-192 (260)
2 KOG0113 U1 small nuclear ribon 99.7 6.7E-17 1.4E-21 147.6 16.2 77 78-154 111-191 (335)
3 KOG4207 Predicted splicing fac 99.7 1.9E-16 4.2E-21 138.0 13.3 68 78-145 23-91 (256)
4 KOG0107 Alternative splicing f 99.7 5.3E-16 1.1E-20 132.2 12.9 63 81-147 23-85 (195)
5 PLN03134 glycine-rich RNA-bind 99.6 1.2E-14 2.6E-19 123.2 11.2 80 42-146 33-113 (144)
6 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1.9E-14 4.2E-19 144.5 12.1 95 41-150 407-505 (509)
7 TIGR01622 SF-CC1 splicing fact 99.6 1.7E-14 3.6E-19 143.2 11.0 95 39-151 358-452 (457)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 5.3E-14 1.2E-18 134.7 11.4 68 81-148 282-350 (352)
9 TIGR01645 half-pint poly-U bin 99.5 6.7E-14 1.5E-18 142.1 10.6 94 38-151 509-607 (612)
10 KOG0147 Transcriptional coacti 99.5 5.2E-14 1.1E-18 137.7 6.9 91 41-150 441-531 (549)
11 PF00076 RRM_1: RNA recognitio 99.5 4.7E-13 1E-17 97.7 8.9 59 82-140 12-70 (70)
12 PF13893 RRM_5: RNA recognitio 99.4 7.2E-13 1.6E-17 93.8 8.6 56 85-144 1-56 (56)
13 smart00361 RRM_1 RNA recogniti 99.4 7.3E-13 1.6E-17 98.4 8.9 63 80-142 4-70 (70)
14 KOG0153 Predicted RNA-binding 99.4 6.1E-13 1.3E-17 124.0 9.4 125 15-146 161-302 (377)
15 KOG0122 Translation initiation 99.4 8.9E-13 1.9E-17 117.9 9.3 69 79-147 200-269 (270)
16 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 1.1E-12 2.3E-17 125.7 10.7 80 43-147 3-83 (352)
17 TIGR01659 sex-lethal sex-letha 99.4 1.7E-12 3.7E-17 124.8 10.4 82 40-146 104-186 (346)
18 KOG0121 Nuclear cap-binding pr 99.4 1.5E-12 3.3E-17 105.9 6.6 78 42-144 35-113 (153)
19 TIGR01659 sex-lethal sex-letha 99.3 6.9E-12 1.5E-16 120.6 12.2 81 42-147 192-275 (346)
20 KOG0148 Apoptosis-promoting RN 99.3 1.9E-12 4.1E-17 117.3 7.7 66 83-148 77-143 (321)
21 KOG0415 Predicted peptidyl pro 99.3 2.3E-12 4.9E-17 120.4 5.9 64 83-146 254-318 (479)
22 PF14259 RRM_6: RNA recognitio 99.3 1.7E-11 3.6E-16 90.3 9.4 60 81-140 11-70 (70)
23 KOG1548 Transcription elongati 99.3 7.7E-12 1.7E-16 116.7 8.9 91 39-146 261-351 (382)
24 KOG0127 Nucleolar protein fibr 99.3 1.1E-11 2.5E-16 121.3 8.8 84 43-151 117-200 (678)
25 smart00362 RRM_2 RNA recogniti 99.3 3.9E-11 8.4E-16 86.4 9.4 60 82-142 13-72 (72)
26 KOG0126 Predicted RNA-binding 99.3 4.5E-13 9.8E-18 115.0 -1.1 84 37-145 29-113 (219)
27 KOG0125 Ataxin 2-binding prote 99.3 1.1E-11 2.4E-16 114.9 7.9 63 83-146 111-173 (376)
28 TIGR01622 SF-CC1 splicing fact 99.3 4.2E-11 9.1E-16 118.9 12.3 79 43-146 186-265 (457)
29 KOG0114 Predicted RNA-binding 99.2 3.2E-11 6.9E-16 94.9 7.7 82 40-148 15-96 (124)
30 KOG0130 RNA-binding protein RB 99.2 1.7E-11 3.7E-16 100.7 6.4 69 79-147 83-152 (170)
31 TIGR01645 half-pint poly-U bin 99.2 5.8E-11 1.3E-15 120.9 11.4 79 43-146 204-283 (612)
32 TIGR01628 PABP-1234 polyadenyl 99.2 5E-11 1.1E-15 121.6 10.6 84 42-150 284-367 (562)
33 PLN03120 nucleic acid binding 99.2 6.6E-11 1.4E-15 108.3 10.1 76 43-146 4-79 (260)
34 TIGR01642 U2AF_lg U2 snRNP aux 99.2 7.1E-11 1.5E-15 118.7 11.0 66 81-146 308-374 (509)
35 KOG0120 Splicing factor U2AF, 99.2 9E-11 2E-15 116.1 9.5 85 66-150 405-495 (500)
36 smart00360 RRM RNA recognition 99.2 1.7E-10 3.6E-15 82.7 8.3 62 81-142 9-71 (71)
37 KOG0105 Alternative splicing f 99.2 4.4E-11 9.6E-16 103.1 5.8 77 42-145 5-81 (241)
38 cd00590 RRM RRM (RNA recogniti 99.2 3.5E-10 7.7E-15 81.8 9.8 62 82-143 13-74 (74)
39 TIGR01628 PABP-1234 polyadenyl 99.1 1.4E-10 3E-15 118.4 10.1 76 45-145 2-78 (562)
40 TIGR01648 hnRNP-R-Q heterogene 99.1 1.9E-10 4E-15 116.9 10.6 83 37-144 52-135 (578)
41 KOG0145 RNA-binding protein EL 99.1 2.3E-10 5.1E-15 103.3 9.0 65 82-146 55-120 (360)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 2.4E-10 5.3E-15 114.7 10.1 75 42-146 1-77 (481)
43 PLN03121 nucleic acid binding 99.1 2.7E-10 5.9E-15 102.9 9.2 75 43-145 5-79 (243)
44 TIGR01648 hnRNP-R-Q heterogene 99.1 3E-10 6.5E-15 115.4 10.0 61 81-148 246-308 (578)
45 KOG0127 Nucleolar protein fibr 99.1 2E-10 4.4E-15 112.6 8.3 80 42-146 291-377 (678)
46 PLN03213 repressor of silencin 99.1 2E-10 4.2E-15 111.6 8.0 75 43-145 10-86 (759)
47 KOG0131 Splicing factor 3b, su 99.1 1.7E-10 3.7E-15 99.3 6.8 79 42-145 8-87 (203)
48 COG0724 RNA-binding proteins ( 99.1 3.4E-10 7.4E-15 101.5 9.1 78 43-145 115-193 (306)
49 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 5.2E-10 1.1E-14 112.3 10.9 62 82-147 290-351 (481)
50 KOG4206 Spliceosomal protein s 99.1 4.9E-10 1.1E-14 99.5 8.2 82 42-146 8-89 (221)
51 KOG0111 Cyclophilin-type pepti 99.0 1.7E-10 3.6E-15 102.0 4.8 72 80-151 22-94 (298)
52 KOG0108 mRNA cleavage and poly 99.0 6.7E-10 1.5E-14 109.1 8.1 81 44-149 19-100 (435)
53 KOG0148 Apoptosis-promoting RN 99.0 1.4E-09 3E-14 98.9 9.0 62 81-147 177-238 (321)
54 KOG0149 Predicted RNA-binding 99.0 8.7E-10 1.9E-14 98.4 6.4 67 79-146 23-90 (247)
55 KOG0117 Heterogeneous nuclear 99.0 2E-09 4.4E-14 103.5 8.5 63 79-148 270-332 (506)
56 KOG0110 RNA-binding protein (R 99.0 1.3E-09 2.8E-14 109.9 7.3 117 3-148 575-694 (725)
57 KOG0145 RNA-binding protein EL 98.9 3.3E-09 7.1E-14 96.0 9.0 64 83-146 293-357 (360)
58 KOG0117 Heterogeneous nuclear 98.9 4.1E-09 9E-14 101.4 9.1 67 79-145 94-162 (506)
59 KOG0123 Polyadenylate-binding 98.9 4.4E-09 9.6E-14 102.0 8.9 65 83-149 91-155 (369)
60 KOG1996 mRNA splicing factor [ 98.9 2.8E-09 6.1E-14 97.8 6.0 72 79-150 297-370 (378)
61 KOG0124 Polypyrimidine tract-b 98.8 2.3E-09 4.9E-14 100.9 4.0 63 82-144 127-190 (544)
62 KOG0109 RNA-binding protein LA 98.8 5.3E-09 1.2E-13 95.9 6.1 57 83-146 93-149 (346)
63 KOG0109 RNA-binding protein LA 98.8 6.2E-09 1.3E-13 95.5 6.4 59 82-147 16-74 (346)
64 KOG0144 RNA-binding protein CU 98.8 5.6E-09 1.2E-13 100.1 6.2 72 80-151 136-210 (510)
65 KOG0110 RNA-binding protein (R 98.8 8.3E-09 1.8E-13 104.2 7.7 70 76-145 523-596 (725)
66 KOG0147 Transcriptional coacti 98.8 9.2E-09 2E-13 101.3 5.8 71 76-146 286-357 (549)
67 KOG0124 Polypyrimidine tract-b 98.8 2.4E-08 5.2E-13 94.1 8.2 91 39-149 442-537 (544)
68 KOG4212 RNA-binding protein hn 98.7 7.3E-08 1.6E-12 92.7 8.7 78 42-144 43-121 (608)
69 KOG0131 Splicing factor 3b, su 98.7 3.3E-08 7.1E-13 85.3 5.7 66 83-148 111-178 (203)
70 KOG4208 Nucleolar RNA-binding 98.7 5.5E-08 1.2E-12 85.4 6.9 69 79-147 60-130 (214)
71 KOG0123 Polyadenylate-binding 98.6 5.1E-08 1.1E-12 94.6 6.2 65 80-146 10-74 (369)
72 KOG0132 RNA polymerase II C-te 98.6 1.2E-07 2.6E-12 96.7 8.6 80 42-151 420-499 (894)
73 KOG4454 RNA binding protein (R 98.6 2.9E-08 6.2E-13 87.9 3.1 81 40-146 6-86 (267)
74 KOG0146 RNA-binding protein ET 98.6 5.2E-08 1.1E-12 88.6 4.7 66 83-148 300-366 (371)
75 KOG0144 RNA-binding protein CU 98.6 9.8E-08 2.1E-12 91.8 6.7 67 80-146 46-116 (510)
76 KOG0533 RRM motif-containing p 98.4 1.2E-06 2.6E-11 80.0 8.2 70 79-148 94-163 (243)
77 KOG0146 RNA-binding protein ET 98.4 7.1E-07 1.5E-11 81.3 6.6 69 81-149 32-103 (371)
78 KOG4212 RNA-binding protein hn 98.4 5.5E-07 1.2E-11 86.8 6.1 73 43-144 536-608 (608)
79 KOG4209 Splicing factor RNPS1, 98.3 1.3E-06 2.8E-11 79.7 6.0 63 83-146 116-179 (231)
80 KOG4660 Protein Mei2, essentia 98.2 6.3E-07 1.4E-11 88.7 3.5 55 82-140 89-143 (549)
81 KOG4661 Hsp27-ERE-TATA-binding 98.1 5.3E-06 1.1E-10 82.4 7.2 64 82-145 419-483 (940)
82 KOG0106 Alternative splicing f 98.1 2.3E-06 5E-11 76.7 4.1 59 81-146 14-72 (216)
83 COG5175 MOT2 Transcriptional r 98.1 5.7E-06 1.2E-10 77.6 6.6 85 86-175 138-226 (480)
84 KOG2314 Translation initiation 98.1 1.6E-05 3.4E-10 79.1 9.1 65 80-144 76-141 (698)
85 KOG1548 Transcription elongati 98.0 3E-05 6.5E-10 73.1 8.8 92 29-145 120-219 (382)
86 PF04059 RRM_2: RNA recognitio 98.0 5.9E-05 1.3E-09 59.6 8.9 83 44-149 2-89 (97)
87 KOG1190 Polypyrimidine tract-b 98.0 3E-05 6.6E-10 74.5 8.6 65 82-150 312-376 (492)
88 KOG4676 Splicing factor, argin 97.9 5.5E-06 1.2E-10 79.0 3.3 52 80-135 163-214 (479)
89 KOG0116 RasGAP SH3 binding pro 97.9 2.4E-05 5.2E-10 76.9 6.4 63 80-143 300-363 (419)
90 PF11608 Limkain-b1: Limkain b 97.8 7.4E-05 1.6E-09 57.1 7.0 72 45-146 4-76 (90)
91 KOG4205 RNA-binding protein mu 97.8 2.3E-05 4.9E-10 74.3 4.1 66 79-145 17-83 (311)
92 KOG0226 RNA-binding proteins [ 97.6 4.8E-05 1E-09 69.1 3.6 61 83-143 205-266 (290)
93 KOG1995 Conserved Zn-finger pr 97.6 4.7E-05 1E-09 72.1 3.6 66 81-146 79-153 (351)
94 KOG0151 Predicted splicing reg 97.6 0.00012 2.6E-09 74.7 6.5 66 81-146 187-256 (877)
95 KOG1457 RNA binding protein (c 97.6 0.00038 8.1E-09 62.4 8.8 65 83-147 49-118 (284)
96 KOG4205 RNA-binding protein mu 97.5 0.00012 2.7E-09 69.4 5.3 72 79-151 108-180 (311)
97 PF08952 DUF1866: Domain of un 97.4 0.00061 1.3E-08 57.5 7.9 59 79-145 47-105 (146)
98 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00069 1.5E-08 47.5 6.1 39 83-126 15-53 (53)
99 PF08777 RRM_3: RNA binding mo 97.3 0.00047 1E-08 55.3 5.2 58 82-144 15-77 (105)
100 KOG4211 Splicing factor hnRNP- 97.3 0.00084 1.8E-08 66.1 7.9 82 35-144 2-83 (510)
101 KOG0106 Alternative splicing f 97.3 0.00025 5.5E-09 63.7 4.0 54 81-141 112-165 (216)
102 KOG1855 Predicted RNA-binding 97.2 0.00038 8.3E-09 67.4 4.5 66 41-131 229-308 (484)
103 KOG1190 Polypyrimidine tract-b 97.2 0.0007 1.5E-08 65.3 5.9 63 82-147 164-228 (492)
104 KOG4206 Spliceosomal protein s 97.1 0.002 4.4E-08 57.7 7.8 60 81-144 159-219 (221)
105 KOG1456 Heterogeneous nuclear 97.1 0.0018 4E-08 61.9 7.8 64 82-149 136-201 (494)
106 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0029 6.3E-08 50.3 7.1 62 82-144 19-89 (100)
107 KOG0120 Splicing factor U2AF, 97.0 0.00098 2.1E-08 66.7 5.0 66 81-146 302-368 (500)
108 KOG4676 Splicing factor, argin 96.8 0.0017 3.6E-08 62.5 4.7 63 81-144 20-86 (479)
109 PF00642 zf-CCCH: Zinc finger 96.8 0.0003 6.6E-09 42.3 -0.2 24 15-38 3-26 (27)
110 KOG1456 Heterogeneous nuclear 96.6 0.0094 2E-07 57.2 8.6 61 82-146 302-362 (494)
111 KOG1365 RNA-binding protein Fu 96.5 0.0039 8.4E-08 59.9 5.4 73 78-150 290-365 (508)
112 KOG2416 Acinus (induces apopto 96.5 0.0017 3.7E-08 65.3 2.6 79 42-150 443-525 (718)
113 KOG4210 Nuclear localization s 96.4 0.0012 2.7E-08 62.1 1.3 70 77-147 194-264 (285)
114 KOG4307 RNA binding protein RB 96.4 0.0071 1.5E-07 62.0 6.6 65 79-143 878-943 (944)
115 KOG4211 Splicing factor hnRNP- 96.3 0.0095 2.1E-07 58.9 6.5 67 81-148 116-183 (510)
116 KOG1457 RNA binding protein (c 96.2 0.0055 1.2E-07 55.1 4.0 65 42-134 209-273 (284)
117 smart00356 ZnF_C3H1 zinc finge 96.2 0.0034 7.4E-08 37.1 1.8 22 16-38 5-26 (27)
118 PF04847 Calcipressin: Calcipr 96.1 0.017 3.6E-07 51.0 6.8 64 81-149 8-73 (184)
119 PF15023 DUF4523: Protein of u 96.1 0.028 6.1E-07 47.3 7.6 55 83-144 105-159 (166)
120 KOG2068 MOT2 transcription fac 95.9 0.0034 7.4E-08 59.4 1.3 83 87-174 99-185 (327)
121 KOG4368 Predicted RNA binding 95.8 0.024 5.3E-07 57.1 7.0 7 196-202 608-614 (757)
122 KOG3152 TBP-binding protein, a 95.0 0.014 3E-07 53.4 2.1 72 43-139 74-158 (278)
123 KOG4285 Mitotic phosphoprotein 95.0 0.049 1.1E-06 51.0 5.6 51 83-139 211-261 (350)
124 KOG2135 Proteins containing th 94.7 0.021 4.6E-07 56.3 2.5 58 83-146 388-445 (526)
125 KOG4574 RNA-binding protein (c 94.3 0.05 1.1E-06 57.1 4.5 66 81-151 311-378 (1007)
126 KOG0112 Large RNA-binding prot 94.1 0.096 2.1E-06 55.4 6.1 59 83-146 470-530 (975)
127 KOG0128 RNA-binding protein SA 94.0 0.0059 1.3E-07 63.8 -2.9 61 82-142 681-742 (881)
128 KOG0105 Alternative splicing f 93.3 0.24 5.2E-06 43.5 6.1 48 82-135 129-176 (241)
129 KOG0128 RNA-binding protein SA 92.9 0.029 6.2E-07 58.9 -0.0 70 77-146 745-814 (881)
130 KOG0115 RNA-binding protein p5 92.3 0.14 3E-06 47.0 3.5 61 83-143 46-110 (275)
131 PF15519 RBM39linker: linker b 91.3 0.091 2E-06 39.3 1.0 21 40-60 51-71 (73)
132 KOG2591 c-Mpl binding protein, 91.2 0.24 5.2E-06 50.0 4.1 56 82-143 189-248 (684)
133 PF08675 RNA_bind: RNA binding 91.2 0.5 1.1E-05 36.3 4.9 41 83-130 23-63 (87)
134 KOG0129 Predicted RNA-binding 90.9 0.63 1.4E-05 46.6 6.7 67 37-128 363-432 (520)
135 KOG1677 CCCH-type Zn-finger pr 90.7 0.14 2.9E-06 49.0 1.9 28 15-42 177-204 (332)
136 KOG0129 Predicted RNA-binding 90.6 1.2 2.6E-05 44.7 8.3 77 27-129 243-326 (520)
137 KOG1365 RNA-binding protein Fu 90.5 0.4 8.6E-06 46.5 4.7 62 77-139 170-235 (508)
138 KOG0112 Large RNA-binding prot 89.8 0.083 1.8E-06 55.9 -0.5 63 82-144 386-448 (975)
139 KOG4307 RNA binding protein RB 89.1 0.26 5.6E-06 51.0 2.5 68 81-148 447-515 (944)
140 PF11767 SET_assoc: Histone ly 88.3 2.4 5.1E-05 31.1 6.4 53 81-141 13-65 (66)
141 KOG0835 Cyclin L [General func 87.6 0.91 2E-05 43.3 4.9 28 107-135 171-198 (367)
142 PF03880 DbpA: DbpA RNA bindin 87.2 1.3 2.9E-05 32.8 4.7 54 83-144 16-74 (74)
143 KOG0151 Predicted splicing reg 86.0 0.9 2E-05 47.3 4.2 12 112-123 695-706 (877)
144 KOG4849 mRNA cleavage factor I 85.6 0.96 2.1E-05 43.4 3.9 64 80-143 92-158 (498)
145 KOG2193 IGF-II mRNA-binding pr 81.0 2 4.4E-05 42.3 4.1 59 83-148 16-77 (584)
146 PF07576 BRAP2: BRCA1-associat 78.5 8.8 0.00019 31.0 6.5 53 83-136 28-81 (110)
147 PF03467 Smg4_UPF3: Smg-4/UPF3 77.8 3.6 7.8E-05 35.9 4.4 43 108-150 54-101 (176)
148 KOG4210 Nuclear localization s 75.7 2.2 4.9E-05 40.2 2.7 63 84-146 104-167 (285)
149 PF03468 XS: XS domain; Inter 75.6 6.9 0.00015 31.9 5.2 39 83-123 32-70 (116)
150 KOG2193 IGF-II mRNA-binding pr 75.5 0.43 9.3E-06 46.8 -2.1 135 2-146 15-156 (584)
151 PF10309 DUF2414: Protein of u 74.6 9.4 0.0002 27.6 5.1 40 83-129 19-62 (62)
152 KOG2888 Putative RNA binding p 72.2 2 4.3E-05 41.1 1.4 12 108-119 159-170 (453)
153 KOG4213 RNA-binding protein La 70.9 9.6 0.00021 33.5 5.2 59 79-140 120-180 (205)
154 KOG2253 U1 snRNP complex, subu 70.8 6.4 0.00014 40.9 4.7 53 83-143 55-107 (668)
155 KOG4019 Calcineurin-mediated s 70.6 4.7 0.0001 35.4 3.2 59 83-146 30-89 (193)
156 PF03439 Spt5-NGN: Early trans 66.2 9.8 0.00021 28.9 3.9 37 94-134 33-69 (84)
157 KOG0804 Cytoplasmic Zn-finger 66.1 20 0.00043 35.8 6.8 53 83-136 89-142 (493)
158 KOG4660 Protein Mei2, essentia 65.9 14 0.0003 37.6 5.9 56 92-147 413-473 (549)
159 PF15513 DUF4651: Domain of un 65.5 19 0.00041 26.0 5.0 24 79-102 5-28 (62)
160 PF14608 zf-CCCH_2: Zinc finge 65.1 5 0.00011 21.8 1.5 18 18-38 2-19 (19)
161 PF10567 Nab6_mRNP_bdg: RNA-re 61.5 16 0.00034 34.5 5.0 63 83-145 30-106 (309)
162 KOG0796 Spliceosome subunit [R 60.4 5.6 0.00012 37.8 1.9 29 1-30 5-45 (319)
163 KOG1999 RNA polymerase II tran 59.4 21 0.00045 38.9 6.1 36 107-143 208-243 (1024)
164 KOG1039 Predicted E3 ubiquitin 52.4 6 0.00013 38.3 0.7 25 16-41 9-33 (344)
165 KOG1040 Polyadenylation factor 50.3 7.4 0.00016 37.4 1.0 24 17-40 107-130 (325)
166 COG5152 Uncharacterized conser 50.1 7 0.00015 34.8 0.7 27 15-41 141-167 (259)
167 smart00596 PRE_C2HC PRE_C2HC d 48.1 23 0.00051 26.1 3.1 59 83-144 2-62 (69)
168 PRK08559 nusG transcription an 47.7 59 0.0013 27.5 6.1 47 82-132 22-69 (153)
169 PF07530 PRE_C2HC: Associated 47.5 30 0.00065 25.3 3.6 59 83-144 2-62 (68)
170 KOG2185 Predicted RNA-processi 45.9 9 0.0002 37.7 0.8 29 11-40 136-164 (486)
171 KOG0156 Cytochrome P450 CYP2 s 45.0 57 0.0012 33.1 6.5 70 38-139 27-97 (489)
172 KOG0107 Alternative splicing f 43.9 1.1E+02 0.0023 27.1 6.9 7 46-52 13-19 (195)
173 PF02714 DUF221: Domain of unk 43.2 26 0.00057 33.0 3.6 34 112-147 1-34 (325)
174 PRK11634 ATP-dependent RNA hel 41.6 2.7E+02 0.0058 29.3 11.0 35 110-145 527-561 (629)
175 KOG1595 CCCH-type Zn-finger pr 40.6 15 0.00031 37.4 1.4 23 16-39 237-259 (528)
176 KOG2202 U2 snRNP splicing fact 37.9 13 0.00028 34.4 0.5 28 11-39 148-175 (260)
177 PF08544 GHMP_kinases_C: GHMP 36.8 1.6E+02 0.0035 21.2 6.5 44 83-130 37-80 (85)
178 KOG2891 Surface glycoprotein [ 35.4 7.6 0.00017 36.4 -1.4 64 82-145 175-266 (445)
179 KOG1677 CCCH-type Zn-finger pr 32.3 20 0.00044 34.0 0.9 28 15-42 132-160 (332)
180 COG0018 ArgS Arginyl-tRNA synt 32.2 1.9E+02 0.0042 30.1 8.0 63 80-148 58-128 (577)
181 CHL00123 rps6 ribosomal protei 29.4 1.8E+02 0.0038 22.6 5.7 51 78-128 23-81 (97)
182 KOG1040 Polyadenylation factor 29.3 20 0.00044 34.4 0.3 24 15-39 77-100 (325)
183 KOG0132 RNA polymerase II C-te 29.0 85 0.0019 33.6 4.7 11 43-53 108-118 (894)
184 KOG1108 Predicted heme/steroid 27.5 1.4E+02 0.0031 27.4 5.3 77 2-91 64-149 (281)
185 COG5507 Uncharacterized conser 27.5 77 0.0017 25.1 3.2 25 106-130 63-87 (117)
186 KOG2333 Uncharacterized conser 26.6 46 0.00099 33.8 2.2 26 15-40 114-139 (614)
187 KOG2187 tRNA uracil-5-methyltr 26.2 56 0.0012 33.4 2.8 37 108-144 62-98 (534)
188 KOG0113 U1 small nuclear ribon 25.6 93 0.002 29.6 3.9 45 83-131 79-126 (335)
189 PF11823 DUF3343: Protein of u 25.4 85 0.0018 22.8 3.0 27 110-136 2-28 (73)
190 KOG0796 Spliceosome subunit [R 25.3 44 0.00096 31.9 1.8 12 120-131 148-159 (319)
191 COG5084 YTH1 Cleavage and poly 24.3 46 0.001 31.4 1.7 28 15-43 104-131 (285)
192 PF08206 OB_RNB: Ribonuclease 24.0 24 0.00053 24.7 -0.1 37 108-145 7-44 (58)
193 KOG1813 Predicted E3 ubiquitin 23.3 27 0.00059 33.0 0.0 28 14-41 185-212 (313)
194 PRK11230 glycolate oxidase sub 23.0 1.4E+02 0.003 30.5 5.0 47 84-130 205-255 (499)
195 COG1369 POP5 RNase P/RNase MRP 22.8 3.9E+02 0.0085 22.0 6.7 66 79-146 36-102 (124)
196 COG5470 Uncharacterized conser 22.4 2.5E+02 0.0054 22.1 5.1 51 76-127 16-71 (96)
197 PF14111 DUF4283: Domain of un 22.4 49 0.0011 27.2 1.4 60 78-145 31-90 (153)
198 KOG0862 Synaptobrevin/VAMP-lik 21.7 57 0.0012 29.5 1.7 32 81-119 87-119 (216)
199 PRK13259 regulatory protein Sp 21.6 1.5E+02 0.0032 23.3 3.8 25 94-118 2-27 (94)
200 PF08156 NOP5NT: NOP5NT (NUC12 21.5 53 0.0012 23.9 1.3 20 111-130 46-65 (67)
201 PF04026 SpoVG: SpoVG; InterP 21.3 1.6E+02 0.0036 22.4 4.0 25 94-118 2-27 (84)
202 PF12687 DUF3801: Protein of u 21.0 2.7E+02 0.0059 24.8 5.9 56 82-138 44-99 (204)
203 KOG1134 Uncharacterized conser 20.1 2.5E+02 0.0053 30.2 6.3 38 108-147 304-341 (728)
No 1
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.9e-51 Score=363.45 Aligned_cols=191 Identities=66% Similarity=1.157 Sum_probs=183.4
Q ss_pred CHHHHHHhhCCCCCCccccCceeccCCCCCCccccCCCCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHH
Q 045807 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFED 80 (320)
Q Consensus 1 ~~~~~~~~~~~~~~~~~c~f~~k~g~cr~g~~cs~~h~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~ 80 (320)
|||+||+|||||+|++||+|||||||||||++|+++|++|+.|+||+|+|||++|.+..+..++..+.+++++||.+|++
T Consensus 1 mae~lasifgtekdKv~c~fy~k~gacR~gdrcsR~h~kpt~s~t~ll~nmyq~P~~~~~~~d~~~~~~~de~~q~~~de 80 (260)
T KOG2202|consen 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHEKPTFSQTVLLKNMYQNPENSWERRDAQGQFLTDEELQRHEDE 80 (260)
T ss_pred CchHHHHHhcccccccccchHHhhcccccccHHHHhhcccccchHHHHHHHHhCCCCCchhhhhccccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999877766667889999999999999
Q ss_pred HHHHHHHHHh-cCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCCcchhhhhcccc
Q 045807 81 FYEDLFEELS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEE 159 (320)
Q Consensus 81 ~eedL~~~F~-k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~~~~~~~~~~ 159 (320)
+++||+.+|+ |||+|+.+.|+.+...+..|.|||.|..+++|++|++.|||.||.|++|.+++++++.|++++|++++.
T Consensus 81 fyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~C~~~e~ 160 (260)
T KOG2202|consen 81 FYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAICGQFER 160 (260)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhhhccccc
Confidence 9999999999 999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccccccccCHHHHHhhhCCCccC
Q 045807 160 NVCNRGGYCNFMHLKKISRELRRRLFGRSRRR 191 (320)
Q Consensus 160 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (320)
+.|++|+.|||||++..+..+.+.++......
T Consensus 161 ~~C~rG~~CnFmH~k~~sr~L~r~l~~~~~~~ 192 (260)
T KOG2202|consen 161 TECSRGGACNFMHVKRLSRSLRRELYGRQRKR 192 (260)
T ss_pred ccCCCCCcCcchhhhhhhHHHHHHhhhhhhcc
Confidence 99999999999999999999999988876553
No 2
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=6.7e-17 Score=147.56 Aligned_cols=77 Identities=21% Similarity=0.424 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeec---CCCcchhh
Q 045807 78 FEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSP---VTDFREAT 153 (320)
Q Consensus 78 ~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~---~~~~~~~~ 153 (320)
|++.|..|+.+|++||+|+.|.|+. ..|++++|||||+|+++.+...|++..+|.+|+|+.|.|++-. ++.|.+..
T Consensus 111 ydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRTvkgW~PRR 190 (335)
T KOG0113|consen 111 YDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRTVKGWLPRR 190 (335)
T ss_pred ccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccccccccccccc
Confidence 5677899999999999999999998 4799999999999999999999999999999999999999974 45554433
Q ss_pred h
Q 045807 154 C 154 (320)
Q Consensus 154 ~ 154 (320)
.
T Consensus 191 L 191 (335)
T KOG0113|consen 191 L 191 (335)
T ss_pred c
Confidence 3
No 3
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.70 E-value=1.9e-16 Score=138.00 Aligned_cols=68 Identities=24% Similarity=0.457 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 78 FEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 78 ~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
|.|+-++|..+|+|||.|-+|.|+. ..|..++|||||.|....+|++|+++|+|.+|+|+.|.|+++.
T Consensus 23 yRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 23 YRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 3445599999999999999999997 6799999999999999999999999999999999999999974
No 4
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=5.3e-16 Score=132.19 Aligned_cols=63 Identities=30% Similarity=0.468 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 81 FYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
++.||+.+|.+||+|..|||..+. .|||||+|+++.+|++|+..|+|+.|.|..|.|+++...
T Consensus 23 ~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 23 TKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred chHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 358999999999999999998743 599999999999999999999999999999999998654
No 5
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.58 E-value=1.2e-14 Score=123.20 Aligned_cols=80 Identities=19% Similarity=0.307 Sum_probs=71.6
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
.+.+|+|.||... +++++|+++|++||+|+.|.|+. ..+++++|||||+|++.+
T Consensus 33 ~~~~lfVgnL~~~-------------------------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e 87 (144)
T PLN03134 33 MSTKLFIGGLSWG-------------------------TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEG 87 (144)
T ss_pred CCCEEEEeCCCCC-------------------------CCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHH
Confidence 4677999999753 23589999999999999999976 568999999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+|++|++.|||..|+|++|+|+|+..
T Consensus 88 ~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 88 AATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred HHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 99999999999999999999999854
No 6
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.56 E-value=1.9e-14 Score=144.53 Aligned_cols=95 Identities=24% Similarity=0.494 Sum_probs=80.0
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecC----CCCCceeEEEEEE
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDN----LADHMVGNVYVQF 116 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~----~tg~~~G~afV~F 116 (320)
.++++|+|.||+...++.+ .+.|++|.++|+++|++||.|+.|.|+.+ .++...|+|||+|
T Consensus 407 ~~s~v~~l~N~~~~~~l~~---------------d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F 471 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMD---------------DEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEY 471 (509)
T ss_pred CCceEEEeccCCchhHhcC---------------cchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEE
Confidence 3578899999986544321 24678899999999999999999999863 2345689999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeEEEEeecCCCcc
Q 045807 117 REEEHAANALRNLNGRFYAGRPIIVDFSPVTDFR 150 (320)
Q Consensus 117 ~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~ 150 (320)
++.++|++|+.+|||.+|+|++|.|.|+++..|.
T Consensus 472 ~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~~~ 505 (509)
T TIGR01642 472 ADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDCYK 505 (509)
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEEeCHHHhh
Confidence 9999999999999999999999999999876664
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.55 E-value=1.7e-14 Score=143.19 Aligned_cols=95 Identities=25% Similarity=0.453 Sum_probs=81.2
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
.+..+++|+|.||+.+.++. -.++|.++++||+++|++||.|+.|.|+.+ ...|+|||+|.+
T Consensus 358 ~~~~~~~l~l~n~~~~~~~~---------------~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~ 419 (457)
T TIGR01622 358 NNLATTCLVLSNMFDPATEE---------------EPNFDNEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFSS 419 (457)
T ss_pred CCCCCcEEEEecCCCCcccc---------------cchHHHHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEECC
Confidence 44678999999999764431 124678899999999999999999999754 346999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCCcch
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVTDFRE 151 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~~ 151 (320)
.++|.+|+++|||++|+|+.|.|.|+++..|..
T Consensus 420 ~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~~~ 452 (457)
T TIGR01622 420 VDAALAAFQALNGRYFGGKMITAAFVVNDVYDM 452 (457)
T ss_pred HHHHHHHHHHhcCcccCCeEEEEEEEcHHHHHh
Confidence 999999999999999999999999998877654
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.53 E-value=5.3e-14 Score=134.72 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 81 FYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
++++|.++|++||.|+.|.|+. ..|+.++|||||+|.+.++|.+|+..|||..|+|++|.|+|...+.
T Consensus 282 ~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 282 DETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 3589999999999999999987 4589999999999999999999999999999999999999987553
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.50 E-value=6.7e-14 Score=142.11 Aligned_cols=94 Identities=23% Similarity=0.395 Sum_probs=79.5
Q ss_pred CCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCC-----CCceeEE
Q 045807 38 TKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLA-----DHMVGNV 112 (320)
Q Consensus 38 ~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~t-----g~~~G~a 112 (320)
..|+.|+||+|.||+.+.+ + .++|++||+++|+|||.|+.|.|+.... .+..|.+
T Consensus 509 ~rp~~S~vVvL~NMv~~~e-----------------l---dedl~eDV~eEC~K~G~V~~v~I~~~~~~~~~~~~~~g~V 568 (612)
T TIGR01645 509 MRTNRSNVIVLRNMVTPQD-----------------I---DEFLEGEIREECGKFGVVDRVIINFEKQGEEEDAEIIVKI 568 (612)
T ss_pred cCCCCCCEEEEeCCCChHH-----------------h---HHHHHHHHHHHhhcCceeEEEEEecCCCCccccccceEEE
Confidence 3577899999999986432 2 2468899999999999999999987332 2446789
Q ss_pred EEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCCcch
Q 045807 113 YVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFRE 151 (320)
Q Consensus 113 fV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~~ 151 (320)
||+|.+.++|.+|++.|||++|+||+|.++|+....|..
T Consensus 569 fV~F~~~~~A~~A~~~LnGR~F~GR~V~a~~yd~~~f~~ 607 (612)
T TIGR01645 569 FVEFSDSMEVDRAKAALDGRFFGGRTVVAEAYDQILFDH 607 (612)
T ss_pred EEEECCHHHHHHHHHHhcCCeECCeEEEEEEcCHHHhhc
Confidence 999999999999999999999999999999998877743
No 10
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.47 E-value=5.2e-14 Score=137.70 Aligned_cols=91 Identities=33% Similarity=0.556 Sum_probs=81.7
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
.+|+|++|+|||+|.+++.+.|+. +|.+||.++|+|||+|..|.|.++. .|++||.|.+.+
T Consensus 441 i~t~C~lL~nMFdpstete~n~d~---------------eI~edV~Eec~k~g~v~hi~vd~ns----~g~VYvrc~s~~ 501 (549)
T KOG0147|consen 441 IPTQCLLLSNMFDPSTETEPNWDQ---------------EIREDVIEECGKHGKVCHIFVDKNS----AGCVYVRCPSAE 501 (549)
T ss_pred CccHHHHHhhcCCcccccCcchhh---------------HHHHHHHHHHHhcCCeeEEEEccCC----CceEEEecCcHH
Confidence 578999999999999988877754 6789999999999999999997653 499999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCCCcc
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVTDFR 150 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~ 150 (320)
+|..|+.+|||+||.|+.|++.|.+...+.
T Consensus 502 ~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~ 531 (549)
T KOG0147|consen 502 AAGTAVKALHGRWFAGRMITAKYLPLERYH 531 (549)
T ss_pred HHHHHHHHHhhhhhccceeEEEEeehhhhh
Confidence 999999999999999999999999876653
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.45 E-value=4.7e-13 Score=97.71 Aligned_cols=59 Identities=37% Similarity=0.589 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPII 140 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~ 140 (320)
+++|.++|++||+|..|.|..+.++..+|+|||+|.+.++|++|++.|||..|+|++|+
T Consensus 12 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 12 EEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp HHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 48999999999999999998767788999999999999999999999999999999985
No 12
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.43 E-value=7.2e-13 Score=93.83 Aligned_cols=56 Identities=36% Similarity=0.723 Sum_probs=51.0
Q ss_pred HHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 85 LFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 85 L~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
|.++|++||+|..|.+..+. .|+|||+|.+.++|..|+..|||..|.|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997643 489999999999999999999999999999999986
No 13
>smart00361 RRM_1 RNA recognition motif.
Probab=99.43 E-value=7.3e-13 Score=98.39 Aligned_cols=63 Identities=41% Similarity=0.786 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCCCeeEEE-Ee-cCCC--CCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 045807 80 DFYEDLFEELSKYGEIESLN-IC-DNLA--DHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVD 142 (320)
Q Consensus 80 ~~eedL~~~F~k~G~I~~v~-i~-~~~t--g~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~ 142 (320)
+|.+.|.++|++||+|..|. |+ .+.+ ++++|||||+|.+.++|.+|++.|||.+|+|++|.|.
T Consensus 4 ~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 4 DFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred hHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 44566666666999999996 43 3444 8899999999999999999999999999999999873
No 14
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=6.1e-13 Score=124.00 Aligned_cols=125 Identities=26% Similarity=0.427 Sum_probs=90.0
Q ss_pred CccccCceeccCCCCCCccccCCCCCCCCCeEEecCCCCCCCC-CCCCC--------CC-CCCCCChhhHhhhH------
Q 045807 15 RVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDM-ITPGV--------DP-QGQALDPRKIQDHF------ 78 (320)
Q Consensus 15 ~~~c~f~~k~g~cr~g~~cs~~h~~p~~S~tl~i~Nl~~~~~~-~~~~~--------~~-~~~~~d~~~i~~~~------ 78 (320)
+++|+||.+ |.|..|..|+|+|.+| ..-.|.+.||-..... .+|+. ++ .....+...|+.+|
T Consensus 161 p~Icsf~v~-geckRG~ec~yrhEkp-~d~~L~~qni~dryyg~ndPva~kil~ra~~~~~lepPeD~~I~tLyIg~l~d 238 (377)
T KOG0153|consen 161 PHICSFFVK-GECKRGAECPYRHEKP-PDDPLSLQNIKDRYYGLNDPVALKILNRAGSAGTLEPPEDTSIKTLYIGGLND 238 (377)
T ss_pred Cccccceee-ccccccccccccccCC-CCcchhhcccccccccccChHHHHHHhhcccccccCCCcccceeEEEeccccc
Confidence 899999998 8999999999999999 3344666776553311 11111 00 01111111222211
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHh-CCceeCCeeEEEEeecC
Q 045807 79 EDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNL-NGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~l-nG~~~~Gr~I~V~~~~~ 146 (320)
..++.||.+.|.+||+|..|.|... +|+|||+|.+.++|+.|...+ |...++|..|+|.|...
T Consensus 239 ~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 239 EVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred chhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 3567999999999999999998653 479999999999999887765 66778999999999876
No 15
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=8.9e-13 Score=117.86 Aligned_cols=69 Identities=25% Similarity=0.351 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 79 EDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
++.+++|.++|.+||.|..|.|.. ..||.++|||||.|.+.++|++||..|||.-++.-.|.|+|+.+.
T Consensus 200 d~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 200 DMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred ccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence 345689999999999999999987 679999999999999999999999999999999999999999764
No 16
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.41 E-value=1.1e-12 Score=125.71 Aligned_cols=80 Identities=23% Similarity=0.362 Sum_probs=71.4
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHH
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~ 121 (320)
..+|+|.||... .++++|+++|++||+|..|.|+. ..++.++|||||+|.+.++
T Consensus 3 ~~~l~V~nLp~~-------------------------~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~ 57 (352)
T TIGR01661 3 KTNLIVNYLPQT-------------------------MTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPED 57 (352)
T ss_pred CcEEEEeCCCCC-------------------------CCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHH
Confidence 568999999652 23589999999999999999986 5688999999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
|++||..|||..|.|++|.|.|+.+.
T Consensus 58 A~~Ai~~l~g~~l~g~~i~v~~a~~~ 83 (352)
T TIGR01661 58 AEKAVNSLNGLRLQNKTIKVSYARPS 83 (352)
T ss_pred HHHHHhhcccEEECCeeEEEEeeccc
Confidence 99999999999999999999998643
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.38 E-value=1.7e-12 Score=124.81 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=71.6
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~ 118 (320)
.....+|+|.||... .++++|+++|++||+|+.|.|+. ..++.++|||||+|.+
T Consensus 104 ~~~~~~LfVgnLp~~-------------------------~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~ 158 (346)
T TIGR01659 104 NNSGTNLIVNYLPQD-------------------------MTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGS 158 (346)
T ss_pred CCCCcEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEcc
Confidence 345678888888752 34589999999999999999976 5688999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+++|++||+.|||..|.+++|+|.|+..
T Consensus 159 ~e~A~~Ai~~LnG~~l~gr~i~V~~a~p 186 (346)
T TIGR01659 159 EADSQRAIKNLNGITVRNKRLKVSYARP 186 (346)
T ss_pred HHHHHHHHHHcCCCccCCceeeeecccc
Confidence 9999999999999999999999999753
No 18
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.5e-12 Score=105.92 Aligned_cols=78 Identities=27% Similarity=0.449 Sum_probs=70.3
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNIC-DNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~-~~~tg~~~G~afV~F~~~e 120 (320)
.|.||+|.||... ++||.|.++|+++|+|..|.|- ...+..+.||+||+|...+
T Consensus 35 ~S~tvyVgNlSfy-------------------------ttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~ 89 (153)
T KOG0121|consen 35 KSCTVYVGNLSFY-------------------------TTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRD 89 (153)
T ss_pred hcceEEEeeeeee-------------------------ecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecch
Confidence 6889999999853 4568999999999999999884 4566778999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEee
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
+|+.|++-++|..++.++|.|+|-
T Consensus 90 dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 90 DAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hHHHHHHHhccCcccccceeeecc
Confidence 999999999999999999999995
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.35 E-value=6.9e-12 Score=120.64 Aligned_cols=81 Identities=26% Similarity=0.380 Sum_probs=70.0
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
.+.+|+|.||... +++++|+++|++||+|+.|.|+. ..+++++|||||+|++.+
T Consensus 192 ~~~~lfV~nLp~~-------------------------vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e 246 (346)
T TIGR01659 192 KDTNLYVTNLPRT-------------------------ITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKRE 246 (346)
T ss_pred ccceeEEeCCCCc-------------------------ccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHH
Confidence 3567999999752 23589999999999999999986 558899999999999999
Q ss_pred HHHHHHHHhCCceeCC--eeEEEEeecCC
Q 045807 121 HAANALRNLNGRFYAG--RPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~G--r~I~V~~~~~~ 147 (320)
+|++||+.||+..|.| ++|.|.|+...
T Consensus 247 ~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 247 EAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 9999999999999876 78999998654
No 20
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.9e-12 Score=117.26 Aligned_cols=66 Identities=24% Similarity=0.453 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 83 EDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
++|++.|.+||+|.+++|++ ..|++++||+||.|-+.++|+.||..|||.||.+|.|...|++.+.
T Consensus 77 e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 77 EKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 89999999999999999997 6799999999999999999999999999999999999999997654
No 21
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.3e-12 Score=120.41 Aligned_cols=64 Identities=25% Similarity=0.396 Sum_probs=60.9
Q ss_pred HHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 83 EDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+||+-+|+.||+|.+|.|+. ..||.+.-||||+|++.+++++|+..|++..|+.+.|+|+|++.
T Consensus 254 eDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 254 EDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred cchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 79999999999999999997 67999999999999999999999999999999999999999864
No 22
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.31 E-value=1.7e-11 Score=90.26 Aligned_cols=60 Identities=33% Similarity=0.487 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q 045807 81 FYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPII 140 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~ 140 (320)
++++|.++|+.||.|..|.+..+..+..+|+|||+|.++++|..|++.++|.+|+|+.|.
T Consensus 11 ~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 11 TEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp -HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 458999999999999999998755588899999999999999999999999999999984
No 23
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.30 E-value=7.7e-12 Score=116.66 Aligned_cols=91 Identities=32% Similarity=0.588 Sum_probs=77.0
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
.+....||+|+|||.+..+.. ++ .+..++.+||.++|++||.|.+|.|... ++.|.|-|.|.+
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~----------~~----~l~~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n 323 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEK----------NP----DLLNDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRN 323 (382)
T ss_pred cccCCcEEEeeecCCHHHhcc----------CH----HHHHHHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCC
Confidence 345678999999998776522 22 2345788999999999999999999864 568999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
.++|+.||+.|+|++|+||+|.++++..
T Consensus 324 ~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 324 NEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred hHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 9999999999999999999999998754
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1.1e-11 Score=121.25 Aligned_cols=84 Identities=29% Similarity=0.435 Sum_probs=74.1
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHH
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHA 122 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A 122 (320)
-+-|+|.||++... ..||+.+|++||.|..|.|+.+..+...|||||+|....+|
T Consensus 117 k~rLIIRNLPf~~k-------------------------~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA 171 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCK-------------------------KPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDA 171 (678)
T ss_pred cceEEeecCCcccC-------------------------cHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHH
Confidence 46799999987433 26999999999999999999877778889999999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEeecCCCcch
Q 045807 123 ANALRNLNGRFYAGRPIIVDFSPVTDFRE 151 (320)
Q Consensus 123 ~~A~~~lnG~~~~Gr~I~V~~~~~~~~~~ 151 (320)
..|++.|||.+|+||+|.|+|+-.++..+
T Consensus 172 ~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 172 EKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred HHHHHhccCceecCceeEEeeeccccccc
Confidence 99999999999999999999997766433
No 25
>smart00362 RRM_2 RNA recognition motif.
Probab=99.27 E-value=3.9e-11 Score=86.43 Aligned_cols=60 Identities=42% Similarity=0.624 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVD 142 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~ 142 (320)
.++|.++|.+||+|..|.+.... +.+.|+|||+|.+.++|+.|++.|+|..|.|++|.|.
T Consensus 13 ~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 13 EEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred HHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 37899999999999999988654 6788999999999999999999999999999999873
No 26
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=4.5e-13 Score=115.00 Aligned_cols=84 Identities=25% Similarity=0.339 Sum_probs=74.5
Q ss_pred CCCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEE
Q 045807 37 HTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQ 115 (320)
Q Consensus 37 h~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~ 115 (320)
|..=..|-.|+|.||.. +.+|.||..+|++||+|+.|.|++ ..||+++||||+.
T Consensus 29 H~~YkdsA~Iyiggl~~-------------------------~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLc 83 (219)
T KOG0126|consen 29 HQEYKDSAYIYIGGLPY-------------------------ELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLC 83 (219)
T ss_pred hhhcccceEEEECCCcc-------------------------cccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEE
Confidence 45555778899999864 345589999999999999999987 6799999999999
Q ss_pred ECCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 116 FREEEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 116 F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
|+++.+..-|+..|||..|.||.|.|++..
T Consensus 84 YEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 84 YEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ecCccceEEEEeccCCceecceeEEeeecc
Confidence 999999999999999999999999999864
No 27
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1.1e-11 Score=114.87 Aligned_cols=63 Identities=25% Similarity=0.318 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
-||..+|++||+|++|.|+.++- -+|||+||+|++.+||++|-.+|+|..+.||+|.|..++.
T Consensus 111 pDL~aMF~kfG~VldVEIIfNER-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 111 PDLRAMFEKFGKVLDVEIIFNER-GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred ccHHHHHHhhCceeeEEEEeccC-CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 69999999999999999998764 3789999999999999999999999999999999999864
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.26 E-value=4.2e-11 Score=118.88 Aligned_cols=79 Identities=27% Similarity=0.386 Sum_probs=70.4
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHH
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~ 121 (320)
+.+|+|.||.... ++++|.++|++||.|..|.|+. ..++.++|||||+|.+.++
T Consensus 186 ~~~l~v~nl~~~~-------------------------te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 186 FLKLYVGNLHFNI-------------------------TEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred CCEEEEcCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 6789999997422 3489999999999999999986 5577899999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeecC
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
|.+|++.|||..|.|++|.|.|+..
T Consensus 241 A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 241 AKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999999863
No 29
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=3.2e-11 Score=94.90 Aligned_cols=82 Identities=22% Similarity=0.398 Sum_probs=69.5
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
|.-.++|+|+||+..- +.+++.++|.+||+|..|.|-. +...+|.|||.|++.
T Consensus 15 pevnriLyirNLp~~I-------------------------TseemydlFGkyg~IrQIRiG~--~k~TrGTAFVVYedi 67 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKI-------------------------TSEEMYDLFGKYGTIRQIRIGN--TKETRGTAFVVYEDI 67 (124)
T ss_pred hhhheeEEEecCCccc-------------------------cHHHHHHHhhcccceEEEEecC--ccCcCceEEEEehHh
Confidence 4567899999997532 3489999999999999999932 223489999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
.+|.+|+..|+|..+.++.|.|-|.+..+
T Consensus 68 ~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 68 FDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 99999999999999999999999987543
No 30
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=1.7e-11 Score=100.73 Aligned_cols=69 Identities=28% Similarity=0.470 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEe-cCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 79 EDFYEDLFEELSKYGEIESLNIC-DNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I~~v~i~-~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
++++++|.+.|.-||+|++|+|- ...||-.+|||.|+|++.+.|++|+.+|||..|-|.+|.|+|+.++
T Consensus 83 EatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 83 EATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred chhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 56789999999999999999995 4678999999999999999999999999999999999999998554
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.22 E-value=5.8e-11 Score=120.87 Aligned_cols=79 Identities=11% Similarity=0.147 Sum_probs=69.8
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHH
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~ 121 (320)
..+|+|.||.... .+++|+++|++||+|+.|.|+. ..++.++|||||+|.+.++
T Consensus 204 ~~rLfVgnLp~~v-------------------------teedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~ 258 (612)
T TIGR01645 204 FNRIYVASVHPDL-------------------------SETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 258 (612)
T ss_pred cceEEeecCCCCC-------------------------CHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHH
Confidence 4679999986422 2489999999999999999987 4578899999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeecC
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
|.+|+..|||..|+|+.|.|.++..
T Consensus 259 A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 259 QSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHHHhCCCeeCCeEEEEEecCC
Confidence 9999999999999999999999753
No 32
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.21 E-value=5e-11 Score=121.64 Aligned_cols=84 Identities=26% Similarity=0.351 Sum_probs=73.8
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
...+|+|.||... +++++|+++|++||.|+.|.|+.+.++.++|||||+|.+.++
T Consensus 284 ~~~~l~V~nl~~~-------------------------~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~ 338 (562)
T TIGR01628 284 QGVNLYVKNLDDT-------------------------VTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEE 338 (562)
T ss_pred CCCEEEEeCCCCc-------------------------cCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHH
Confidence 4567999998642 234899999999999999999887888999999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeecCCCcc
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSPVTDFR 150 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~ 150 (320)
|.+|+..|||.+|+|++|.|.|+..+.-+
T Consensus 339 A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 339 ANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred HHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 99999999999999999999999765533
No 33
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.21 E-value=6.6e-11 Score=108.29 Aligned_cols=76 Identities=22% Similarity=0.253 Sum_probs=66.4
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHH
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHA 122 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A 122 (320)
..+|+|.||... +++++|+++|+.||+|..|.|+... ...|||||+|.++++|
T Consensus 4 ~rtVfVgNLs~~-------------------------tTE~dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaA 56 (260)
T PLN03120 4 VRTVKVSNVSLK-------------------------ATERDIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGA 56 (260)
T ss_pred CCEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHH
Confidence 578999999853 3458999999999999999998643 2469999999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEeecC
Q 045807 123 ANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 123 ~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+.|+. |||..|.|+.|.|.++..
T Consensus 57 e~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 57 ETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred HHHHH-hcCCeeCCceEEEEeccC
Confidence 99996 999999999999999753
No 34
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.21 E-value=7.1e-11 Score=118.73 Aligned_cols=66 Identities=17% Similarity=0.286 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 81 FYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
++++|.++|++||.|..|.|+. ..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 308 ~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 308 GEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 3489999999999999999876 56889999999999999999999999999999999999999853
No 35
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=9e-11 Score=116.07 Aligned_cols=85 Identities=24% Similarity=0.523 Sum_probs=74.4
Q ss_pred CCCCChhhHh--hhHHHHHHHHHHHHhcCCCeeEEEEecC-CC---CCceeEEEEEECCHHHHHHHHHHhCCceeCCeeE
Q 045807 66 GQALDPRKIQ--DHFEDFYEDLFEELSKYGEIESLNICDN-LA---DHMVGNVYVQFREEEHAANALRNLNGRFYAGRPI 139 (320)
Q Consensus 66 ~~~~d~~~i~--~~~~~~eedL~~~F~k~G~I~~v~i~~~-~t---g~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I 139 (320)
.+.|++++|. ++|++|.|+|+.+|.+||.|..|.|+.+ .. .-..|.+||+|.+.++|+.|+.+|+|++|+||+|
T Consensus 405 ~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtV 484 (500)
T KOG0120|consen 405 TNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTV 484 (500)
T ss_pred hhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEE
Confidence 5566777665 7899999999999999999999999875 32 3457999999999999999999999999999999
Q ss_pred EEEeecCCCcc
Q 045807 140 IVDFSPVTDFR 150 (320)
Q Consensus 140 ~V~~~~~~~~~ 150 (320)
.+.|+.+.+|.
T Consensus 485 vtsYydeDkY~ 495 (500)
T KOG0120|consen 485 VASYYDEDKYH 495 (500)
T ss_pred EEEecCHHHhh
Confidence 99999887764
No 36
>smart00360 RRM RNA recognition motif.
Probab=99.16 E-value=1.7e-10 Score=82.66 Aligned_cols=62 Identities=39% Similarity=0.588 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCCeeEEEEecC-CCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 045807 81 FYEDLFEELSKYGEIESLNICDN-LADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVD 142 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~~-~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~ 142 (320)
.+++|+.+|++||.|..|.|... .++.++|+|||+|.+.++|..|+..|+|..|.|+.|.|.
T Consensus 9 ~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 9 TEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 35899999999999999999863 467889999999999999999999999999999999874
No 37
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=4.4e-11 Score=103.11 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=65.5
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
.+.+|+|.||+... -+.+|+++|.|||.|..|.|.... .+..||||+|+++.+
T Consensus 5 ~~~~iyvGNLP~di-------------------------RekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RD 57 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDI-------------------------REKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRD 57 (241)
T ss_pred ccceEEecCCCcch-------------------------hhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccc
Confidence 46789999997521 237899999999999999985432 245799999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeec
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
|+.||..-+|..|+|..|.|+|..
T Consensus 58 AeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 58 AEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred hhhhhhcccccccCcceEEEEecc
Confidence 999999999999999999999975
No 38
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.15 E-value=3.5e-10 Score=81.77 Aligned_cols=62 Identities=42% Similarity=0.682 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDF 143 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~ 143 (320)
+++|.++|..||.|..+.+.......+.|+|||+|.+.++|..|+..|++..|+|+.|.|.|
T Consensus 13 ~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 13 EEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred HHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999998754446789999999999999999999999999999999875
No 39
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.15 E-value=1.4e-10 Score=118.43 Aligned_cols=76 Identities=22% Similarity=0.468 Sum_probs=68.7
Q ss_pred eEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHH
Q 045807 45 TLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAA 123 (320)
Q Consensus 45 tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~ 123 (320)
+|+|.||.... ++++|+++|++||+|++|+|+. ..|++++|||||+|.+.++|+
T Consensus 2 sl~VgnLp~~v-------------------------te~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~ 56 (562)
T TIGR01628 2 SLYVGDLDPDV-------------------------TEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAE 56 (562)
T ss_pred eEEEeCCCCCC-------------------------CHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHH
Confidence 69999997532 3589999999999999999986 567899999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEeec
Q 045807 124 NALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 124 ~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
+|+..||+..|.|+.|.|.|+.
T Consensus 57 ~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 57 RALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred HHHHHhCCCEECCeeEEeeccc
Confidence 9999999999999999999974
No 40
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.14 E-value=1.9e-10 Score=116.89 Aligned_cols=83 Identities=22% Similarity=0.301 Sum_probs=71.0
Q ss_pred CCCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEE
Q 045807 37 HTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQF 116 (320)
Q Consensus 37 h~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F 116 (320)
...|....+|+|.||.... ++++|.++|++||+|..|.|+...++.++|||||+|
T Consensus 52 ~~~p~~~~~lFVgnLp~~~-------------------------tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F 106 (578)
T TIGR01648 52 GVQPGRGCEVFVGKIPRDL-------------------------YEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTF 106 (578)
T ss_pred CCCCCCCCEEEeCCCCCCC-------------------------CHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEe
Confidence 3445566789999998632 358999999999999999998778899999999999
Q ss_pred CCHHHHHHHHHHhCCceeC-CeeEEEEee
Q 045807 117 REEEHAANALRNLNGRFYA-GRPIIVDFS 144 (320)
Q Consensus 117 ~~~e~A~~A~~~lnG~~~~-Gr~I~V~~~ 144 (320)
.+.++|++||+.|||..|. |+.|.|.++
T Consensus 107 ~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 107 CGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 9999999999999998884 788777655
No 41
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=2.3e-10 Score=103.30 Aligned_cols=65 Identities=23% Similarity=0.399 Sum_probs=61.6
Q ss_pred HHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 82 YEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+++|+.+|...|+|++|++++ +.+|++.||+||.|.+++||++|+..|||..+..+.|+|.|+.+
T Consensus 55 qdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 55 QDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred HHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 488999999999999999987 67999999999999999999999999999999999999999865
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.12 E-value=2.4e-10 Score=114.69 Aligned_cols=75 Identities=23% Similarity=0.333 Sum_probs=65.9
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
+|+||+|.||... .++++|+++|++||+|..|.|+. .+|||||+|++.++
T Consensus 1 ps~vv~V~nLp~~-------------------------~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~ 50 (481)
T TIGR01649 1 PSPVVHVRNLPQD-------------------------VVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEES 50 (481)
T ss_pred CccEEEEcCCCCC-------------------------CCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHH
Confidence 5899999999852 23589999999999999999875 25899999999999
Q ss_pred HHHHHHHh--CCceeCCeeEEEEeecC
Q 045807 122 AANALRNL--NGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 122 A~~A~~~l--nG~~~~Gr~I~V~~~~~ 146 (320)
|++|++.| ++..|.|++|.|.|+..
T Consensus 51 A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 51 AKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred HHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 99999975 78999999999999864
No 43
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.12 E-value=2.7e-10 Score=102.88 Aligned_cols=75 Identities=19% Similarity=0.277 Sum_probs=65.2
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHH
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHA 122 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A 122 (320)
.-||+|.||.+ .+++++|+++|+.||+|.+|.|+.. +...|||||+|.++++|
T Consensus 5 g~TV~V~NLS~-------------------------~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aa 57 (243)
T PLN03121 5 GYTAEVTNLSP-------------------------KATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYAL 57 (243)
T ss_pred ceEEEEecCCC-------------------------CCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHH
Confidence 36899999975 2346999999999999999999874 24468999999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEeec
Q 045807 123 ANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 123 ~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
+.|+. |||..|.+++|.|.-+.
T Consensus 58 etAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 58 ETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred HHHHh-cCCCeeCCceEEEEeCc
Confidence 99996 99999999999998864
No 44
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.10 E-value=3e-10 Score=115.37 Aligned_cols=61 Identities=26% Similarity=0.440 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcC--CCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 81 FYEDLFEELSKY--GEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 81 ~eedL~~~F~k~--G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
++++|+++|++| |+|+.|.++. +||||+|++.++|++|++.|||..|+|+.|.|+|+.+..
T Consensus 246 tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 246 TEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred CHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 358999999999 9999998754 799999999999999999999999999999999997643
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=2e-10 Score=112.59 Aligned_cols=80 Identities=26% Similarity=0.444 Sum_probs=71.6
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
.-.||||.||+ |++++++|.++|++||+|..+.|+. +.|++++|.|||.|.++.
T Consensus 291 ~~~tVFvRNL~-------------------------fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~ 345 (678)
T KOG0127|consen 291 EGKTVFVRNLP-------------------------FDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQI 345 (678)
T ss_pred ccceEEEecCC-------------------------ccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHH
Confidence 45899999997 4677899999999999999999876 789999999999999999
Q ss_pred HHHHHHHHh-----CC-ceeCCeeEEEEeecC
Q 045807 121 HAANALRNL-----NG-RFYAGRPIIVDFSPV 146 (320)
Q Consensus 121 ~A~~A~~~l-----nG-~~~~Gr~I~V~~~~~ 146 (320)
+|+.||.+. .| ..|+||.|+|..+-.
T Consensus 346 ~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 346 AAQNCIEAASPASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred HHHHHHHhcCccCCCceEEEeccEEeeeeccc
Confidence 999999987 34 789999999999854
No 46
>PLN03213 repressor of silencing 3; Provisional
Probab=99.10 E-value=2e-10 Score=111.55 Aligned_cols=75 Identities=13% Similarity=0.266 Sum_probs=66.3
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH--H
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE--E 120 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~--e 120 (320)
.-.|+|.||.. +++++||..+|..||.|..|.|+ ..+| +|||||+|... .
T Consensus 10 gMRIYVGNLSy-------------------------dVTEDDLravFSeFGsVkdVEIp-RETG--RGFAFVEMssddda 61 (759)
T PLN03213 10 GVRLHVGGLGE-------------------------SVGRDDLLKIFSPMGTVDAVEFV-RTKG--RSFAYIDFSPSSTN 61 (759)
T ss_pred ceEEEEeCCCC-------------------------CCCHHHHHHHHHhcCCeeEEEEe-cccC--CceEEEEecCCcHH
Confidence 45799999975 33459999999999999999999 4555 89999999987 6
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeec
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
++.+||..|||..+.|+.|+|+-+.
T Consensus 62 EeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 62 SLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred HHHHHHHHhcCCeecCceeEEeecc
Confidence 8999999999999999999999985
No 47
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.10 E-value=1.7e-10 Score=99.28 Aligned_cols=79 Identities=29% Similarity=0.364 Sum_probs=69.9
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
..-||+|.||.. ..+++-|+++|-+.|+|+.|+|++ ..+...+|||||+|.+++
T Consensus 8 qd~tiyvgnld~-------------------------kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~ee 62 (203)
T KOG0131|consen 8 QDATLYVGNLDE-------------------------KVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEE 62 (203)
T ss_pred CCceEEEecCCH-------------------------HHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechh
Confidence 456899999864 234578999999999999999997 567788999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeec
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
+|+-|++.||...+.|++|+|.-+.
T Consensus 63 dadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 63 DADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred hhHHHHHHHHHHHhcCceeEEEecc
Confidence 9999999999999999999999876
No 48
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.10 E-value=3.4e-10 Score=101.51 Aligned_cols=78 Identities=29% Similarity=0.481 Sum_probs=70.1
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecC-CCCCceeEEEEEECCHHH
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDN-LADHMVGNVYVQFREEEH 121 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~-~tg~~~G~afV~F~~~e~ 121 (320)
..+|+|.||.. +.++++|.++|.+||.|..|.|+.. .++.++|||||+|.++++
T Consensus 115 ~~~l~v~nL~~-------------------------~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~ 169 (306)
T COG0724 115 NNTLFVGNLPY-------------------------DVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEES 169 (306)
T ss_pred CceEEEeCCCC-------------------------CCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHH
Confidence 47899999873 2345899999999999999999864 689999999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeec
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
|..|+..|+|..|.|+.|.|.++.
T Consensus 170 ~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 170 AEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred HHHHHHHcCCCeECCceeEeeccc
Confidence 999999999999999999999965
No 49
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.09 E-value=5.2e-10 Score=112.34 Aligned_cols=62 Identities=26% Similarity=0.381 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+++|+++|++||.|..|.|+.. .+|||||+|.+.++|+.|+..|||..|.|++|.|.++...
T Consensus 290 ~~~L~~lF~~yG~V~~vki~~~----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 290 CDRLFNLFCVYGNVERVKFMKN----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred HHHHHHHHHhcCCeEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 4899999999999999999764 2599999999999999999999999999999999998544
No 50
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.06 E-value=4.9e-10 Score=99.51 Aligned_cols=82 Identities=26% Similarity=0.511 Sum_probs=69.9
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
+..||+|.||...-.. +++...|..+|++||+|..|.+.+ +.+.+|-|||.|.+.+.
T Consensus 8 pn~TlYInnLnekI~~---------------------~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~ 64 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKK---------------------DELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEA 64 (221)
T ss_pred CCceEeehhccccccH---------------------HHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhH
Confidence 3459999999753221 456688899999999999998865 45789999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeecC
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
|-.|+.+|+|..|.|+++.|.|+..
T Consensus 65 As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 65 ASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred HHHHHHHhcCCcccCchhheecccC
Confidence 9999999999999999999999864
No 51
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.7e-10 Score=101.99 Aligned_cols=72 Identities=26% Similarity=0.347 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCCcch
Q 045807 80 DFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFRE 151 (320)
Q Consensus 80 ~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~~ 151 (320)
.++.-|...|-.||.|+.|.|+. -.+++.+||+||+|+..|+|.+||..||+..|.|+.|.|.|+.+.+.++
T Consensus 22 VtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kike 94 (298)
T KOG0111|consen 22 VTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIKE 94 (298)
T ss_pred HHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccccC
Confidence 45578899999999999999986 5688999999999999999999999999999999999999998765443
No 52
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.02 E-value=6.7e-10 Score=109.08 Aligned_cols=81 Identities=26% Similarity=0.396 Sum_probs=72.9
Q ss_pred CeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHH
Q 045807 44 PTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHA 122 (320)
Q Consensus 44 ~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A 122 (320)
.+|+|.|+.. +.++++|..+|+..|.|..++++. ..||+++||+|++|.+.++|
T Consensus 19 ~~v~vgnip~-------------------------~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~ 73 (435)
T KOG0108|consen 19 SSVFVGNIPY-------------------------EGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETA 73 (435)
T ss_pred cceEecCCCC-------------------------cccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhH
Confidence 7799999864 455699999999999999999976 78999999999999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 123 ANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 123 ~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
+.|+..|||..|.|++|+|.|+...+-
T Consensus 74 ~~a~~~lNg~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 74 ERAIRNLNGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred HHHHHhcCCcccCCceEEeecccccch
Confidence 999999999999999999999865443
No 53
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.4e-09 Score=98.89 Aligned_cols=62 Identities=19% Similarity=0.366 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 81 FYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
++++|++.|+.||+|.+|+|.+. +|||||.|++.|+|..||-.|||..+.|..|++.|-.+.
T Consensus 177 te~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 177 TEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred cHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 35899999999999999999874 699999999999999999999999999999999997653
No 54
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=8.7e-10 Score=98.41 Aligned_cols=67 Identities=24% Similarity=0.356 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 79 EDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
++..+.|+..|++||+|++..|+. ..|++++||+||+|.+.++|..|++..| -.|+||+..|.++..
T Consensus 23 ~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 23 ETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred ccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 445689999999999999998875 7899999999999999999999999655 568999999998754
No 55
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=2e-09 Score=103.50 Aligned_cols=63 Identities=27% Similarity=0.452 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 79 EDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
.+++|.|+++|++||.|+.|+.++ -||||.|.+.++|.+|++.|||..|+|..|.|.++.+..
T Consensus 270 ~tTeE~lk~~F~~~G~veRVkk~r-------DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 270 STTEETLKKLFNEFGKVERVKKPR-------DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred hhhHHHHHHHHHhccceEEeeccc-------ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence 477899999999999999998765 499999999999999999999999999999999997644
No 56
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=1.3e-09 Score=109.92 Aligned_cols=117 Identities=19% Similarity=0.299 Sum_probs=90.0
Q ss_pred HHHHHhhCCCCCC--ccccCceeccCCCCCCccccCCCCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHH
Q 045807 3 EHLASIFGTEKDR--VNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFED 80 (320)
Q Consensus 3 ~~~~~~~~~~~~~--~~c~f~~k~g~cr~g~~cs~~h~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~ 80 (320)
.+|..++||..+. +.|.|-.-..+---|-.|++... ..-|+|+||. |+.
T Consensus 575 ~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~----~tKIlVRNip-------------------------FeA 625 (725)
T KOG0110|consen 575 AALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKK----GTKILVRNIP-------------------------FEA 625 (725)
T ss_pred HHHHHhcCceecCceEEEEeccCccccccccccccccc----cceeeeeccc-------------------------hHH
Confidence 3678889999993 33444431223333444443222 2458899986 567
Q ss_pred HHHHHHHHHhcCCCeeEEEEecC-CCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 81 FYEDLFEELSKYGEIESLNICDN-LADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~~-~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+..+|+.+|..||.|..|.|+.. ..+.++|||||+|.++.+|..|+.+|.++.|.||.|.++|+....
T Consensus 626 t~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 626 TKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 78999999999999999999975 455679999999999999999999999999999999999997544
No 57
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=3.3e-09 Score=95.97 Aligned_cols=64 Identities=20% Similarity=0.358 Sum_probs=59.4
Q ss_pred HHHHHHHhcCCCeeEEEEecC-CCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 83 EDLFEELSKYGEIESLNICDN-LADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~-~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
.-|+++|..||.|..|+|++. .|.+.+||+||...+.++|..||..|||..+.++.|.|.|-+.
T Consensus 293 ~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 293 SILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred hHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 679999999999999999984 5689999999999999999999999999999999999999654
No 58
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=4.1e-09 Score=101.42 Aligned_cols=67 Identities=25% Similarity=0.348 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCcee-CCeeEEEEeec
Q 045807 79 EDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFY-AGRPIIVDFSP 145 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~-~Gr~I~V~~~~ 145 (320)
|.+|++|.-+|++.|+|-.++|.. +.+|.++|||||+|.+.+.|+.||+.||+..| .|+.|.|+.+.
T Consensus 94 D~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 94 DVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred cccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 346799999999999999999876 58999999999999999999999999999988 69999999874
No 59
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=4.4e-09 Score=102.02 Aligned_cols=65 Identities=29% Similarity=0.511 Sum_probs=59.4
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
.+|.+.|+.||+|++|.|.....| ++|| ||+|+++++|.+|++.|||..+.|++|.|.......+
T Consensus 91 ~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 91 KSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred HHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 789999999999999999886666 8999 9999999999999999999999999999988765444
No 60
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.87 E-value=2.8e-09 Score=97.76 Aligned_cols=72 Identities=28% Similarity=0.543 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEec--CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCCcc
Q 045807 79 EDFYEDLFEELSKYGEIESLNICD--NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFR 150 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I~~v~i~~--~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~ 150 (320)
+++++++.++|+|||+|..|.|.. ....+-.--+||+|+..++|.+|+-.|||++|+|+.+.+.|+...+|.
T Consensus 297 ~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekfs 370 (378)
T KOG1996|consen 297 EELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEKFS 370 (378)
T ss_pred HHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHhhh
Confidence 477899999999999999998864 223334567999999999999999999999999999999999887774
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=2.3e-09 Score=100.91 Aligned_cols=63 Identities=25% Similarity=0.408 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 82 YEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
|+.|+..|..||+|++|.|-. +.|++.+|||||+|+-+|.|+-|++.|||.+++||.|+|..-
T Consensus 127 EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 127 EDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 477999999999999999975 779999999999999999999999999999999999999853
No 62
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.83 E-value=5.3e-09 Score=95.93 Aligned_cols=57 Identities=26% Similarity=0.518 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
++|+..|++||+|.+|.|++ +|+||.|+-.++|..|++.|||+.|+|++++|.+++.
T Consensus 93 ~ElRa~fe~ygpviecdivk-------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 93 QELRAKFEKYGPVIECDIVK-------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred HHHhhhhcccCCceeeeeec-------ceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 78999999999999999986 7999999999999999999999999999999999864
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.82 E-value=6.2e-09 Score=95.50 Aligned_cols=59 Identities=27% Similarity=0.412 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+.+|+.+|++||+|++|.|+++ |+||-.++...|+.||..|+|..|+|..|.|+-++.+
T Consensus 16 ~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 16 EQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred hHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 4789999999999999999985 8999999999999999999999999999999998765
No 64
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=5.6e-09 Score=100.15 Aligned_cols=72 Identities=26% Similarity=0.449 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCc-eeCC--eeEEEEeecCCCcch
Q 045807 80 DFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGR-FYAG--RPIIVDFSPVTDFRE 151 (320)
Q Consensus 80 ~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~-~~~G--r~I~V~~~~~~~~~~ 151 (320)
.+|.+|+++|++||.|++|.|.+...+.++|||||+|.+.+.|..||++|||. .+.| .+|.|.|+..++-+.
T Consensus 136 ~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 136 CTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred ccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 56799999999999999999999888899999999999999999999999995 4454 789999997766444
No 65
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=8.3e-09 Score=104.16 Aligned_cols=70 Identities=29% Similarity=0.412 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHhcCCCeeEEEEecCCCC----CceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 76 DHFEDFYEDLFEELSKYGEIESLNICDNLAD----HMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 76 ~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg----~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
..|+++.++|..+|.++|.|+.|.|.....+ .+.|||||+|.++++|+.|++.|+|..++|..|.|.++.
T Consensus 523 lnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 523 LNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred CCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 3577888999999999999999999763322 345999999999999999999999999999999999987
No 66
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.76 E-value=9.2e-09 Score=101.29 Aligned_cols=71 Identities=28% Similarity=0.356 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHHhcCCCeeEEEEecC-CCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 76 DHFEDFYEDLFEELSKYGEIESLNICDN-LADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 76 ~~~~~~eedL~~~F~k~G~I~~v~i~~~-~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
-||..++++|+.+|+.||+|..|.+... .||.++||+||+|.+.++|.+|+..|||..|.|+.|+|...+.
T Consensus 286 LHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 286 LHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred cccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 4778888999999999999999999875 4999999999999999999999999999999999999998753
No 67
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=2.4e-08 Score=94.11 Aligned_cols=91 Identities=24% Similarity=0.502 Sum_probs=74.0
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCC----CceeEEE
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLAD----HMVGNVY 113 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg----~~~G~af 113 (320)
.+..|.+|+|+||..+.++ -++++.+|.++|+|||.|..|.|.. ..++ .-.-..|
T Consensus 442 R~~~S~VivLRNMV~P~Di--------------------De~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIF 501 (544)
T KOG0124|consen 442 RKQESTVIVLRNMVDPKDI--------------------DEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIF 501 (544)
T ss_pred ccccCcEEEEeccCChhhh--------------------hhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheee
Confidence 3567899999999875543 2577899999999999999998875 3222 1234789
Q ss_pred EEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 114 VQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 114 V~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
|+|.....+..|+++|+|++|.|++|.++.+....|
T Consensus 502 VefS~~~e~~rak~ALdGRfFgGr~VvAE~YDQ~~F 537 (544)
T KOG0124|consen 502 VEFSIASETHRAKQALDGRFFGGRKVVAEVYDQERF 537 (544)
T ss_pred eeechhhHHHHHHHhhccceecCceeehhhhhhhcc
Confidence 999999999999999999999999999998765544
No 68
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.67 E-value=7.3e-08 Score=92.73 Aligned_cols=78 Identities=23% Similarity=0.358 Sum_probs=69.3
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHh-cCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELS-KYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~-k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
-.+.|||.||+. +.-++||+++|. +.|+|+.|.|....+++++|+|.|+|+++|
T Consensus 43 r~R~vfItNIpy-------------------------d~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E 97 (608)
T KOG4212|consen 43 RDRSVFITNIPY-------------------------DYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPE 97 (608)
T ss_pred ccceEEEecCcc-------------------------hhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHH
Confidence 446699999863 445689999995 899999999998889999999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEee
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
.+++|++.||...+.||+|+|.--
T Consensus 98 ~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 98 NVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred HHHHHHHHhhhccccCceEEEecc
Confidence 999999999999999999998754
No 69
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.67 E-value=3.3e-08 Score=85.33 Aligned_cols=66 Identities=24% Similarity=0.439 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCCeeEE-EE-ecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 83 EDLFEELSKYGEIESL-NI-CDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 83 edL~~~F~k~G~I~~v-~i-~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
.-|.+.|++||.|... .| ..+.|+.++||+||.|.+.+.+.+|+..|||+.+..++|.|+|+..++
T Consensus 111 ~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 111 KLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred HHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecC
Confidence 6799999999999774 23 346789999999999999999999999999999999999999985443
No 70
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.66 E-value=5.5e-08 Score=85.44 Aligned_cols=69 Identities=16% Similarity=0.306 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcC-CCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 79 EDFYEDLFEELSKY-GEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 79 ~~~eedL~~~F~k~-G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
-..+..|...|.+| |.|..+.+.+ ..||.++|||||+|++++.|..|...||+..|.|+.|.|.+.++.
T Consensus 60 g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 60 GFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred chhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 34456788888887 7888888866 569999999999999999999999999999999999999998765
No 71
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=5.1e-08 Score=94.64 Aligned_cols=65 Identities=28% Similarity=0.478 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 80 DFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 80 ~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+++..|++.|+++|+|++|.|+...| +.|||||.|.++.+|+.|+++||...+.|++|.|.|+..
T Consensus 10 v~e~~l~~~f~~~~~v~s~rvc~d~t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 10 VTEAMLFDKFSPAGPVLSIRVCRDAT--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CChHHHHHHhcccCCceeEEEeecCC--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 45689999999999999999998664 999999999999999999999999999999999999864
No 72
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.60 E-value=1.2e-07 Score=96.70 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=69.8
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
.|.||+|..|..+ .++.||..+|+.||.|.+|.|+.+ +|+|||+.....+
T Consensus 420 ~SrTLwvG~i~k~-------------------------v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~Rqd 469 (894)
T KOG0132|consen 420 CSRTLWVGGIPKN-------------------------VTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQD 469 (894)
T ss_pred eeeeeeeccccch-------------------------hhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhH
Confidence 5788999888652 345899999999999999999764 6999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeecCCCcch
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSPVTDFRE 151 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~~ 151 (320)
|++|+++|+...|.++.|+|.|+..+..+.
T Consensus 470 A~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 470 AEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred HHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 999999999999999999999997655544
No 73
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.58 E-value=2.9e-08 Score=87.94 Aligned_cols=81 Identities=22% Similarity=0.128 Sum_probs=69.8
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
|....||+|.||+. ..+++-|.++|-+.|+|.+|.|+....++.+ ||||.|.++
T Consensus 6 ae~drtl~v~n~~~-------------------------~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E 59 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYS-------------------------GVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNE 59 (267)
T ss_pred cchhhHHHHHhhhh-------------------------hhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccc
Confidence 44568999999985 1235789999999999999999886666667 999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
....-|++.|||..+.+..|.|.+...
T Consensus 60 ~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 60 NSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred cchhhhhhhcccchhccchhhcccccC
Confidence 999999999999999999999998654
No 74
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=5.2e-08 Score=88.60 Aligned_cols=66 Identities=20% Similarity=0.304 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCCeeEEEEe-cCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 83 EDLFEELSKYGEIESLNIC-DNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~-~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
.+|...|-.||.|++.+|. +..|..++.|+||.|.++.+|+.||.+|||..|+.+.|+|.+-.+++
T Consensus 300 aEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 300 AELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred HHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 5788999999999999885 46688899999999999999999999999999999999999865443
No 75
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=9.8e-08 Score=91.76 Aligned_cols=67 Identities=22% Similarity=0.418 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCce-eCC--eeEEEEeecC
Q 045807 80 DFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRF-YAG--RPIIVDFSPV 146 (320)
Q Consensus 80 ~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~-~~G--r~I~V~~~~~ 146 (320)
.+|.||+++|++||.|.+|.|++ +.|+.++|||||+|.+.++|.+|+.+|++.+ |-| .+|.|.|+..
T Consensus 46 ~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~ 116 (510)
T KOG0144|consen 46 ASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADG 116 (510)
T ss_pred ccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccch
Confidence 35689999999999999999987 6789999999999999999999999998854 433 6888888754
No 76
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.38 E-value=1.2e-06 Score=80.00 Aligned_cols=70 Identities=23% Similarity=0.419 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 79 EDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
..+.+||+++|..||.++.+.|-.+..|.+.|.|=|.|...++|+.|++.+||..++|++|++.......
T Consensus 94 ~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 94 GVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPS 163 (243)
T ss_pred CcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcc
Confidence 4556999999999999999888878889999999999999999999999999999999999999875443
No 77
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=7.1e-07 Score=81.32 Aligned_cols=69 Identities=20% Similarity=0.370 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCc-eeCC--eeEEEEeecCCCc
Q 045807 81 FYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGR-FYAG--RPIIVDFSPVTDF 149 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~-~~~G--r~I~V~~~~~~~~ 149 (320)
-|+||+.+|..||+|.+|.|.....|.++|+|||+|.+..+|+.||.+|+|. .+-| -.|.|.|+...+.
T Consensus 32 ~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkE 103 (371)
T KOG0146|consen 32 SEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 103 (371)
T ss_pred cHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccchHH
Confidence 3589999999999999999998778899999999999999999999999994 4444 5688999865443
No 78
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.37 E-value=5.5e-07 Score=86.82 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=62.8
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHH
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHA 122 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A 122 (320)
+.+|+|+||+. +-|++-|++.|..||.|+.+.|.. .++++| .|.|.++++|
T Consensus 536 a~qIiirNlP~-------------------------dfTWqmlrDKfre~G~v~yadime--~GkskG--VVrF~s~edA 586 (608)
T KOG4212|consen 536 ACQIIIRNLPF-------------------------DFTWQMLRDKFREIGHVLYADIME--NGKSKG--VVRFFSPEDA 586 (608)
T ss_pred ccEEEEecCCc-------------------------cccHHHHHHHHHhccceehhhhhc--cCCccc--eEEecCHHHH
Confidence 45699999975 345689999999999999998844 355666 8999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEee
Q 045807 123 ANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 123 ~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
+.|+..|||..++|+.|+|.|+
T Consensus 587 Era~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 587 ERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred HHHHHHhccCcccCceeeeeeC
Confidence 9999999999999999999984
No 79
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.28 E-value=1.3e-06 Score=79.66 Aligned_cols=63 Identities=22% Similarity=0.345 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 83 EDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+.+..+|+.||.|..|.|+. ..+++++||+||+|.+.+.++.|++ |||..|.|+.|.|.+...
T Consensus 116 ~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 116 TKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred chhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeee
Confidence 45889999999999998876 5677899999999999999999999 999999999999999643
No 80
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=6.3e-07 Score=88.72 Aligned_cols=55 Identities=33% Similarity=0.497 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPII 140 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~ 140 (320)
+++|+.+|+.||+|..|..-. ...|.+||+|.+..+|+.|+++|++..|.|+.|+
T Consensus 89 n~~L~~~f~~yGeir~ir~t~----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 89 NDTLLRIFGAYGEIREIRETP----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred HHHHHHHHHhhcchhhhhccc----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 489999999999999976533 3469999999999999999999999999999998
No 81
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.13 E-value=5.3e-06 Score=82.38 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCCCeeEEEEecCC-CCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 82 YEDLFEELSKYGEIESLNICDNL-ADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~-tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
.-||+.+|+|||+|+-..|+.+. +.-.+.|+||++.+..+|.+||..|+-..|-|+.|.|+-+.
T Consensus 419 AtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 419 ATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred hhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 36999999999999999998743 55567899999999999999999999999999999999875
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.12 E-value=2.3e-06 Score=76.70 Aligned_cols=59 Identities=22% Similarity=0.432 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 81 FYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
.+.||+.+|.+||.|..|.|.. ||+||+|++..+|..|+..|||..|.|-.|.|+|+..
T Consensus 14 ~~~d~E~~f~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 14 RERDVERFFKGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred chhHHHHHHhhccccccceeec-------ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 4589999999999999998843 8999999999999999999999999999999999863
No 83
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.11 E-value=5.7e-06 Score=77.63 Aligned_cols=85 Identities=20% Similarity=0.459 Sum_probs=67.8
Q ss_pred HHHHhcCCCeeEEEEecCC----CCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCCcchhhhhcccccc
Q 045807 86 FEELSKYGEIESLNICDNL----ADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENV 161 (320)
Q Consensus 86 ~~~F~k~G~I~~v~i~~~~----tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~~~~~~~~~~~~ 161 (320)
.+.|.+||+|..|.|-+.. +-..-.-+||+|.+.++|..||.+.+|..++|+.|++.|-+. ..|..|+.+.
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGTT-----KYCtsYLRn~ 212 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTT-----KYCTSYLRNA 212 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecCch-----HHHHHHHcCC
Confidence 5789999999999986522 111112369999999999999999999999999999999652 2488888877
Q ss_pred cCCCCccccccccc
Q 045807 162 CNRGGYCNFMHLKK 175 (320)
Q Consensus 162 ~~~g~~~~~~~~~~ 175 (320)
-...+.|-|+|.-.
T Consensus 213 ~CpNp~CMyLHEpg 226 (480)
T COG5175 213 VCPNPDCMYLHEPG 226 (480)
T ss_pred CCCCCCeeeecCCC
Confidence 77778899998643
No 84
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=1.6e-05 Score=79.09 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeC-CeeEEEEee
Q 045807 80 DFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYA-GRPIIVDFS 144 (320)
Q Consensus 80 ~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~-Gr~I~V~~~ 144 (320)
.+..-|..+|+++|+|+.+.++-...|..+||+|++|.+..+|+.|++.|||..|+ ..++.|...
T Consensus 76 klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~f 141 (698)
T KOG2314|consen 76 KLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRLF 141 (698)
T ss_pred HHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEeehh
Confidence 45578899999999999999986555568999999999999999999999998886 566666553
No 85
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.98 E-value=3e-05 Score=73.08 Aligned_cols=92 Identities=14% Similarity=0.258 Sum_probs=75.2
Q ss_pred CCCccccCCCCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeE--------EEE
Q 045807 29 HGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIES--------LNI 100 (320)
Q Consensus 29 ~g~~cs~~h~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~--------v~i 100 (320)
.-.+-+..+..|...+.|+|.||+... |.+++.++|+++|-|.. |.|
T Consensus 120 ~~~e~~~~~~~~~~Nt~VYVsgLP~Di-------------------------T~dE~~~~~sKcGiI~~d~~t~epk~Kl 174 (382)
T KOG1548|consen 120 QKEEGEWFNPEPKVNTSVYVSGLPLDI-------------------------TVDEFAEVMSKCGIIMRDPQTGEPKVKL 174 (382)
T ss_pred ccCCCcccCcccccCceEEecCCCCcc-------------------------cHHHHHHHHHhcceEeccCCCCCeeEEE
Confidence 333444556667677779999997522 34788999999998864 666
Q ss_pred ecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 101 CDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 101 ~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
.....|+.+|=|.|.|...+++.-|++.|++..|.|+.|.|+-|.
T Consensus 175 Yrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAk 219 (382)
T KOG1548|consen 175 YRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAK 219 (382)
T ss_pred EecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhh
Confidence 666679999999999999999999999999999999999999874
No 86
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.96 E-value=5.9e-05 Score=59.59 Aligned_cols=83 Identities=13% Similarity=0.239 Sum_probs=61.3
Q ss_pred CeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHH
Q 045807 44 PTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHA 122 (320)
Q Consensus 44 ~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A 122 (320)
.||+|+|++.. ++++.|. +.|.+.| .|...-+.|+- -.++...|||||.|.++++|
T Consensus 2 TTvMirNIPn~--------------~t~~~L~-------~~l~~~~--~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~ 58 (97)
T PF04059_consen 2 TTVMIRNIPNK--------------YTQEMLI-------QILDEHF--KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAA 58 (97)
T ss_pred eeEEEecCCCC--------------CCHHHHH-------HHHHHhc--cCcceEEEeeeeccCCCceEEEEEEcCCHHHH
Confidence 48999999753 3443333 4444444 48888888874 45677899999999999999
Q ss_pred HHHHHHhCCceeC----CeeEEEEeecCCCc
Q 045807 123 ANALRNLNGRFYA----GRPIIVDFSPVTDF 149 (320)
Q Consensus 123 ~~A~~~lnG~~~~----Gr~I~V~~~~~~~~ 149 (320)
..-++.++|.... .+...|.||..+..
T Consensus 59 ~~F~~~f~g~~w~~~~s~Kvc~i~yAriQG~ 89 (97)
T PF04059_consen 59 IRFYKAFNGKKWPNFNSKKVCEISYARIQGK 89 (97)
T ss_pred HHHHHHHcCCccccCCCCcEEEEehhHhhCH
Confidence 9999999998774 56677777765543
No 87
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.96 E-value=3e-05 Score=74.48 Aligned_cols=65 Identities=25% Similarity=0.404 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCCcc
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFR 150 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~ 150 (320)
.+-|+.+|+-||.|..|.|..+. +-.|.|+|.+...|+-|+..|+|..+.|++|.|.++.-+..-
T Consensus 312 ~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 312 PDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred hhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 37899999999999999998753 258999999999999999999999999999999999755543
No 88
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.95 E-value=5.5e-06 Score=79.01 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 045807 80 DFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYA 135 (320)
Q Consensus 80 ~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~ 135 (320)
.+..+|.+.|..+|.|...++.... ..-++-|+|..+.....|+. ++|+.|.
T Consensus 163 ~~l~e~~e~f~r~Gev~ya~~ask~---~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 163 AILPESGESFERKGEVSYAHTASKS---RSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hcchhhhhhhhhcchhhhhhhhccC---CCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 3458899999999999988776421 23467799999999999988 7888876
No 89
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.88 E-value=2.4e-05 Score=76.89 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 045807 80 DFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDF 143 (320)
Q Consensus 80 ~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~ 143 (320)
++...|+++|.+||+|+...|.. ...+....||||+|++..+++.||.+ +-..+++++|.|+-
T Consensus 300 a~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 300 ATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred CCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 34478999999999999988854 32334448999999999999999995 47888999999985
No 90
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.83 E-value=7.4e-05 Score=57.07 Aligned_cols=72 Identities=28% Similarity=0.415 Sum_probs=49.6
Q ss_pred eEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCC-CeeEEEEecCCCCCceeEEEEEECCHHHHH
Q 045807 45 TLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYG-EIESLNICDNLADHMVGNVYVQFREEEHAA 123 (320)
Q Consensus 45 tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G-~I~~v~i~~~~tg~~~G~afV~F~~~e~A~ 123 (320)
.|+|.||+... ++ ..+..-|..++..+| +|..|. .|.|+|.|.+++.|.
T Consensus 4 ~L~V~NLP~~~--------------d~-------~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~ 53 (90)
T PF11608_consen 4 LLYVSNLPTNK--------------DP-------SSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAE 53 (90)
T ss_dssp EEEEES--TTS---------------H-------HHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHH
T ss_pred EEEEecCCCCC--------------CH-------HHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHH
Confidence 58899987532 23 345588999999885 666652 279999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEeecC
Q 045807 124 NALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 124 ~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
.|.+.|+|..+-|.+|.|.|.+.
T Consensus 54 RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 54 RAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp HHHHHHTT--SSSS--EEESS--
T ss_pred HHHHhhcccccccceEEEEEcCC
Confidence 99999999999999999999854
No 91
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.76 E-value=2.3e-05 Score=74.32 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 79 EDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
+++++.|.+.|.+||+|..|.|.. +.++.++||+||+|++++....++. .--..|+|+.|.+.-+.
T Consensus 17 ~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 17 ETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred cccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 456799999999999999999986 6789999999999999988887766 44567888888776653
No 92
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.61 E-value=4.8e-05 Score=69.08 Aligned_cols=61 Identities=21% Similarity=0.432 Sum_probs=53.8
Q ss_pred HHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 045807 83 EDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDF 143 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~ 143 (320)
+-|-..|.+|=.-....|++ ..|++++||+||.|.+..++..|+..|||.+++.++|++--
T Consensus 205 ~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 205 DVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred HHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 55777888887777777776 67999999999999999999999999999999999998654
No 93
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.60 E-value=4.7e-05 Score=72.15 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCCeeE--------EEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 81 FYEDLFEELSKYGEIES--------LNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~--------v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
++++|.+.|.++|.|.. |+|.+ ..|+.++|-|.|.|+++..|+.||..++++.|.|.+|+|.++..
T Consensus 79 ~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~ 153 (351)
T KOG1995|consen 79 CENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAER 153 (351)
T ss_pred hHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhh
Confidence 45899999999998853 55544 57899999999999999999999999999999999999998753
No 94
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.60 E-value=0.00012 Score=74.69 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCC----CCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 81 FYEDLFEELSKYGEIESLNICDNLA----DHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~~~t----g~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+++.|...|..||+|..|.|..+.+ ....-++||-|.+..+|+.|++.|+|..+.+..|++-|...
T Consensus 187 ~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 187 DENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKA 256 (877)
T ss_pred cHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccccc
Confidence 3488999999999999999875432 34567999999999999999999999999999999999843
No 95
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.59 E-value=0.00038 Score=62.36 Aligned_cols=65 Identities=12% Similarity=0.257 Sum_probs=46.9
Q ss_pred HHHHHHHhcCCCeeEEEEec--CCCCCceeEEEEEECCHHHHHHHHHHhCCceeC---CeeEEEEeecCC
Q 045807 83 EDLFEELSKYGEIESLNICD--NLADHMVGNVYVQFREEEHAANALRNLNGRFYA---GRPIIVDFSPVT 147 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~--~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~---Gr~I~V~~~~~~ 147 (320)
-+|..+|-.|---+.+.|.. ....-.+-+|||+|.+..+|++|+.+|||..|+ +..|+++++...
T Consensus 49 REiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSN 118 (284)
T KOG1457|consen 49 REIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSN 118 (284)
T ss_pred HHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcC
Confidence 44556666654444444432 222223469999999999999999999999996 889999998643
No 96
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.52 E-value=0.00012 Score=69.37 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCCcch
Q 045807 79 EDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFRE 151 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~~ 151 (320)
++++++|++.|++||.|..+.|+. ..+..++||+||+|.+++++.+++. ..-..|+|+.|.|.-|.++....
T Consensus 108 ~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 108 DTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred CCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhcc
Confidence 466799999999999999887764 6788999999999999999998877 78899999999999987765443
No 97
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.44 E-value=0.00061 Score=57.49 Aligned_cols=59 Identities=24% Similarity=0.573 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 79 EDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
+.+..+|.+.|..||+|.-|+++. +.-+|+|.+-++|.+|+. |+|..+.|+.|+|.+-+
T Consensus 47 d~l~~~ll~~~~~~GevvLvRfv~-------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 47 DNLMDELLQKFAQYGEVVLVRFVG-------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHHHHHHCCS-ECEEEEET-------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE--
T ss_pred HHHHHHHHHHHHhCCceEEEEEeC-------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCC
Confidence 356689999999999998887765 578999999999999999 99999999999999854
No 98
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.36 E-value=0.00069 Score=47.48 Aligned_cols=39 Identities=23% Similarity=0.593 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHH
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANAL 126 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~ 126 (320)
+.|...|..||+|+.+.+... .-++||+|.+..+|++|+
T Consensus 15 ~~vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 15 EEVLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 678889999999999988632 249999999999999985
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.29 E-value=0.00047 Score=55.30 Aligned_cols=58 Identities=26% Similarity=0.437 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCC-----ceeCCeeEEEEee
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNG-----RFYAGRPIIVDFS 144 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG-----~~~~Gr~I~V~~~ 144 (320)
.++|+++|++||+|..|.+.... -.|||-|.++++|+.|+..+.- ..+.+..+.+...
T Consensus 15 re~iK~~f~~~g~V~yVD~~~G~-----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 15 REDIKEAFSQFGEVAYVDFSRGD-----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred HHHHHHHHHhcCCcceEEecCCC-----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 58999999999999999887643 3899999999999999997753 4667777766654
No 100
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.29 E-value=0.00084 Score=66.14 Aligned_cols=82 Identities=23% Similarity=0.282 Sum_probs=64.1
Q ss_pred cCCCCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEE
Q 045807 35 RLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYV 114 (320)
Q Consensus 35 ~~h~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV 114 (320)
++.+.+.....|.|+.|++. .+++||.++|+.++ |..+.++. .+|++.|-|||
T Consensus 2 ki~~e~~~~~~vr~rGLPws-------------------------at~~ei~~Ff~~~~-I~~~~~~r-~~Gr~sGeA~V 54 (510)
T KOG4211|consen 2 KIENEGSTAFEVRLRGLPWS-------------------------ATEKEILDFFSNCG-IENLEIPR-RNGRPSGEAYV 54 (510)
T ss_pred CcccCCCcceEEEecCCCcc-------------------------ccHHHHHHHHhcCc-eeEEEEec-cCCCcCcceEE
Confidence 34455666778889998763 35689999999976 77765554 45788899999
Q ss_pred EECCHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 115 QFREEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 115 ~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
+|++++++++|++ .+-..+..+-|.|--+
T Consensus 55 e~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 55 EFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred EeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 9999999999999 7777777787877654
No 101
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.28 E-value=0.00025 Score=63.68 Aligned_cols=54 Identities=31% Similarity=0.512 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 045807 81 FYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIV 141 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V 141 (320)
.+.+|.+.|.+||++....+ ..+++||+|.++++|..|+..|+|..+.|+.|.+
T Consensus 112 ~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 112 SWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred hHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 35899999999999954433 2589999999999999999999999999999998
No 102
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.20 E-value=0.00038 Score=67.42 Aligned_cols=66 Identities=27% Similarity=0.319 Sum_probs=52.8
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecC---C---CCC-------
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDN---L---ADH------- 107 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~---~---tg~------- 107 (320)
.++.||++-||+.. -.++.|.++|+.+|.|+.|.|+++ . .+.
T Consensus 229 l~srtivaenLP~D-------------------------h~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~ 283 (484)
T KOG1855|consen 229 LPSRTIVAENLPLD-------------------------HSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFEL 283 (484)
T ss_pred cccceEEEecCCcc-------------------------hHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhh
Confidence 36889999998852 234889999999999999999875 1 121
Q ss_pred -ceeEEEEEECCHHHHHHHHHHhCC
Q 045807 108 -MVGNVYVQFREEEHAANALRNLNG 131 (320)
Q Consensus 108 -~~G~afV~F~~~e~A~~A~~~lnG 131 (320)
.+-+|+|+|+..+.|.+|...||.
T Consensus 284 ~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 284 QTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred hhhhhhhhhhhhhHHHHHHHHhhch
Confidence 245899999999999999998854
No 103
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.17 E-value=0.0007 Score=65.32 Aligned_cols=63 Identities=24% Similarity=0.290 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCcee-CC-eeEEEEeecCC
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFY-AG-RPIIVDFSPVT 147 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~-~G-r~I~V~~~~~~ 147 (320)
.+-|..+|++||.|.+|....+.. .=.|.|+|.+.+.|+.|..+|+|+-| +| ..|.++|+..+
T Consensus 164 lDVLHqvFS~fG~VlKIiTF~Knn---~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt 228 (492)
T KOG1190|consen 164 LDVLHQVFSKFGFVLKIITFTKNN---GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLT 228 (492)
T ss_pred HHHHHHHHhhcceeEEEEEEeccc---chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcc
Confidence 378999999999999987665322 12589999999999999999999766 33 68899998653
No 104
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.10 E-value=0.002 Score=57.73 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeC-CeeEEEEee
Q 045807 81 FYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYA-GRPIIVDFS 144 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~-Gr~I~V~~~ 144 (320)
..+-|..+|.+|.-...|.++... .|.|||+|.+...|..|.++|+|..+- ..++.|.|+
T Consensus 159 ~~e~l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 159 ESEMLSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred hHHHHHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 346778889999988899887643 389999999999999999999998886 788888876
No 105
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.09 E-value=0.0018 Score=61.89 Aligned_cols=64 Identities=19% Similarity=0.206 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCcee--CCeeEEEEeecCCCc
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFY--AGRPIIVDFSPVTDF 149 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~--~Gr~I~V~~~~~~~~ 149 (320)
.+-|..+|...|+|..|.|.++. --.|.|+|++.+.|++|..+|||..| +--+|+|+|+.++..
T Consensus 136 vDVly~Icnp~GkVlRIvIfkkn----gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 136 VDVLYTICNPQGKVLRIVIFKKN----GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred hhhhhhhcCCCCceEEEEEEecc----ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 36788999999999999998752 24899999999999999999999765 347999999987654
No 106
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.01 E-value=0.0029 Score=50.27 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCCeeEEEEe-cC-------CCCCceeEEEEEECCHHHHHHHHHHhCCceeCCee-EEEEee
Q 045807 82 YEDLFEELSKYGEIESLNIC-DN-------LADHMVGNVYVQFREEEHAANALRNLNGRFYAGRP-IIVDFS 144 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~-~~-------~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~-I~V~~~ 144 (320)
...|.++|++||.|++..-+ .. ........+.|+|.++.+|++||. -||..|.|.. |-|-+.
T Consensus 19 ~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 19 SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMVGVKPC 89 (100)
T ss_dssp HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEEEEEE-
T ss_pred HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEEEEEEc
Confidence 37899999999999887511 10 001123599999999999999999 8999999854 445554
No 107
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.96 E-value=0.00098 Score=66.71 Aligned_cols=66 Identities=15% Similarity=0.327 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 81 FYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
++..|.++...||++....++. ..++-++||||.+|.+.-....|+..|||..+.+++|.|..+.+
T Consensus 302 ~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 302 TEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred CHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 4577888889999999998876 55789999999999999999999999999999999999999754
No 108
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.78 E-value=0.0017 Score=62.48 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCC----CCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 81 FYEDLFEELSKYGEIESLNICDNL----ADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~~~----tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
+.+.|..+|.-.|+|..+.|.-+. -....-.|||.|.+...+..|.. |.+..|-++.|.|--+
T Consensus 20 t~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 20 TKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred hHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 457899999999999999885421 12334699999999998887754 7777777777766544
No 109
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=96.77 E-value=0.0003 Score=42.30 Aligned_cols=24 Identities=33% Similarity=0.902 Sum_probs=19.3
Q ss_pred CccccCceeccCCCCCCccccCCC
Q 045807 15 RVNCPFYFKIGACRHGDRCSRLHT 38 (320)
Q Consensus 15 ~~~c~f~~k~g~cr~g~~cs~~h~ 38 (320)
..+|.+|.++|.|++|+.|.+.|.
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSS
T ss_pred cccChhhccCCccCCCCCcCccCC
Confidence 568999999999999999999995
No 110
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.64 E-value=0.0094 Score=57.16 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
-+-|+.+|-.||.|+.|...+..+ |.|.|+.-+..+.+.|+..||+..+-|.+|.|.++..
T Consensus 302 ~drlFNl~ClYGNV~rvkFmkTk~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 302 CDRLFNLFCLYGNVERVKFMKTKP----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred hhhhhhhhhhcCceeeEEEeeccc----ceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 377999999999999999887443 8999999999999999999999999999999999864
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.55 E-value=0.0039 Score=59.88 Aligned_cols=73 Identities=21% Similarity=0.294 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcCCCe-eE--EEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCCcc
Q 045807 78 FEDFYEDLFEELSKYGEI-ES--LNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFR 150 (320)
Q Consensus 78 ~~~~eedL~~~F~k~G~I-~~--v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~ 150 (320)
|+.+.+||..+|..|..- .. |+|+-+..|++.|-|||+|.+.++|..|....+......+-|.|--+......
T Consensus 290 y~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln 365 (508)
T KOG1365|consen 290 YEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELN 365 (508)
T ss_pred hhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHH
Confidence 566778888888887643 33 78888888999999999999999999999999998888888887666544433
No 112
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.47 E-value=0.0017 Score=65.31 Aligned_cols=79 Identities=22% Similarity=0.313 Sum_probs=64.3
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHh-cCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELS-KYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~-k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
.|.+|.|.||.-++++ -.|++++. ..|.|+.+||-+ -+..|||.|.+.+
T Consensus 443 ~SnvlhI~nLvRPFTl-------------------------gQLkelL~rtgg~Vee~WmDk-----IKShCyV~yss~e 492 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTL-------------------------GQLKELLGRTGGNVEEFWMDK-----IKSHCYVSYSSVE 492 (718)
T ss_pred ccceEeeecccccchH-------------------------HHHHHHHhhccCchHHHHHHH-----hhcceeEecccHH
Confidence 5788999999987765 67888888 677788887744 2468999999999
Q ss_pred HHHHHHHHhCCcee---CCeeEEEEeecCCCcc
Q 045807 121 HAANALRNLNGRFY---AGRPIIVDFSPVTDFR 150 (320)
Q Consensus 121 ~A~~A~~~lnG~~~---~Gr~I~V~~~~~~~~~ 150 (320)
+|.+.+.+|||... +++-|.|+|.....+.
T Consensus 493 EA~atr~AlhnV~WP~sNPK~L~adf~~~deld 525 (718)
T KOG2416|consen 493 EAAATREALHNVQWPPSNPKHLIADFVRADELD 525 (718)
T ss_pred HHHHHHHHHhccccCCCCCceeEeeecchhHHH
Confidence 99999999999755 6788999998765543
No 113
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.43 E-value=0.0012 Score=62.07 Aligned_cols=70 Identities=26% Similarity=0.346 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 77 HFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 77 ~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
.|.+..++|+.+|..+|.|..|.++. ..++.++|||||.|.....+..|+.. +...+.|++|.|++....
T Consensus 194 ~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 194 DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 45667789999999999999999986 67899999999999999999999887 899999999999987543
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.41 E-value=0.0071 Score=62.01 Aligned_cols=65 Identities=23% Similarity=0.300 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCCCeeE-EEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 045807 79 EDFYEDLFEELSKYGEIES-LNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDF 143 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I~~-v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~ 143 (320)
+.+.+||.++|.-|-.+-. |.|..+..|.+.|-|-|-|++.++|..|...|+++.|..++|.|.+
T Consensus 878 ~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 878 DVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred cccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4455899999999988754 4444577889999999999999999999999999999999999875
No 115
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.27 E-value=0.0095 Score=58.90 Aligned_cols=67 Identities=22% Similarity=0.177 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCCCeeE-EEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 81 FYEDLFEELSKYGEIES-LNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~-v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+++||.++|+-.=.|.. |.++....+.+.|-|||+|++++.|++|++ -|-..|.-|-|.|--+....
T Consensus 116 te~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss~~e 183 (510)
T KOG4211|consen 116 TEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSSRAE 183 (510)
T ss_pred cHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhHHHH
Confidence 45899999986544444 545555556788999999999999999998 56677888888877665433
No 116
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.19 E-value=0.0055 Score=55.06 Aligned_cols=65 Identities=25% Similarity=0.388 Sum_probs=49.2
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
...||||.||-.+. +|++|+.+|+.|--..-++|-.. .| --.|||+|++.+.
T Consensus 209 acstlfianl~~~~-------------------------~ed~l~~~~~~~~gf~~l~~~~~-~g--~~vaf~~~~~~~~ 260 (284)
T KOG1457|consen 209 ACSTLFIANLGPNC-------------------------TEDELKQLLSRYPGFHILKIRAR-GG--MPVAFADFEEIEQ 260 (284)
T ss_pred hhhhHhhhccCCCC-------------------------CHHHHHHHHHhCCCceEEEEecC-CC--cceEeecHHHHHH
Confidence 45688999987533 34889999999976665555332 11 2489999999999
Q ss_pred HHHHHHHhCCcee
Q 045807 122 AANALRNLNGRFY 134 (320)
Q Consensus 122 A~~A~~~lnG~~~ 134 (320)
|..|+..|+|..|
T Consensus 261 at~am~~lqg~~~ 273 (284)
T KOG1457|consen 261 ATDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHHhhccee
Confidence 9999999999765
No 117
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.15 E-value=0.0034 Score=37.13 Aligned_cols=22 Identities=45% Similarity=0.923 Sum_probs=19.9
Q ss_pred ccccCceeccCCCCCCccccCCC
Q 045807 16 VNCPFYFKIGACRHGDRCSRLHT 38 (320)
Q Consensus 16 ~~c~f~~k~g~cr~g~~cs~~h~ 38 (320)
+.|.+| ++|.|..|+.|.++|.
T Consensus 5 ~~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCc-cCCCCCCCCCcCCCCc
Confidence 479999 8899999999999986
No 118
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.14 E-value=0.017 Score=51.00 Aligned_cols=64 Identities=23% Similarity=0.281 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhC--CceeCCeeEEEEeecCCCc
Q 045807 81 FYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLN--GRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~ln--G~~~~Gr~I~V~~~~~~~~ 149 (320)
..+.|+.+|.+|+.+..+.+... -+-+.|.|.+.++|..|...|+ +..|.|..|+|.|+.....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 44789999999999998877653 3689999999999999999999 9999999999999865544
No 119
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.12 E-value=0.028 Score=47.27 Aligned_cols=55 Identities=20% Similarity=0.426 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
..|...++.||+|.+|.++-. --|.|.|.+..+|=+|+.+++. ..-|..+.+.|-
T Consensus 105 ~sV~~~Ls~fGpI~SVT~cGr------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 105 KSVIQRLSVFGPIQSVTLCGR------QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred HHHHHHHHhcCCcceeeecCC------ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 567778899999999988753 4799999999999999999987 456777777764
No 120
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.88 E-value=0.0034 Score=59.37 Aligned_cols=83 Identities=22% Similarity=0.413 Sum_probs=59.9
Q ss_pred HHHhcCCCeeEEEEecCCC---C-CceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCCcchhhhhccccccc
Q 045807 87 EELSKYGEIESLNICDNLA---D-HMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVC 162 (320)
Q Consensus 87 ~~F~k~G~I~~v~i~~~~t---g-~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~~~~~~~~~~~~~ 162 (320)
+.|.+||.|..|.+....+ + ..---+||+|...++|..||+..+|..++|+.|++.+...+ -|-.|+...-
T Consensus 99 eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gttk-----ycs~~l~~~~ 173 (327)
T KOG2068|consen 99 EYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGTTK-----YCSFYLRNDI 173 (327)
T ss_pred ccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCCc-----chhHHhhhhc
Confidence 5688999999998865321 1 11124899999999999999999999999999998886532 2444444443
Q ss_pred CCCCcccccccc
Q 045807 163 NRGGYCNFMHLK 174 (320)
Q Consensus 163 ~~g~~~~~~~~~ 174 (320)
.....|-|+|..
T Consensus 174 c~~~~cmylhe~ 185 (327)
T KOG2068|consen 174 CQNPDCMYLHEI 185 (327)
T ss_pred ccCccccccccc
Confidence 444457777754
No 121
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=95.81 E-value=0.024 Score=57.11 Aligned_cols=7 Identities=86% Similarity=1.251 Sum_probs=2.5
Q ss_pred CCCCCCC
Q 045807 196 RSRSRSP 202 (320)
Q Consensus 196 rsRsrs~ 202 (320)
+|||+||
T Consensus 608 kSRSRSp 614 (757)
T KOG4368|consen 608 KSRSRSP 614 (757)
T ss_pred cccCCCc
Confidence 3333333
No 122
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.99 E-value=0.014 Score=53.40 Aligned_cols=72 Identities=25% Similarity=0.284 Sum_probs=55.1
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCC--------CCc----e
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLA--------DHM----V 109 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~t--------g~~----~ 109 (320)
+=+|+|.||++... + .-|+++|+.||.|-.|.|.. ..+ +.. -
T Consensus 74 ~GVvylS~IPp~m~--------------~-----------~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y 128 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMD--------------P-----------VRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLY 128 (278)
T ss_pred ceEEEeccCCCccC--------------H-----------HHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccc
Confidence 35789999875332 2 57889999999999998853 222 112 2
Q ss_pred eEEEEEECCHHHHHHHHHHhCCceeCCeeE
Q 045807 110 GNVYVQFREEEHAANALRNLNGRFYAGRPI 139 (320)
Q Consensus 110 G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I 139 (320)
--++|+|.+...|..+...|||..|+|+.-
T Consensus 129 ~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk~ 158 (278)
T KOG3152|consen 129 SEGWVEFISKRVAKRIAELLNNTPIGGKKK 158 (278)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCccCCCCC
Confidence 247899999999999999999999999753
No 123
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.98 E-value=0.049 Score=51.03 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeE
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPI 139 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I 139 (320)
.-|..+|++||.|++.....+ --+.+|.|...-+|++||. -||++|+|-.+
T Consensus 211 s~vL~~F~~cG~Vvkhv~~~n-----gNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 211 SIVLNLFSRCGEVVKHVTPSN-----GNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred hHHHHHHHhhCeeeeeecCCC-----CceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 568899999999988776532 2499999999999999999 89999998654
No 124
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.66 E-value=0.021 Score=56.28 Aligned_cols=58 Identities=22% Similarity=0.322 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
++|...|.+||+|..|.|-.. .--|.|+|.+..+|-.|+. ..+..|+++.|+|-|-.+
T Consensus 388 a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 388 ADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 899999999999999998654 1368999999999988877 899999999999999765
No 125
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.33 E-value=0.05 Score=57.09 Aligned_cols=66 Identities=29% Similarity=0.315 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCcee--CCeeEEEEeecCCCcch
Q 045807 81 FYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFY--AGRPIIVDFSPVTDFRE 151 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~--~Gr~I~V~~~~~~~~~~ 151 (320)
+--.|..+|++||.|..+|...+. -.|.|+|...+.|..|+++|+|+.+ .|-+.+|.|+....+.+
T Consensus 311 tSssL~~l~s~yg~v~s~wtlr~~-----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 311 TSSSLATLCSDYGSVASAWTLRDL-----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYE 378 (1007)
T ss_pred hHHHHHHHHHhhcchhhheecccc-----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccccc
Confidence 446789999999999999997753 4799999999999999999999875 68899999997765533
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.14 E-value=0.096 Score=55.42 Aligned_cols=59 Identities=22% Similarity=0.386 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC--eeEEEEeecC
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAG--RPIIVDFSPV 146 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~G--r~I~V~~~~~ 146 (320)
..|..+|..||+|..|.+-. ..-||||+|++...|+.|+..|-|..|+| +.|.|.|+..
T Consensus 470 ~~l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 470 SRLNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred HHHHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 57888999999999988754 34699999999999999999999999986 7799999853
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.02 E-value=0.0059 Score=63.82 Aligned_cols=61 Identities=30% Similarity=0.456 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCCeeEEEEe-cCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEE
Q 045807 82 YEDLFEELSKYGEIESLNIC-DNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVD 142 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~-~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~ 142 (320)
+.||...|..+|.|..|.|. ....+..+|+|||+|..+++|.+||....+..|+...|.|.
T Consensus 681 ~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~ 742 (881)
T KOG0128|consen 681 EEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAIS 742 (881)
T ss_pred CchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhee
Confidence 38999999999999988876 45678899999999999999999999777666664444443
No 128
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=93.29 E-value=0.24 Score=43.55 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYA 135 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~ 135 (320)
++||++++-+.|.|....|.+. |++.|+|...++.+-|+..|+...|.
T Consensus 129 WQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 129 WQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhcccccc
Confidence 4899999999999988888664 79999999999999999999988774
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.93 E-value=0.029 Score=58.89 Aligned_cols=70 Identities=21% Similarity=0.177 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 77 HFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 77 ~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+|.-+.+.|+.+|.++|.++++.++....|+++|.|||.|.++.+|..++..+++..+.-..+.|..+.+
T Consensus 745 pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 745 PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 3455669999999999999999998877899999999999999999999999999998888888888654
No 130
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=92.26 E-value=0.14 Score=47.03 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCc----eeCCeeEEEEe
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGR----FYAGRPIIVDF 143 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~----~~~Gr~I~V~~ 143 (320)
+.|.+.|..||+|....++-...+++.|-++|.|...-.|.+|+..++-. ...++++.|+-
T Consensus 46 dll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 46 DLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred HHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 78899999999999887766556777899999999999999999988432 23455555543
No 131
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=91.33 E-value=0.091 Score=39.31 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=13.7
Q ss_pred CCCCCeEEecCCCCCCCCCCC
Q 045807 40 PSISPTLLLSNMYQRPDMITP 60 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~ 60 (320)
|+.|+||+|+|||.+.+++.+
T Consensus 51 ~~aS~C~lLkNMFDP~~Ete~ 71 (73)
T PF15519_consen 51 PIASRCFLLKNMFDPAEETEP 71 (73)
T ss_dssp S---SEEEEESSS-TTCGGST
T ss_pred CCCCceeeeecCCCcccccCC
Confidence 578999999999998776443
No 132
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.23 E-value=0.24 Score=50.02 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=44.3
Q ss_pred HHHHHHHHhc--CCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCC--ceeCCeeEEEEe
Q 045807 82 YEDLFEELSK--YGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNG--RFYAGRPIIVDF 143 (320)
Q Consensus 82 eedL~~~F~k--~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG--~~~~Gr~I~V~~ 143 (320)
+|+|+.+|.. +=++.+|....+. .=||+|++..||+.|++.|.- +.|.|++|.+-+
T Consensus 189 ~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 189 IEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred HHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 4789999974 6778888876542 569999999999999998864 567888877654
No 133
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.16 E-value=0.5 Score=36.29 Aligned_cols=41 Identities=22% Similarity=0.444 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhC
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLN 130 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~ln 130 (320)
.||.++|+.||.|.--+|-. .-|||.....+.|..|+..+.
T Consensus 23 ~DI~qlFspfG~I~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 23 SDIYQLFSPFGQIYVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp HHHHHHCCCCCCEEEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred hhHHHHhccCCcEEEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 79999999999997666633 479999999999999999886
No 134
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=90.90 E-value=0.63 Score=46.63 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=50.9
Q ss_pred CCCCC-CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHh-cCCCeeEEEEec-CCCCCceeEEE
Q 045807 37 HTKPS-ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELS-KYGEIESLNICD-NLADHMVGNVY 113 (320)
Q Consensus 37 h~~p~-~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~-k~G~I~~v~i~~-~~tg~~~G~af 113 (320)
++.|. +.+||||..|.-+. ++ ++|-.+|+ -||.|..+-|.. +.-+-++|-|=
T Consensus 363 ~sq~lDprrTVFVGgvprpl--------------~A-----------~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGR 417 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPL--------------TA-----------EELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGR 417 (520)
T ss_pred cCcccCccceEEecCCCCcc--------------hH-----------HHHHHHHHHhcCceEEEEeccCcccCCCCCcce
Confidence 44443 56778888776432 22 67778887 699999998865 45667899999
Q ss_pred EEECCHHHHHHHHHH
Q 045807 114 VQFREEEHAANALRN 128 (320)
Q Consensus 114 V~F~~~e~A~~A~~~ 128 (320)
|+|.+..+-.+||.+
T Consensus 418 VtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 418 VTFSNQQAYIKAISA 432 (520)
T ss_pred eeecccHHHHHHHhh
Confidence 999999999999874
No 135
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=90.74 E-value=0.14 Score=49.02 Aligned_cols=28 Identities=36% Similarity=0.788 Sum_probs=25.5
Q ss_pred CccccCceeccCCCCCCccccCCCCCCC
Q 045807 15 RVNCPFYFKIGACRHGDRCSRLHTKPSI 42 (320)
Q Consensus 15 ~~~c~f~~k~g~cr~g~~cs~~h~~p~~ 42 (320)
-++|..|.++|.|++|.+|-+.|..+..
T Consensus 177 t~lC~~f~~tG~C~yG~rC~F~H~~~~~ 204 (332)
T KOG1677|consen 177 TKLCPKFQKTGLCKYGSRCRFIHGEPED 204 (332)
T ss_pred CcCCCccccCCCCCCCCcCeecCCCccc
Confidence 5789999999999999999999998743
No 136
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=90.57 E-value=1.2 Score=44.68 Aligned_cols=77 Identities=13% Similarity=0.174 Sum_probs=55.7
Q ss_pred CCCCCccccCCCCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec----
Q 045807 27 CRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD---- 102 (320)
Q Consensus 27 cr~g~~cs~~h~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~---- 102 (320)
|--|..+...+..|..|+-|||..|.+. .+|+.|...|..||.|. |.-+.
T Consensus 243 ~~~~~~~~~~~~~~~~S~KVFvGGlp~d-------------------------ise~~i~~~F~~FGs~~-VdWP~k~~~ 296 (520)
T KOG0129|consen 243 TWSGSLPPRGYRSPRYSRKVFVGGLPWD-------------------------ITEAQINASFGQFGSVK-VDWPGKANS 296 (520)
T ss_pred hhccccCCCCCCccccccceeecCCCcc-------------------------ccHHHHHhhcccccceE-eecCCCccc
Confidence 5567778888889999999999998751 23478999999999885 33331
Q ss_pred CCCCCcee---EEEEEECCHHHHHHHHHHh
Q 045807 103 NLADHMVG---NVYVQFREEEHAANALRNL 129 (320)
Q Consensus 103 ~~tg~~~G---~afV~F~~~e~A~~A~~~l 129 (320)
..--.++| |||+.|+++..++.-+.+.
T Consensus 297 ~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 297 RGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 11123466 9999999998877655543
No 137
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=90.48 E-value=0.4 Score=46.48 Aligned_cols=62 Identities=24% Similarity=0.235 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHhcCC----CeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeE
Q 045807 77 HFEDFYEDLFEELSKYG----EIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPI 139 (320)
Q Consensus 77 ~~~~~eedL~~~F~k~G----~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I 139 (320)
-|+.+..||.++|..-- -++.|..+....|+..|-|||.|..+++|+.|+.. |-..++-|-|
T Consensus 170 Pfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 170 PFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred CCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 36777899999997432 34456556655678899999999999999999983 3333443433
No 138
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=89.80 E-value=0.083 Score=55.88 Aligned_cols=63 Identities=10% Similarity=0.163 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
+.+|+..|..+|+|..|.|..+.-+....||||.|.+...+..|...|.+..|..-.+.+-+.
T Consensus 386 eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 386 ESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 478999999999999999976543444579999999999999999999998886545554443
No 139
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=89.12 E-value=0.26 Score=51.01 Aligned_cols=68 Identities=13% Similarity=0.040 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCCeeE-EEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 81 FYEDLFEELSKYGEIES-LNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~-v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
.+.++...|.+.-.|++ |.|..-.++...+.|||.|..++++.+|+..-...++..+.|.|.-.....
T Consensus 447 ~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 447 PIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYA 515 (944)
T ss_pred cccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHH
Confidence 34677888888777777 666656677888999999999999999998888888889999998765443
No 140
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.33 E-value=2.4 Score=31.08 Aligned_cols=53 Identities=23% Similarity=0.414 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEE
Q 045807 81 FYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIV 141 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V 141 (320)
+.+||+..+.+|+-. .|. ...| | -||.|.+..+|+.|+...+|+.|.+-.|.+
T Consensus 13 ~v~d~K~~Lr~y~~~-~I~--~d~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 13 TVEDFKKRLRKYRWD-RIR--DDRT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred cHHHHHHHHhcCCcc-eEE--ecCC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 348999999999854 333 3333 4 589999999999999999999988877654
No 141
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=87.64 E-value=0.91 Score=43.26 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=16.9
Q ss_pred CceeEEEEEECCHHHHHHHHHHhCCceeC
Q 045807 107 HMVGNVYVQFREEEHAANALRNLNGRFYA 135 (320)
Q Consensus 107 ~~~G~afV~F~~~e~A~~A~~~lnG~~~~ 135 (320)
...--+||-|..+.-|-+|+ .|-++.+.
T Consensus 171 slRT~v~vry~pe~iACaci-yLaAR~~e 198 (367)
T KOG0835|consen 171 SLRTDVFVRYSPESIACACI-YLAARNLE 198 (367)
T ss_pred ccccceeeecCHHHHHHHHH-HHHHhhhc
Confidence 34557889887665555444 46665554
No 142
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.16 E-value=1.3 Score=32.79 Aligned_cols=54 Identities=26% Similarity=0.422 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCC-----eeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 83 EDLFEELSKYGE-----IESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 83 edL~~~F~k~G~-----I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
.+|..++..-+. |-.|.|.. -|+||+-... .|..++..|++..+.|++|.|+.+
T Consensus 16 ~~iv~~i~~~~gi~~~~IG~I~I~~-------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 16 RDIVGAICNEAGIPGRDIGRIDIFD-------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp HHHHHHHHTCTTB-GGGEEEEEE-S-------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred HHHHHHHHhccCCCHHhEEEEEEee-------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 566666665543 45666654 3888887654 689999999999999999999864
No 143
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=85.97 E-value=0.9 Score=47.27 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=7.9
Q ss_pred EEEEECCHHHHH
Q 045807 112 VYVQFREEEHAA 123 (320)
Q Consensus 112 afV~F~~~e~A~ 123 (320)
+||.|.++..+.
T Consensus 695 ~~~k~~de~~~~ 706 (877)
T KOG0151|consen 695 NPVKYDDEDRDK 706 (877)
T ss_pred cccccchhhhHH
Confidence 777886665544
No 144
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=85.55 E-value=0.96 Score=43.40 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCC--eeEEEEecC-CCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 045807 80 DFYEDLFEELSKYGE--IESLNICDN-LADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDF 143 (320)
Q Consensus 80 ~~eedL~~~F~k~G~--I~~v~i~~~-~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~ 143 (320)
++-+||.+.+...|- |..++...+ ..|.++|||.|...+..+..+-++.|-.+.|-|..-.|.-
T Consensus 92 TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 92 TTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 445777777776663 444444443 4689999999999999999999999999999887655543
No 145
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=80.96 E-value=2 Score=42.25 Aligned_cols=59 Identities=19% Similarity=0.284 Sum_probs=43.8
Q ss_pred HHHHHHHhcC--CCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCc-eeCCeeEEEEeecCCC
Q 045807 83 EDLFEELSKY--GEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGR-FYAGRPIIVDFSPVTD 148 (320)
Q Consensus 83 edL~~~F~k~--G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~-~~~Gr~I~V~~~~~~~ 148 (320)
.||..+|... |--..+ |++ -||+||.+.++.-|.+|++.|+|+ .+.|+.+.|+++-.+.
T Consensus 16 sdl~svfg~ak~~~~g~f-l~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk 77 (584)
T KOG2193|consen 16 SDLESVFGDAKIPGSGQF-LVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK 77 (584)
T ss_pred HHHHHHhccccCCCCcce-eee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH
Confidence 6777777632 221222 222 389999999999999999999994 6889999999985543
No 146
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=78.45 E-value=8.8 Score=30.97 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=39.3
Q ss_pred HHHHHHHhcC-CCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC
Q 045807 83 EDLFEELSKY-GEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAG 136 (320)
Q Consensus 83 edL~~~F~k~-G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~G 136 (320)
++|..+.+.+ ..|..+.|++..+ ..+=.|.|+|.++.+|..=+..+||+.|+-
T Consensus 28 d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 28 DFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred HHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4555454544 3566778877443 245589999999999999999999999864
No 147
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=77.79 E-value=3.6 Score=35.95 Aligned_cols=43 Identities=21% Similarity=0.548 Sum_probs=29.9
Q ss_pred ceeEEEEEECCHHHHHHHHHHhCCceeC---C--eeEEEEeecCCCcc
Q 045807 108 MVGNVYVQFREEEHAANALRNLNGRFYA---G--RPIIVDFSPVTDFR 150 (320)
Q Consensus 108 ~~G~afV~F~~~e~A~~A~~~lnG~~~~---G--r~I~V~~~~~~~~~ 150 (320)
...-|||.|.+.+++..-+..++|..|- | -+-.|+|++-+.+.
T Consensus 54 ~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~~~~VE~Apyqk~p 101 (176)
T PF03467_consen 54 TYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEYPAVVEFAPYQKVP 101 (176)
T ss_dssp --EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EEEEEEEE-SS----
T ss_pred cceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCcceeEEEcchhccc
Confidence 3568999999999999999999997773 2 35568888765553
No 148
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=75.71 E-value=2.2 Score=40.18 Aligned_cols=63 Identities=14% Similarity=0.033 Sum_probs=48.3
Q ss_pred HHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 84 DLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 84 dL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
++..++.++|.+..+.+.. ......+|+++|.|...+.+..|+.......+.+..+...+...
T Consensus 104 ~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~ 167 (285)
T KOG4210|consen 104 EDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTR 167 (285)
T ss_pred cccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccc
Confidence 4556788899888777655 44567899999999999999999995444577777777766543
No 149
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=75.63 E-value=6.9 Score=31.85 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHH
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAA 123 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~ 123 (320)
+.|.+.|..|.+++ |..+.... ...|++.|+|...-...
T Consensus 32 ~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~Gf 70 (116)
T PF03468_consen 32 EELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWSGF 70 (116)
T ss_dssp HHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHHHH
T ss_pred HHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChHHH
Confidence 67788888899886 44433222 45799999998865433
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=75.54 E-value=0.43 Score=46.80 Aligned_cols=135 Identities=24% Similarity=0.299 Sum_probs=82.1
Q ss_pred HHHHHHhhCCCCCCccccCceeccCCCCCCccccCCC--CCC--CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHh--
Q 045807 2 AEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHT--KPS--ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQ-- 75 (320)
Q Consensus 2 ~~~~~~~~~~~~~~~~c~f~~k~g~cr~g~~cs~~h~--~p~--~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~-- 75 (320)
+..|.++||-.+-+.+=.|..|.|..+-. |+.-+- .|+ .|.-+-+.+-....+...+ ...-..++|
T Consensus 15 psdl~svfg~ak~~~~g~fl~k~gyafvd--~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~------kkqrsrk~Qir 86 (584)
T KOG2193|consen 15 PSDLESVFGDAKIPGSGQFLVKSGYAFVD--CPDQQWANKAIETLSGKVELQGKRQEVEHSVP------KKQRSRKIQIR 86 (584)
T ss_pred hHHHHHHhccccCCCCcceeeecceeecc--CCchhhhhhhHHhhchhhhhcCceeeccchhh------HHHHhhhhhHh
Confidence 46899999999999999999998765421 333221 221 2222222211110000000 000000111
Q ss_pred hh-HHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 76 DH-FEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 76 ~~-~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
.+ -..-++-|..+..+||.|..|.++... .....+-|+|...+.+..||..|||..|....++|.|.+.
T Consensus 87 nippql~wevld~Ll~qyg~ve~~eqvnt~--~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 87 NIPPQLQWEVLDSLLAQYGTVENCEQVNTD--SETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred cCCHHHHHHHHHHHHhccCCHhHhhhhccc--hHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 00 012246677788999999999875421 1235677899999999999999999999999999998753
No 151
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=74.56 E-value=9.4 Score=27.58 Aligned_cols=40 Identities=35% Similarity=0.500 Sum_probs=30.7
Q ss_pred HHHHHHHhcC----CCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHh
Q 045807 83 EDLFEELSKY----GEIESLNICDNLADHMVGNVYVQFREEEHAANALRNL 129 (320)
Q Consensus 83 edL~~~F~k~----G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~l 129 (320)
+||+..|..| ++ ..|..+.. --|-|.|.+.+.|..|+.+|
T Consensus 19 ~dI~~y~~~y~~~~~~-~~IEWIdD------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 19 DDIKAYFSEYFDEEGP-FRIEWIDD------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred HHHHHHHHHhcccCCC-ceEEEecC------CcEEEEECCHHHHHHHHHcC
Confidence 7888888888 54 45655553 25789999999999999865
No 152
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=72.15 E-value=2 Score=41.06 Aligned_cols=12 Identities=17% Similarity=0.686 Sum_probs=9.2
Q ss_pred ceeEEEEEECCH
Q 045807 108 MVGNVYVQFREE 119 (320)
Q Consensus 108 ~~G~afV~F~~~ 119 (320)
..||-||.|..+
T Consensus 159 alGFmYiRYtqp 170 (453)
T KOG2888|consen 159 ALGFMYIRYTQP 170 (453)
T ss_pred hheeeEEeecCC
Confidence 468999998765
No 153
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=70.88 E-value=9.6 Score=33.46 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCC--CceeEEEEEECCHHHHHHHHHHhCCceeCCeeEE
Q 045807 79 EDFYEDLFEELSKYGEIESLNICDNLAD--HMVGNVYVQFREEEHAANALRNLNGRFYAGRPII 140 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I~~v~i~~~~tg--~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~ 140 (320)
++..++|.+.-+ |++..|.+-....+ ..+|-+||+|.+.+.|.++++. .+..+.-..|.
T Consensus 120 d~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~ 180 (205)
T KOG4213|consen 120 DDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELK 180 (205)
T ss_pred HHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHH
Confidence 455577776666 89999988653322 5689999999999999987774 33333333333
No 154
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=70.77 E-value=6.4 Score=40.86 Aligned_cols=53 Identities=19% Similarity=0.069 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDF 143 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~ 143 (320)
+-+..+..++|.|..+..+. |+|..|.....+..|+..+.-..++|..+.+..
T Consensus 55 ~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 55 EFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred HHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 44566777889888776543 999999999999999999999999998876654
No 155
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=70.60 E-value=4.7 Score=35.41 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe-eEEEEeecC
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGR-PIIVDFSPV 146 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr-~I~V~~~~~ 146 (320)
.+...+|-+|-+.....+++ +.+++-|.|.+++.|..|...+++..|.|. .++..|++.
T Consensus 30 ~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 30 ALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred HHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 45666777777766655554 357889999999999999999999999998 787777754
No 156
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=66.18 E-value=9.8 Score=28.91 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=25.8
Q ss_pred CeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCcee
Q 045807 94 EIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFY 134 (320)
Q Consensus 94 ~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~ 134 (320)
.|.+|..+. +.+||+|||=.++.++..|++.+-+...
T Consensus 33 ~I~Si~~~~----~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAPD----SLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE-T----TSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEeC----CCceEEEEEeCCHHHHHHHHhcccceee
Confidence 466666554 3579999999999999999988877543
No 157
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.07 E-value=20 Score=35.82 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=40.8
Q ss_pred HHHHHHHhcC-CCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC
Q 045807 83 EDLFEELSKY-GEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAG 136 (320)
Q Consensus 83 edL~~~F~k~-G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~G 136 (320)
.||..++..| -.|..|.|++... ..+=.+.|+|.+..+|..=++.+||..|+-
T Consensus 89 ~Dll~F~~~~~~~I~~irivRd~~-pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 89 HDLLRFCASFIKQISDIRIVRDGM-PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred HHHHHHHHHHhhhhheeEEeecCC-CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 5666666654 4688899887322 224478999999999999999999999974
No 158
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=65.85 E-value=14 Score=37.62 Aligned_cols=56 Identities=13% Similarity=0.232 Sum_probs=40.5
Q ss_pred CCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCce---eC-CeeEEEEeecCC
Q 045807 92 YGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRF---YA-GRPIIVDFSPVT 147 (320)
Q Consensus 92 ~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~---~~-Gr~I~V~~~~~~ 147 (320)
.|.=.-+.++. -.+....|||||.|.+++++..+++++||+. |. .+...+.|+..+
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQ 473 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQ 473 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhh
Confidence 56555666653 2345678999999999999999999999964 33 455566676543
No 159
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=65.55 E-value=19 Score=26.02 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEec
Q 045807 79 EDFYEDLFEELSKYGEIESLNICD 102 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I~~v~i~~ 102 (320)
+.+..+|++.|+..|+|.-+.|-.
T Consensus 5 e~i~~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 5 EEITAEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEcc
Confidence 456689999999999998777743
No 160
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=65.07 E-value=5 Score=21.85 Aligned_cols=18 Identities=39% Similarity=0.903 Sum_probs=14.0
Q ss_pred ccCceeccCCCCCCccccCCC
Q 045807 18 CPFYFKIGACRHGDRCSRLHT 38 (320)
Q Consensus 18 c~f~~k~g~cr~g~~cs~~h~ 38 (320)
|.|+ ..|..++.|.+.|.
T Consensus 2 Ck~~---~~C~~~~~C~f~HP 19 (19)
T PF14608_consen 2 CKFG---PNCTNGDNCPFSHP 19 (19)
T ss_pred CcCc---CCCCCCCcCccCCc
Confidence 6766 34999999999883
No 161
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=61.51 E-value=16 Score=34.54 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCCeeEEEEecCC--------CCCceeEEEEEECCHHHHHHHHH----HhCC--ceeCCeeEEEEeec
Q 045807 83 EDLFEELSKYGEIESLNICDNL--------ADHMVGNVYVQFREEEHAANALR----NLNG--RFYAGRPIIVDFSP 145 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~--------tg~~~G~afV~F~~~e~A~~A~~----~lnG--~~~~Gr~I~V~~~~ 145 (320)
-.+...|.+||+|++|.|+... .....--+.+.|-+.+.|..=+. .|.- ..+.-..|.|.|..
T Consensus 30 h~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 30 HSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEE
Confidence 5677789999999999998643 22334578899999887764332 2221 34566777777764
No 162
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=60.40 E-value=5.6 Score=37.85 Aligned_cols=29 Identities=28% Similarity=0.639 Sum_probs=21.0
Q ss_pred CHHHHHHhhCCCCC------------CccccCceeccCCCCC
Q 045807 1 MAEHLASIFGTEKD------------RVNCPFYFKIGACRHG 30 (320)
Q Consensus 1 ~~~~~~~~~~~~~~------------~~~c~f~~k~g~cr~g 30 (320)
||+-|....|+.-+ +..|.+|+- |+|||-
T Consensus 5 mR~mLdqLMGs~r~~~~~~~~v~~~D~~VC~~fLv-g~CPHD 45 (319)
T KOG0796|consen 5 MRAMLDQLMGSNRDGDETRQRVKFDDPDVCKSFLV-GFCPHD 45 (319)
T ss_pred HHHHHHHHhCCCcCCCcccCCCCCCchhHHHHHHh-CCCcHH
Confidence 56677777776544 556888875 999984
No 163
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=59.38 E-value=21 Score=38.88 Aligned_cols=36 Identities=19% Similarity=0.512 Sum_probs=30.4
Q ss_pred CceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 045807 107 HMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDF 143 (320)
Q Consensus 107 ~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~ 143 (320)
+.+||.||+-..+.+...||+.|-+.+.. +.|.|-.
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~-~~~lVPi 243 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN-RILLVPI 243 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec-cEEEEeh
Confidence 56899999999999999999999998877 5555544
No 164
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.45 E-value=6 Score=38.32 Aligned_cols=25 Identities=40% Similarity=0.954 Sum_probs=23.0
Q ss_pred ccccCceeccCCCCCCccccCCCCCC
Q 045807 16 VNCPFYFKIGACRHGDRCSRLHTKPS 41 (320)
Q Consensus 16 ~~c~f~~k~g~cr~g~~cs~~h~~p~ 41 (320)
.+|-+|.+ |.|.+|+.|-+.|..|.
T Consensus 9 tic~~~~~-g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQK-GNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhccc-ccccccceeeeeccCch
Confidence 78988887 99999999999999994
No 165
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=50.31 E-value=7.4 Score=37.42 Aligned_cols=24 Identities=38% Similarity=1.013 Sum_probs=13.8
Q ss_pred cccCceeccCCCCCCccccCCCCC
Q 045807 17 NCPFYFKIGACRHGDRCSRLHTKP 40 (320)
Q Consensus 17 ~c~f~~k~g~cr~g~~cs~~h~~p 40 (320)
.|.||.+.|.|-.+..|.++|.-|
T Consensus 107 ec~ff~~~g~c~~~~~c~y~h~dp 130 (325)
T KOG1040|consen 107 ECKFFSLFGECTNGKDCPYLHGDP 130 (325)
T ss_pred cccccccccccccccCCcccCCCh
Confidence 455555555555555555555554
No 166
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=50.13 E-value=7 Score=34.81 Aligned_cols=27 Identities=33% Similarity=0.634 Sum_probs=24.8
Q ss_pred CccccCceeccCCCCCCccccCCCCCC
Q 045807 15 RVNCPFYFKIGACRHGDRCSRLHTKPS 41 (320)
Q Consensus 15 ~~~c~f~~k~g~cr~g~~cs~~h~~p~ 41 (320)
++.|--|-.||.|-|||.|-++|..-.
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~D 167 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRSD 167 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhhh
Confidence 889999999999999999999997764
No 167
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=48.12 E-value=23 Score=26.13 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=39.8
Q ss_pred HHHHHHHhcCC-CeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 83 EDLFEELSKYG-EIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 83 edL~~~F~k~G-~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
+.|.+.|.++| +|..|..+. ..+..+.-..||+.....+... .|+=+.+.|+.|.|+-.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 35777888888 577777665 3455667788888876543322 45556778888888753
No 168
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=47.71 E-value=59 Score=27.54 Aligned_cols=47 Identities=17% Similarity=0.074 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCC-eeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCc
Q 045807 82 YEDLFEELSKYGE-IESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGR 132 (320)
Q Consensus 82 eedL~~~F~k~G~-I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~ 132 (320)
.+.|.......|- |.+|.++.. ..||+||+.....++..|+..+.|.
T Consensus 22 ~~~L~~~~~~~~~~i~~i~vp~~----fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 22 ALMLAMRAKKENLPIYAILAPPE----LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred HHHHHHHHHhCCCcEEEEEccCC----CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 3455555542221 667777653 4699999999888999999888763
No 169
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=47.51 E-value=30 Score=25.33 Aligned_cols=59 Identities=14% Similarity=0.238 Sum_probs=40.2
Q ss_pred HHHHHHHhcCC-CeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 83 EDLFEELSKYG-EIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 83 edL~~~F~k~G-~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
++|.+.|...| +|..|.-+. ..+..+.-..||+.+...+ ..+.++=+.+.+..|.|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecC
Confidence 45667777777 566666554 3366677889999887655 33345556778888988864
No 170
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=45.89 E-value=9 Score=37.67 Aligned_cols=29 Identities=31% Similarity=0.762 Sum_probs=23.8
Q ss_pred CCCCCccccCceeccCCCCCCccccCCCCC
Q 045807 11 TEKDRVNCPFYFKIGACRHGDRCSRLHTKP 40 (320)
Q Consensus 11 ~~~~~~~c~f~~k~g~cr~g~~cs~~h~~p 40 (320)
|++.-+.|+||.. |-||.|.-|-..|-.-
T Consensus 136 Th~sMkpC~ffLe-g~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 136 THESMKPCKFFLE-GRCRFGENCRFSHGLD 164 (486)
T ss_pred cchhhccchHhhc-cccccCcccccccCcc
Confidence 4455678999987 9999999999988654
No 171
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=44.98 E-value=57 Score=33.15 Aligned_cols=70 Identities=23% Similarity=0.269 Sum_probs=51.1
Q ss_pred CCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeE-EEEEE
Q 045807 38 TKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGN-VYVQF 116 (320)
Q Consensus 38 ~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~-afV~F 116 (320)
..|.+.+--+|.||.+-... .....|..+-.+||+|..++| |. -.|.-
T Consensus 27 lPPGP~~lPiIGnl~~l~~~----------------------~~h~~~~~ls~~yGpi~tl~l---------G~~~~Vvi 75 (489)
T KOG0156|consen 27 LPPGPPPLPIIGNLHQLGSL----------------------PPHRSFRKLSKKYGPVFTLRL---------GSVPVVVI 75 (489)
T ss_pred CCcCCCCCCccccHHHcCCC----------------------chhHHHHHHHHHhCCeEEEEe---------cCceEEEE
Confidence 34556667788998762221 123567777789999999888 33 36777
Q ss_pred CCHHHHHHHHHHhCCceeCCeeE
Q 045807 117 REEEHAANALRNLNGRFYAGRPI 139 (320)
Q Consensus 117 ~~~e~A~~A~~~lnG~~~~Gr~I 139 (320)
.+.+.|..|+. -+|..|.+|+.
T Consensus 76 ss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 76 SSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred CCHHHHHHHHH-hCCccccCCCC
Confidence 88899999988 67899999986
No 172
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=43.90 E-value=1.1e+02 Score=27.09 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=3.3
Q ss_pred EEecCCC
Q 045807 46 LLLSNMY 52 (320)
Q Consensus 46 l~i~Nl~ 52 (320)
|+|.||.
T Consensus 13 VYVGnL~ 19 (195)
T KOG0107|consen 13 VYVGNLG 19 (195)
T ss_pred EEeccCC
Confidence 4445544
No 173
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=43.18 E-value=26 Score=33.01 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=26.5
Q ss_pred EEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 112 VYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 112 afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
|||+|.++.+|+.|++.+.... +..+.|..+++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999999766543 355677777654
No 174
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=41.59 E-value=2.7e+02 Score=29.30 Aligned_cols=35 Identities=6% Similarity=0.189 Sum_probs=29.8
Q ss_pred eEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 110 GNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 110 G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
.|.||+-.. ..|...+..|++..+.|++|.|+.+.
T Consensus 527 ~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 527 SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred CceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 488998764 55888999999999999999999864
No 175
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=40.63 E-value=15 Score=37.44 Aligned_cols=23 Identities=39% Similarity=0.907 Sum_probs=18.8
Q ss_pred ccccCceeccCCCCCCccccCCCC
Q 045807 16 VNCPFYFKIGACRHGDRCSRLHTK 39 (320)
Q Consensus 16 ~~c~f~~k~g~cr~g~~cs~~h~~ 39 (320)
+.||=|-| |.|..||.|.|.|-.
T Consensus 237 tpCPefrk-G~C~rGD~CEyaHgv 259 (528)
T KOG1595|consen 237 TPCPEFRK-GSCERGDSCEYAHGV 259 (528)
T ss_pred ccCccccc-CCCCCCCccccccce
Confidence 46777665 999999999999953
No 176
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=37.94 E-value=13 Score=34.36 Aligned_cols=28 Identities=25% Similarity=0.579 Sum_probs=23.2
Q ss_pred CCCCCccccCceeccCCCCCCccccCCCC
Q 045807 11 TEKDRVNCPFYFKIGACRHGDRCSRLHTK 39 (320)
Q Consensus 11 ~~~~~~~c~f~~k~g~cr~g~~cs~~h~~ 39 (320)
|...-..|-+|.. ++|..|--|+.+|..
T Consensus 148 T~~rea~C~~~e~-~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 148 TDFREAICGQFER-TECSRGGACNFMHVK 175 (260)
T ss_pred Cchhhhhhccccc-ccCCCCCcCcchhhh
Confidence 4455667888887 599999999999988
No 177
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=36.75 E-value=1.6e+02 Score=21.24 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhC
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLN 130 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~ln 130 (320)
.+|.+.+.++| +.-..|.-.. .-+++|+-+.+...++.++..|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG---~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG---GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS---SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC---CCCeEEEEECCHHHHHHHHHHHH
Confidence 56777778999 5555554321 12689999999999998888774
No 178
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=35.39 E-value=7.6 Score=36.36 Aligned_cols=64 Identities=28% Similarity=0.401 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCCeeEEEEec--C----CCCCc-----eeE---------EEEEECCHHHHHHHHHHhCCcee----CC-
Q 045807 82 YEDLFEELSKYGEIESLNICD--N----LADHM-----VGN---------VYVQFREEEHAANALRNLNGRFY----AG- 136 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~--~----~tg~~-----~G~---------afV~F~~~e~A~~A~~~lnG~~~----~G- 136 (320)
++-|...|+.||.|..|.|+. + .+++. .|| |||+|.....-..|+.+|-|..+ +|
T Consensus 175 e~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d~~ 254 (445)
T KOG2891|consen 175 EDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGDDG 254 (445)
T ss_pred HHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcCCc
Confidence 467899999999999998863 2 13332 333 35666666666678888877654 22
Q ss_pred ---eeEEEEeec
Q 045807 137 ---RPIIVDFSP 145 (320)
Q Consensus 137 ---r~I~V~~~~ 145 (320)
-.|+|+|-.
T Consensus 255 ffqanvkvdfdr 266 (445)
T KOG2891|consen 255 FFQANVKVDFDR 266 (445)
T ss_pred ccccccccccch
Confidence 356777753
No 179
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=32.28 E-value=20 Score=34.04 Aligned_cols=28 Identities=25% Similarity=0.576 Sum_probs=24.1
Q ss_pred CccccCceeccCCCC-CCccccCCCCCCC
Q 045807 15 RVNCPFYFKIGACRH-GDRCSRLHTKPSI 42 (320)
Q Consensus 15 ~~~c~f~~k~g~cr~-g~~cs~~h~~p~~ 42 (320)
-.+|-+|.++|.|.+ |+.|-+.|-.-..
T Consensus 132 t~lc~~~~~~g~c~y~ge~crfah~~~e~ 160 (332)
T KOG1677|consen 132 TPLCRSFRKSGTCKYRGEQCRFAHGLEEL 160 (332)
T ss_pred CCcceeeecCccccccCchhhhcCCcccc
Confidence 568999999999999 9999998866543
No 180
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.24 E-value=1.9e+02 Score=30.09 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhC--Ccee------CCeeEEEEeecCCC
Q 045807 80 DFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLN--GRFY------AGRPIIVDFSPVTD 148 (320)
Q Consensus 80 ~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~ln--G~~~------~Gr~I~V~~~~~~~ 148 (320)
+|-+.|.+.|..-+-|..|.+..+ ||.++.+....-+......+. +..+ .|++|.|+|+++..
T Consensus 58 eiA~~i~~~l~~~~~~~~veiaGp------gfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNp 128 (577)
T COG0018 58 EIAEEIAEKLDTDEIIEKVEIAGP------GFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANP 128 (577)
T ss_pred HHHHHHHHhccccCcEeEEEEcCC------CEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCC
Confidence 344778888877667888888543 777777776555555545554 3333 58899999987543
No 181
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=29.36 E-value=1.8e+02 Score=22.64 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCC-CeeEEEEe------cCCCCCcee-EEEEEECCHHHHHHHHHH
Q 045807 78 FEDFYEDLFEELSKYG-EIESLNIC------DNLADHMVG-NVYVQFREEEHAANALRN 128 (320)
Q Consensus 78 ~~~~eedL~~~F~k~G-~I~~v~i~------~~~tg~~~G-~afV~F~~~e~A~~A~~~ 128 (320)
.+++.+.+..++.+.| .|..+..- .+..+...| |+++.|.-..++.+.++.
T Consensus 23 ~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 23 LLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 3455667777777765 66665432 233456677 689999877776666653
No 182
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=29.27 E-value=20 Score=34.45 Aligned_cols=24 Identities=38% Similarity=1.010 Sum_probs=20.8
Q ss_pred CccccCceeccCCCCCCccccCCCC
Q 045807 15 RVNCPFYFKIGACRHGDRCSRLHTK 39 (320)
Q Consensus 15 ~~~c~f~~k~g~cr~g~~cs~~h~~ 39 (320)
.+.|-+|.. |.|-.||+|.++|..
T Consensus 77 ~~vcK~~l~-glC~kgD~C~Flhe~ 100 (325)
T KOG1040|consen 77 KVVCKHWLR-GLCKKGDQCEFLHEY 100 (325)
T ss_pred ceeehhhhh-hhhhccCcCcchhhh
Confidence 677888875 999999999999964
No 183
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=28.99 E-value=85 Score=33.63 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=6.0
Q ss_pred CCeEEecCCCC
Q 045807 43 SPTLLLSNMYQ 53 (320)
Q Consensus 43 S~tl~i~Nl~~ 53 (320)
|.+|-+.||+.
T Consensus 108 s~iIrvlNlwq 118 (894)
T KOG0132|consen 108 SDIIRVLNLWQ 118 (894)
T ss_pred HHHHHhhhhhh
Confidence 45555555554
No 184
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=27.55 E-value=1.4e+02 Score=27.41 Aligned_cols=77 Identities=27% Similarity=0.407 Sum_probs=49.5
Q ss_pred HHHHHHhhCCCCCCccccCceec---------cCCCCCCccccCCCCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChh
Q 045807 2 AEHLASIFGTEKDRVNCPFYFKI---------GACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPR 72 (320)
Q Consensus 2 ~~~~~~~~~~~~~~~~c~f~~k~---------g~cr~g~~cs~~h~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~ 72 (320)
+|.|+...||++.+ |+|..| |---||..|+|+|..--....-||..=|.-+.+++. ...+++.
T Consensus 64 peeLa~fnGt~e~~---piyLaiLGsVfdVs~gk~hYgsG~sYnhFaGRDASrAFvsGdf~e~gl~d~-----v~gLs~d 135 (281)
T KOG1108|consen 64 PEELAKFNGTEEGR---PIYLAILGSVFDVSRGKKHYGSGCSYNHFAGRDASRAFVSGDFEEPGLADD-----VLGLSPD 135 (281)
T ss_pred HHHHhhccCCCCCC---ceeeeeeceeeeccCCeeeeCCCCCcccccccccchheecccCCCCcchhh-----hccCCHH
Confidence 78999999999996 334333 444589999999987765444555555665555443 2445665
Q ss_pred hHhhhHHHHHHHHHHHHhc
Q 045807 73 KIQDHFEDFYEDLFEELSK 91 (320)
Q Consensus 73 ~i~~~~~~~eedL~~~F~k 91 (320)
++.. ..+...+++|
T Consensus 136 Ells-----i~dWrsFY~k 149 (281)
T KOG1108|consen 136 ELLS-----IADWRSFYQK 149 (281)
T ss_pred HHhh-----hhhhhhhhhc
Confidence 5552 2555666665
No 185
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=27.51 E-value=77 Score=25.14 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=20.2
Q ss_pred CCceeEEEEEECCHHHHHHHHHHhC
Q 045807 106 DHMVGNVYVQFREEEHAANALRNLN 130 (320)
Q Consensus 106 g~~~G~afV~F~~~e~A~~A~~~ln 130 (320)
..-.-|.+|+|.+.+.+.+|+..|-
T Consensus 63 dE~VvFsW~~Y~skq~rDA~~~kmM 87 (117)
T COG5507 63 DEEVVFSWIEYPSKQVRDAANAKMM 87 (117)
T ss_pred CcEEEEEEEEcCchhHHHHHHHHhh
Confidence 3456799999999999988887664
No 186
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=26.57 E-value=46 Score=33.83 Aligned_cols=26 Identities=27% Similarity=0.622 Sum_probs=22.4
Q ss_pred CccccCceeccCCCCCCccccCCCCC
Q 045807 15 RVNCPFYFKIGACRHGDRCSRLHTKP 40 (320)
Q Consensus 15 ~~~c~f~~k~g~cr~g~~cs~~h~~p 40 (320)
..-||||..-|.|++|..|-.+...-
T Consensus 114 g~~Cp~f~s~G~Cp~G~~CRFl~aHl 139 (614)
T KOG2333|consen 114 GPSCPVFESLGFCPYGFKCRFLGAHL 139 (614)
T ss_pred CCccceeeccccCCccceeehhhccc
Confidence 47899999999999999998876644
No 187
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=26.21 E-value=56 Score=33.42 Aligned_cols=37 Identities=27% Similarity=0.457 Sum_probs=33.0
Q ss_pred ceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 108 MVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 108 ~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
...++++.|+++..+.+|+..++|..+.+..+.|...
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~ 98 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLG 98 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhc
Confidence 3479999999999999999999999999888877765
No 188
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=25.62 E-value=93 Score=29.64 Aligned_cols=45 Identities=11% Similarity=0.120 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEE---EEECCHHHHHHHHHHhCC
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVY---VQFREEEHAANALRNLNG 131 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~af---V~F~~~e~A~~A~~~lnG 131 (320)
.+|......|-+...-.++ +.+.-..| |.|++.|+-..-....-|
T Consensus 79 ~~~~~~l~~wdP~~dp~a~----gDPy~TLFv~RLnydT~EskLrreF~~YG 126 (335)
T KOG0113|consen 79 HKLERRLKLWDPNNDPNAI----GDPYKTLFVARLNYDTSESKLRREFEKYG 126 (335)
T ss_pred HHHHHHHHhcCCCCCCccc----CCccceeeeeeccccccHHHHHHHHHhcC
Confidence 4465566666555443333 22333444 578888776665555555
No 189
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.41 E-value=85 Score=22.84 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=22.2
Q ss_pred eEEEEEECCHHHHHHHHHHhCCceeCC
Q 045807 110 GNVYVQFREEEHAANALRNLNGRFYAG 136 (320)
Q Consensus 110 G~afV~F~~~e~A~~A~~~lnG~~~~G 136 (320)
.+.+|.|.+..+|.+|-+.|...-+..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 368999999999999999887765543
No 190
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=25.27 E-value=44 Score=31.93 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=5.9
Q ss_pred HHHHHHHHHhCC
Q 045807 120 EHAANALRNLNG 131 (320)
Q Consensus 120 e~A~~A~~~lnG 131 (320)
+.|++|+..+..
T Consensus 148 eeaq~~~~e~E~ 159 (319)
T KOG0796|consen 148 EEAQKAMKEVEE 159 (319)
T ss_pred HHHHHHHHHHHH
Confidence 455555554443
No 191
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=24.28 E-value=46 Score=31.40 Aligned_cols=28 Identities=36% Similarity=0.753 Sum_probs=23.4
Q ss_pred CccccCceeccCCCCCCccccCCCCCCCC
Q 045807 15 RVNCPFYFKIGACRHGDRCSRLHTKPSIS 43 (320)
Q Consensus 15 ~~~c~f~~k~g~cr~g~~cs~~h~~p~~S 43 (320)
.|+|.||.. |-|..|..|.++|..+..+
T Consensus 104 ~V~c~~~~~-g~c~s~~~c~~lh~~d~~~ 131 (285)
T COG5084 104 SVVCKFFLR-GLCKSGFSCEFLHEYDLRS 131 (285)
T ss_pred Ccccchhcc-ccCcCCCccccccCCCccc
Confidence 688888875 9999999999999877543
No 192
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=23.99 E-value=24 Score=24.68 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=20.9
Q ss_pred ceeEEEEEECC-HHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 108 MVGNVYVQFRE-EEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 108 ~~G~afV~F~~-~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
.+||+||...+ ..+..-+-..|++. ++|=.|.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A-~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGA-MDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS--TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCC-CCCCEEEEEEec
Confidence 46999999997 33333344456655 355567777665
No 193
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.33 E-value=27 Score=33.01 Aligned_cols=28 Identities=32% Similarity=0.615 Sum_probs=25.0
Q ss_pred CCccccCceeccCCCCCCccccCCCCCC
Q 045807 14 DRVNCPFYFKIGACRHGDRCSRLHTKPS 41 (320)
Q Consensus 14 ~~~~c~f~~k~g~cr~g~~cs~~h~~p~ 41 (320)
-+++|-=|-.||.|=+|+.|-++|..--
T Consensus 185 qpDicKdykeTgycg~gdSckFlh~r~D 212 (313)
T KOG1813|consen 185 QPDICKDYKETGYCGYGDSCKFLHDRSD 212 (313)
T ss_pred CchhhhhhHhhCcccccchhhhhhhhhh
Confidence 3899999999999999999999997654
No 194
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=22.99 E-value=1.4e+02 Score=30.46 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=34.0
Q ss_pred HHHHHHh----cCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhC
Q 045807 84 DLFEELS----KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLN 130 (320)
Q Consensus 84 dL~~~F~----k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~ln 130 (320)
+|..+|. .+|-|+.+.|.-.........+++.|.+.++|..|+..+-
T Consensus 205 dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 205 DLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred chHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 5556655 6899999887532222345678899999999999988764
No 195
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=22.79 E-value=3.9e+02 Score=22.04 Aligned_cols=66 Identities=15% Similarity=0.078 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCCCe-eEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 79 EDFYEDLFEELSKYGEI-ESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I-~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+.|...+.++|..+|.- ...+|+...-....|..=+.=...+.+.+|+-.+. .++|.+|.|.--.+
T Consensus 36 ~~I~~s~l~llG~~gta~~~~~lv~~~~~t~~GIvrc~R~~~~~v~aAL~l~~--~~~g~rv~I~~lgv 102 (124)
T COG1369 36 RLIRRSLLSLLGDVGTAKANPRLVKYYFSTGTGIVRCRREYVDLVRAALMLAR--EVNGKRVIIVVLGV 102 (124)
T ss_pred HHHHHHHHHHcCcccccccceeEEEEeccCCceEEEEechhHHHHHHHHHHHH--HhCCceEEEEEeec
Confidence 45666677777666642 33555542211346777777778888888888776 78888888776544
No 196
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=22.42 E-value=2.5e+02 Score=22.13 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHhcCCCeeEE-----EEecCCCCCceeEEEEEECCHHHHHHHHH
Q 045807 76 DHFEDFYEDLFEELSKYGEIESL-----NICDNLADHMVGNVYVQFREEEHAANALR 127 (320)
Q Consensus 76 ~~~~~~eedL~~~F~k~G~I~~v-----~i~~~~tg~~~G~afV~F~~~e~A~~A~~ 127 (320)
+.|.+-...+...|++||-=-=+ ..+.. ...+.-.+.|+|.+.+.|..++.
T Consensus 16 e~y~~Y~~~~~~a~~~~Ggr~LvRGG~v~~lEG-~w~ptr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 16 EQYKDYVSKAKPAIEKFGGRYLVRGGEVETLEG-EWRPTRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred HHHHHHHHHhHHHHHHhCCeeEeeCCCeeeccC-CCCcccEEEEEcCCHHHHHHHhc
Confidence 44556667777888888742111 11111 12223589999999998876643
No 197
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=22.37 E-value=49 Score=27.22 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 78 FEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 78 ~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
+..+...|..+....|.+.-..+- .++..++|.+++++..++. .....|+|..|.+.-..
T Consensus 31 ~~~l~~~l~~~W~~~~~~~i~~l~-------~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 31 LSALEQELAKIWKLKGGVKIRDLG-------DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWS 90 (153)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEeC-------CCeEEEEEEeccceeEEEe-cccccccccchhhhhhc
Confidence 355667777777776655544442 3799999999999998876 44456777766666543
No 198
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.67 E-value=57 Score=29.48 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=21.1
Q ss_pred HHHHHHHHHh-cCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 81 FYEDLFEELS-KYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 81 ~eedL~~~F~-k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
..++|.++|. .||+-.. +...+-|+||+|.+.
T Consensus 87 YLedL~~EF~~~~~~~~~-------~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 87 YLEDLAQEFDKSYGKNII-------QPASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHHHhcccccC-------CccCCCeeEEehhHH
Confidence 4478888886 4775321 113456999999875
No 199
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=21.61 E-value=1.5e+02 Score=23.28 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=19.7
Q ss_pred CeeEEEEec-CCCCCceeEEEEEECC
Q 045807 94 EIESLNICD-NLADHMVGNVYVQFRE 118 (320)
Q Consensus 94 ~I~~v~i~~-~~tg~~~G~afV~F~~ 118 (320)
+|+.|.|.. ...|+.+|+|-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 477888754 4457899999999987
No 200
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=21.49 E-value=53 Score=23.89 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=16.3
Q ss_pred EEEEEECCHHHHHHHHHHhC
Q 045807 111 NVYVQFREEEHAANALRNLN 130 (320)
Q Consensus 111 ~afV~F~~~e~A~~A~~~ln 130 (320)
.+|..|.+.++|..++..+.
T Consensus 46 ~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 46 KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred hhccCCCCHHHHHHHHHHhh
Confidence 68999999998888877653
No 201
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=21.31 E-value=1.6e+02 Score=22.43 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=19.2
Q ss_pred CeeEEEEec-CCCCCceeEEEEEECC
Q 045807 94 EIESLNICD-NLADHMVGNVYVQFRE 118 (320)
Q Consensus 94 ~I~~v~i~~-~~tg~~~G~afV~F~~ 118 (320)
+|++|.|.. ...+..+|||-|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 477888865 3448899999999976
No 202
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=20.98 E-value=2.7e+02 Score=24.80 Aligned_cols=56 Identities=13% Similarity=0.226 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCee
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRP 138 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~ 138 (320)
..+|..+..+|| |..+.+....++.+.-.+|+.=.+...+..|++.+....+.--.
T Consensus 44 lk~F~k~AkKyG-V~yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~~~~ 99 (204)
T PF12687_consen 44 LKEFKKEAKKYG-VDYAVKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLKKEK 99 (204)
T ss_pred HHHHHHHHHHcC-CceEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhhhhh
Confidence 356777788999 44555544333333447777777888888999988877665433
No 203
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=20.11 E-value=2.5e+02 Score=30.24 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=28.6
Q ss_pred ceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 108 MVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 108 ~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
..+.|||+|.+.-.|+.|.+........ ...+++++..
T Consensus 304 ~~~~aFVtf~sr~~A~~~aq~~~~~~~~--~w~~~~APeP 341 (728)
T KOG1134|consen 304 PLPAAFVTFKSRYGAAVAAQTQQSLNPT--KWLTEFAPEP 341 (728)
T ss_pred CCceEEEEEEeeHHHHHHHHhhhcCCCC--ceEEEecCCc
Confidence 4589999999999999999976655444 3556676554
Done!