Query 045807
Match_columns 320
No_of_seqs 353 out of 2079
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 09:37:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jmt_A Splicing factor U2AF 35 99.9 1.1E-23 3.8E-28 167.6 6.9 103 43-145 1-104 (104)
2 3pgw_S U1-70K; protein-RNA com 99.8 2.7E-20 9.1E-25 182.9 17.6 85 42-151 101-186 (437)
3 3s6e_A RNA-binding protein 39; 99.8 7.3E-21 2.5E-25 153.9 9.8 96 38-151 2-97 (114)
4 3v4m_A Splicing factor U2AF 65 99.8 5.1E-21 1.8E-25 152.4 8.5 95 41-150 3-100 (105)
5 3u1l_A PRE-mRNA-splicing facto 99.8 9.6E-21 3.3E-25 171.8 9.8 127 15-147 70-229 (240)
6 2pe8_A Splicing factor 45; RRM 99.8 2E-20 7E-25 149.0 8.7 92 39-150 4-97 (105)
7 2dit_A HIV TAT specific factor 99.8 9.3E-20 3.2E-24 146.2 11.3 100 30-146 2-101 (112)
8 3ue2_A Poly(U)-binding-splicin 99.8 5.9E-20 2E-24 149.4 7.5 89 42-150 19-112 (118)
9 4fxv_A ELAV-like protein 1; RN 99.7 4.3E-17 1.5E-21 128.0 11.4 80 42-146 18-98 (99)
10 3s8s_A Histone-lysine N-methyl 99.7 5.5E-17 1.9E-21 129.9 11.6 83 40-147 3-86 (110)
11 3ns6_A Eukaryotic translation 99.7 1.2E-16 4.1E-21 125.4 9.4 85 42-145 5-91 (100)
12 2do4_A Squamous cell carcinoma 99.7 5E-16 1.7E-20 121.2 12.6 84 39-147 13-96 (100)
13 2lxi_A RNA-binding protein 10; 99.7 4.2E-17 1.4E-21 126.0 6.2 80 43-147 1-83 (91)
14 2dnz_A Probable RNA-binding pr 99.7 3.8E-16 1.3E-20 120.5 10.6 84 40-148 2-86 (95)
15 2cqc_A Arginine/serine-rich sp 99.7 4.8E-16 1.6E-20 119.8 11.0 83 38-145 10-93 (95)
16 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.9E-16 1.3E-20 117.9 10.2 81 39-144 3-84 (85)
17 4f25_A Polyadenylate-binding p 99.7 3.5E-16 1.2E-20 125.7 10.4 83 40-148 2-84 (115)
18 2x1f_A MRNA 3'-END-processing 99.7 7.1E-16 2.4E-20 119.5 11.4 83 42-149 1-84 (96)
19 3bs9_A Nucleolysin TIA-1 isofo 99.7 7E-16 2.4E-20 116.9 10.5 80 42-146 5-85 (87)
20 3ulh_A THO complex subunit 4; 99.7 7.2E-16 2.5E-20 121.6 11.0 80 41-145 27-106 (107)
21 3md1_A Nuclear and cytoplasmic 99.7 8.7E-16 3E-20 115.4 10.9 80 43-147 1-81 (83)
22 2krb_A Eukaryotic translation 99.6 2.2E-16 7.6E-21 118.7 7.5 79 43-141 1-80 (81)
23 2e5h_A Zinc finger CCHC-type a 99.6 7E-16 2.4E-20 118.8 10.3 82 39-145 12-94 (94)
24 1whw_A Hypothetical protein ri 99.6 8.2E-16 2.8E-20 119.6 10.8 85 40-149 5-90 (99)
25 2ywk_A Putative RNA-binding pr 99.6 6.7E-16 2.3E-20 119.1 9.8 81 40-145 13-93 (95)
26 2d9p_A Polyadenylate-binding p 99.6 8.5E-16 2.9E-20 120.5 10.5 84 39-148 11-94 (103)
27 2wbr_A GW182, gawky, LD47780P; 99.6 1.2E-15 4E-20 117.2 10.9 74 42-145 6-79 (89)
28 2nlw_A Eukaryotic translation 99.6 6.8E-16 2.3E-20 122.0 9.9 85 42-146 14-99 (105)
29 1x5t_A Splicing factor 3B subu 99.6 5.2E-16 1.8E-20 119.9 9.0 84 40-148 2-87 (96)
30 2cqb_A Peptidyl-prolyl CIS-tra 99.6 5.4E-16 1.8E-20 121.3 9.2 86 39-149 8-94 (102)
31 2cq0_A Eukaryotic translation 99.6 6.5E-16 2.2E-20 121.2 9.6 85 39-148 11-96 (103)
32 2lkz_A RNA-binding protein 5; 99.6 2.3E-16 7.7E-21 123.2 6.7 79 42-145 8-93 (95)
33 2dnh_A Bruno-like 5, RNA bindi 99.6 1.3E-15 4.5E-20 119.7 11.2 84 40-148 12-98 (105)
34 2dgo_A Cytotoxic granule-assoc 99.6 1.6E-15 5.6E-20 121.2 11.8 85 39-148 11-96 (115)
35 2a3j_A U1 small nuclear ribonu 99.6 7.1E-16 2.4E-20 126.7 9.7 84 42-148 28-111 (127)
36 1x5s_A Cold-inducible RNA-bind 99.6 7.3E-16 2.5E-20 120.6 9.4 86 38-148 7-93 (102)
37 2la6_A RNA-binding protein FUS 99.6 1.3E-15 4.3E-20 118.8 10.7 85 36-145 6-99 (99)
38 2fy1_A RNA-binding motif prote 99.6 1.3E-15 4.6E-20 122.7 11.0 85 40-149 4-88 (116)
39 1x5u_A Splicing factor 3B subu 99.6 1.2E-15 4E-20 120.0 10.3 85 39-148 11-96 (105)
40 2do0_A HnRNP M, heterogeneous 99.6 3.5E-15 1.2E-19 119.0 12.9 82 41-147 13-94 (114)
41 2cpz_A CUG triplet repeat RNA- 99.6 2.6E-15 8.8E-20 120.2 12.1 83 41-148 23-106 (115)
42 2cph_A RNA binding motif prote 99.6 1.9E-15 6.4E-20 119.1 11.1 85 39-148 11-98 (107)
43 1sjq_A Polypyrimidine tract-bi 99.6 7.9E-16 2.7E-20 122.4 8.8 84 37-150 10-95 (105)
44 1x4h_A RNA-binding protein 28; 99.6 2.4E-15 8.1E-20 119.3 11.4 85 39-148 11-102 (111)
45 2dnm_A SRP46 splicing factor; 99.6 8.9E-16 3E-20 120.4 8.8 84 40-148 10-94 (103)
46 2cq3_A RNA-binding protein 9; 99.6 3.7E-15 1.3E-19 116.8 12.3 86 38-149 10-95 (103)
47 2dgs_A DAZ-associated protein 99.6 2.3E-15 8E-20 117.1 10.8 83 40-148 7-90 (99)
48 2e5j_A Methenyltetrahydrofolat 99.6 1.1E-15 3.9E-20 118.7 9.0 94 25-147 1-94 (97)
49 1p27_B RNA-binding protein 8A; 99.6 1.6E-15 5.6E-20 119.4 9.9 81 42-147 22-103 (106)
50 3r27_A HnRNP L, heterogeneous 99.6 1.8E-15 6.1E-20 119.3 9.9 78 41-148 19-98 (100)
51 2cpf_A RNA binding motif prote 99.6 1.8E-15 6.2E-20 117.4 9.8 82 42-148 4-89 (98)
52 2kxn_B Transformer-2 protein h 99.6 1E-15 3.5E-20 125.8 8.8 85 39-148 42-127 (129)
53 2jrs_A RNA-binding protein 39; 99.6 1.9E-15 6.5E-20 120.3 10.0 82 41-147 24-106 (108)
54 1x4c_A Splicing factor, argini 99.6 4.7E-15 1.6E-19 117.6 12.3 74 41-145 13-91 (108)
55 2dgv_A HnRNP M, heterogeneous 99.6 2.3E-15 8E-20 115.3 10.0 81 41-147 6-86 (92)
56 2cpi_A CCR4-NOT transcription 99.6 2.5E-15 8.4E-20 119.9 10.4 85 39-148 11-102 (111)
57 1oo0_B CG8781-PA, drosophila Y 99.6 2.1E-15 7.2E-20 119.6 9.9 82 41-147 24-106 (110)
58 2cqi_A Nucleolysin TIAR; RNA r 99.6 5.6E-15 1.9E-19 115.8 11.9 83 40-148 12-94 (103)
59 2div_A TRNA selenocysteine ass 99.6 2.3E-15 7.8E-20 117.1 9.6 83 40-147 6-94 (99)
60 4a8x_A RNA-binding protein wit 99.6 2.7E-15 9.1E-20 113.8 9.7 81 42-147 3-85 (88)
61 1h2v_Z 20 kDa nuclear CAP bind 99.6 5E-15 1.7E-19 124.9 12.1 82 40-146 36-118 (156)
62 1x4d_A Matrin 3; structural ge 99.6 1.2E-15 4.2E-20 120.7 7.7 79 39-146 11-91 (102)
63 2dhg_A TRNA selenocysteine ass 99.6 2.4E-15 8.1E-20 118.0 9.3 84 40-148 6-91 (104)
64 2kt5_A RNA and export factor-b 99.6 3.4E-15 1.2E-19 121.1 10.5 84 40-148 32-115 (124)
65 1u6f_A Tcubp1, RNA-binding pro 99.6 3.6E-15 1.2E-19 123.1 10.8 84 41-149 40-124 (139)
66 2dng_A Eukaryotic translation 99.6 4.3E-15 1.5E-19 116.6 10.7 84 38-148 10-94 (103)
67 3p5t_L Cleavage and polyadenyl 99.6 7.4E-16 2.5E-20 118.2 6.0 67 81-147 14-83 (90)
68 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 6.1E-15 2.1E-19 121.4 11.9 81 39-144 59-140 (140)
69 1s79_A Lupus LA protein; RRM, 99.6 1.9E-15 6.5E-20 119.6 8.4 81 39-145 7-87 (103)
70 1x4a_A Splicing factor, argini 99.6 6.3E-15 2.2E-19 116.8 11.4 82 39-147 18-99 (109)
71 3ex7_B RNA-binding protein 8A; 99.6 2.2E-15 7.5E-20 122.4 8.9 81 42-147 21-102 (126)
72 1x4f_A Matrin 3; structural ge 99.6 2.4E-15 8.3E-20 120.9 8.9 95 24-148 6-103 (112)
73 2dgp_A Bruno-like 4, RNA bindi 99.6 3E-15 1E-19 117.8 9.1 85 39-148 9-97 (106)
74 2cpe_A RNA-binding protein EWS 99.6 4.3E-15 1.5E-19 118.4 9.8 84 40-148 12-104 (113)
75 2ek1_A RNA-binding protein 12; 99.6 1.6E-15 5.5E-20 116.9 7.0 79 42-145 14-93 (95)
76 1why_A Hypothetical protein ri 99.6 8.1E-15 2.8E-19 113.7 10.9 79 39-147 13-93 (97)
77 1p1t_A Cleavage stimulation fa 99.6 3.3E-15 1.1E-19 117.1 8.6 84 42-150 7-91 (104)
78 2dgw_A Probable RNA-binding pr 99.6 9.8E-15 3.3E-19 111.8 11.1 82 39-147 6-87 (91)
79 1wi8_A EIF-4B, eukaryotic tran 99.6 5.4E-15 1.9E-19 116.2 9.8 81 41-148 13-95 (104)
80 3ucg_A Polyadenylate-binding p 99.6 5.5E-15 1.9E-19 112.4 9.5 78 43-146 6-84 (89)
81 2err_A Ataxin-2-binding protei 99.6 4.2E-15 1.4E-19 118.3 9.1 87 35-147 21-107 (109)
82 2cqd_A RNA-binding region cont 99.6 8.9E-15 3E-19 117.2 10.9 82 40-147 14-96 (116)
83 2cqp_A RNA-binding protein 12; 99.6 4.2E-15 1.4E-19 115.3 8.7 81 41-146 13-94 (98)
84 2khc_A Testis-specific RNP-typ 99.6 3.6E-15 1.2E-19 119.8 8.2 79 41-144 38-117 (118)
85 3s7r_A Heterogeneous nuclear r 99.6 1.2E-14 4.1E-19 110.3 10.7 79 40-144 8-87 (87)
86 2cq1_A PTB-like protein L; RRM 99.6 8.8E-15 3E-19 115.4 10.3 79 41-149 13-93 (101)
87 3beg_B Splicing factor, argini 99.6 2.1E-15 7.3E-20 121.2 6.8 72 42-144 15-86 (115)
88 1nu4_A U1A RNA binding domain; 99.6 4.1E-15 1.4E-19 115.0 8.1 85 41-148 6-90 (97)
89 1wez_A HnRNP H', FTP-3, hetero 99.6 2.2E-15 7.6E-20 118.8 6.6 84 37-147 9-92 (102)
90 2dgx_A KIAA0430 protein; RRM d 99.6 8.7E-15 3E-19 113.6 9.8 83 42-147 8-90 (96)
91 1rk8_A CG8781-PA, CG8781-PA pr 99.6 9E-15 3.1E-19 124.7 10.8 81 42-147 71-152 (165)
92 2ad9_A Polypyrimidine tract-bi 99.6 5.8E-15 2E-19 120.0 8.9 80 41-150 29-110 (119)
93 1wex_A Hypothetical protein (r 99.6 6.9E-15 2.4E-19 116.7 9.0 79 41-149 13-93 (104)
94 1x4e_A RNA binding motif, sing 99.6 1.3E-15 4.5E-20 115.1 4.6 81 40-145 2-83 (85)
95 2dh8_A DAZ-associated protein 99.6 5.8E-15 2E-19 116.1 8.4 83 40-148 13-96 (105)
96 1x5o_A RNA binding motif, sing 99.6 1.9E-14 6.6E-19 114.8 11.5 81 41-146 23-111 (114)
97 2cq4_A RNA binding motif prote 99.6 5.9E-15 2E-19 117.9 8.1 79 42-146 24-103 (114)
98 2j76_E EIF-4B, EIF4B, eukaryot 99.6 4.8E-15 1.7E-19 116.0 7.3 80 40-146 16-97 (100)
99 2fc9_A NCL protein; structure 99.6 1.4E-14 4.6E-19 113.2 9.7 81 39-147 11-91 (101)
100 3n9u_C Cleavage and polyadenyl 99.6 1.5E-14 5.3E-19 122.7 10.6 80 43-147 55-137 (156)
101 2f3j_A RNA and export factor b 99.6 7.1E-15 2.4E-19 127.3 8.6 83 41-148 86-168 (177)
102 1wg5_A Heterogeneous nuclear r 99.6 1.5E-14 5.3E-19 114.0 9.7 84 40-149 12-96 (104)
103 2dnq_A RNA-binding protein 4B; 99.5 1.5E-14 5.3E-19 110.6 9.2 77 40-148 5-81 (90)
104 2cpy_A RNA-binding protein 12; 99.5 8.1E-15 2.8E-19 117.5 7.7 84 39-148 11-95 (114)
105 2lea_A Serine/arginine-rich sp 99.5 5E-15 1.7E-19 122.6 6.6 83 41-148 45-128 (135)
106 2rs2_A Musashi-1, RNA-binding 99.5 1.7E-14 5.9E-19 114.8 9.5 86 36-147 18-104 (109)
107 3md3_A Nuclear and cytoplasmic 99.5 4.4E-14 1.5E-18 118.2 12.5 82 39-145 83-165 (166)
108 2kn4_A Immunoglobulin G-bindin 99.5 1.8E-14 6.3E-19 121.3 10.1 84 40-148 67-151 (158)
109 1whx_A Hypothetical protein ri 99.5 1.2E-14 4.1E-19 116.2 8.5 77 43-149 10-86 (111)
110 3lqv_A PRE-mRNA branch site pr 99.5 1.9E-14 6.4E-19 115.0 9.7 80 40-146 5-84 (115)
111 2xnq_A Nuclear polyadenylated 99.5 3.2E-14 1.1E-18 110.8 10.8 77 38-146 17-94 (97)
112 2diu_A KIAA0430 protein; struc 99.5 1.3E-14 4.5E-19 112.5 8.4 76 42-147 7-84 (96)
113 2ytc_A PRE-mRNA-splicing facto 99.5 2.3E-14 7.9E-19 108.1 9.6 76 39-144 8-84 (85)
114 2mss_A Protein (musashi1); RNA 99.5 6.2E-15 2.1E-19 108.8 6.1 62 82-144 13-75 (75)
115 2dgt_A RNA-binding protein 30; 99.5 3.2E-14 1.1E-18 109.3 10.3 77 40-148 7-83 (92)
116 2db1_A Heterogeneous nuclear r 99.5 1.6E-14 5.3E-19 116.7 8.8 82 40-147 14-98 (118)
117 2jwn_A Embryonic polyadenylate 99.5 2.3E-14 7.8E-19 116.0 9.7 78 43-146 36-114 (124)
118 2cpj_A Non-POU domain-containi 99.5 2E-14 7E-19 111.9 9.0 80 39-148 11-90 (99)
119 2dgu_A Heterogeneous nuclear r 99.5 3.9E-14 1.3E-18 111.2 10.6 77 40-148 8-84 (103)
120 1x4g_A Nucleolysin TIAR; struc 99.5 2.8E-14 9.6E-19 113.1 9.9 78 40-147 22-99 (109)
121 2hgl_A HNRPF protein, heteroge 99.5 8.4E-15 2.9E-19 121.7 7.0 84 38-147 39-125 (136)
122 2dis_A Unnamed protein product 99.5 1.7E-14 5.7E-19 114.1 8.5 82 42-148 7-93 (109)
123 2cqg_A TDP-43, TAR DNA-binding 99.5 5.9E-14 2E-18 109.9 11.5 80 41-147 13-93 (103)
124 2dnp_A RNA-binding protein 14; 99.5 3.5E-14 1.2E-18 108.6 9.8 77 39-147 5-81 (90)
125 2la4_A Nuclear and cytoplasmic 99.5 1.7E-14 5.9E-19 112.6 8.2 77 40-146 24-100 (101)
126 1wel_A RNA-binding protein 12; 99.5 1.1E-14 3.8E-19 118.3 7.3 84 40-149 22-106 (124)
127 1uaw_A Mouse-musashi-1; RNP-ty 99.5 1.1E-14 3.7E-19 107.7 6.6 61 83-144 15-76 (77)
128 2jvo_A Nucleolar protein 3; nu 99.5 3E-14 1E-18 113.3 9.5 76 40-147 28-103 (108)
129 2m2b_A RNA-binding protein 10; 99.5 8E-15 2.7E-19 120.3 6.2 81 41-147 21-108 (131)
130 2jvr_A Nucleolar protein 3; RN 99.5 2.1E-14 7.1E-19 115.3 8.4 79 40-146 25-104 (111)
131 1x5p_A Negative elongation fac 99.5 6.3E-14 2.1E-18 108.8 10.9 79 39-149 11-89 (97)
132 2cpx_A Hypothetical protein FL 99.5 1.8E-14 6E-19 115.0 8.0 83 39-149 21-107 (115)
133 2ki2_A SS-DNA binding protein 99.5 2.9E-15 1E-19 114.4 3.2 67 82-149 15-82 (90)
134 2dnn_A RNA-binding protein 12; 99.5 8.3E-15 2.8E-19 117.2 6.0 81 42-149 15-95 (109)
135 1x4b_A Heterogeneous nuclear r 99.5 2.8E-14 9.5E-19 114.3 9.0 80 42-147 26-106 (116)
136 2cq2_A Hypothetical protein LO 99.5 2.5E-14 8.5E-19 115.3 8.1 65 81-150 40-109 (114)
137 1wf1_A RNA-binding protein RAL 99.5 4.1E-14 1.4E-18 112.4 9.1 76 41-147 25-100 (110)
138 2cpd_A Apobec-1 stimulating pr 99.5 1.1E-13 3.7E-18 107.7 11.2 76 41-148 13-90 (99)
139 2g4b_A Splicing factor U2AF 65 99.5 8.2E-14 2.8E-18 117.7 11.3 81 40-145 91-172 (172)
140 1fjc_A Nucleolin RBD2, protein 99.5 2.3E-14 7.9E-19 110.7 6.7 78 41-147 14-91 (96)
141 3dxb_A Thioredoxin N-terminall 99.5 2.3E-14 7.8E-19 127.6 7.6 72 79-150 140-216 (222)
142 2lmi_A GRSF-1, G-rich sequence 99.5 2.2E-14 7.5E-19 113.6 6.6 85 38-148 6-93 (107)
143 2i2y_A Fusion protein consists 99.5 8.7E-14 3E-18 116.5 10.6 80 39-147 69-148 (150)
144 3q2s_C Cleavage and polyadenyl 99.5 3E-14 1E-18 128.2 8.2 66 81-146 81-149 (229)
145 1fj7_A Nucleolin RBD1, protein 99.5 4.9E-15 1.7E-19 115.7 2.7 83 40-148 14-96 (101)
146 2hvz_A Splicing factor, argini 99.5 2.6E-14 8.9E-19 111.5 6.7 63 82-148 14-76 (101)
147 2kvi_A Nuclear polyadenylated 99.5 4.3E-14 1.5E-18 109.6 7.7 76 41-148 8-84 (96)
148 1fxl_A Paraneoplastic encephal 99.5 1.6E-13 5.6E-18 114.7 11.8 82 42-148 1-83 (167)
149 3zzy_A Polypyrimidine tract-bi 99.5 1.1E-13 3.7E-18 114.1 10.4 63 82-148 42-107 (130)
150 2bz2_A Negative elongation fac 99.5 5.9E-14 2E-18 114.1 8.5 64 82-150 51-114 (121)
151 2dha_A FLJ20171 protein; RRM d 99.5 1.3E-14 4.3E-19 118.6 4.5 82 42-149 22-107 (123)
152 2hgn_A Heterogeneous nuclear r 99.5 8.2E-15 2.8E-19 122.3 3.3 84 39-149 42-125 (139)
153 2cqh_A IGF-II mRNA-binding pro 99.5 5.8E-14 2E-18 107.9 7.8 78 40-148 5-84 (93)
154 2fc8_A NCL protein; structure 99.5 1.3E-13 4.5E-18 107.6 9.6 82 39-148 11-93 (102)
155 3nmr_A Cugbp ELAV-like family 99.5 2.6E-13 8.9E-18 114.6 12.1 80 40-144 92-174 (175)
156 3egn_A RNA-binding protein 40; 99.5 4.9E-14 1.7E-18 117.0 7.4 84 40-148 42-131 (143)
157 1b7f_A Protein (SXL-lethal pro 99.5 1.5E-13 5E-18 115.5 10.4 82 42-148 2-84 (168)
158 1b7f_A Protein (SXL-lethal pro 99.5 2.6E-13 9E-18 113.9 11.7 80 40-144 86-168 (168)
159 1wg1_A KIAA1579 protein, homol 99.5 1.2E-13 4E-18 105.4 8.5 77 42-149 4-80 (88)
160 1sjr_A Polypyrimidine tract-bi 99.5 1.1E-13 3.7E-18 118.3 9.0 64 82-148 60-125 (164)
161 1iqt_A AUF1, heterogeneous nuc 99.5 2.8E-14 9.5E-19 105.1 4.6 62 82-144 13-75 (75)
162 2lcw_A RNA-binding protein FUS 99.2 4.4E-15 1.5E-19 119.1 0.0 83 41-148 5-96 (116)
163 2qfj_A FBP-interacting repress 99.5 2.1E-13 7.3E-18 119.3 10.7 82 42-148 124-206 (216)
164 2e5i_A Heterogeneous nuclear r 99.5 3.1E-13 1.1E-17 110.5 10.6 62 82-148 39-103 (124)
165 2yh0_A Splicing factor U2AF 65 99.5 2.6E-13 8.8E-18 117.2 10.6 82 41-147 112-194 (198)
166 4f02_A Polyadenylate-binding p 99.5 3.2E-13 1.1E-17 119.3 11.4 81 42-147 14-95 (213)
167 2e44_A Insulin-like growth fac 99.5 2.6E-13 8.9E-18 104.7 9.3 78 42-147 14-92 (96)
168 1fxl_A Paraneoplastic encephal 99.4 3.9E-13 1.3E-17 112.4 10.8 79 41-144 86-167 (167)
169 2e5g_A U6 snRNA-specific termi 99.4 2.6E-13 9E-18 104.6 8.7 79 41-149 6-84 (94)
170 3md3_A Nuclear and cytoplasmic 99.4 3.4E-13 1.2E-17 112.7 9.8 79 44-147 1-79 (166)
171 2xs2_A Deleted in azoospermia- 99.4 1.3E-13 4.4E-18 107.8 6.3 79 42-147 8-86 (102)
172 4f02_A Polyadenylate-binding p 99.4 4.1E-13 1.4E-17 118.6 10.1 80 42-147 102-181 (213)
173 3tyt_A Heterogeneous nuclear r 99.4 4E-13 1.4E-17 118.8 10.0 77 42-147 3-80 (205)
174 3smz_A Protein raver-1, ribonu 99.4 7.1E-13 2.4E-17 121.4 11.6 87 41-151 182-268 (284)
175 2hgm_A HNRPF protein, heteroge 99.4 1.2E-13 4.2E-18 113.2 5.5 82 38-146 37-120 (126)
176 2cjk_A Nuclear polyadenylated 99.4 2.3E-13 8E-18 114.3 7.2 80 42-147 86-166 (167)
177 1fje_B Nucleolin RBD12, protei 99.4 4.4E-13 1.5E-17 113.8 8.5 79 40-147 96-174 (175)
178 2ghp_A U4/U6 snRNA-associated 99.4 7.7E-13 2.6E-17 121.7 10.7 83 40-147 207-291 (292)
179 1l3k_A Heterogeneous nuclear r 99.4 1.1E-12 3.7E-17 113.1 10.4 81 42-148 103-184 (196)
180 3d2w_A TAR DNA-binding protein 99.4 9.9E-13 3.4E-17 100.9 9.0 78 37-147 5-84 (89)
181 3pgw_A U1-A; protein-RNA compl 99.4 1.3E-12 4.3E-17 119.6 11.3 84 41-147 7-90 (282)
182 1l3k_A Heterogeneous nuclear r 99.4 1.3E-12 4.5E-17 112.5 10.0 82 39-146 9-91 (196)
183 2voo_A Lupus LA protein; RNA-b 99.4 1.5E-12 5.2E-17 114.0 10.1 77 43-145 109-185 (193)
184 2qfj_A FBP-interacting repress 99.4 1.3E-12 4.3E-17 114.4 8.8 82 42-148 27-109 (216)
185 2j8a_A Histone-lysine N-methyl 99.4 1.2E-12 4E-17 107.3 7.7 66 81-146 19-95 (136)
186 2d9o_A DNAJ (HSP40) homolog, s 99.3 4E-12 1.4E-16 100.1 9.9 62 81-148 30-91 (100)
187 2hzc_A Splicing factor U2AF 65 99.3 1.7E-12 5.7E-17 98.1 7.5 71 42-143 5-86 (87)
188 2dnl_A Cytoplasmic polyadenyla 99.3 1E-12 3.4E-17 105.2 6.4 77 42-146 7-87 (114)
189 1qm9_A Polypyrimidine tract-bi 99.3 9.4E-12 3.2E-16 107.8 12.3 77 42-147 119-197 (198)
190 2adc_A Polypyrimidine tract-bi 99.3 3.8E-12 1.3E-16 113.7 9.0 78 41-147 32-110 (229)
191 3pgw_A U1-A; protein-RNA compl 99.3 6.9E-12 2.4E-16 114.7 10.6 75 42-145 206-281 (282)
192 3smz_A Protein raver-1, ribonu 99.3 1.2E-11 3.9E-16 113.3 12.0 81 42-147 94-175 (284)
193 3nmr_A Cugbp ELAV-like family 99.3 8.4E-12 2.9E-16 105.2 9.3 80 42-146 2-87 (175)
194 1wf0_A TDP-43, TAR DNA-binding 99.3 2.6E-12 8.9E-17 97.6 5.4 74 42-148 4-79 (88)
195 3sde_A Paraspeckle component 1 99.3 1.1E-11 3.7E-16 112.9 10.5 81 42-147 95-179 (261)
196 2adc_A Polypyrimidine tract-bi 99.3 3.1E-11 1.1E-15 107.7 12.9 76 42-146 150-227 (229)
197 1qm9_A Polypyrimidine tract-bi 99.3 5.6E-12 1.9E-16 109.3 7.2 77 42-147 2-79 (198)
198 2cjk_A Nuclear polyadenylated 99.3 7.3E-12 2.5E-16 105.1 7.4 78 42-146 2-80 (167)
199 2ghp_A U4/U6 snRNA-associated 99.2 1.6E-11 5.5E-16 112.8 9.5 83 41-148 115-198 (292)
200 1fje_B Nucleolin RBD12, protei 99.2 2.1E-12 7.1E-17 109.5 2.6 83 39-147 9-91 (175)
201 3sde_A Paraspeckle component 1 99.2 3E-11 1E-15 110.0 8.8 77 40-146 19-95 (261)
202 3tyt_A Heterogeneous nuclear r 99.2 3.3E-11 1.1E-15 106.4 8.6 78 41-144 121-204 (205)
203 3tht_A Alkylated DNA repair pr 99.2 5.6E-11 1.9E-15 112.9 8.8 77 41-145 16-97 (345)
204 2yh0_A Splicing factor U2AF 65 99.1 1.5E-10 5.2E-15 99.6 8.3 75 42-147 3-88 (198)
205 2g4b_A Splicing factor U2AF 65 99.1 1.6E-10 5.5E-15 97.2 8.1 75 42-147 3-88 (172)
206 2dnr_A Synaptojanin-1; RRM dom 99.1 2.2E-10 7.4E-15 88.0 8.0 60 79-146 26-85 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.0 1.2E-09 4.2E-14 84.3 7.9 58 79-144 35-92 (95)
208 1owx_A Lupus LA protein, SS-B, 98.7 5.2E-08 1.8E-12 78.9 7.9 75 42-145 17-94 (121)
209 2l9w_A U4/U6 snRNA-associated- 97.9 3.9E-05 1.3E-09 60.6 8.2 73 42-144 20-97 (117)
210 1wey_A Calcipressin 1; structu 97.8 6.5E-05 2.2E-09 58.8 7.5 63 81-148 23-85 (104)
211 1wwh_A Nucleoporin 35, nucleop 97.1 0.0014 4.9E-08 52.4 7.2 55 83-143 38-93 (119)
212 3p3d_A Nucleoporin 53; structu 96.4 0.0026 9E-08 51.6 4.1 63 82-145 20-97 (132)
213 2i2y_A Fusion protein consists 95.8 0.0031 1E-07 51.7 1.8 40 106-146 10-50 (150)
214 2kn4_A Immunoglobulin G-bindin 95.6 0.0097 3.3E-07 48.9 4.1 34 98-132 3-36 (158)
215 1whv_A Poly(A)-specific ribonu 95.1 0.075 2.6E-06 40.9 7.3 41 83-130 30-70 (100)
216 1uw4_A UPF3X; nonsense mediate 94.5 0.22 7.4E-06 37.8 8.6 65 83-147 16-88 (91)
217 1m9o_A Tristetraproline; Cys3H 93.9 0.024 8.4E-07 41.2 2.0 27 14-40 11-37 (77)
218 2dhx_A Poly (ADP-ribose) polym 93.4 0.46 1.6E-05 36.8 8.6 71 42-145 7-82 (104)
219 3ctr_A Poly(A)-specific ribonu 91.8 0.1 3.5E-06 40.2 2.9 41 83-130 20-60 (101)
220 1m9o_A Tristetraproline; Cys3H 91.1 0.041 1.4E-06 40.0 0.0 25 16-40 51-75 (77)
221 2d9m_A Zinc finger CCCH-type d 90.6 0.064 2.2E-06 38.5 0.6 23 16-39 21-43 (69)
222 2cqe_A KIAA1064 protein; CCCH 90.0 0.098 3.4E-06 40.2 1.4 26 14-40 12-37 (98)
223 2cqe_A KIAA1064 protein; CCCH 89.3 0.15 5E-06 39.2 1.8 24 17-40 38-61 (98)
224 3pq1_A Poly(A) RNA polymerase; 89.1 0.22 7.4E-06 48.7 3.3 42 82-127 66-107 (464)
225 2d9n_A Cleavage and polyadenyl 88.5 0.12 4.3E-06 37.7 0.9 25 15-40 10-34 (77)
226 2rhk_C Cleavage and polyadenyl 88.3 0.19 6.4E-06 36.4 1.7 30 10-40 11-40 (72)
227 2d9n_A Cleavage and polyadenyl 87.3 0.21 7.1E-06 36.5 1.5 26 16-42 39-64 (77)
228 2l08_A Regulator of nonsense t 85.1 2.7 9.2E-05 32.1 6.7 38 109-146 53-95 (97)
229 2rhk_C Cleavage and polyadenyl 83.8 0.28 9.7E-06 35.4 0.7 27 15-42 44-70 (72)
230 2fc6_A Nuclear, target of EGR1 82.1 0.44 1.5E-05 31.8 1.0 29 15-43 20-48 (50)
231 3d2q_A Muscleblind-like protei 66.9 1.6 5.3E-05 31.1 0.7 24 16-40 7-31 (70)
232 3lpe_A Putative transcription 64.9 16 0.00054 27.1 6.1 46 83-132 27-73 (92)
233 3h7h_B Transcription elongatio 60.2 7.6 0.00026 30.0 3.6 36 94-133 40-75 (106)
234 3d2n_A Muscleblind-like protei 58.3 5.2 0.00018 29.5 2.2 25 16-41 10-35 (83)
235 3d2q_A Muscleblind-like protei 57.4 2.2 7.6E-05 30.2 0.1 24 15-40 42-65 (70)
236 3d45_A Poly(A)-specific ribonu 54.2 15 0.00053 35.9 5.5 42 83-131 454-495 (507)
237 2g0c_A ATP-dependent RNA helic 51.5 13 0.00044 26.1 3.4 54 83-144 16-74 (76)
238 2e5s_A Otthump00000018578; ZF- 51.0 3.1 0.00011 31.7 -0.1 21 17-38 22-43 (98)
239 2exu_A Transcription initiatio 50.1 9.9 0.00034 32.7 3.0 37 95-135 139-175 (200)
240 2e5s_A Otthump00000018578; ZF- 48.9 2.9 0.0001 31.8 -0.5 20 153-173 58-77 (98)
241 4e8u_A Putative uncharacterize 43.4 69 0.0024 26.7 7.1 38 83-122 36-75 (172)
242 2rpp_A Muscleblind-like protei 42.0 7.9 0.00027 28.9 0.9 25 16-41 18-43 (89)
243 3u9g_A Zinc finger CCCH-type a 34.8 17 0.00059 31.8 2.0 25 15-40 151-179 (229)
244 3kg0_A Snoab; polyketide, anth 32.0 1.8E+02 0.006 22.5 7.6 52 75-126 36-87 (128)
245 2e7g_A Putative ribosome-bindi 30.5 1.3E+02 0.0046 23.4 6.6 54 74-130 15-79 (129)
246 2eqg_A Tumor necrosis factor, 30.4 11 0.00037 24.3 0.0 23 14-36 15-37 (49)
247 3p8b_B Transcription antitermi 29.4 83 0.0028 25.1 5.3 34 95-132 33-66 (152)
248 2okq_A Hypothetical protein YB 28.0 2.3E+02 0.008 22.7 8.1 56 74-129 39-110 (141)
249 2okv_A Probable D-tyrosyl-tRNA 27.1 1.6E+02 0.0055 25.3 6.8 48 66-119 94-148 (209)
250 3ts2_A Protein LIN-28 homolog 26.5 9 0.00031 31.3 -1.1 28 83-117 2-29 (148)
251 2i9x_A Putative septation prot 25.7 80 0.0027 23.3 4.1 25 94-118 5-30 (87)
252 4bby_A Alkyldihydroxyacetoneph 22.1 82 0.0028 31.6 4.8 47 84-130 359-409 (658)
253 2ia9_A Putative septation prot 21.8 1E+02 0.0035 23.3 4.1 25 94-118 5-30 (100)
254 3e6i_A CYPIIE1, P450-J, cytoch 21.7 1.2E+02 0.0042 27.8 5.7 38 82-127 33-70 (476)
255 2i9z_A Putative septation prot 21.7 1E+02 0.0036 23.5 4.2 25 94-118 5-30 (105)
256 1wvf_A 4-cresol dehydrogenase 21.4 54 0.0018 31.8 3.2 43 85-127 218-262 (520)
257 2x4i_A CAG38848, uncharacteriz 20.6 2.7E+02 0.0094 21.5 6.4 21 2-22 51-71 (114)
258 3swz_A Steroid 17-alpha-hydrox 20.4 82 0.0028 29.4 4.2 48 83-139 33-80 (494)
259 4eyt_A Telomerase associated p 20.0 2.8E+02 0.0094 20.7 6.6 41 83-130 27-67 (129)
No 1
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.89 E-value=1.1e-23 Score=167.57 Aligned_cols=103 Identities=45% Similarity=0.900 Sum_probs=87.3
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHH-hcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEEL-SKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F-~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
|+||+|+|||++|.+.....+.....+++++|+++|++++++|+++| ++||+|+.|.|+.+.+++++|||||+|.++++
T Consensus 1 s~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~ 80 (104)
T 1jmt_A 1 SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 80 (104)
T ss_dssp CCEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHH
T ss_pred CcEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHH
Confidence 68999999998776643321111234678899999999999999999 99999999999987678899999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeec
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
|++|++.|||++|+|++|.|+|++
T Consensus 81 A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 81 AEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHHHCCCEECCEEEEEEEcC
Confidence 999999999999999999999974
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.84 E-value=2.7e-20 Score=182.88 Aligned_cols=85 Identities=18% Similarity=0.334 Sum_probs=74.1
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
++.+|||.||... +++++|.++|++||+|+.|.|+. ..++.++|||||+|.+.+
T Consensus 101 ~~~~lfV~nL~~~-------------------------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e 155 (437)
T 3pgw_S 101 AFKTLFVARVNYD-------------------------TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHER 155 (437)
T ss_pred CCCEEEEeCCCCC-------------------------CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHH
Confidence 4578999998752 23589999999999999999986 468899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCCCcch
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVTDFRE 151 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~~ 151 (320)
+|++||..|||.+|.|++|.|.|+.......
T Consensus 156 ~A~~Ai~~lng~~i~gr~i~V~~a~~~~~~~ 186 (437)
T 3pgw_S 156 DMHSAYKHADGKKIDGRRVLVDVERGRTVKG 186 (437)
T ss_pred HHHHHHHHcCCCEECCEEEEEEEeCCCCCCC
Confidence 9999999999999999999999997655433
No 3
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.84 E-value=7.3e-21 Score=153.87 Aligned_cols=96 Identities=26% Similarity=0.440 Sum_probs=83.9
Q ss_pred CCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEEC
Q 045807 38 TKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFR 117 (320)
Q Consensus 38 ~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~ 117 (320)
..|++|++|+|.||+.+.++.. .++|++|++||+++|++||+|++|.|+.+. ++|||||+|.
T Consensus 2 ~~p~ps~vv~L~Nm~~~~e~~d---------------~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~ 63 (114)
T 3s6e_A 2 VQPLATQCFQLSNMFNPQTEEE---------------VGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCP 63 (114)
T ss_dssp CCCCCCSEEEEESSCCTTTCCS---------------TTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECS
T ss_pred CCCCCCcEEEEECCCChHHccC---------------hhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEEC
Confidence 4678999999999998765421 256889999999999999999999997643 4899999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeecCCCcch
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSPVTDFRE 151 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~~ 151 (320)
+.++|++|++.|||++|+|++|.|+|+++..|..
T Consensus 64 ~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 64 SIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHN 97 (114)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEECHHHHHH
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHH
Confidence 9999999999999999999999999998776643
No 4
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.84 E-value=5.1e-21 Score=152.44 Aligned_cols=95 Identities=25% Similarity=0.484 Sum_probs=82.1
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCC---CCceeEEEEEEC
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLA---DHMVGNVYVQFR 117 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~t---g~~~G~afV~F~ 117 (320)
++|++|+|.||+.+.++. + ...|++|++||+++|++||+|++|.|+.+.. +.++|+|||+|.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~-----------~----d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~ 67 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELL-----------D----DEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFT 67 (105)
T ss_dssp SCCSEEEEESSCCGGGSS-----------S----HHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEES
T ss_pred CCCeEEEEECCCCHHHcc-----------C----hHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEEC
Confidence 478999999999765541 1 2568999999999999999999999987432 467899999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeecCCCcc
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSPVTDFR 150 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~ 150 (320)
+.++|++|++.|||++|+|++|.|+|+++..|.
T Consensus 68 ~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f~ 100 (105)
T 3v4m_A 68 SVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYH 100 (105)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEECHHHHH
T ss_pred CHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHHh
Confidence 999999999999999999999999999876653
No 5
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.83 E-value=9.6e-21 Score=171.77 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=88.1
Q ss_pred CccccCceeccCCCCCCccccCCCCCCCCCeEEec---CCCCCCC---CCCCCCCCC-------------CCCCChhh--
Q 045807 15 RVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLS---NMYQRPD---MITPGVDPQ-------------GQALDPRK-- 73 (320)
Q Consensus 15 ~~~c~f~~k~g~cr~g~~cs~~h~~p~~S~tl~i~---Nl~~~~~---~~~~~~~~~-------------~~~~d~~~-- 73 (320)
+..|+||.| |+|.+|+.|+|+|.+|+....+.+. ++.+... +.....+.. ...+....
T Consensus 70 ~~~C~ffak-G~C~~G~~C~y~H~lPt~~d~~~~~~~~~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~ 148 (240)
T 3u1l_A 70 LFFCLFFAK-GMCCLGPKCEYLHHIPDEEDIGKLALRTEVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNS 148 (240)
T ss_dssp CSBCHHHHT-TCCSCGGGCSSBBSCCCHHHHHHHHHHCSSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTT
T ss_pred CeEcCcccc-CCCCCCCCCCccCCCCCccchhhhcccccCcccccchhcccchhcccCcCccccCCceeecCCCChhhhc
Confidence 679999998 9999999999999999854443111 2222111 000000000 00111100
Q ss_pred HhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCcee------------CCeeEEE
Q 045807 74 IQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFY------------AGRPIIV 141 (320)
Q Consensus 74 i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~------------~Gr~I~V 141 (320)
..-....++++|+++|++||+|+.|.|+. .+|||||+|.+.++|+.|+++|+|..| .|+.|.|
T Consensus 149 ~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V 223 (240)
T 3u1l_A 149 KHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLV 223 (240)
T ss_dssp CCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEE
T ss_pred ccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEE
Confidence 00001347899999999999999999985 379999999999999999999999999 8999999
Q ss_pred EeecCC
Q 045807 142 DFSPVT 147 (320)
Q Consensus 142 ~~~~~~ 147 (320)
.|+...
T Consensus 224 ~wA~~~ 229 (240)
T 3u1l_A 224 KWANED 229 (240)
T ss_dssp EECC--
T ss_pred EEccCC
Confidence 999653
No 6
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.82 E-value=2e-20 Score=148.99 Aligned_cols=92 Identities=28% Similarity=0.434 Sum_probs=78.3
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecC-C-CCCceeEEEEEE
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDN-L-ADHMVGNVYVQF 116 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~-~-tg~~~G~afV~F 116 (320)
.+.+|+||+|.||+.+.++ .++++++|+++|++||+|+.|.|+.. . +++++|||||+|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l--------------------~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f 63 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEV--------------------DEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEF 63 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC-----------------------CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEE
T ss_pred CCCCCCEEEEEcCCChHHh--------------------hHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEE
Confidence 4678999999999965432 13467999999999999999999874 2 468899999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeEEEEeecCCCcc
Q 045807 117 REEEHAANALRNLNGRFYAGRPIIVDFSPVTDFR 150 (320)
Q Consensus 117 ~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~ 150 (320)
.+.++|++|++.|||++|+|++|.|.|+.+..|.
T Consensus 64 ~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f~ 97 (105)
T 2pe8_A 64 ERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFR 97 (105)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCHHHHH
T ss_pred CCHHHHHHHHHHHCCCEECCcEEEEEEcCHHHhh
Confidence 9999999999999999999999999999765553
No 7
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.3e-20 Score=146.17 Aligned_cols=100 Identities=27% Similarity=0.388 Sum_probs=86.0
Q ss_pred CCccccCCCCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCce
Q 045807 30 GDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMV 109 (320)
Q Consensus 30 g~~cs~~h~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~ 109 (320)
+..|+..|..|.+++||+|.||+.+.++. .-.+.|++++++|+++|++||+|..|.|+.. .++
T Consensus 2 s~g~~~~~~~~~~s~~l~l~Nl~~~~~~~--------------~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~---~~~ 64 (112)
T 2dit_A 2 SSGSSGGPSRMRHERVVIIKNMFHPMDFE--------------DDPLVLNEIREDLRVECSKFGQIRKLLLFDR---HPD 64 (112)
T ss_dssp CSSCCSCCCCCCSCCEEEEESSCCTTHHH--------------HCSHHHHHHHHHHHHHGGGTSCCSEEEEETT---CTT
T ss_pred CCcccCCCCCCCCceEEEEEcCCCHHHhc--------------cCHHHHHHHHHHHHHHHHccCCEeEEEEecC---CCC
Confidence 34578899999999999999998765421 1125688999999999999999999977543 368
Q ss_pred eEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 110 GNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 110 G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
|||||+|.+.++|++|++.|||..|+|++|.|.|+..
T Consensus 65 G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 65 GVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDG 101 (112)
T ss_dssp CEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCS
T ss_pred EEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 9999999999999999999999999999999999865
No 8
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.80 E-value=5.9e-20 Score=149.38 Aligned_cols=89 Identities=25% Similarity=0.497 Sum_probs=77.6
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCC-----CCCceeEEEEEE
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNL-----ADHMVGNVYVQF 116 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~-----tg~~~G~afV~F 116 (320)
+|+||+|.||+.+.++ .+++++||+++|++||+|.+|.|+.+. +++++|||||+|
T Consensus 19 ps~vl~L~Nm~~~~el--------------------~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F 78 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDI--------------------DDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEF 78 (118)
T ss_dssp SCCEEEEESCSCGGGC--------------------CTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEE
T ss_pred CCCEEEEECCCCHHHH--------------------HHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEE
Confidence 7899999999974432 245789999999999999999998632 457789999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeEEEEeecCCCcc
Q 045807 117 REEEHAANALRNLNGRFYAGRPIIVDFSPVTDFR 150 (320)
Q Consensus 117 ~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~ 150 (320)
.+.++|.+|++.|||++|+||+|.|.|+++..|.
T Consensus 79 ~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~f~ 112 (118)
T 3ue2_A 79 SIASETHKAIQALNGRWFAGRKVVAEVYDQERFD 112 (118)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEEECHHHHH
T ss_pred CCHHHHHHHHHHHCCCEECCcEEEEEEcChHhcc
Confidence 9999999999999999999999999999876664
No 9
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=4.3e-17 Score=127.98 Aligned_cols=80 Identities=24% Similarity=0.368 Sum_probs=71.5
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
...+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+.+
T Consensus 18 ~gt~lfV~nLp~~~-------------------------te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~ 72 (99)
T 4fxv_A 18 QGTNLIVNYLPQNM-------------------------TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAK 72 (99)
T ss_dssp CCSEEEEESCCTTC-------------------------CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHH
T ss_pred CCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHH
Confidence 45689999997522 3589999999999999999986 568999999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+|++|++.|||..|+|++|.|+|+.+
T Consensus 73 ~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 73 DAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCB
T ss_pred HHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 99999999999999999999999854
No 10
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.71 E-value=5.5e-17 Score=129.91 Aligned_cols=83 Identities=18% Similarity=0.145 Sum_probs=73.6
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~ 118 (320)
|.+..+|+|.||.... ++++|+++|++||+|..|.|+. ..|+.++|||||+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~-------------------------te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~ 57 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNV-------------------------RETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTS 57 (110)
T ss_dssp CSCCCEEEEESCCTTC-------------------------CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCCCcEEEEECCCCCC-------------------------CHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECC
Confidence 3467899999997522 3489999999999999999986 5679999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
.++|++|++.|||..|.|++|.|+++...
T Consensus 58 ~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 58 TRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 99999999999999999999999998644
No 11
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=1.2e-16 Score=125.35 Aligned_cols=85 Identities=11% Similarity=0.150 Sum_probs=74.8
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
.+.||+|.||+.-+ + +.+++++++|+++|++||+|..|.|+. ..|+.++|||||+|.+.+
T Consensus 5 ~~~~vfV~nLp~v~---------------~----~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~ 65 (100)
T 3ns6_A 5 SDQYIVVNGAPVIP---------------S----AKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMN 65 (100)
T ss_dssp GGGEEEEESCCCCB---------------G----GGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHH
T ss_pred cCcEEEEeCCCcCC---------------h----HHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHH
Confidence 46799999997411 1 335688899999999999999999986 567999999999999999
Q ss_pred HHHHHHHHhCCceeCC-eeEEEEeec
Q 045807 121 HAANALRNLNGRFYAG-RPIIVDFSP 145 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~G-r~I~V~~~~ 145 (320)
+|++|++.|||..|.| ++|.|.++.
T Consensus 66 ~A~~Ai~~lng~~~~g~r~l~V~~a~ 91 (100)
T 3ns6_A 66 DAKKIIKSFHGKRLDLKHRLFLYTMK 91 (100)
T ss_dssp HHHHHHHHHTTCBSSSSCBCEEEESH
T ss_pred HHHHHHHHhCCcccCCCeEEEEEECc
Confidence 9999999999999999 999999985
No 12
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5e-16 Score=121.20 Aligned_cols=84 Identities=23% Similarity=0.248 Sum_probs=74.4
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
.+..+.+|+|.||.... ++++|+++|++||+|..|.|+...++.++|||||+|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 67 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSC-------------------------TKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYEN 67 (100)
T ss_dssp SCCCCSCEEEESCCTTC-------------------------CHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred cCCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECC
Confidence 34567899999997522 34899999999999999999876688999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
.++|++|++.|||..|+|++|.|.|+..+
T Consensus 68 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 96 (100)
T 2do4_A 68 ESQASQAVMKMDGMTIKENIIKVAISNSG 96 (100)
T ss_dssp HHHHHHHHHHHTTEESSSCEEEEEECCCC
T ss_pred HHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 99999999999999999999999998654
No 13
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.67 E-value=4.2e-17 Score=125.96 Aligned_cols=80 Identities=15% Similarity=0.221 Sum_probs=70.2
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCC-CeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYG-EIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G-~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
|.+|+|.||+.. +++++|+++|++|| +|..|.|+. ..++.++|||||+|.+.+
T Consensus 1 S~~i~v~nLp~~-------------------------~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~ 55 (91)
T 2lxi_A 1 SNIVMLRMLPQA-------------------------ATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQ 55 (91)
T ss_dssp CCEEEEETCCSS-------------------------CCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHH
T ss_pred CCEEEEeCCCCC-------------------------CCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHH
Confidence 689999999753 23589999999999 899999986 568999999999999999
Q ss_pred HHHHHHHHhC-CceeCCeeEEEEeecCC
Q 045807 121 HAANALRNLN-GRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~ln-G~~~~Gr~I~V~~~~~~ 147 (320)
+|++|++.|+ +..|+|++|.|+|+.++
T Consensus 56 ~A~~Ai~~~~~~~~~~gr~i~V~~a~~~ 83 (91)
T 2lxi_A 56 DATRWMEANQHSLNILGQKVSMHYSDPK 83 (91)
T ss_dssp HHHHHHHTTTTEEEETTEEEEEECCCSC
T ss_pred HHHHHHHhcCCCeEECCEEEEEEEcCCC
Confidence 9999999884 57899999999998654
No 14
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=120.48 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=74.0
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~ 118 (320)
+..+.+|+|.||... .++++|+++|++||+|..|.|+. ..++.++|||||+|.+
T Consensus 2 ~~~~~~l~v~nlp~~-------------------------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 56 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFN-------------------------ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSD 56 (95)
T ss_dssp CSCCCEEEEESCCTT-------------------------CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESC
T ss_pred CCCCcEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECC
Confidence 456789999999752 23489999999999999999987 4578999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
.++|++|++.|||..|.|++|.|.|+..+.
T Consensus 57 ~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 57 SECARRALEQLNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp HHHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred HHHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence 999999999999999999999999986543
No 15
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.8e-16 Score=119.80 Aligned_cols=83 Identities=27% Similarity=0.278 Sum_probs=73.3
Q ss_pred CCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEE
Q 045807 38 TKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQF 116 (320)
Q Consensus 38 ~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F 116 (320)
..|..+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~-------------------------t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f 64 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYT-------------------------TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 64 (95)
T ss_dssp CSCCGGGCEEEESCCSSC-------------------------CHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEE
T ss_pred CCCCCCCEEEEECCCCCC-------------------------CHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEE
Confidence 345677899999997532 2489999999999999999986 56789999999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 117 REEEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 117 ~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
.+.++|++|+..|||..|+|++|.|.|+.
T Consensus 65 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 65 ENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp SSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 99999999999999999999999999985
No 16
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.66 E-value=3.9e-16 Score=117.87 Aligned_cols=81 Identities=22% Similarity=0.303 Sum_probs=72.1
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEEC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFR 117 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~ 117 (320)
.+..+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.
T Consensus 3 ~~~~~~~l~V~nl~~~~-------------------------~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 57 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEV-------------------------DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFE 57 (85)
T ss_dssp CCCCSSEEEEECCCTTC-------------------------CHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEES
T ss_pred CCCCCCEEEEECCCCCC-------------------------CHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEEC
Confidence 34577899999997522 2489999999999999999976 578889999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
+.++|++|++.|||..|+|++|.|+|+
T Consensus 58 ~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 58 LAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 999999999999999999999999997
No 17
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.66 E-value=3.5e-16 Score=125.74 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=70.1
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
|..+.+|+|.||.... ++++|+++|++||+|..|.|+.+. +.++|||||+|.+.
T Consensus 2 P~~~~~lfV~nLp~~~-------------------------te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~ 55 (115)
T 4f25_A 2 PLGSGNIFIKNLDKSI-------------------------DNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQ 55 (115)
T ss_dssp ---CCEEEEESCCTTC-------------------------CHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCH
T ss_pred CCCCCEEEECCCCCCC-------------------------CHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCH
Confidence 5567889999997522 348999999999999999998643 34799999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
++|++|++.|||..|.|++|.|.++....
T Consensus 56 ~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 56 EAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred HHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 99999999999999999999999986544
No 18
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.66 E-value=7.1e-16 Score=119.52 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=73.5
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
++.+|+|.||.... ++++|+++|++||.|..|.|+. ..++.++|||||+|.+.+
T Consensus 1 P~~~l~V~nLp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 55 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQ-------------------------TEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLE 55 (96)
T ss_dssp CCSEEEEESCCTTC-------------------------CHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHH
T ss_pred CCcEEEEECCCCCC-------------------------CHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHH
Confidence 46799999997522 2489999999999999999987 467899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
+|++|++.|||..|+|+.|.|.|+.....
T Consensus 56 ~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 56 SSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred HHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 99999999999999999999999977654
No 19
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.65 E-value=7e-16 Score=116.93 Aligned_cols=80 Identities=15% Similarity=0.323 Sum_probs=70.6
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecC-CCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDN-LADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~-~tg~~~G~afV~F~~~e 120 (320)
.+.+|+|.||.... ++++|+++|++||+|..|.|+.+ .++.++|||||+|.+.+
T Consensus 5 ~~~~l~v~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 59 (87)
T 3bs9_A 5 SHFHVFVGDLSPEI-------------------------TTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 59 (87)
T ss_dssp -CEEEEEESCCTTC-------------------------CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CceEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHH
Confidence 45789999997522 34899999999999999999874 68899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+|++|++.|||..|+|+.|.|.|+..
T Consensus 60 ~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 60 DAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred HHHHHHHHcCCCEECCeEEEEEecCC
Confidence 99999999999999999999999864
No 20
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=7.2e-16 Score=121.62 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=71.9
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
..+.+|+|.||.... ++++|+++|++||+|+.|.|+...++.++|||||+|.+.+
T Consensus 27 ~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 81 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGV-------------------------SDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKA 81 (107)
T ss_dssp CCSEEEEEESCCTTC-------------------------CHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred CCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHH
Confidence 456889999997522 3489999999999999999987668999999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeec
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
+|++|++.|||..|.|++|.|.|+.
T Consensus 82 ~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 82 DALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 9999999999999999999999985
No 21
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.65 E-value=8.7e-16 Score=115.38 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=70.8
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHH
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~ 121 (320)
+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+.++
T Consensus 1 t~~l~V~nlp~~~-------------------------t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 55 (83)
T 3md1_A 1 TFNLFVGDLNVNV-------------------------DDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 55 (83)
T ss_dssp CEEEEEECCCTTC-------------------------CHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHH
T ss_pred CeEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHH
Confidence 3579999997522 3489999999999999999986 4688999999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
|++|+..|||..|+|++|.|.|+..+
T Consensus 56 a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 56 AQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 99999999999999999999998654
No 22
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=118.71 Aligned_cols=79 Identities=19% Similarity=0.325 Sum_probs=68.2
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHH
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHA 122 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A 122 (320)
+.+|+|.||+.... +.++.++++|+++|++||+|..|.|+ ..++.++|||||+|.+.++|
T Consensus 1 ~~~l~V~nLp~~~~-------------------~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A 60 (81)
T 2krb_A 1 DSVIVVDNVPQVGP-------------------DRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHA 60 (81)
T ss_dssp CCEEEEESCCCCCT-------------------TTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHH
T ss_pred CCEEEEeCCCCCcH-------------------HHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHH
Confidence 46899999964221 22455789999999999999999988 56788999999999999999
Q ss_pred HHHHHHhCCceeCCe-eEEE
Q 045807 123 ANALRNLNGRFYAGR-PIIV 141 (320)
Q Consensus 123 ~~A~~~lnG~~~~Gr-~I~V 141 (320)
++|++.|||..|+|+ +|.|
T Consensus 61 ~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 61 VDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHhcCcccCCceeEEe
Confidence 999999999999999 8876
No 23
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7e-16 Score=118.76 Aligned_cols=82 Identities=23% Similarity=0.343 Sum_probs=72.0
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEEC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFR 117 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~ 117 (320)
.+..+.+|+|.||... .++++|+++|++||+|..|.|+. ..++.++|||||+|.
T Consensus 12 ~~~~~~~l~V~nlp~~-------------------------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~ 66 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFS-------------------------LTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFL 66 (94)
T ss_dssp CCCCTTSEEEESCCTT-------------------------SCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEES
T ss_pred CCCCCCEEEEECCCCC-------------------------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEEC
Confidence 3456789999999742 23489999999999999999986 456889999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
+.++|++|++.|||..|.|++|.|+|+.
T Consensus 67 ~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 67 DKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp CHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 9999999999999999999999999973
No 24
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=8.2e-16 Score=119.62 Aligned_cols=85 Identities=28% Similarity=0.338 Sum_probs=74.2
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecC-CCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDN-LADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~-~tg~~~G~afV~F~~ 118 (320)
...+.+|+|.||.... ++++|+++|++||+|..|.|+.. .++.++|||||+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 59 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTS-------------------------SEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMF 59 (99)
T ss_dssp CCSCEEEEEECCCTTC-------------------------CHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESS
T ss_pred CCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECC
Confidence 3467899999997522 34899999999999999999874 488999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
.++|++|++.|||..|.|++|.|.|+.....
T Consensus 60 ~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 60 PEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp HHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred HHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence 9999999999999999999999999876543
No 25
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=6.7e-16 Score=119.10 Aligned_cols=81 Identities=26% Similarity=0.335 Sum_probs=72.1
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
+..+.+|+|.||.... ++++|+++|++||+|..|.|+.+.++.++|||||+|.+.
T Consensus 13 ~~~~~~l~v~nlp~~~-------------------------~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 67 (95)
T 2ywk_A 13 EEADRTVFVGNLEARV-------------------------REEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP 67 (95)
T ss_dssp TTGGGEEEEECCCTTC-------------------------CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESST
T ss_pred CCCCCEEEEECCCCCC-------------------------CHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCH
Confidence 3466899999997522 248999999999999999998866688999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
++|++|++.|||..|.|++|.|.|+.
T Consensus 68 ~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 68 ESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 99999999999999999999999975
No 26
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.5e-16 Score=120.50 Aligned_cols=84 Identities=24% Similarity=0.323 Sum_probs=74.6
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
.+..+.+|+|.||.... ++++|+++|++||+|..|.|+.. ++.++|||||+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~ 64 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGI-------------------------DDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSS 64 (103)
T ss_dssp CCSSCCCEEEECCCTTC-------------------------CHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECC
Confidence 44577899999997522 34899999999999999999877 88999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
.++|++|+..|||..|.|++|.|.|+..+.
T Consensus 65 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 65 PEEATKAVTEMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp HHHHHHHHHHHTTCBSSSSBCEEEECSSCC
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEEecccc
Confidence 999999999999999999999999986544
No 27
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.64 E-value=1.2e-15 Score=117.20 Aligned_cols=74 Identities=23% Similarity=0.169 Sum_probs=67.0
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
.|..|+|.||....+ +++|+++|.+||+|.+|.|+. ++|||||+|.++++
T Consensus 6 ~~~wL~VgNL~~~~t-------------------------e~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~e 55 (89)
T 2wbr_A 6 GSSWLLLKNLTAQID-------------------------GPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREE 55 (89)
T ss_dssp CCCEEEEECCCTTCC-------------------------CHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHH
T ss_pred ccceEEEeCCCccCC-------------------------HHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHH
Confidence 578899999986433 389999999999999999965 47999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeec
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
|++|++.|||..+.|++|.|.+++
T Consensus 56 A~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 56 ANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp HHHHHHHHTTEEETTEEEEEECCC
T ss_pred HHHHHHHhcCCEECCcEEEEEECC
Confidence 999999999999999999999985
No 28
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.64 E-value=6.8e-16 Score=122.00 Aligned_cols=85 Identities=19% Similarity=0.312 Sum_probs=73.6
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
.+.+|+|.||..... +.++.++++|.++|++||+|..|.|+ ..++.++|||||+|.+.++
T Consensus 14 ~~~~l~V~nLp~~~~-------------------~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~ 73 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGP-------------------DRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAH 73 (105)
T ss_dssp CCSEEEEESCCCCCT-------------------TTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSH
T ss_pred CCCEEEEeCCCcchh-------------------hhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHH
Confidence 467899999985321 12344789999999999999999998 5678999999999999999
Q ss_pred HHHHHHHhCCceeCCe-eEEEEeecC
Q 045807 122 AANALRNLNGRFYAGR-PIIVDFSPV 146 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr-~I~V~~~~~ 146 (320)
|++|+..|||..|.|+ +|.|.++..
T Consensus 74 A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 74 AVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp HHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred HHHHHHHhCCcccCCCceEEEEEcch
Confidence 9999999999999999 999999853
No 29
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.2e-16 Score=119.93 Aligned_cols=84 Identities=21% Similarity=0.380 Sum_probs=74.0
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEE-EEecC-CCCCceeEEEEEEC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESL-NICDN-LADHMVGNVYVQFR 117 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v-~i~~~-~tg~~~G~afV~F~ 117 (320)
+..+.+|+|.||.... ++++|+++|++||+|..| .|+.+ .++.++|||||+|.
T Consensus 2 ~~~~~~l~V~nLp~~~-------------------------t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~ 56 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEI-------------------------DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA 56 (96)
T ss_dssp CSCCCEEEEECCCTTC-------------------------CHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBS
T ss_pred CCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEEC
Confidence 3467899999997522 348999999999999999 88874 78899999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+.++|++|+..|||..|.|++|.|.|+....
T Consensus 57 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 57 SFDASDAAIEAMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp SHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred CHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence 9999999999999999999999999986554
No 30
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.4e-16 Score=121.33 Aligned_cols=86 Identities=21% Similarity=0.277 Sum_probs=75.1
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEEC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFR 117 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~ 117 (320)
.+..+.+|+|.||.... ++++|+++|++||+|+.|.|+. ..++.++|||||+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~-------------------------t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 62 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEV-------------------------DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFE 62 (102)
T ss_dssp SCCCCSCEEEESCCSSC-------------------------CHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCS
T ss_pred cCCCCCEEEEeCCCCCC-------------------------CHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEEC
Confidence 45577899999997522 2489999999999999999976 467889999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
+.++|++|++.|||..|.|++|.|.|+.....
T Consensus 63 ~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 63 LAEDAAAAIDNMNESELFGRTIRVNLAKPMRI 94 (102)
T ss_dssp SHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CHHHHHHHHHHhCCCEECCcEEEEEeCCCCCC
Confidence 99999999999999999999999999876543
No 31
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.5e-16 Score=121.19 Aligned_cols=85 Identities=19% Similarity=0.327 Sum_probs=74.7
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecC-CCCCceeEEEEEEC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDN-LADHMVGNVYVQFR 117 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~-~tg~~~G~afV~F~ 117 (320)
.+..+.+|+|.||.... ++++|+++|++||+|..|.|+.+ .++.++|||||+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~-------------------------t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 65 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDT-------------------------RETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFH 65 (103)
T ss_dssp CCSSSEEEEEESCCTTC-------------------------CHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEES
T ss_pred CCCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEEC
Confidence 34567899999997522 34899999999999999999874 68899999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+.++|++|+..|||..|.|+.|.|.|+....
T Consensus 66 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 66 RREDAARAIAGVSGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp SHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred CHHHHHHHHHHcCCCeeCCcEEEEEECCCCC
Confidence 9999999999999999999999999987554
No 32
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.64 E-value=2.3e-16 Score=123.24 Aligned_cols=79 Identities=22% Similarity=0.358 Sum_probs=69.1
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCC--eeEEEEec-CCCCCceeEEEEEECC
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGE--IESLNICD-NLADHMVGNVYVQFRE 118 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~--I~~v~i~~-~~tg~~~G~afV~F~~ 118 (320)
.-.||+|.||.+. +++++|+++|++||. |..|.|+. +.++.++|||||+|.+
T Consensus 8 ~m~tlfV~nL~~~-------------------------~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~ 62 (95)
T 2lkz_A 8 HMDTIILRNIAPH-------------------------TVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSS 62 (95)
T ss_dssp CCCEEEEESCCTT-------------------------CCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSS
T ss_pred ccCEEEEeCCCCc-------------------------CCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECC
Confidence 3478999999752 345899999999995 67898876 5689999999999999
Q ss_pred HHHHHHHHHHhCCc----eeCCeeEEEEeec
Q 045807 119 EEHAANALRNLNGR----FYAGRPIIVDFSP 145 (320)
Q Consensus 119 ~e~A~~A~~~lnG~----~~~Gr~I~V~~~~ 145 (320)
.++|++|++.|||. .|+|++|.|+|+.
T Consensus 63 ~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 63 AMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp SHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred HHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 99999999999997 5999999999985
No 33
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=1.3e-15 Score=119.71 Aligned_cols=84 Identities=17% Similarity=0.305 Sum_probs=74.0
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
+..+.+|+|.||.... ++++|+++|++||+|..|.|+.+.++.++|||||+|.+.
T Consensus 12 ~~~~~~l~v~nLp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 66 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQ-------------------------SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSH 66 (105)
T ss_dssp CCCCCEEEEESCCTTC-------------------------CHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCH
Confidence 3467899999997522 348999999999999999998866889999999999999
Q ss_pred HHHHHHHHHhCCceeCC---eeEEEEeecCCC
Q 045807 120 EHAANALRNLNGRFYAG---RPIIVDFSPVTD 148 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~G---r~I~V~~~~~~~ 148 (320)
++|++|++.|||..|.| ++|.|.|+....
T Consensus 67 ~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 67 TEAQAAIHALHGSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp HHHHHHHHHHSSCCCCTTCSSCCEEEESCSSC
T ss_pred HHHHHHHHHHcCCccCCCCCccEEEEECccCc
Confidence 99999999999999998 999999986544
No 34
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.64 E-value=1.6e-15 Score=121.22 Aligned_cols=85 Identities=18% Similarity=0.339 Sum_probs=74.6
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecC-CCCCceeEEEEEEC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDN-LADHMVGNVYVQFR 117 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~-~tg~~~G~afV~F~ 117 (320)
.+....+|+|.||.... ++++|+++|++||.|..|.|+.. .++.++|||||+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 65 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEI-------------------------TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF 65 (115)
T ss_dssp CSTTCEEEEEESCCTTC-------------------------CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCCCcEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEEC
Confidence 44567899999997522 34899999999999999999874 58899999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+.++|++|++.|||..|.|+.|.|.|+....
T Consensus 66 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 96 (115)
T 2dgo_A 66 NKWDAENAIQQMGGQWLGGRQIRTNWATRKP 96 (115)
T ss_dssp SHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 9999999999999999999999999986543
No 35
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=7.1e-16 Score=126.75 Aligned_cols=84 Identities=23% Similarity=0.397 Sum_probs=71.2
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
++.+|+|.||.... ++ +++.+.|.++|++||+|..|.|.. ++.++|||||+|.+.++
T Consensus 28 p~~~LfV~nL~~~~--------------~e-------~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~ 84 (127)
T 2a3j_A 28 PSQVVLITNINPEV--------------PK-------EKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQES 84 (127)
T ss_dssp CCSEEEEESCCTTS--------------CH-------HHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHH
T ss_pred CCCEEEEeCCCCCC--------------CH-------HHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHH
Confidence 46799999997532 22 344567889999999999998854 56789999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
|+.|+..|||..|.|++|.|.|+....
T Consensus 85 A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 85 AQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp HHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred HHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 999999999999999999999997654
No 36
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.3e-16 Score=120.56 Aligned_cols=86 Identities=23% Similarity=0.310 Sum_probs=74.8
Q ss_pred CCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEE
Q 045807 38 TKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQF 116 (320)
Q Consensus 38 ~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F 116 (320)
..+..+.+|+|.||... +++++|+++|++||+|..|.|+. ..++.++|||||+|
T Consensus 7 ~~~~~~~~l~v~nLp~~-------------------------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f 61 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFD-------------------------TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF 61 (102)
T ss_dssp CCCCCCSEEEEESCCTT-------------------------CCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEEC
T ss_pred CCCCCCCEEEEECCCCC-------------------------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEE
Confidence 34557789999999752 23489999999999999999986 45788999999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 117 REEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 117 ~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
.+.++|++|++.|||..|+|++|.|.|+....
T Consensus 62 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 62 ENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp SSHHHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999999999999999986543
No 37
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=118.79 Aligned_cols=85 Identities=21% Similarity=0.384 Sum_probs=74.2
Q ss_pred CCCCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeE--------EEEec-CCCC
Q 045807 36 LHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIES--------LNICD-NLAD 106 (320)
Q Consensus 36 ~h~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~--------v~i~~-~~tg 106 (320)
.+..|....+|+|.||.... ++++|+++|++||.|.. |.|+. ..++
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~-------------------------t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g 60 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENV-------------------------TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETG 60 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSC-------------------------CHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTC
T ss_pred CCCCCCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHHhCCEeeccccccccEEEEecCCCC
Confidence 34456678899999997522 34899999999999999 98886 4689
Q ss_pred CceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 107 HMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 107 ~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
.++|||||+|.+.++|++|++.|||..|.|+.|.|.|++
T Consensus 61 ~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 61 KLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp SEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred CeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 999999999999999999999999999999999999973
No 38
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=122.69 Aligned_cols=85 Identities=19% Similarity=0.317 Sum_probs=74.9
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
+..+.+|+|.||... +++++|+++|++||+|+.|.|+.+.++.++|||||+|.+.
T Consensus 4 ~~~~~~l~V~nLp~~-------------------------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~ 58 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRE-------------------------TNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENP 58 (116)
T ss_dssp TCSCCEEEEECCTTT-------------------------CCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSH
T ss_pred CCCCCEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCH
Confidence 446789999999752 2348999999999999999998866889999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
++|++|++.|||..|+|++|.|+|+.....
T Consensus 59 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 59 ADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp HHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred HHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999875443
No 39
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=120.02 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=74.3
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecC-CCCCceeEEEEEEC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDN-LADHMVGNVYVQFR 117 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~-~tg~~~G~afV~F~ 117 (320)
.+..+.+|+|.||.... ++++|+++|++||+|..|.|+.+ .++.++|||||+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 65 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKV-------------------------SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFL 65 (105)
T ss_dssp CCCTTTEEEEECCCTTC-------------------------CHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEES
T ss_pred cCCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEEC
Confidence 44567899999997522 34899999999999999999874 58899999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+.++|++|+..|||..|.|++|.|.|+....
T Consensus 66 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 66 SEEDADYAIKIMDMIKLYGKPIRVNKASAHN 96 (105)
T ss_dssp SHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred CHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 9999999999999999999999999986543
No 40
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.5e-15 Score=119.01 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=73.0
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
..+.+|+|.||.... ++++|+++|++||+|+.|.|+...++.++|||||+|.+.+
T Consensus 13 ~~~~~l~V~nlp~~~-------------------------~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~ 67 (114)
T 2do0_A 13 RLGSTVFVANLDYKV-------------------------GWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSI 67 (114)
T ss_dssp CCCSCEEEESCCTTC-------------------------CHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHH
T ss_pred CCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHH
Confidence 457899999997522 3489999999999999999988667899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|++|++.|||..|.|+.|.|.|+...
T Consensus 68 ~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 68 EAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred HHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 999999999999999999999998643
No 41
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.63 E-value=2.6e-15 Score=120.19 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=73.1
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREE 119 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~ 119 (320)
..+.+|+|.||.... ++++|+++|++||+|+.|.|+. ..++.++|||||+|.+.
T Consensus 23 ~~~~~l~V~nLp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 77 (115)
T 2cpz_A 23 PEGANLFIYHLPQEF-------------------------GDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 77 (115)
T ss_dssp STTCCEEEESCCSSC-------------------------CHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSH
T ss_pred CCCcEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCH
Confidence 356899999997522 3489999999999999999987 45889999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
++|++|++.|||..|.|++|.|.|+..+.
T Consensus 78 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 78 VSAQAAIQSMNGFQIGMKRLKVQLKRSKN 106 (115)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECCCCSC
T ss_pred HHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence 99999999999999999999999986544
No 42
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=119.09 Aligned_cols=85 Identities=18% Similarity=0.325 Sum_probs=74.2
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecC--CCCCceeEEEEEE
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDN--LADHMVGNVYVQF 116 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~--~tg~~~G~afV~F 116 (320)
....+.+|+|.||.... ++++|+++|++||+|..|.|+.. .++.++|||||+|
T Consensus 11 ~~~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f 65 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQA-------------------------NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDF 65 (107)
T ss_dssp CSSCCCCEEEESCCTTC-------------------------CHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEE
T ss_pred cCCCCCEEEEeCCCCcC-------------------------CHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEE
Confidence 34467899999997522 34899999999999999999865 4888999999999
Q ss_pred CCHHHHHHHHHHh-CCceeCCeeEEEEeecCCC
Q 045807 117 REEEHAANALRNL-NGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 117 ~~~e~A~~A~~~l-nG~~~~Gr~I~V~~~~~~~ 148 (320)
.+.++|++|+..| ||..|.|++|.|.|+....
T Consensus 66 ~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 66 ITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp SSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCC
T ss_pred CCHHHHHHHHHHhccCCeECCCEEEEEeCCCCC
Confidence 9999999999999 9999999999999997654
No 43
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.9e-16 Score=122.38 Aligned_cols=84 Identities=14% Similarity=0.259 Sum_probs=71.3
Q ss_pred CCCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEE
Q 045807 37 HTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQF 116 (320)
Q Consensus 37 h~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F 116 (320)
|-.|..+.+|+|.||... .++++|+++|++||+|+.|.|+.. +|||||+|
T Consensus 10 ~~~~~~~~~LfV~nLp~~-------------------------vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF 59 (105)
T 1sjq_A 10 HGSGVPSRVIHIRKLPID-------------------------VTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEM 59 (105)
T ss_dssp --CCCCCCEEEECSCCTT-------------------------SCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEE
T ss_pred cCCCCCCCEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEE
Confidence 456788999999999752 235899999999999999999863 69999999
Q ss_pred CCHHHHHHHHHHhC--CceeCCeeEEEEeecCCCcc
Q 045807 117 REEEHAANALRNLN--GRFYAGRPIIVDFSPVTDFR 150 (320)
Q Consensus 117 ~~~e~A~~A~~~ln--G~~~~Gr~I~V~~~~~~~~~ 150 (320)
++.++|++|++.|+ |..|.|++|.|+|+..+...
T Consensus 60 ~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 60 NTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp SSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred CCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 99999999999886 47899999999999765543
No 44
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.4e-15 Score=119.30 Aligned_cols=85 Identities=24% Similarity=0.337 Sum_probs=74.6
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEEC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFR 117 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~ 117 (320)
.+..+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 65 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDS-------------------------EEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFM 65 (111)
T ss_dssp CCCCCCCEEEESCCTTC-------------------------CHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEES
T ss_pred cCCCCCEEEEECCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEEC
Confidence 44567899999997522 3489999999999999999986 467889999999999
Q ss_pred CHHHHHHHHHHhC------CceeCCeeEEEEeecCCC
Q 045807 118 EEEHAANALRNLN------GRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 118 ~~e~A~~A~~~ln------G~~~~Gr~I~V~~~~~~~ 148 (320)
+.++|++|+..|| |..|+|++|.|.|+....
T Consensus 66 ~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 66 TQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp SHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred CHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCc
Confidence 9999999999999 999999999999986543
No 45
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8.9e-16 Score=120.40 Aligned_cols=84 Identities=21% Similarity=0.266 Sum_probs=73.7
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~ 118 (320)
+..+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~-------------------------t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 64 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRT-------------------------SPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHD 64 (103)
T ss_dssp CSCCCEEEEESCCTTC-------------------------CHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESS
T ss_pred CCCCeEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECC
Confidence 3467899999997532 3489999999999999999986 4578999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
.++|++|++.|||..|+|++|.|.|+....
T Consensus 65 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 65 RRDAQDAEAAMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp SSHHHHHHHHHSSCCBTTBCCEEEECSSCC
T ss_pred HHHHHHHHHHcCCCEECCcEEEEEECCcCC
Confidence 999999999999999999999999986543
No 46
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.7e-15 Score=116.83 Aligned_cols=86 Identities=26% Similarity=0.268 Sum_probs=73.3
Q ss_pred CCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEEC
Q 045807 38 TKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFR 117 (320)
Q Consensus 38 ~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~ 117 (320)
..+..+.+|+|.||.... ++++|+++|++||+|..|.|+.... .++|||||+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~-------------------------t~~~l~~~f~~~G~v~~v~i~~~~~-~~~g~afV~f~ 63 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRF-------------------------RDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFE 63 (103)
T ss_dssp CCSCCCCEEEEESCCTTC-------------------------CHHHHHHHGGGTSCEEEEEEECCTT-TTCCEEEEEES
T ss_pred CCCCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEEecCC-CCcEEEEEEEC
Confidence 345577899999997522 3489999999999999999987543 37899999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
+.++|++|+..|||..|+|++|.|.|+.....
T Consensus 64 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 64 NSADADRAREKLHGTVVEGRKIEVNNATARVM 95 (103)
T ss_dssp CHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEcccCCC
Confidence 99999999999999999999999999876543
No 47
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.3e-15 Score=117.14 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=72.8
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~ 118 (320)
+..+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 61 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNC-------------------------GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 61 (99)
T ss_dssp CSSCCEEEEESCCSSC-------------------------CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESS
T ss_pred CCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECC
Confidence 4467899999997522 3489999999999999999986 4678899999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
.++|++|++ |||..|+|++|.|.|+..+.
T Consensus 62 ~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 62 EQSVDQAVN-MHFHDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp HHHHHHHHH-HCCCBSSSCBCEEEECCCCC
T ss_pred HHHHHHHHH-hCCCEECCeEEEEEECCCCc
Confidence 999999999 99999999999999987543
No 48
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=118.69 Aligned_cols=94 Identities=14% Similarity=0.196 Sum_probs=76.9
Q ss_pred cCCCCCCccccCCCCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCC
Q 045807 25 GACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNL 104 (320)
Q Consensus 25 g~cr~g~~cs~~h~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~ 104 (320)
|.|..+......+..+..+.+|+|.||... .++++|+++|++||.|. +.|+.
T Consensus 1 Gs~~~~~~~~~~~~~~~~~~~l~V~nL~~~-------------------------~t~~~l~~~F~~~G~v~-~~~~~-- 52 (97)
T 2e5j_A 1 GSSGSSGPGSPPGEGAPLAADVYVGNLPRD-------------------------ARVSDLKRALRELGSVP-LRLTW-- 52 (97)
T ss_dssp CCCCCCCCCCCCCSSSCCCCEEEEECCCTT-------------------------CCHHHHHHHHHHTTCCC-SEEEE--
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEeCCCCc-------------------------CcHHHHHHHHHhcCCEE-EEEEc--
Confidence 445555555566666777899999999752 23489999999999997 66654
Q ss_pred CCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 105 ADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 105 tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+.++|||||+|.+.++|++|++.|||..|.|++|.|.|+...
T Consensus 53 -~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 53 -QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp -ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred -CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 356799999999999999999999999999999999998654
No 49
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=119.37 Aligned_cols=81 Identities=25% Similarity=0.425 Sum_probs=71.7
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
.+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+.+
T Consensus 22 ~~~~l~V~nlp~~~-------------------------t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 76 (106)
T 1p27_B 22 EGWILFVTGVHEEA-------------------------TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYK 76 (106)
T ss_dssp TBEEEEEECCCTTC-------------------------CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHH
T ss_pred CCCEEEEeCCCCCC-------------------------CHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHH
Confidence 45789999997522 3489999999999999999986 567899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|++|+..|||..|.|+.|.|.|+..+
T Consensus 77 ~a~~A~~~l~g~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 77 EAQAAMEGLNGQDLMGQPISVDWCFVR 103 (106)
T ss_dssp HHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred HHHHHHHHhcCCEECCcEEEEEeecCC
Confidence 999999999999999999999998543
No 50
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=119.29 Aligned_cols=78 Identities=23% Similarity=0.353 Sum_probs=68.0
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
.++++|+|+||... +++++|.++|++||+|+.|.|+. .+|||||+|++.+
T Consensus 19 ~ps~~l~V~NLp~~-------------------------~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~ 68 (100)
T 3r27_A 19 PASPVVHIRGLIDG-------------------------VVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVL 68 (100)
T ss_dssp CCCSEEEEESCCTT-------------------------CCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHH
T ss_pred CCCcEEEEeCCCCC-------------------------CCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHH
Confidence 47899999999752 23589999999999999999975 3699999999999
Q ss_pred HHHHHHHHhCCce--eCCeeEEEEeecCCC
Q 045807 121 HAANALRNLNGRF--YAGRPIIVDFSPVTD 148 (320)
Q Consensus 121 ~A~~A~~~lnG~~--~~Gr~I~V~~~~~~~ 148 (320)
+|.+|++.|||.. |.|++|.|+|+..+.
T Consensus 69 ~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 69 GACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp HHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred HHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 9999999999875 789999999997653
No 51
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=117.43 Aligned_cols=82 Identities=27% Similarity=0.314 Sum_probs=71.3
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CC---CCCceeEEEEEEC
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NL---ADHMVGNVYVQFR 117 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~---tg~~~G~afV~F~ 117 (320)
.+.+|+|.||... .++++|+++|++||+|..|.|+. .. ++.++|||||+|.
T Consensus 4 ~~~~l~V~nLp~~-------------------------~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~ 58 (98)
T 2cpf_A 4 GSSGLFIKNLNFS-------------------------TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYK 58 (98)
T ss_dssp CCCCEEEESCCTT-------------------------CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEES
T ss_pred CCCEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEEC
Confidence 5689999999752 23489999999999999999975 22 4588999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+.++|++|++.|||..|+|++|.|.|+....
T Consensus 59 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 59 KPEQAQKALKQLQGHTVDGHKLEVRISERAT 89 (98)
T ss_dssp SHHHHHHHHHHSTTCEETTEECEEECSSCSS
T ss_pred CHHHHHHHHHHhCCCeeCCeEEEEEEccCCC
Confidence 9999999999999999999999999986543
No 52
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.62 E-value=1e-15 Score=125.83 Aligned_cols=85 Identities=29% Similarity=0.328 Sum_probs=74.5
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEEC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFR 117 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~ 117 (320)
.|.++.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~-------------------------te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~ 96 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYT-------------------------TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFE 96 (129)
T ss_dssp CCCCSSCBCEETCTTSC-------------------------CHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEES
T ss_pred CCCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEEC
Confidence 45677899999997522 3489999999999999999986 467889999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+.++|++|++.|||..|+|++|.|.|+..+.
T Consensus 97 ~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 97 NVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp CHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 9999999999999999999999999986543
No 53
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-15 Score=120.28 Aligned_cols=82 Identities=24% Similarity=0.299 Sum_probs=72.4
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREE 119 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~ 119 (320)
..+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+.
T Consensus 24 ~~~~~l~V~nLp~~~-------------------------te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 78 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNI-------------------------TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 78 (108)
T ss_dssp SSCEEEEEECCCSSC-------------------------CHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCH
T ss_pred CCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 456789999997522 3489999999999999999986 56889999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
++|++|++.|||..|+|++|.|.|+..+
T Consensus 79 ~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 79 ECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp HHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred HHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 9999999999999999999999998643
No 54
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.7e-15 Score=117.64 Aligned_cols=74 Identities=18% Similarity=0.291 Sum_probs=66.1
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
....+|+|.||.... ++++|+++|++||+|+.|.|+.+ |||||+|.+.+
T Consensus 13 ~~~~~l~V~nLp~~~-------------------------t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~ 61 (108)
T 1x4c_A 13 RSENRVVVSGLPPSG-------------------------SWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKE 61 (108)
T ss_dssp SCCCEEEEESCCSSC-------------------------CHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHH
T ss_pred CCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHH
Confidence 356789999997522 34899999999999999999874 89999999999
Q ss_pred HHHHHHHHhCCceeCC-----eeEEEEeec
Q 045807 121 HAANALRNLNGRFYAG-----RPIIVDFSP 145 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~G-----r~I~V~~~~ 145 (320)
+|++||+.|||..|.| ++|.|.++.
T Consensus 62 ~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 62 DMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp HHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred HHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 9999999999999999 999999974
No 55
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.61 E-value=2.3e-15 Score=115.34 Aligned_cols=81 Identities=22% Similarity=0.203 Sum_probs=71.8
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
..+.+|+|.||.... ++++|+++|++||+|..|.|+. .++.++|||||+|.+.+
T Consensus 6 ~~~~~l~V~nlp~~~-------------------------t~~~l~~~f~~~G~v~~~~i~~-~~g~~~g~afV~f~~~~ 59 (92)
T 2dgv_A 6 SGACQIFVRNLPFDF-------------------------TWKMLKDKFNECGHVLYADIKM-ENGKSKGCGVVKFESPE 59 (92)
T ss_dssp SSCCEEEECSCCTTC-------------------------CHHHHHHHHHTTSCEEEEEEEE-SSSCEEEEEEEEESSHH
T ss_pred CCCcEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCEEEEEEEc-cCCCcceEEEEEECCHH
Confidence 356899999997522 3489999999999999999987 47789999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|++|++.|||..|+|++|.|.|+...
T Consensus 60 ~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 60 VAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp HHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred HHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 999999999999999999999998654
No 56
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.5e-15 Score=119.94 Aligned_cols=85 Identities=18% Similarity=0.297 Sum_probs=71.8
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHH---HHHhcCCCeeEEEEecC-C---CCCceeE
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLF---EELSKYGEIESLNICDN-L---ADHMVGN 111 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~---~~F~k~G~I~~v~i~~~-~---tg~~~G~ 111 (320)
......+|+|.||....+ +++|+ ++|++||+|..|.|+.. . ++.++||
T Consensus 11 r~~~~~~l~V~nLp~~~~-------------------------~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~ 65 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLA-------------------------DPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSAS 65 (111)
T ss_dssp CCCCSSCEEEEEECTTTC-------------------------CHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEE
T ss_pred cccCCCEEEEECCCCCCC-------------------------HHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeE
Confidence 445678999999976332 27888 99999999999999863 2 3356799
Q ss_pred EEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 112 VYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 112 afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
|||+|.+.++|++|++.|||..|+|++|.|+|+..+.
T Consensus 66 afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 66 AYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp EEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred EEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 9999999999999999999999999999999987553
No 57
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=2.1e-15 Score=119.64 Aligned_cols=82 Identities=22% Similarity=0.337 Sum_probs=72.3
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREE 119 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~ 119 (320)
..+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+.
T Consensus 24 ~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 78 (110)
T 1oo0_B 24 VEGWILFVTSIHEEA-------------------------QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETH 78 (110)
T ss_dssp TTBEEEEEESCCTTC-------------------------CHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSH
T ss_pred CCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 356789999997522 3489999999999999999986 46889999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
++|++|+..|||..|+|++|.|.|+..+
T Consensus 79 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 79 KQALAAKEALNGAEIMGQTIQVDWCFVK 106 (110)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEESEES
T ss_pred HHHHHHHHHcCCCEECCcEEEEEEcccC
Confidence 9999999999999999999999998543
No 58
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.6e-15 Score=115.80 Aligned_cols=83 Identities=22% Similarity=0.291 Sum_probs=71.3
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
...+.+|+|.||.... ++++|+++|++||+|..|.|+.... .++|||||+|.+.
T Consensus 12 ~~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~-~~~g~afV~f~~~ 65 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDV-------------------------TEVLILQLFSQIGPCKSCKMITEHT-SNDPYCFVEFYEH 65 (103)
T ss_dssp SCCCCEEEEESCCTTC-------------------------CHHHHHHHHHHHSCEEEEEEECCCC-SSCCEEEEEESSH
T ss_pred CCCCCEEEEeCCCccC-------------------------CHHHHHHHHHhcCCEeEEEEEecCC-CCCCEEEEEECCH
Confidence 3467899999997522 3489999999999999999987532 3689999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
++|++|+..|||..|.|++|.|.|+....
T Consensus 66 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 66 RDAAAALAAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred HHHHHHHHHhCCCCcCCCeEEEEECCCCc
Confidence 99999999999999999999999986543
No 59
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.3e-15 Score=117.10 Aligned_cols=83 Identities=17% Similarity=0.312 Sum_probs=73.2
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCee-EEEEec-CCCCCceeEEEEEEC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIE-SLNICD-NLADHMVGNVYVQFR 117 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~-~v~i~~-~~tg~~~G~afV~F~ 117 (320)
...+.+|+|.||.... ++++|+++|++||+|. .|.|+. ..++.++|||||+|.
T Consensus 6 ~~~~~~l~V~nLp~~~-------------------------t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~ 60 (99)
T 2div_A 6 SGMAASLWMGDLEPYM-------------------------DENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFA 60 (99)
T ss_dssp CSSSSEEEECSCCTTC-------------------------CHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECS
T ss_pred CCCccEEEEeCCCCCC-------------------------CHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeC
Confidence 3467899999997522 3489999999999999 999986 468899999999999
Q ss_pred CHHHHHHHHHHhCCceeCCee----EEEEeecCC
Q 045807 118 EEEHAANALRNLNGRFYAGRP----IIVDFSPVT 147 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~----I~V~~~~~~ 147 (320)
+.++|++|++.|||..|.|+. |.|+|+...
T Consensus 61 ~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 61 DLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp CHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred CHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 999999999999999999999 999998654
No 60
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.61 E-value=2.7e-15 Score=113.81 Aligned_cols=81 Identities=20% Similarity=0.379 Sum_probs=69.6
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCC-ceeEEEEEECCH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADH-MVGNVYVQFREE 119 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~-~~G~afV~F~~~ 119 (320)
.+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++. ++|||||+|.+.
T Consensus 3 ~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~ 57 (88)
T 4a8x_A 3 KPTKVHIGRLTRNV-------------------------TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENP 57 (88)
T ss_dssp CCCEEEEECCCTTC-------------------------CHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSH
T ss_pred CCCEEEEeCCCCCC-------------------------CHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecH
Confidence 35789999997522 3489999999999999999976 33434 789999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
++|++|+..|||..|+|+.|.|+++...
T Consensus 58 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 58 DEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred HHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 9999999999999999999999998654
No 61
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=5e-15 Score=124.90 Aligned_cols=82 Identities=26% Similarity=0.340 Sum_probs=72.8
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~ 118 (320)
+..+.+|+|.||... +++++|+++|++||+|+.|.|+. ..++.++|||||+|.+
T Consensus 36 ~~~~~~l~V~nlp~~-------------------------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 90 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFY-------------------------TTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYS 90 (156)
T ss_dssp TTTCCEEEEESCCTT-------------------------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCCCCEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECC
Confidence 346789999999742 23589999999999999999986 5578899999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
.++|++||..|||..|+|++|.|+|+..
T Consensus 91 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 91 RADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp HHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 9999999999999999999999999964
No 62
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-15 Score=120.67 Aligned_cols=79 Identities=14% Similarity=0.304 Sum_probs=67.7
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
.+.++.+|+|.||... ++++++|+++|++||+|..|.|+.. +|||||+|++
T Consensus 11 ~~~p~~~l~V~nLp~~------------------------~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~ 61 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRG------------------------KNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMAT 61 (102)
T ss_dssp CCCCCCEEEEESCCCS------------------------SSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESS
T ss_pred CCCCCCEEEEeCCCCC------------------------cCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECC
Confidence 3457899999999740 2356899999999999999999753 5899999999
Q ss_pred HHHHHHHHHHhCC--ceeCCeeEEEEeecC
Q 045807 119 EEHAANALRNLNG--RFYAGRPIIVDFSPV 146 (320)
Q Consensus 119 ~e~A~~A~~~lnG--~~~~Gr~I~V~~~~~ 146 (320)
.++|++|++.||| ..|.|++|.|+|+..
T Consensus 62 ~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 62 TEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp HHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred HHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 9999999999986 459999999999974
No 63
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=118.03 Aligned_cols=84 Identities=15% Similarity=0.204 Sum_probs=74.1
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhc-CCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSK-YGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k-~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
+..+.+|+|.||.... ++++|+++|++ ||.|..|.|+...++.++|||||+|.+
T Consensus 6 ~~~~~~l~V~nLp~~~-------------------------t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~ 60 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDV-------------------------DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTD 60 (104)
T ss_dssp SSCCCCEEEECCCTTC-------------------------CHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESC
T ss_pred CCCCcEEEEeCCCCCC-------------------------CHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECC
Confidence 4567899999997522 34899999999 999999999876589999999999999
Q ss_pred HHHHHHHHHHhCCce-eCCeeEEEEeecCCC
Q 045807 119 EEHAANALRNLNGRF-YAGRPIIVDFSPVTD 148 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~-~~Gr~I~V~~~~~~~ 148 (320)
.++|++|++.|||.. |+|++|.|.|+....
T Consensus 61 ~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 61 ELEQKRALTECQGAVGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp HHHHHHHHHHTTTCCSSSSSCCCCCBCCCCC
T ss_pred HHHHHHHHHHccCCcccCCEeEEEEEccCCC
Confidence 999999999999999 999999999986543
No 64
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.60 E-value=3.4e-15 Score=121.14 Aligned_cols=84 Identities=19% Similarity=0.297 Sum_probs=74.2
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
+..+.+|+|.||.... ++++|+++|++||+|+.|.|+...++.++|||||+|.+.
T Consensus 32 ~~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~ 86 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGV-------------------------SDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERR 86 (124)
T ss_dssp CSSCEEEEEESCCSSC-------------------------CHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCH
Confidence 4466899999997522 348999999999999999998766889999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
++|++|+..|||..|+|+.|.|+|+....
T Consensus 87 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 87 ADALKAMKQYKGVPLDGRPMDIQLVASQI 115 (124)
T ss_dssp HHHHHHHHHHTTEESSSCEEEEEEECCTT
T ss_pred HHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 99999999999999999999999997544
No 65
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.60 E-value=3.6e-15 Score=123.13 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=73.6
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREE 119 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~ 119 (320)
..+.+|+|.||... +++++|+++|++||+|+.|.|+. ..++.++|||||+|.+.
T Consensus 40 ~~~~~l~V~nLp~~-------------------------~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 94 (139)
T 1u6f_A 40 DVLRNLMVNYIPTT-------------------------VDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSG 94 (139)
T ss_dssp TTTSEEEEESCSTT-------------------------CCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSH
T ss_pred CCCCEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCH
Confidence 35678999999752 23489999999999999999976 56789999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
++|++|++.|||..|.|+.|.|.|+.....
T Consensus 95 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 95 SSAQQAIAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp HHHHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred HHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 999999999999999999999999976544
No 66
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=4.3e-15 Score=116.57 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=72.4
Q ss_pred CCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEE
Q 045807 38 TKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQF 116 (320)
Q Consensus 38 ~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F 116 (320)
..+..+.+|+|.||... +++++|+++|++|| |..|.|+. ..++.++|||||+|
T Consensus 10 ~~~~~~~~l~V~nLp~~-------------------------~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f 63 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFN-------------------------TVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEF 63 (103)
T ss_dssp CCSSSCEEEEEESCCTT-------------------------CCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEE
T ss_pred CCCCCCeEEEEeCCCCC-------------------------CCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEE
Confidence 34456789999999752 23489999999997 99999986 45789999999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 117 REEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 117 ~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
.+.++|++|+ .|||..|.|++|.|.|+....
T Consensus 64 ~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dng_A 64 DEVDSLKEAL-TYDGALLGDRSLRVDIAEGRK 94 (103)
T ss_dssp SSHHHHHHHG-GGTTCEETTEECEEEECCCCC
T ss_pred CCHHHHHHHH-hhCCCeECCeEEEEEEecCCC
Confidence 9999999999 899999999999999986543
No 67
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.60 E-value=7.4e-16 Score=118.23 Aligned_cols=67 Identities=21% Similarity=0.204 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCC--CeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 81 FYEDLFEELSKYG--EIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 81 ~eedL~~~F~k~G--~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
++++|+++|++|| .|..|.|+. ..++.++|||||+|.+.++|++|++.|||..|+|++|.|.++...
T Consensus 14 t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 14 TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp CHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred CHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 3589999999999 999999987 468999999999999999999999999999999999999998654
No 68
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.60 E-value=6.1e-15 Score=121.40 Aligned_cols=81 Identities=22% Similarity=0.309 Sum_probs=71.1
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEEC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFR 117 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~ 117 (320)
.+..+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~-------------------------~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 113 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEV-------------------------DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFE 113 (140)
T ss_dssp SCSSCCEEEEECCCTTC-------------------------CHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEES
T ss_pred CCCCCcEEEEEeCCCCC-------------------------CHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEEC
Confidence 34467899999997522 3489999999999999999986 468899999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
+.++|++|++.|||..|+|++|.|.|+
T Consensus 114 ~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 114 LAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 999999999999999999999999985
No 69
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=119.56 Aligned_cols=81 Identities=16% Similarity=0.297 Sum_probs=71.2
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
......+|+|.||... +++++|.++|++||+|..|.|+....+.++|||||+|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~-------------------------~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~ 61 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTD-------------------------ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDS 61 (103)
T ss_dssp SCSGGGCEEEECCCTT-------------------------CCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESS
T ss_pred ccCCCCEEEEECCCCC-------------------------CCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECC
Confidence 3445689999999753 235899999999999999999875558899999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
.++|++|+. |||..|+|++|.|.++.
T Consensus 62 ~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 62 IESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp HHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred HHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 999999999 99999999999999863
No 70
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.3e-15 Score=116.78 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=70.6
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
.+..+.+|+|.||... +++++|+++|++||+|+.|.|+. ++.++|||||+|.+
T Consensus 18 ~~~~~~~l~V~nLp~~-------------------------~t~~~l~~~F~~~G~v~~~~i~~--~~~~~g~afV~f~~ 70 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPD-------------------------IRTKDIEDVFYKYGAIRDIDLKN--RRGGPPFAFVEFED 70 (109)
T ss_dssp CCCCSSEEEEESCCTT-------------------------CCHHHHHHHHGGGSCEEEEEECC--SSSSSCCEEEEESC
T ss_pred CCCCCCEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCeEEEEEEE--CCCCCcEEEEEECC
Confidence 3446789999999752 23489999999999999999965 34578999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
.++|++|++.|||..|.|++|.|+|+...
T Consensus 71 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 71 PRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 99999999999999999999999998654
No 71
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=2.2e-15 Score=122.39 Aligned_cols=81 Identities=25% Similarity=0.422 Sum_probs=71.6
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
.+.+|+|.||... +++++|+++|++||+|..|.|+. ..++.++|||||+|.+.+
T Consensus 21 ~~~~l~V~nlp~~-------------------------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 75 (126)
T 3ex7_B 21 EGWILFVTGVHEE-------------------------ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYK 75 (126)
T ss_dssp SSEEEEEESCCTT-------------------------CCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHH
T ss_pred CCCEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHH
Confidence 4678999999752 23489999999999999999986 458899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|++|++.|||..|+|+.|.|+|+...
T Consensus 76 ~a~~A~~~l~g~~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 76 EAQAAMEGLNGQDLMGQPISVDWCFVR 102 (126)
T ss_dssp HHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred HHHHHHHHhCCCeeCCeEEEEEEecCC
Confidence 999999999999999999999998543
No 72
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.4e-15 Score=120.94 Aligned_cols=95 Identities=18% Similarity=0.297 Sum_probs=78.6
Q ss_pred ccCCCCCCccccCCCCCCCCCeEEecCCCCC-CCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec
Q 045807 24 IGACRHGDRCSRLHTKPSISPTLLLSNMYQR-PDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD 102 (320)
Q Consensus 24 ~g~cr~g~~cs~~h~~p~~S~tl~i~Nl~~~-~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~ 102 (320)
+|+-.+|..-.+....+.++.+|+|.||... .+ +++|+++|++||+|..|.|+.
T Consensus 6 ~~~~~~~~~~k~~~~~~~p~~~l~V~NLp~~~~t-------------------------e~~L~~lF~~fG~V~~v~i~~ 60 (112)
T 1x4f_A 6 SGKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYS-------------------------DSAVLKLAEPYGKIKNYILMR 60 (112)
T ss_dssp SCCCSCCCCCCCCCCSSCCCCEEEEESCCCSSCC-------------------------SHHHHTTTTTTSCCSEEEEET
T ss_pred CCccccCChhhhccccCCCCCEEEEeCCCCccCC-------------------------HHHHHHHHHhcCCEEEEEEec
Confidence 4555677776666666778999999999863 22 389999999999999999975
Q ss_pred CCCCCceeEEEEEECCHHHHHHHHHHhCC--ceeCCeeEEEEeecCCC
Q 045807 103 NLADHMVGNVYVQFREEEHAANALRNLNG--RFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 103 ~~tg~~~G~afV~F~~~e~A~~A~~~lnG--~~~~Gr~I~V~~~~~~~ 148 (320)
.+|||||+|++.++|++|++.||+ ..|.|++|.|+|+....
T Consensus 61 -----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 61 -----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYK 103 (112)
T ss_dssp -----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCS
T ss_pred -----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccc
Confidence 369999999999999999998864 66999999999996543
No 73
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.59 E-value=3e-15 Score=117.84 Aligned_cols=85 Identities=20% Similarity=0.253 Sum_probs=73.6
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEEC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFR 117 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~ 117 (320)
.+..+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.
T Consensus 9 ~~~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 63 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNL-------------------------DEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYC 63 (106)
T ss_dssp CCTTCEEEEEESCCTTC-------------------------CHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEES
T ss_pred CCCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEEC
Confidence 34567889999997522 3489999999999999999986 457899999999999
Q ss_pred CHHHHHHHHHHhCCcee---CCeeEEEEeecCCC
Q 045807 118 EEEHAANALRNLNGRFY---AGRPIIVDFSPVTD 148 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~---~Gr~I~V~~~~~~~ 148 (320)
+.++|++|++.|||..+ .|++|.|.|+....
T Consensus 64 ~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 64 ERESALKAQSALHEQKTLPGMNRPIQVKPADSES 97 (106)
T ss_dssp SHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCS
T ss_pred CHHHHHHHHHHhcCCcccCCCCceEEEEECCccc
Confidence 99999999999999988 89999999986543
No 74
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.3e-15 Score=118.41 Aligned_cols=84 Identities=14% Similarity=0.259 Sum_probs=73.3
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCee--------EEEEecC-CCCCcee
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIE--------SLNICDN-LADHMVG 110 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~--------~v~i~~~-~tg~~~G 110 (320)
...+.+|+|.||... +++++|+++|++||.|. .|.|+.. .++.++|
T Consensus 12 ~~~~~~l~V~nLp~~-------------------------~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g 66 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDS-------------------------VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKG 66 (113)
T ss_dssp CCCCCEEEEECCCTT-------------------------CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCS
T ss_pred CCCCCEEEEcCCCCC-------------------------CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeee
Confidence 346789999999742 23489999999999999 6888764 7889999
Q ss_pred EEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 111 NVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 111 ~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
||||+|.+.++|++|++.|||..|.|++|.|.|+....
T Consensus 67 ~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 67 DATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp EEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCC
Confidence 99999999999999999999999999999999986543
No 75
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.59 E-value=1.6e-15 Score=116.93 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=69.4
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
.+.+|+|.||... +++++|+++|++||.|..|.|+. +.++.++|||||+|.+.+
T Consensus 14 ~~~~l~V~nlp~~-------------------------~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~ 68 (95)
T 2ek1_A 14 GPTVIKVQNMPFT-------------------------VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD 68 (95)
T ss_dssp -CEEEEEECCCTT-------------------------CCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHH
T ss_pred CCCEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHH
Confidence 4578999999752 23489999999999999887765 678899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeec
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
+|++|++.|||..|.|++|.|+++.
T Consensus 69 ~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 69 EATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp HHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHHHhCCCeECCcEEEEEecc
Confidence 9999999999999999999999975
No 76
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=8.1e-15 Score=113.74 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=68.9
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
.+.++.+|+|.||.... ++++|+++|++||+|+.|.|+.. +|||||+|.+
T Consensus 13 ~~~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~ 62 (97)
T 1why_A 13 KANPTTRLWVGGLGPNT-------------------------SLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYES 62 (97)
T ss_dssp CCCCCSCEEEECCCSSC-------------------------CHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESS
T ss_pred CCCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECC
Confidence 34567899999997522 24899999999999999999753 6899999999
Q ss_pred HHHHHHHHHHhCCceeC--CeeEEEEeecCC
Q 045807 119 EEHAANALRNLNGRFYA--GRPIIVDFSPVT 147 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~--Gr~I~V~~~~~~ 147 (320)
.++|++|++.|||..|. |++|.|+|+..+
T Consensus 63 ~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 63 LDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp HHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred HHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 99999999999999999 999999998654
No 77
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.3e-15 Score=117.08 Aligned_cols=84 Identities=24% Similarity=0.373 Sum_probs=73.6
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
.+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+.+
T Consensus 7 ~~~~l~V~nlp~~~-------------------------~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 61 (104)
T 1p1t_A 7 SLRSVFVGNIPYEA-------------------------TEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 61 (104)
T ss_dssp HHSCEEEESCCTTS-------------------------CHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHH
T ss_pred CccEEEEeCCCCcC-------------------------CHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHH
Confidence 45789999997522 3489999999999999999986 468899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCCCcc
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVTDFR 150 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~ 150 (320)
+|++|++.|||..|.|+.|.|.|+....-.
T Consensus 62 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 91 (104)
T 1p1t_A 62 TALSAMRNLNGREFSGRALRVDNAASEKNK 91 (104)
T ss_dssp HHHHHHHHSSSBSCSSSCBEEEETTCTTHH
T ss_pred HHHHHHHHhCCCeeCCcEEEEEeCCCccch
Confidence 999999999999999999999998765543
No 78
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=9.8e-15 Score=111.83 Aligned_cols=82 Identities=22% Similarity=0.252 Sum_probs=72.8
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
.+....+|+|.||.... ++++|+++|++| .|..|.|+...++.++|||||+|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~-------------------------t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~ 59 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNV-------------------------TEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSN 59 (91)
T ss_dssp CCCCCCEEEEECCCSSC-------------------------CHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSS
T ss_pred CCCCccEEEEECCCCCC-------------------------CHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECC
Confidence 44567899999997522 348999999999 9999999887888999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
.++|++|+. |||..|+|+.|.|.++...
T Consensus 60 ~~~a~~A~~-~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 60 EEEVKQALK-CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp HHHHHHHHH-SCSEEETTEEEEEEEESSC
T ss_pred HHHHHHHHH-hCCceeCCcEEEEEECCcC
Confidence 999999999 9999999999999998654
No 79
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.4e-15 Score=116.19 Aligned_cols=81 Identities=21% Similarity=0.234 Sum_probs=70.6
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecC-CC-CCceeEEEEEECC
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDN-LA-DHMVGNVYVQFRE 118 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~-~t-g~~~G~afV~F~~ 118 (320)
..+.+|+|.||.... ++++|+++|++|| |..|.|+.. .+ +.++|||||+|.+
T Consensus 13 ~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~ 66 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDV-------------------------TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFED 66 (104)
T ss_dssp SSCEEEEEESCCSSC-------------------------CHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESS
T ss_pred CCCCEEEEeCCCCcC-------------------------CHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECC
Confidence 456899999997522 3489999999999 999999863 44 8899999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
.++|++|+ .|||..|.|+.|.|.|+....
T Consensus 67 ~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 95 (104)
T 1wi8_A 67 LDSLLSAL-SLNEESLGNKRIRVDVADQAQ 95 (104)
T ss_dssp HHHHHHHH-GGGTCEETTEECEEEECCCCC
T ss_pred HHHHHHHH-hcCCCEeCCcEEEEEEccCCC
Confidence 99999999 899999999999999987644
No 80
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.58 E-value=5.5e-15 Score=112.42 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=69.6
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHH
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~ 121 (320)
+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+.++
T Consensus 6 ~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 60 (89)
T 3ucg_A 6 ARSIYVGNVDYGA-------------------------TAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKES 60 (89)
T ss_dssp HTEEEEESCCTTC-------------------------CHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHH
T ss_pred CCEEEEeCCCCCC-------------------------CHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHH
Confidence 4789999997522 3489999999999999999987 4588999999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeecC
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
|++|+ .|||..|.|++|.|.++..
T Consensus 61 a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 61 VRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHHHG-GGTTCEETTEECEEEETTT
T ss_pred HHHHH-hcCCCEECCcEEEEEEccC
Confidence 99999 8999999999999999864
No 81
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.2e-15 Score=118.29 Aligned_cols=87 Identities=25% Similarity=0.250 Sum_probs=73.0
Q ss_pred cCCCCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEE
Q 045807 35 RLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYV 114 (320)
Q Consensus 35 ~~h~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV 114 (320)
........+.+|+|.||.... ++++|+++|++||+|..|.|+... +.++|||||
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~-------------------------te~~l~~~F~~~G~i~~v~i~~~~-~~~kg~afV 74 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRF-------------------------RDPDLRQMFGQFGKILDVEIIFNE-RGSKGFGFV 74 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTC-------------------------CHHHHHHHGGGTCCCSCEEECCBT-TBCTTEEEE
T ss_pred CCccCCCCCCEEEEECCCCcC-------------------------CHHHHHHHHHhcCCEEEEEEEECC-CCCceEEEE
Confidence 333445567899999997522 348999999999999999998643 347899999
Q ss_pred EECCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 115 QFREEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 115 ~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|.+.++|++|+..|||..|+|++|.|.|+..+
T Consensus 75 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 75 TFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp ECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 999999999999999999999999999998654
No 82
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.9e-15 Score=117.21 Aligned_cols=82 Identities=15% Similarity=0.215 Sum_probs=71.8
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~ 118 (320)
.....+|+|.||.... ++++|+++|++||+|+.|.|+. ..++.++|||||+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 68 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHT-------------------------TDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 68 (116)
T ss_dssp SCSSSEEEEECCCSSC-------------------------CHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESS
T ss_pred CCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECC
Confidence 3466899999997522 3489999999999999999987 4678999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
.++|++|++.||+ .|.|++|.|+|+...
T Consensus 69 ~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 69 RAAAERACKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp HHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred HHHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence 9999999999999 899999999998643
No 83
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.2e-15 Score=115.33 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=70.4
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREE 119 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~ 119 (320)
....+|+|.||... +++++|+++|++||.|..|.|+. ..++.++|||||+|.+.
T Consensus 13 ~~~~~l~v~nLp~~-------------------------~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~ 67 (98)
T 2cqp_A 13 PGPTIIKVQNMPFT-------------------------VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 67 (98)
T ss_dssp CSSEEEEEESCCTT-------------------------CCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCH
T ss_pred CCCCEEEEeCCCCC-------------------------CCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCH
Confidence 35578999999752 23489999999999998776654 67889999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
++|++|++.|||..|.|++|.|+|+..
T Consensus 68 ~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 68 DEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp HHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred HHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 999999999999999999999999853
No 84
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.58 E-value=3.6e-15 Score=119.77 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=70.4
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREE 119 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~ 119 (320)
..+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+.
T Consensus 38 ~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 92 (118)
T 2khc_A 38 PEGCNLFIYHLPQEF-------------------------TDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNP 92 (118)
T ss_dssp CCSEEEEEECSCTTC-------------------------CHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESS
T ss_pred CCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCH
Confidence 356789999997522 3489999999999999999986 46789999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEee
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
++|++|++.|||..|+|++|.|+|+
T Consensus 93 ~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 93 DSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HHHHHHHHHCCCCEETTEECCEEEC
T ss_pred HHHHHHHHHcCCCEECCEEEEEEec
Confidence 9999999999999999999999996
No 85
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.58 E-value=1.2e-14 Score=110.32 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=69.1
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~ 118 (320)
+....+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+
T Consensus 8 ~~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 62 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDT-------------------------SKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 62 (87)
T ss_dssp CSCTTEEEEECCCTTC-------------------------CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECC
Confidence 4467899999997522 3489999999999999999986 4678999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
.++|++|++ ++|..|+|+.|.|.++
T Consensus 63 ~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 63 AASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp THHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred HHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 999999996 6889999999999875
No 86
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.8e-15 Score=115.45 Aligned_cols=79 Identities=11% Similarity=0.211 Sum_probs=68.0
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
.++.+|+|.||... .++++|+++|++||.|+.|.|+.. +|||||+|++.+
T Consensus 13 ~p~~~l~V~nLp~~-------------------------~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~ 62 (101)
T 2cq1_A 13 APSRVLHIRKLPGE-------------------------VTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEE 62 (101)
T ss_dssp SCCSEEEEESCCTT-------------------------CCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHH
T ss_pred CCCCEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHH
Confidence 36789999999852 235899999999999999998763 699999999999
Q ss_pred HHHHHHHHh--CCceeCCeeEEEEeecCCCc
Q 045807 121 HAANALRNL--NGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 121 ~A~~A~~~l--nG~~~~Gr~I~V~~~~~~~~ 149 (320)
+|++|++.| ++..|.|++|.|.|+..+..
T Consensus 63 ~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 63 AAITMVNYYSAVTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp HHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred HHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence 999999987 57889999999999976554
No 87
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.58 E-value=2.1e-15 Score=121.23 Aligned_cols=72 Identities=15% Similarity=0.293 Sum_probs=60.9
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
...+|+|.||....+ +++|+++|++||+|+.|.|+.+ |||||+|++.++
T Consensus 15 ~~~~l~V~nLp~~~t-------------------------~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~ 63 (115)
T 3beg_B 15 SENRVVVSGLPPSGS-------------------------WQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKED 63 (115)
T ss_dssp --CCEEEEECCSSCC-------------------------TTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHH
T ss_pred CCcEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHH
Confidence 457899999975332 3789999999999999999764 999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEee
Q 045807 122 AANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
|++||+.|||..|+|++|.|.|.
T Consensus 64 a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 64 MTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp HHHHHHHHTTCBCCCTTSCCCBC
T ss_pred HHHHHHHhCCCEECCcEeeeEEE
Confidence 99999999999999999655543
No 88
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.57 E-value=4.1e-15 Score=115.05 Aligned_cols=85 Identities=21% Similarity=0.458 Sum_probs=69.7
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
.++.+|+|.||.... ++ +++.+.|.++|++||.|..|.|+. ++.++|||||+|.+.+
T Consensus 6 ~~~~~l~V~nLp~~~--------------~~-------~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~ 62 (97)
T 1nu4_A 6 RPNHTIYINNLNEKI--------------KK-------DELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVS 62 (97)
T ss_dssp CCCSEEEEESCCTTS--------------CH-------HHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHH
T ss_pred CCCCEEEEeCCCCCC--------------CH-------HHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHH
Confidence 367899999997522 22 223345559999999999999874 4567899999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+|++|+..|||..|.|++|.|.|+....
T Consensus 63 ~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 63 SATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred HHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 9999999999999999999999987543
No 89
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.2e-15 Score=118.78 Aligned_cols=84 Identities=13% Similarity=0.162 Sum_probs=72.4
Q ss_pred CCCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEE
Q 045807 37 HTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQF 116 (320)
Q Consensus 37 h~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F 116 (320)
...|....+|+|.||... +++++|+++|++||.| .|.|+.+.+++++|||||+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~-------------------------~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F 62 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYR-------------------------ATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEF 62 (102)
T ss_dssp SCCCSSSCEEEEESCCTT-------------------------CCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEEC
T ss_pred CCCCCCCCEEEEeCCCCC-------------------------CCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEE
Confidence 345667789999999752 3458999999999954 99998766899999999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 117 REEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 117 ~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
.+.++|++||+ ||+..|+|+.|.|.++...
T Consensus 63 ~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 63 ATHEDAVAAMA-KDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp SSSHHHHHHHT-TSSCCSSSSCCEEEEECCC
T ss_pred CCHHHHHHHHH-hCCCeECCcEEEEEECCCC
Confidence 99999999995 8999999999999998654
No 90
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.7e-15 Score=113.64 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=67.1
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
...+|+|.||.... ++ +++.+.|.++|++||+|..|.|+.+... +|||||+|.+.++
T Consensus 8 ~~~~l~V~nL~~~~--------------~~-------~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~ 64 (96)
T 2dgx_A 8 NGADVQVSNIDYRL--------------SR-------KELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQD 64 (96)
T ss_dssp SCEEEEEESCCTTS--------------CH-------HHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHH
T ss_pred CCCEEEEECCCCCC--------------CH-------HHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHH
Confidence 45689999997522 22 1222334499999999999999864433 8999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
|++|++.|||..|+|++|.|+|+...
T Consensus 65 A~~Ai~~l~g~~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 65 AIGAVNSLHRYKIGSKKILVSLATGA 90 (96)
T ss_dssp HHHHHHHHTTEEETTEEEEEEECCCS
T ss_pred HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 99999999999999999999998654
No 91
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.57 E-value=9e-15 Score=124.73 Aligned_cols=81 Identities=22% Similarity=0.345 Sum_probs=71.2
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
.+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+.+
T Consensus 71 ~~~~l~V~nLp~~~-------------------------t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 125 (165)
T 1rk8_A 71 EGWILFVTSIHEEA-------------------------QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHK 125 (165)
T ss_dssp -CEEEEEESCCTTC-------------------------CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHH
T ss_pred CCCEEEEeCCCCCC-------------------------CHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHH
Confidence 45679999997522 3489999999999999999987 468999999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|++||..|||..|.|++|.|.|+...
T Consensus 126 ~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 126 QALAAKEALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred HHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 999999999999999999999998543
No 92
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.8e-15 Score=119.96 Aligned_cols=80 Identities=14% Similarity=0.264 Sum_probs=69.3
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
.++.+|+|.||... +++++|+++|++||.|+.|.|+.. +|||||+|++.+
T Consensus 29 ~ps~~LfVgNLp~~-------------------------vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e 78 (119)
T 2ad9_A 29 VPSRVIHIRKLPID-------------------------VTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEE 78 (119)
T ss_dssp SCCSEEEEESCCTT-------------------------CCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHH
T ss_pred CCCCEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHH
Confidence 46789999999852 235899999999999999999863 699999999999
Q ss_pred HHHHHHHHhCC--ceeCCeeEEEEeecCCCcc
Q 045807 121 HAANALRNLNG--RFYAGRPIIVDFSPVTDFR 150 (320)
Q Consensus 121 ~A~~A~~~lnG--~~~~Gr~I~V~~~~~~~~~ 150 (320)
+|++|++.|++ ..|.|++|.|+|+..+...
T Consensus 79 ~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 79 AANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp HHHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred HHHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence 99999999984 6899999999999766553
No 93
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=6.9e-15 Score=116.65 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=67.5
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
.++.+|+|.||... .++++|+++|++||+|..|.|+.. +|||||+|++.+
T Consensus 13 ~p~~~l~V~nLp~~-------------------------~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~ 62 (104)
T 1wex_A 13 SVSPVVHVRGLCES-------------------------VVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENID 62 (104)
T ss_dssp CCCSEEEEESCCSS-------------------------CCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHH
T ss_pred CCCCEEEEeCCCCC-------------------------CCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHH
Confidence 36789999999752 234899999999999999998763 699999999999
Q ss_pred HHHHHHHHhCCc--eeCCeeEEEEeecCCCc
Q 045807 121 HAANALRNLNGR--FYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 121 ~A~~A~~~lnG~--~~~Gr~I~V~~~~~~~~ 149 (320)
+|++|++.|++. .|.|++|.|+|+..+..
T Consensus 63 ~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 63 SAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp HHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred HHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 999999999764 59999999999976554
No 94
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-15 Score=115.13 Aligned_cols=81 Identities=19% Similarity=0.151 Sum_probs=70.8
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~ 118 (320)
+.++.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~-------------------------t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 56 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGT-------------------------TDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDS 56 (85)
T ss_dssp CCCCCEEEEESCCTTC-------------------------CHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESC
T ss_pred CCCCcEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECC
Confidence 3567899999997522 3489999999999999999986 4678999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
.++|++|+..|||..|.|+.|+|.+..
T Consensus 57 ~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 57 PSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp HHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred HHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 999999999999999999999887753
No 95
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=5.8e-15 Score=116.10 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=72.9
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~ 118 (320)
+....+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 67 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWST-------------------------TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 67 (105)
T ss_dssp SSSSSEECCBSCCTTC-------------------------CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECC
Confidence 4467899999997522 3489999999999999999987 4688999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
.++|++|+.. ||..|+|+.|.|.++..+.
T Consensus 68 ~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 68 PNCVGTVLAS-RPHTLDGRNIDPKPCTPRG 96 (105)
T ss_dssp TTHHHHHHHH-CSEEETTEEEBCCCSCCSS
T ss_pred HHHHHHHHHh-CCCeECCEEEEEEEccCCC
Confidence 9999999998 9999999999999986554
No 96
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.9e-14 Score=114.76 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=71.3
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
....+|+|.||.... ++++|+++|++||.|..|.|+.+.++.++|||||+|.+.+
T Consensus 23 ~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~ 77 (114)
T 1x5o_A 23 QDPTNLYISNLPLSM-------------------------DEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTE 77 (114)
T ss_dssp CCTTEEEEESCCTTC-------------------------CHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHH
T ss_pred CCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHH
Confidence 456899999997522 2489999999999999999988668899999999999999
Q ss_pred HHHHHHHHhCCcee--------CCeeEEEEeecC
Q 045807 121 HAANALRNLNGRFY--------AGRPIIVDFSPV 146 (320)
Q Consensus 121 ~A~~A~~~lnG~~~--------~Gr~I~V~~~~~ 146 (320)
+|++|+..|||..| .+++|.|.|+.+
T Consensus 78 ~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 78 KCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp HHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred HHHHHHHHhCCCEEcCCccccCCCCceeEEccCC
Confidence 99999999999999 578899999864
No 97
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.9e-15 Score=117.87 Aligned_cols=79 Identities=27% Similarity=0.316 Sum_probs=69.6
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
.+.+|+|.||... +++++|+++|++||.|..|.|+. ..++.++|||||+|.+.+
T Consensus 24 ~~~~l~V~nlp~~-------------------------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 78 (114)
T 2cq4_A 24 DARTVFCMQLAAR-------------------------IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQ 78 (114)
T ss_dssp HHTEEEEESCCTT-------------------------CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGG
T ss_pred CCCEEEEeCCCCC-------------------------CCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHH
Confidence 3568999999752 23489999999999999999986 556889999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+|++|+ .|||..|.|+.|.|.|+..
T Consensus 79 ~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 79 SVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp GHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred HHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 999999 9999999999999999853
No 98
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.56 E-value=4.8e-15 Score=115.96 Aligned_cols=80 Identities=23% Similarity=0.244 Sum_probs=68.1
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecC--CCCCceeEEEEEEC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDN--LADHMVGNVYVQFR 117 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~--~tg~~~G~afV~F~ 117 (320)
+....+|+|.||....+ +++|+++|++|| |..|.|+.. .++.++|||||+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t-------------------------~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~ 69 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVT-------------------------EESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFE 69 (100)
T ss_dssp ----CEEEESCCSSCCS-------------------------SSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEEC
T ss_pred CCCCcEEEEeCCCCCCC-------------------------HHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEEC
Confidence 34678999999975332 278999999999 999999874 48899999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+.++|++|+ .|||..|+|+.|.|.++..
T Consensus 70 ~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 70 DLDSLLSAL-SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp CHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred CHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence 999999999 8999999999999999864
No 99
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=113.18 Aligned_cols=81 Identities=28% Similarity=0.286 Sum_probs=69.7
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
.+..+.+|+|.||.... ++++|+++|++||.| .|+...++.++|||||+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~-------------------------t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~ 62 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSA-------------------------TEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFAS 62 (101)
T ss_dssp CSCCCSEEEEESCCTTC-------------------------CHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECC
Confidence 44567899999997532 348999999999988 45555678899999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
.++|++|+..|||..|.|+.|.|.|+...
T Consensus 63 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 63 FEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp HHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred HHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 99999999999999999999999998654
No 100
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=122.72 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=70.8
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCC--CeeEEEEec-CCCCCceeEEEEEECCH
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYG--EIESLNICD-NLADHMVGNVYVQFREE 119 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G--~I~~v~i~~-~~tg~~~G~afV~F~~~ 119 (320)
..+|+|.||... +++++|+++|++|| .|..|.|+. ..++.++|||||+|.+.
T Consensus 55 ~~~lfVgnLp~~-------------------------~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~ 109 (156)
T 3n9u_C 55 RAAVYVGSFSWW-------------------------TTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASE 109 (156)
T ss_dssp -CEEEEECCCTT-------------------------CCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred CCEEEEeCCCCC-------------------------CCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCH
Confidence 468999999752 23589999999999 999999986 56899999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
++|++||..|||..|+|+.|.|.++..+
T Consensus 110 ~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 110 NSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp HHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred HHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 9999999999999999999999998643
No 101
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=7.1e-15 Score=127.29 Aligned_cols=83 Identities=19% Similarity=0.304 Sum_probs=73.0
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
..+.+|+|.||... +++++|+++|++||+|+.|.|+.+.++.++|||||+|.+.+
T Consensus 86 ~~~~~l~V~nLp~~-------------------------~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~ 140 (177)
T 2f3j_A 86 ETGAKLLVSNLDFG-------------------------VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRA 140 (177)
T ss_dssp TTCEEEEEECCCSC-------------------------CCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHH
T ss_pred CCCCEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHH
Confidence 34678999998642 23489999999999999999987668899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+|++|++.|||..|+|++|.|+|+....
T Consensus 141 ~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 141 DALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp HHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred HHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 9999999999999999999999997544
No 102
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=113.95 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=73.5
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeE-EEEecCCCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIES-LNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~-v~i~~~~tg~~~G~afV~F~~ 118 (320)
+....+|+|.||... +++++|+++|++||.|.. |.|+...++.++|||||+|.+
T Consensus 12 ~~~~~~l~V~nLp~~-------------------------~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~ 66 (104)
T 1wg5_A 12 TANDGFVRLRGLPFG-------------------------CSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFAS 66 (104)
T ss_dssp CSCCCEEEEESCCTT-------------------------CCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESS
T ss_pred CCCCCEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECC
Confidence 346689999999752 335899999999999998 888777889999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
.++|++|+.. ||..|+|+.|.|.++....+
T Consensus 67 ~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~ 96 (104)
T 1wg5_A 67 QEIAEKALKK-HKERIGHRYIEIFKSSRAEV 96 (104)
T ss_dssp HHHHHHHHTT-TTCCSSSSCCEEEEECTTTS
T ss_pred HHHHHHHHHh-CcchhCCcEEEEEECCHHHH
Confidence 9999999997 99999999999999876554
No 103
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=110.61 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=67.7
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
+..+.+|+|.||.... ++++|+++|++||+|..|.|+ +|||||+|.+.
T Consensus 5 ~~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~ 52 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREA-------------------------TEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDK 52 (90)
T ss_dssp SSCCEEEEEESCCSSC-------------------------CHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSH
T ss_pred CCCCeEEEEeCCCCCC-------------------------CHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCH
Confidence 4567899999997522 248999999999999999997 48999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
++|++|+..|||..|.|++|.|.|+....
T Consensus 53 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 53 TAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp HHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred HHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 99999999999999999999999986544
No 104
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.1e-15 Score=117.46 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=73.3
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCe-eEEEEecCCCCCceeEEEEEEC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEI-ESLNICDNLADHMVGNVYVQFR 117 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I-~~v~i~~~~tg~~~G~afV~F~ 117 (320)
.+....+|+|.||... +++++|+++|++||.| ..|.|+...++.++|||||+|.
T Consensus 11 ~~~~~~~l~V~nLp~~-------------------------~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~ 65 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFS-------------------------ITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFK 65 (114)
T ss_dssp CCSCCCEEEEESCCTT-------------------------SCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECS
T ss_pred CCCCccEEEEeCcCCc-------------------------CCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEEC
Confidence 4567789999999752 2358999999999999 8999987668999999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+.++|++||+. ||..|.|+.|.|.++....
T Consensus 66 ~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 66 NEDDARKSERL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp SHHHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred CHHHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence 99999999996 9999999999999986443
No 105
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.55 E-value=5e-15 Score=122.58 Aligned_cols=83 Identities=19% Similarity=0.334 Sum_probs=73.4
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREE 119 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~ 119 (320)
..+.+|+|.||.. .+++++|+++|++||+|+.|.|+. ..++.++|||||+|.+.
T Consensus 45 ~~~~~l~V~nLp~-------------------------~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~ 99 (135)
T 2lea_A 45 EGMTSLKVDNLTY-------------------------RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 99 (135)
T ss_dssp GGCCCEEEECCCS-------------------------SCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCH
T ss_pred CCCCEEEEeCCCC-------------------------CCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCH
Confidence 3567899999974 235689999999999999999986 45789999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
++|++|++.|||..|.|++|.|.|+....
T Consensus 100 ~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 100 RDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp HHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999986543
No 106
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.55 E-value=1.7e-14 Score=114.81 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=68.9
Q ss_pred CCCCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEE
Q 045807 36 LHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYV 114 (320)
Q Consensus 36 ~h~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV 114 (320)
....+..+.+|+|.||... .++++|+++|++||+|..|.|+. ..++.++|||||
T Consensus 18 ~~~~~~~~~~lfV~nLp~~-------------------------~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV 72 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQ-------------------------TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFV 72 (109)
T ss_dssp --------CCEEEESCCTT-------------------------CCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEE
T ss_pred ccccCCCCCEEEEeCCCCC-------------------------CCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEE
Confidence 3345557789999999752 23489999999999999999987 457899999999
Q ss_pred EECCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 115 QFREEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 115 ~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|.+.++|++|+..| |..|+|+.|.|.++...
T Consensus 73 ~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 73 TFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPR 104 (109)
T ss_dssp EESSHHHHHHHHHSS-CEEETTEEEEEEECCCC
T ss_pred EECCHHHHHHHHHHC-CCcCCCEEEEEEEccCC
Confidence 999999999999976 59999999999998654
No 107
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.55 E-value=4.4e-14 Score=118.16 Aligned_cols=82 Identities=17% Similarity=0.265 Sum_probs=72.3
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEEC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFR 117 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~ 117 (320)
.+..+.+|+|.||.... ++++|+++|++||.|..|.|+. ..++.++|+|||+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~-------------------------t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~ 137 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNV-------------------------DDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFT 137 (166)
T ss_dssp CCTTCEEEEEESCCTTC-------------------------CHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCCCceEEECCCCCCC-------------------------CHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeC
Confidence 34466789999997522 2489999999999999999986 468899999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
+.++|.+|+..|||..|+|++|.|.|+.
T Consensus 138 ~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 138 SQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp CHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 9999999999999999999999999985
No 108
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.54 E-value=1.8e-14 Score=121.32 Aligned_cols=84 Identities=20% Similarity=0.347 Sum_probs=73.9
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecC-CCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDN-LADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~-~tg~~~G~afV~F~~ 118 (320)
+....+|+|.||... .++++|+++|++||+|..|.|+.+ .++.++|||||+|.+
T Consensus 67 ~~~~~~l~v~nl~~~-------------------------~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~ 121 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYR-------------------------TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 121 (158)
T ss_dssp CCBCCEEEEESCCTT-------------------------CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESB
T ss_pred CCCCCEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECC
Confidence 345689999999752 234899999999999999999874 589999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
.++|++|++.|||..|.|++|.|.|+....
T Consensus 122 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 122 KRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 999999999999999999999999997543
No 109
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=116.17 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=67.9
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHH
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHA 122 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A 122 (320)
..+|+|.||... +++++|+++|++||+|..|.|+. .+|||||+|.+.++|
T Consensus 10 ~~~l~V~nLp~~-------------------------~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A 59 (111)
T 1whx_A 10 KTVILAKNLPAG-------------------------TLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEA 59 (111)
T ss_dssp EEEEEEESCCTT-------------------------CCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHH
T ss_pred CCEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHH
Confidence 468999999752 23589999999999999999874 468999999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 123 ANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 123 ~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
++|++.|||..|.|++|.|+|+....+
T Consensus 60 ~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 60 RKAFRHLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp HHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred HHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 999999999999999999999976555
No 110
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.54 E-value=1.9e-14 Score=115.00 Aligned_cols=80 Identities=23% Similarity=0.424 Sum_probs=69.7
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
|..+.+|+|.||.... ++++|+++|++||.|..|.|+.. +.++|||||+|.+.
T Consensus 5 ~~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~ 57 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKI-------------------------TAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDI 57 (115)
T ss_dssp TTCCSEEEEESCCTTC-------------------------CHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSH
T ss_pred CCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCH
Confidence 4567899999997422 34899999999999999999853 34589999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
++|++|+..|||..|+|+.|.|.|+..
T Consensus 58 ~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 58 FDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp HHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred HHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 999999999999999999999999863
No 111
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.54 E-value=3.2e-14 Score=110.84 Aligned_cols=77 Identities=23% Similarity=0.379 Sum_probs=66.6
Q ss_pred CCCCCCCeEEecCCCC-CCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEE
Q 045807 38 TKPSISPTLLLSNMYQ-RPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQF 116 (320)
Q Consensus 38 ~~p~~S~tl~i~Nl~~-~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F 116 (320)
..+..+.+|+|.||.. .. ++++|+++|++||.|..|.|. +|||||+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~-------------------------t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f 64 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNV-------------------------SKEDLFRIFSPYGHIMQINIK-------NAFGFIQF 64 (97)
T ss_dssp --CCTTCEEEEESCCSSCC-------------------------CHHHHHHHHGGGSCEEEEEEC-------SSEEEEEE
T ss_pred CCCCCCCEEEEeCCCcccC-------------------------CHHHHHHHHHhcCCEEEEEEe-------CCEEEEEE
Confidence 3445788999999974 32 248999999999999999984 59999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 117 REEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 117 ~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
.+.++|++|+..|||..|+|++|.|+|+..
T Consensus 65 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 65 DNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp SSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 999999999999999999999999999864
No 112
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=112.51 Aligned_cols=76 Identities=21% Similarity=0.283 Sum_probs=64.5
Q ss_pred CCCe-EEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcC-CCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 42 ISPT-LLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKY-GEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 42 ~S~t-l~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~-G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
++.| |+|.||... +++ +++..+|+++|++| |+|..| ++ |+|||+|.+.
T Consensus 7 p~~T~lYV~NL~~~--------------~~~-------~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~ 56 (96)
T 2diu_A 7 GCHTLLYVYNLPAN--------------KDG-------KSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQ 56 (96)
T ss_dssp CSSEEEEEESCCTT--------------SCH-------HHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSH
T ss_pred CcceEEEEeCCCCc--------------CCH-------HHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCH
Confidence 4677 779999863 333 34558899999999 599988 23 9999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
++|+.|++.|||..|.|++|+|+|++..
T Consensus 57 esA~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 57 DSAERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp HHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred HHHHHHHHHhcCCccCCceEEEEecCCC
Confidence 9999999999999999999999999654
No 113
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=108.10 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=66.8
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
.+..+.+|+|.||.... ++++|+++|++||+|..|.|+. .+|||||+|.+
T Consensus 8 ~~~~~~~l~V~~l~~~~-------------------------t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~ 57 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTI-------------------------TETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFAT 57 (85)
T ss_dssp SCSSCCCEEEECCTTTS-------------------------CHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESS
T ss_pred CCCCccEEEEcCCCCCC-------------------------CHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECC
Confidence 34466899999997522 2489999999999999999986 36999999999
Q ss_pred HHHHHHHHHHh-CCceeCCeeEEEEee
Q 045807 119 EEHAANALRNL-NGRFYAGRPIIVDFS 144 (320)
Q Consensus 119 ~e~A~~A~~~l-nG~~~~Gr~I~V~~~ 144 (320)
.++|++|+..| ||..|+|++|.|+|+
T Consensus 58 ~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 58 RQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp HHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred HHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 99999999999 999999999999997
No 114
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.54 E-value=6.2e-15 Score=108.79 Aligned_cols=62 Identities=11% Similarity=0.185 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 82 YEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
+++|+++|++||+|..|.|+. ..++.++|||||+|.+.++|++|++ |||..|+|++|.|.++
T Consensus 13 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 13 VEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 489999999999999999987 4578999999999999999999998 9999999999999875
No 115
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.2e-14 Score=109.29 Aligned_cols=77 Identities=21% Similarity=0.345 Sum_probs=67.4
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
+..+.+|+|.||.... ++++|+++|++||+|..|.|+. +||||+|.+.
T Consensus 7 ~~~~~~l~V~nLp~~~-------------------------t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~ 54 (92)
T 2dgt_A 7 GKASTKLHVGNISPTC-------------------------TNQELRAKFEEYGPVIECDIVK-------DYAFVHMERA 54 (92)
T ss_dssp CCSSEEEEEESCCSSC-------------------------CHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCH
T ss_pred CCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCH
Confidence 4567899999997522 3489999999999999999974 5999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
++|++|+..|||..|.|+.|.|.|+....
T Consensus 55 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 55 EDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred HHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 99999999999999999999999996543
No 116
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.54 E-value=1.6e-14 Score=116.74 Aligned_cols=82 Identities=18% Similarity=0.098 Sum_probs=72.1
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCC---eeEEEEecCCCCCceeEEEEEE
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGE---IESLNICDNLADHMVGNVYVQF 116 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~---I~~v~i~~~~tg~~~G~afV~F 116 (320)
+....+|+|.||... +++++|+++|++||. |..|.|+....++++|||||+|
T Consensus 14 ~~~~~~l~V~nLp~~-------------------------~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F 68 (118)
T 2db1_A 14 GGEGYVVKLRGLPWS-------------------------CSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVEL 68 (118)
T ss_dssp BCCCCEEEEESCCTT-------------------------CCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEB
T ss_pred CCCCcEEEEeCCCCC-------------------------CCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEE
Confidence 446688999999752 345899999999999 8999998765689999999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 117 REEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 117 ~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
.+.++|++|++ |||..|+|+.|.|.++..+
T Consensus 69 ~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 69 ESEDDVKLALK-KDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp SSHHHHHHHGG-GTTEEETTEEEEEEEECHH
T ss_pred CCHHHHHHHHh-cCCCeECCeEEEEEECCHH
Confidence 99999999999 9999999999999998543
No 117
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.54 E-value=2.3e-14 Score=116.01 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=69.6
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHH
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~ 121 (320)
+.+|+|.||... +++++|+++|++||+|..|.|+. ..++.++|||||+|.+.++
T Consensus 36 ~~~l~V~nlp~~-------------------------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 90 (124)
T 2jwn_A 36 KRSVYVGNVDYG-------------------------STAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNS 90 (124)
T ss_dssp HTEEEEEEECTT-------------------------CCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHH
T ss_pred CCEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHH
Confidence 578999999742 23589999999999999999986 4688999999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeecC
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
|++|+ .|||..|+|+.|.|.|+..
T Consensus 91 a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 91 VDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHHHH-TTTTCEETTEECEEEESSC
T ss_pred HHHHH-hcCCCeECCeEEEEEECCC
Confidence 99999 7999999999999999864
No 118
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=111.85 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=69.4
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
.+..+.+|+|.||.... ++++|+++|++||+|..|.|+.. +|||||+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~ 60 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDI-------------------------TEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLET 60 (99)
T ss_dssp CCCCTTEEEEESCCTTC-------------------------CHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSS
T ss_pred cCCCCCEEEEeCCCCCC-------------------------CHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECC
Confidence 34567899999997522 24899999999999999999753 6999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
.++|++|++.|||..|.|++|.|.|+....
T Consensus 61 ~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 61 RTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp SHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred HHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 999999999999999999999999986543
No 119
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.54 E-value=3.9e-14 Score=111.16 Aligned_cols=77 Identities=22% Similarity=0.363 Sum_probs=67.2
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
...+.+|+|.||.... ++++|+++|++||+|..|.|+ +|||||+|.+.
T Consensus 8 ~~~~~~l~V~nl~~~~-------------------------t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~ 55 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTV-------------------------TEEILEKAFSQFGKLERVKKL-------KDYAFIHFDER 55 (103)
T ss_dssp CCCCCCEEEECCCTTC-------------------------CHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSH
T ss_pred CCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCH
Confidence 3456899999997532 348999999999999999986 37999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
++|++|++.|||..|.|++|.|.|+....
T Consensus 56 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 56 DGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred HHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 99999999999999999999999986543
No 120
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.8e-14 Score=113.10 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=68.5
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
+....+|+|.||.... ++++|+++|++||+|..|.|+.. +|||||+|.+.
T Consensus 22 ~~~~~~l~V~nl~~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~ 71 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGL-------------------------TDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTH 71 (109)
T ss_dssp CSSCCEEEEECCSSCC-------------------------CHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSH
T ss_pred CCCCcEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCH
Confidence 3456899999997522 24899999999999999999864 69999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
++|++|+..|||..|.|++|.|.|+...
T Consensus 72 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 72 ESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred HHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 9999999999999999999999998654
No 121
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.53 E-value=8.4e-15 Score=121.71 Aligned_cols=84 Identities=18% Similarity=0.080 Sum_probs=72.9
Q ss_pred CCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCC---eeEEEEecCCCCCceeEEEE
Q 045807 38 TKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGE---IESLNICDNLADHMVGNVYV 114 (320)
Q Consensus 38 ~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~---I~~v~i~~~~tg~~~G~afV 114 (320)
..+....+|+|.||.. ++++++|+++|++||. |..|.|+....+.++|||||
T Consensus 39 ~~~~~~~~lfVgnLp~-------------------------~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV 93 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPW-------------------------SCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFV 93 (136)
T ss_dssp SSCCTTCEEEEESCCT-------------------------TCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEE
T ss_pred CCCCCCCEEEEeCCCC-------------------------CCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEE
Confidence 3445678899999975 2345899999999999 89999987555899999999
Q ss_pred EECCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 115 QFREEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 115 ~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|.+.++|++|++ |||..|+|+.|.|.++...
T Consensus 94 ~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 94 ELGSEDDVKMALK-KDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp ECSSHHHHHHHHT-TTEEESSSSEEEEEECCHH
T ss_pred EECCHHHHHHHHh-cCCCEECCEEEEEEECChH
Confidence 9999999999999 9999999999999998543
No 122
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=114.08 Aligned_cols=82 Identities=21% Similarity=0.215 Sum_probs=70.8
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCC-eeEEEEe-c-CCCCCceeEEEEEECC
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGE-IESLNIC-D-NLADHMVGNVYVQFRE 118 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~-I~~v~i~-~-~~tg~~~G~afV~F~~ 118 (320)
...+|+|.||... .++++|+++|++||. |..|.|+ . ..++.++|||||+|.+
T Consensus 7 ~~~~l~V~nLp~~-------------------------~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~ 61 (109)
T 2dis_A 7 GNCRLFIGGIPKM-------------------------KKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYES 61 (109)
T ss_dssp CSEEEEEECCCTT-------------------------SCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESS
T ss_pred CCCEEEEeCCCCc-------------------------CCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecC
Confidence 5678999999752 234899999999999 9999997 3 4577899999999999
Q ss_pred HHHHHHHHHHhC--CceeCCeeEEEEeecCCC
Q 045807 119 EEHAANALRNLN--GRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 119 ~e~A~~A~~~ln--G~~~~Gr~I~V~~~~~~~ 148 (320)
.++|++|++.|| +..|.|++|.|.|+....
T Consensus 62 ~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 62 HRAAAMARRKLMPGRIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp HHHHHHHHTTTTTCCSCBTTBCCEEEESCSSC
T ss_pred HHHHHHHHHHhhCCCceecCCeEEEEEcCCCC
Confidence 999999999996 589999999999986543
No 123
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.9e-14 Score=109.91 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=69.5
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREE 119 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~ 119 (320)
..+.+|+|.||.... ++++|+++|++||+|+.|.|+. ..++.++|||||+|.+.
T Consensus 13 ~~~~~l~v~nlp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 67 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKT-------------------------TEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY 67 (103)
T ss_dssp CCCCCEEEESCCSSC-------------------------CHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSH
T ss_pred CCCCEEEEEcCCCcC-------------------------CHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCH
Confidence 456889999987522 3489999999999999999987 46799999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
++|++|+. ++..|+|+.|.|.|+..+
T Consensus 68 ~~a~~A~~--~~~~~~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 68 ETQVKVMS--QRHMIDGRWCDCKLPNSK 93 (103)
T ss_dssp HHHHHHHH--SCEEETTEEEEEECCCTT
T ss_pred HHHHHHHH--cCCeeCCeEEEEEecCCC
Confidence 99999999 478999999999998654
No 124
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.5e-14 Score=108.60 Aligned_cols=77 Identities=18% Similarity=0.289 Sum_probs=67.6
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
.+..+.+|+|.||.... ++++|+++|++||+|..|.|+. |||||+|.+
T Consensus 5 ~~~~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~ 52 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAAC-------------------------TSQELRSLFERRGRVIECDVVK-------DYAFVHMEK 52 (90)
T ss_dssp SSCCSCCEEEESCCTTC-------------------------CHHHHHHHHHHHSCEEEEEECS-------SCEEEEESC
T ss_pred CCCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECC
Confidence 34567899999997522 3489999999999999999974 699999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
.++|++|+..|||..|+|++|.|.|+...
T Consensus 53 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 53 EADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred HHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 99999999999999999999999998654
No 125
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.7e-14 Score=112.58 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=67.3
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
+..+.+|+|.||.... ++++|+++|++||.|..|.|+. ++|||||+|.+.
T Consensus 24 ~~~~~~l~V~nlp~~~-------------------------~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~ 73 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFA-------------------------TEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTH 73 (101)
T ss_dssp CSSCCEEEEESCCTTC-------------------------CHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSH
T ss_pred CCCCCEEEEcCCCccc-------------------------CHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCH
Confidence 3456899999997522 3489999999999999999973 469999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
++|++|+..|||..|+|+.|.|.|+..
T Consensus 74 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 74 EQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp HHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred HHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 999999999999999999999999854
No 126
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=118.31 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=71.9
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEE-EEecCCCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESL-NICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v-~i~~~~tg~~~G~afV~F~~ 118 (320)
+....+|+|.||... +++++|+++|++||.|..+ .|....++.++|||||+|.+
T Consensus 22 ~~~~~~l~V~nLp~~-------------------------~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~ 76 (124)
T 1wel_A 22 HEAGFCVYLKGLPFE-------------------------AENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRN 76 (124)
T ss_dssp CCCCCEEEEECCCTT-------------------------CCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSS
T ss_pred CCCCcEEEEeCCCCC-------------------------CCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECC
Confidence 445689999999752 2358999999999999884 45557789999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
.++|++||. |||..|+|+.|.|.++..+.+
T Consensus 77 ~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~ 106 (124)
T 1wel_A 77 EADYKAALC-RHKQYMGNRFIQVHPITKKGM 106 (124)
T ss_dssp SHHHHHHHT-SCSBCSTTSCBEEEEECHHHH
T ss_pred HHHHHHHHH-hCCCeECCcEEEEEECCHHHH
Confidence 999999999 999999999999999976544
No 127
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=107.74 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 83 EDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
++|+++|++||+|..|.|+. ..++.++|||||+|.+.++|++|+..|+ ..|+|++|.|.++
T Consensus 15 ~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 15 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 88999999999999999987 4578999999999999999999999999 9999999999986
No 128
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.53 E-value=3e-14 Score=113.34 Aligned_cols=76 Identities=24% Similarity=0.409 Sum_probs=67.3
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
+..+.+|+|.||.... ++++|+++|++||+|..|.|+ +|||||+|.+.
T Consensus 28 ~~~~~~l~V~nLp~~~-------------------------t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~ 75 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDV-------------------------QESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEA 75 (108)
T ss_dssp CCSCSEEEECSSCTTC-------------------------CHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSH
T ss_pred CCCCCEEEEECCCCCC-------------------------CHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCH
Confidence 4467899999996522 348999999999999999997 59999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
++|++|+..|||..|+|+.|.|.|+...
T Consensus 76 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 76 ESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp HHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 9999999999999999999999998654
No 129
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.53 E-value=8e-15 Score=120.35 Aligned_cols=81 Identities=20% Similarity=0.345 Sum_probs=71.1
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeE--EEEec-CCCCCceeEEEEEEC
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIES--LNICD-NLADHMVGNVYVQFR 117 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~--v~i~~-~~tg~~~G~afV~F~ 117 (320)
..+.+|+|.||....+ +++|+++|++||.|.. |.|+. ..++.++|||||+|.
T Consensus 21 ~~~~~lfV~nL~~~~t-------------------------e~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~ 75 (131)
T 2m2b_A 21 NANDTIILRNLNPHST-------------------------MDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLS 75 (131)
T ss_dssp CCCCEEEECSCCTTCC-------------------------SHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECC
T ss_pred CCCCEEEEeCCCCCCC-------------------------HHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEEC
Confidence 3567999999975332 3899999999999976 99887 458999999999999
Q ss_pred CHHHHHHHHHHhCCc----eeCCeeEEEEeecCC
Q 045807 118 EEEHAANALRNLNGR----FYAGRPIIVDFSPVT 147 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~----~~~Gr~I~V~~~~~~ 147 (320)
+. +|.+|+..|||. .|+|+.|.|.|+...
T Consensus 76 ~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 76 TI-EAAQLLQILQALHPPLTIDGKTINVEFAKGS 108 (131)
T ss_dssp HH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCS
T ss_pred CH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCC
Confidence 99 999999999999 999999999998654
No 130
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.53 E-value=2.1e-14 Score=115.26 Aligned_cols=79 Identities=20% Similarity=0.227 Sum_probs=68.0
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCC-CeeEEEEecCCCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYG-EIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G-~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
|....+|+|.||.... ++++|+++|++|| +|..|.|+.. .++|||||+|.+
T Consensus 25 p~~~~~l~VgnLp~~~-------------------------te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~ 76 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGC-------------------------SWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPS 76 (111)
T ss_dssp CCCCEEEEEECSSCCC-------------------------CHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESS
T ss_pred CCCCCEEEEECCCCCC-------------------------CHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECC
Confidence 4455689999997532 3589999999999 9999998642 468999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
.++|++|++.|||..|+|++|.|+++..
T Consensus 77 ~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 77 EEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp HHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 9999999999999999999999999853
No 131
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=6.3e-14 Score=108.76 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=67.6
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
.+..+.+|+|.|+ . .++++|+++|++||+|..|.|. .++|||||+|.+
T Consensus 11 ~~~~~~~l~V~n~-~--------------------------~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~ 58 (97)
T 1x5p_A 11 APRKGNTLYVYGE-D--------------------------MTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEK 58 (97)
T ss_dssp CCCCCSEEEEECS-S--------------------------CCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESS
T ss_pred CCCCCCEEEEcCC-C--------------------------CCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECC
Confidence 4456789999994 1 1248999999999999999995 347999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
.++|++|+..|||..|.|++|.|.|+.....
T Consensus 59 ~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 59 MESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp HHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred HHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 9999999999999999999999999865543
No 132
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=115.05 Aligned_cols=83 Identities=22% Similarity=0.349 Sum_probs=69.5
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCee----EEEEecCCCCCceeEEEE
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIE----SLNICDNLADHMVGNVYV 114 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~----~v~i~~~~tg~~~G~afV 114 (320)
.+..+.+|+|.||... +++++|+++|++||.|. .+.+. ++.++|||||
T Consensus 21 ~~~~~~~l~V~nLp~~-------------------------~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV 72 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPR-------------------------VTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFI 72 (115)
T ss_dssp CCSCCSEEEEECCCTT-------------------------CCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEE
T ss_pred CCCCCCEEEEeCCCCC-------------------------CCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEE
Confidence 3446789999999752 23489999999999994 44444 6788999999
Q ss_pred EECCHHHHHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 115 QFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 115 ~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
+|.+.++|++|+..|||..|.|++|.|.|+....-
T Consensus 73 ~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 73 TFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp ECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred EECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCC
Confidence 99999999999999999999999999999976543
No 133
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.52 E-value=2.9e-15 Score=114.45 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 82 YEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
+++|+++|++||+|..|.|+. ..++.++|||||+|.+.+ |++|+..|||..|+|++|.|.++.....
T Consensus 15 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 15 SEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp HHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred HHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 488999999999999999986 457899999999999999 9999999999999999999999876543
No 134
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=8.3e-15 Score=117.19 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=70.4
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
...+|+|.||... +++++|+++|++| .|..|.|+....+.++|||||+|.+.++
T Consensus 15 ~~~~v~V~nLp~~-------------------------~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~ 68 (109)
T 2dnn_A 15 DDLYVSVHGMPFS-------------------------AMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQD 68 (109)
T ss_dssp HHHEEEEECCCSS-------------------------CCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHH
T ss_pred CCCEEEEeCCCCC-------------------------CCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHH
Confidence 4568999999853 3458999999999 8999999876668999999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
|++|+ .|||..|+|+.|.|..+....|
T Consensus 69 a~~Al-~~~~~~~~gr~i~V~~a~~~~~ 95 (109)
T 2dnn_A 69 TFEAL-KRNRMLMIQRYVEVSPATERQW 95 (109)
T ss_dssp HHHHH-HTTTEEETTEEEEEEECCHHHH
T ss_pred HHHHH-hcCCCeECCeEEEEEECCccch
Confidence 99999 5999999999999988865444
No 135
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.8e-14 Score=114.28 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=70.6
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
...+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+.+
T Consensus 26 ~~~~l~V~nLp~~~-------------------------te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 80 (116)
T 1x4b_A 26 QFRKLFIGGLSFET-------------------------TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 80 (116)
T ss_dssp HHTEEEEECCTTCC-------------------------CHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHH
T ss_pred CCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHH
Confidence 45789999997522 3489999999999999999987 467899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|++|+.. +|..|+|+.|.|.|+..+
T Consensus 81 ~a~~Ai~~-~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 81 EVDAAMAA-RPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp HHHHHHTS-CSEEETTEEEEEECCSSC
T ss_pred HHHHHHHh-CCcEECCEEEEEEECCCC
Confidence 99999997 999999999999998654
No 136
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.5e-14 Score=115.33 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCcee-----CCeeEEEEeecCCCcc
Q 045807 81 FYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFY-----AGRPIIVDFSPVTDFR 150 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~-----~Gr~I~V~~~~~~~~~ 150 (320)
++++|+++|++||+|..|.|+. .+|||||+|.+.++|++|++.|||..| .|++|.|.|+....|.
T Consensus 40 te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 40 SRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWS 109 (114)
T ss_dssp CHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCCS
T ss_pred CHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCccc
Confidence 3589999999999999998864 269999999999999999999999998 7999999999766654
No 137
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.51 E-value=4.1e-14 Score=112.36 Aligned_cols=76 Identities=26% Similarity=0.423 Sum_probs=66.0
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
..+.+|+|.||.... +++++|+++|++||+|..|.| ++|||||+|.+.+
T Consensus 25 ~~~~~l~V~nl~~~~------------------------~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~ 73 (110)
T 1wf1_A 25 SINSRVFIGNLNTAL------------------------VKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNER 73 (110)
T ss_dssp TCSSEEEECSCCCSS------------------------CCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSH
T ss_pred CCCcEEEEeCCCccc------------------------CCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHH
Confidence 355799999997530 124899999999999999999 3699999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|++|++.|||..|+|++|.|+|+...
T Consensus 74 ~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 74 HARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp HHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred HHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 999999999999999999999998643
No 138
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.1e-13 Score=107.70 Aligned_cols=76 Identities=26% Similarity=0.411 Sum_probs=66.4
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcC--CCeeEEEEecCCCCCceeEEEEEECC
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKY--GEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~--G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
..+.+|+|.||.... ++++|+++|++| |.|..|.++ +|||||+|.+
T Consensus 13 ~~~~~l~V~nLp~~~-------------------------t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~ 60 (99)
T 2cpd_A 13 SSVKILYVRNLMLST-------------------------SEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSN 60 (99)
T ss_dssp SCCCEEEEESCCTTC-------------------------CHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESS
T ss_pred CCcCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCC
Confidence 467899999997532 348999999999 999999875 4899999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
.++|++|+..|||..|.|++|.|.|+....
T Consensus 61 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 61 REDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp HHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 999999999999999999999999986543
No 139
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.51 E-value=8.2e-14 Score=117.68 Aligned_cols=81 Identities=14% Similarity=0.271 Sum_probs=72.0
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecC-CCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDN-LADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~-~tg~~~G~afV~F~~ 118 (320)
+..+.+|+|.||.... ++++|+++|++||+|..|.|+.. .++.++|||||+|.+
T Consensus 91 ~~~~~~l~v~nlp~~~-------------------------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYL-------------------------NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp CTTTTCEEEECCCTTC-------------------------CHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred CCCCCEEEEEcCCCcC-------------------------CHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 3457899999997522 24899999999999999999875 589999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
.++|++|+..|||..|+|++|.|.|+.
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999999999999973
No 140
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=2.3e-14 Score=110.70 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=67.2
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
..+.+|+|.||.... ++++|+++|++||.|..| ..++.++|||||+|.+.+
T Consensus 14 ~~~~~l~V~nL~~~~-------------------------t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~ 64 (96)
T 1fjc_A 14 RAARTLLAKNLSFNI-------------------------TEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEA 64 (96)
T ss_dssp TGGGEEEEESCCSSC-------------------------CHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHH
T ss_pred CCCCEEEEeCCCCCC-------------------------CHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHH
Confidence 356899999997522 348999999999998766 345778999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|++|+..|||..|.|++|.|.|+...
T Consensus 65 ~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 65 DAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp HHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred HHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 999999999999999999999998654
No 141
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.50 E-value=2.3e-14 Score=127.55 Aligned_cols=72 Identities=24% Similarity=0.531 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecC-----CCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCCcc
Q 045807 79 EDFYEDLFEELSKYGEIESLNICDN-----LADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFR 150 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I~~v~i~~~-----~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~ 150 (320)
++++++|.++|++||+|..|.|+.+ .+++++|++||+|.+.++|++|++.|||++|+||+|.|.|+++..|.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~ 216 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFD 216 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhh
Confidence 4567899999999999999999852 34589999999999999999999999999999999999999877664
No 142
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-14 Score=113.65 Aligned_cols=85 Identities=13% Similarity=0.072 Sum_probs=73.2
Q ss_pred CCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCC---eeEEEEecCCCCCceeEEEE
Q 045807 38 TKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGE---IESLNICDNLADHMVGNVYV 114 (320)
Q Consensus 38 ~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~---I~~v~i~~~~tg~~~G~afV 114 (320)
..+....+|+|.||....+ +++|+++|++||. |..|.|+....+.++|||||
T Consensus 6 ~~~~~~~~l~V~nLp~~~t-------------------------e~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV 60 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCT-------------------------MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALI 60 (107)
T ss_dssp CCCSSCCEEEEECCCSSCC-------------------------SHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEE
T ss_pred CCCCCccEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEE
Confidence 4455678899999986332 3899999999998 89999987555899999999
Q ss_pred EECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 115 QFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 115 ~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+|.+.++|++|+. |||..|+|+.|.|.++....
T Consensus 61 ~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 61 EMESEQDVQKALE-KHRMYMGQRYVEVYEINNED 93 (107)
T ss_dssp EBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHHH
T ss_pred EECCHHHHHHHHH-hCcceeCCeEEEEEECCHHH
Confidence 9999999999999 99999999999999986433
No 143
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.50 E-value=8.7e-14 Score=116.46 Aligned_cols=80 Identities=24% Similarity=0.395 Sum_probs=69.8
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
.+....+|+|.||....+ +++|+++|++||.|..|.|+.. ++|||||+|.+
T Consensus 69 ~~~~~~~l~V~nl~~~~t-------------------------~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~ 119 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGN-------------------------KTELERAFGYYGPLRSVWVARN----PPGFAFVEFED 119 (150)
T ss_dssp SSTTSCEEEEESCCSCCS-------------------------CHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECC
Confidence 344678999999975332 3889999999999999999764 47999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
.++|++|+..|||..|.|++|.|.|+..+
T Consensus 120 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 120 PRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999999999998654
No 144
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.50 E-value=3e-14 Score=128.25 Aligned_cols=66 Identities=20% Similarity=0.198 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCC--CeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 81 FYEDLFEELSKYG--EIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 81 ~eedL~~~F~k~G--~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
++++|+++|++|| +|+.|.|+. ..++.++|||||+|.+.++|++||+.|||..|.|++|.|.|+..
T Consensus 81 te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 81 TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp CHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred CHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 3589999999999 999999987 46899999999999999999999999999999999999999864
No 145
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=4.9e-15 Score=115.70 Aligned_cols=83 Identities=20% Similarity=0.202 Sum_probs=69.3
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
+..+.+|+|.||... +++++|+++|++||.|..+.|....++.++|||||+|.+.
T Consensus 14 ~~~~~~l~V~nLp~~-------------------------~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~ 68 (101)
T 1fj7_A 14 STTPFNLFIGNLNPN-------------------------KSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESA 68 (101)
T ss_dssp CSCSEEEEEECCCTT-------------------------SCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSH
T ss_pred CCCCCEEEEeCCCCC-------------------------CCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCH
Confidence 345679999999752 2348999999999999883333455678899999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
++|++|++ |||..|.|+.|.|.|+....
T Consensus 69 ~~a~~A~~-l~g~~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 69 EDLEKALE-LTGLKVFGNEIKLEKPKGRD 96 (101)
T ss_dssp HHHHHHHH-GGGCCBTTBCCEEECCSCCC
T ss_pred HHHHHHHh-cCCcEECCcEEEEEEcCCCC
Confidence 99999999 99999999999999986543
No 146
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=2.6e-14 Score=111.55 Aligned_cols=63 Identities=27% Similarity=0.469 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+++|+++|++||+|..|.|+.. ++|||||+|.+.++|++|++.|||..|.|+.|.|.|+....
T Consensus 14 ~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 14 KGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp HHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred HHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 4899999999999999999875 57999999999999999999999999999999999986543
No 147
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=4.3e-14 Score=109.60 Aligned_cols=76 Identities=24% Similarity=0.363 Sum_probs=66.3
Q ss_pred CCCCeEEecCCCC-CCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 41 SISPTLLLSNMYQ-RPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 41 ~~S~tl~i~Nl~~-~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
.++.+|+|.||.. .. ++++|+++|++||+|..|.|. +|||||+|.+.
T Consensus 8 ~~~~~l~V~nlp~~~~-------------------------t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~ 55 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNV-------------------------SKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNP 55 (96)
T ss_dssp -CCEEEEEESSTTSCC-------------------------CHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCH
T ss_pred CCCCEEEEeCCCcccC-------------------------CHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCH
Confidence 3568999999974 22 248999999999999999994 58999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
++|++|+..|||..|.|++|.|+|+....
T Consensus 56 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 56 QSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp HHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred HHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 99999999999999999999999986543
No 148
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.49 E-value=1.6e-13 Score=114.74 Aligned_cols=82 Identities=21% Similarity=0.348 Sum_probs=72.5
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecC-CCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDN-LADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~-~tg~~~G~afV~F~~~e 120 (320)
++.+|+|.||.... ++++|+++|++||+|..|.|+.. .++.++|||||+|.+.+
T Consensus 1 s~~~l~v~nlp~~~-------------------------~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~ 55 (167)
T 1fxl_A 1 SKTNLIVNYLPQNM-------------------------TQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 55 (167)
T ss_dssp CCSEEEEESCCTTC-------------------------CHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CcceEEEcCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHH
Confidence 35789999997532 24899999999999999999874 48899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+|++|++.|||..|.|++|.|.|+....
T Consensus 56 ~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 83 (167)
T 1fxl_A 56 DAEKAINTLNGLRLQTKTIKVSYARPSS 83 (167)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred HHHHHHHHcCCCccCCceEEEEecCCCc
Confidence 9999999999999999999999987544
No 149
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.49 E-value=1.1e-13 Score=114.08 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeE-EEEEECCHHHHHHHHHHhCCceeCC--eeEEEEeecCCC
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGN-VYVQFREEEHAANALRNLNGRFYAG--RPIIVDFSPVTD 148 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~-afV~F~~~e~A~~A~~~lnG~~~~G--r~I~V~~~~~~~ 148 (320)
+++|+++|++||+|..|.|+.. .+|| |||+|.+.++|++|++.|||..|.| +.|+|+|+....
T Consensus 42 e~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 42 LDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp HHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred HHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 4899999999999999998763 2577 9999999999999999999999988 999999997654
No 150
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.49 E-value=5.9e-14 Score=114.07 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCCcc
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFR 150 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~ 150 (320)
+++|+++|++||+|..|.|+ .++|||||+|.+.++|++|+..|||..|.|++|.|.|+......
T Consensus 51 e~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 51 PTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp HHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred HHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 48999999999999999996 35799999999999999999999999999999999999765443
No 151
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.3e-14 Score=118.62 Aligned_cols=82 Identities=20% Similarity=0.175 Sum_probs=71.1
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCe----eEEEEecCCCCCceeEEEEEEC
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEI----ESLNICDNLADHMVGNVYVQFR 117 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I----~~v~i~~~~tg~~~G~afV~F~ 117 (320)
...+|+|.||.. ++++++|+++|++||+| ..|.|+.+.+++++|||||+|.
T Consensus 22 ~~~~v~V~nLp~-------------------------~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~ 76 (123)
T 2dha_A 22 NQVIVRMRGLPF-------------------------TATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFA 76 (123)
T ss_dssp SCCEEEECSCCT-------------------------TCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCS
T ss_pred CCCEEEEeCCCC-------------------------CCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEEC
Confidence 457899999975 33469999999999986 6899987778999999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
+.++|++||+. |+..|.|+.|.|..+....+
T Consensus 77 ~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~e~ 107 (123)
T 2dha_A 77 CEEYAQNALRK-HKDLLGKRYIELFRSTAAEV 107 (123)
T ss_dssp SHHHHHHHHTT-TTEESSSCEECCEEECHHHH
T ss_pred CHHHHHHHHHh-CCCeeCCeEEEEEECCHHHH
Confidence 99999999995 99999999999998865444
No 152
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.49 E-value=8.2e-15 Score=122.25 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=70.8
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
.+....+|+|.||.. ++++++|+++|++|| |+.|.|+.+.+++++|||||+|++
T Consensus 42 ~~~~~~~lfV~nLp~-------------------------~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~ 95 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPY-------------------------KATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFAT 95 (139)
T ss_dssp ---CCCCEECCSCCT-------------------------TCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSH
T ss_pred CCCCCCEEEEeCCCC-------------------------CCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCC
Confidence 445668999999975 234589999999999 779999876668999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
.++|++|| .||+..|+|+.|.|.++.....
T Consensus 96 ~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 96 HEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp HHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred HHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 99999999 7999999999999999876543
No 153
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.8e-14 Score=107.89 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=65.9
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCC-eeEEEEecCCCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGE-IESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~-I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
+..+.+|+|.||.... ++++|+++|++||. |..+.|. ++|||||+|.+
T Consensus 5 ~~~~~~l~V~nLp~~~-------------------------t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~ 53 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAV-------------------------TADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPD 53 (93)
T ss_dssp CCCCCCEEEECCCTTC-------------------------CHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSC
T ss_pred CCCCcEEEEeCCCCCC-------------------------CHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECC
Confidence 3466899999997522 34899999999999 6666663 36999999999
Q ss_pred HHHHHHHHHHhCC-ceeCCeeEEEEeecCCC
Q 045807 119 EEHAANALRNLNG-RFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 119 ~e~A~~A~~~lnG-~~~~Gr~I~V~~~~~~~ 148 (320)
.++|++|++.||| ..|+|++|.|.|+....
T Consensus 54 ~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 54 QNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp HHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred HHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 9999999999999 99999999999986543
No 154
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=107.60 Aligned_cols=82 Identities=20% Similarity=0.226 Sum_probs=68.1
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEEC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFR 117 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~ 117 (320)
.+..+.+|+|.||.... ++++|+++|++|+ .|.|+. ..++.++|||||+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~-------------------------t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~ 62 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDT-------------------------TEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFN 62 (102)
T ss_dssp SSCCCSSEEEECCCTTC-------------------------CHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECS
T ss_pred CCCCCCEEEEeCCCCcc-------------------------CHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEEC
Confidence 34567899999997522 3488999999885 455554 467889999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+.++|++|++.|||..|.|+.|.|.|+..+.
T Consensus 63 ~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 63 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 93 (102)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CHHHHHHHHHHhCCCeECCeEEEEEEecCCC
Confidence 9999999999999999999999999986543
No 155
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.48 E-value=2.6e-13 Score=114.56 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=70.0
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
+..+.+|+|.||.... ++++|+++|++||.|..|.|+...++.++|||||+|.+.
T Consensus 92 ~~~~~~l~v~nl~~~~-------------------------t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~ 146 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKC-------------------------TENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTR 146 (175)
T ss_dssp CGGGSEEEEESCCTTC-------------------------CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred cCCCCeEEEcCCCCcC-------------------------CHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCH
Confidence 3466899999997522 248999999999999999998877789999999999999
Q ss_pred HHHHHHHHHhCCceeC---CeeEEEEee
Q 045807 120 EHAANALRNLNGRFYA---GRPIIVDFS 144 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~---Gr~I~V~~~ 144 (320)
++|.+|++.|||..+. |++|.|.|+
T Consensus 147 ~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 147 AMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 9999999999998775 499999997
No 156
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.48 E-value=4.9e-14 Score=117.05 Aligned_cols=84 Identities=23% Similarity=0.336 Sum_probs=69.5
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEE------EEecCCCCCceeEEE
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESL------NICDNLADHMVGNVY 113 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v------~i~~~~tg~~~G~af 113 (320)
..++.+|+|.||... +++++|+++|++||.|..| .|....++.++||||
T Consensus 42 ~~~~~~l~V~nLp~~-------------------------~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~af 96 (143)
T 3egn_A 42 GEPNCRIYVKNLAKH-------------------------VQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAF 96 (143)
T ss_dssp CSCCSEEEEEEECTT-------------------------CCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEE
T ss_pred CCCCCEEEEeCCCCC-------------------------CCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEE
Confidence 346789999999752 2348999999999999874 122234678899999
Q ss_pred EEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 114 VQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 114 V~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
|+|.+.++|++|+..|||..|.|++|.|.|+....
T Consensus 97 V~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 97 IGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 131 (143)
T ss_dssp EECSSHHHHHHHHHHHTTBEETTEECEEEECCCSC
T ss_pred EEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 99999999999999999999999999999996543
No 157
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.48 E-value=1.5e-13 Score=115.53 Aligned_cols=82 Identities=18% Similarity=0.275 Sum_probs=72.7
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
++.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+.+
T Consensus 2 ~~~~l~v~nlp~~~-------------------------~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 56 (168)
T 1b7f_A 2 SNTNLIVNYLPQDM-------------------------TDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEM 56 (168)
T ss_dssp CCSEEEEECCCTTC-------------------------CHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHH
T ss_pred CccEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHH
Confidence 56899999997532 2489999999999999999986 568889999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+|++|++.|+|..|.|++|.|.|+....
T Consensus 57 ~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 84 (168)
T 1b7f_A 57 DSQRAIKVLNGITVRNKRLKVSYARPGG 84 (168)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCCS
T ss_pred HHHHHHHhcCCCEeCCcEEEEEecCCCc
Confidence 9999999999999999999999987544
No 158
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.47 E-value=2.6e-13 Score=113.93 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=70.4
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecC-CCCCceeEEEEEECC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDN-LADHMVGNVYVQFRE 118 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~-~tg~~~G~afV~F~~ 118 (320)
+..+.+|+|.||.... ++++|+++|++||.|..|.|+.. .++.++|+|||+|.+
T Consensus 86 ~~~~~~l~v~nl~~~~-------------------------t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 140 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTI-------------------------TDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNK 140 (168)
T ss_dssp TTTTCEEEEESCCTTC-------------------------CHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cCCCCCEEEeCCCCCC-------------------------CHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECC
Confidence 3456899999997522 24899999999999999999874 488899999999999
Q ss_pred HHHHHHHHHHhCCceeCC--eeEEEEee
Q 045807 119 EEHAANALRNLNGRFYAG--RPIIVDFS 144 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~G--r~I~V~~~ 144 (320)
.++|.+|+..|||..|.| ++|.|.|+
T Consensus 141 ~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 141 REEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999999988 99999985
No 159
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.47 E-value=1.2e-13 Score=105.40 Aligned_cols=77 Identities=19% Similarity=0.356 Sum_probs=67.3
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
.+.+|+|.||.... ++++|+++|++| .|..|.|. .++|||||+|.+.++
T Consensus 4 ~~~~l~V~nLp~~~-------------------------t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~ 52 (88)
T 1wg1_A 4 GSSGILVKNLPQDS-------------------------NCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQ 52 (88)
T ss_dssp CCCCEEEESCCSSC-------------------------CHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHH
T ss_pred CCCEEEEeCCCCCC-------------------------CHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHH
Confidence 46789999997522 348999999999 99999985 468999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
|++|++.|||..|.|++|.|+|++...+
T Consensus 53 a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 80 (88)
T 1wg1_A 53 AQNAIQMFHQYSFRGKDLIVQLQPTDAL 80 (88)
T ss_dssp HHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred HHHHHHHhCCCeECCcEEEEEEcCCCce
Confidence 9999999999999999999999976543
No 160
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.47 E-value=1.1e-13 Score=118.33 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC--eeEEEEeecCCC
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAG--RPIIVDFSPVTD 148 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~G--r~I~V~~~~~~~ 148 (320)
+++|+++|++||+|+.|.|+... ++|||||+|.+.++|++|++.|||..|.| ++|+|+|+..+.
T Consensus 60 ed~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 60 LDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp HHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred HHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 48999999999999999997532 46999999999999999999999999965 999999997653
No 161
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.47 E-value=2.8e-14 Score=105.12 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 82 YEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
+++|+++|++||+|..|.|+. ..++.++|||||+|.+.++|++|++ ++|..|.|++|.|.++
T Consensus 13 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 13 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred HHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 489999999999999999976 4678899999999999999999999 5999999999999875
No 162
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=4.4e-15 Score=119.10 Aligned_cols=83 Identities=20% Similarity=0.370 Sum_probs=72.1
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeE--------EEEec-CCCCCceeE
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIES--------LNICD-NLADHMVGN 111 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~--------v~i~~-~~tg~~~G~ 111 (320)
..+.+|+|.||.. +.++++|+++|++||.|.. |.|+. ..++.++||
T Consensus 5 ~~~~~l~V~nLp~-------------------------~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~ 59 (116)
T 2lcw_A 5 SDNNTIFVQGLGE-------------------------NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGE 59 (116)
Confidence 3567899999974 2345899999999999998 87876 467889999
Q ss_pred EEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 112 VYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 112 afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
|||+|.+.++|++|+..|||..|.|++|.|.|+..+.
T Consensus 60 afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 60 ATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRA 96 (116)
Confidence 9999999999999999999999999999999986543
No 163
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.46 E-value=2.1e-13 Score=119.30 Aligned_cols=82 Identities=12% Similarity=0.200 Sum_probs=72.6
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
.+.+|+|.||.... ++++|+++|++||.|+.|.|+. ..++.++|||||+|.+.+
T Consensus 124 ~~~~l~v~nlp~~~-------------------------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 124 AFNRIYVASVHQDL-------------------------SDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp TSCEEEEECCCTTC-------------------------CHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCcEEEEeCCCCcC-------------------------CHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 45799999997522 3489999999999999999987 468899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+|.+|+..|||..|+|+.|.|.|+....
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred HHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 9999999999999999999999986543
No 164
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=3.1e-13 Score=110.54 Aligned_cols=62 Identities=19% Similarity=0.260 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeE-EEEEECCHHHHHHHHHHhCCceeCC--eeEEEEeecCCC
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGN-VYVQFREEEHAANALRNLNGRFYAG--RPIIVDFSPVTD 148 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~-afV~F~~~e~A~~A~~~lnG~~~~G--r~I~V~~~~~~~ 148 (320)
+++|+++|++||.|+.|.|+.. .|| |||+|.+.++|+.|++.|||..|.| ++|.|+|+....
T Consensus 39 ~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 39 VDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp HHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred HHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 4899999999999999999763 286 9999999999999999999999987 699999997654
No 165
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.46 E-value=2.6e-13 Score=117.18 Aligned_cols=82 Identities=15% Similarity=0.298 Sum_probs=72.8
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecC-CCCCceeEEEEEECCH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDN-LADHMVGNVYVQFREE 119 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~-~tg~~~G~afV~F~~~ 119 (320)
..+.+|+|.||.... ++++|+++|++||.|..|.|+.. .++.++|||||+|.+.
T Consensus 112 ~~~~~l~v~nl~~~~-------------------------~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~ 166 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYL-------------------------NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDI 166 (198)
T ss_dssp CCCCEEEEECCCTTC-------------------------CHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSS
T ss_pred CCCCEEEEeCCCCCC-------------------------CHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCH
Confidence 567899999997522 24899999999999999999874 5889999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
++|++|+..|||..|+|++|.|.|+...
T Consensus 167 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 167 NVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp SHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred HHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9999999999999999999999998654
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.46 E-value=3.2e-13 Score=119.31 Aligned_cols=81 Identities=23% Similarity=0.403 Sum_probs=71.7
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
++.||+|.||... +++++|+++|++||+|+.|.|+. ..++.++|||||+|.+.+
T Consensus 14 p~~tlfVgnLp~~-------------------------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~ 68 (213)
T 4f02_A 14 PMASLYVGDLHPD-------------------------VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 68 (213)
T ss_dssp -CCEEEEESCCTT-------------------------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCcEEEEeCCCCC-------------------------CCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHH
Confidence 5678999999752 23589999999999999999986 568999999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|++|++.|||..+.|+.|.|.++...
T Consensus 69 ~A~~Ai~~~~~~~~~g~~i~~~~~~~~ 95 (213)
T 4f02_A 69 DAERALDTMNFDVIKGKPVRIMWSQRD 95 (213)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHHhhhhhcCCccccccccccc
Confidence 999999999999999999999998643
No 167
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.6e-13 Score=104.71 Aligned_cols=78 Identities=24% Similarity=0.283 Sum_probs=65.9
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEE-EEecCCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESL-NICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v-~i~~~~tg~~~G~afV~F~~~e 120 (320)
.+.+|+|.||.... ++++|+++|++||+|..| .|+... ..|.|||+|.+.+
T Consensus 14 ~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~v~~~~~i~~~~---~~~~afV~f~~~~ 65 (96)
T 2e44_A 14 RIRKLQIRNIPPHL-------------------------QWEVLDSLLVQYGVVESCEQVNTDS---ETAVVNVTYSSKD 65 (96)
T ss_dssp SCCCEEEEEECSSS-------------------------CHHHHHHHHHHHSCEEEEEEECCSS---SSEEEEEEESSHH
T ss_pred CCCEEEEEcCCCCC-------------------------CHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEECCHH
Confidence 46889999997522 348999999999999999 466532 1355999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|++|+..|||..|.|++|.|.|+.++
T Consensus 66 ~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 66 QARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred HHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 999999999999999999999999765
No 168
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.45 E-value=3.9e-13 Score=112.45 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=68.7
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREE 119 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~ 119 (320)
....+|+|.||.... ++++|+++|++||.|..|.|+. ..++.++|||||+|.+.
T Consensus 86 ~~~~~l~v~nl~~~~-------------------------t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 86 IRDANLYVSGLPKTM-------------------------TQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp GTTCEEEEESCCTTC-------------------------CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCCcEEECCCCCcC-------------------------CHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 356789999997522 2489999999999999999986 45888999999999999
Q ss_pred HHHHHHHHHhCCceeCCee--EEEEee
Q 045807 120 EHAANALRNLNGRFYAGRP--IIVDFS 144 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~--I~V~~~ 144 (320)
++|.+|++.|||..|.|+. |.|.||
T Consensus 141 ~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 141 IEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999999965 888885
No 169
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.6e-13 Score=104.60 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=65.9
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
..+.+|+|.||... +++++|+++|++||+|..| +....++. ||||+|.+.+
T Consensus 6 ~~~~~l~V~nl~~~-------------------------~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~ 56 (94)
T 2e5g_A 6 SGLRSVFVSGFPRG-------------------------VDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVG 56 (94)
T ss_dssp TTCCEEEEECCCTT-------------------------CCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHH
T ss_pred CCCCEEEEECCCCC-------------------------CCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHH
Confidence 35679999999752 2358999999999999998 55544544 9999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCCCc
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVTDF 149 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~ 149 (320)
+|++|+. |||..|+|+.|.|.++.....
T Consensus 57 ~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 57 AREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp HHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred HHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 9999999 999999999999998865443
No 170
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.44 E-value=3.4e-13 Score=112.71 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=69.5
Q ss_pred CeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHH
Q 045807 44 PTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAA 123 (320)
Q Consensus 44 ~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~ 123 (320)
++|+|.||.... ++++|+++|++||+|..|.|+...++.++|||||+|.+.++|+
T Consensus 1 R~l~V~nlp~~~-------------------------t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~ 55 (166)
T 3md3_A 1 RVLYVGNLDKAI-------------------------TEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDAN 55 (166)
T ss_dssp CEEEEEEEETTC-------------------------CHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHH
T ss_pred CEEEECCCCCcC-------------------------CHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHH
Confidence 489999997522 3489999999999999999988666789999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEeecCC
Q 045807 124 NALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 124 ~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|+..|||..|.|+.|.|.++...
T Consensus 56 ~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 56 IALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp HHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHcCCCccCCCeeEEEEcCCC
Confidence 999999999999999999998543
No 171
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.43 E-value=1.3e-13 Score=107.78 Aligned_cols=79 Identities=11% Similarity=0.219 Sum_probs=69.6
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
.+.+|+|.||.... ++++|+++|++||.|..|.|+...++.++|||||+|.+.++
T Consensus 8 ~~~~l~V~nLp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 62 (102)
T 2xs2_A 8 MPNTVFVGGIDVRM-------------------------DETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVD 62 (102)
T ss_dssp EEEEEEEECCCTTC-------------------------CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCC
T ss_pred CCCEEEEeCCCCCC-------------------------CHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHH
Confidence 45789999997522 34899999999999999999875589999999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
|++|+. +|..|+|+.|.|.++..+
T Consensus 63 a~~Ai~--~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 63 VQKIVE--SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp HHHHTT--CCCEETTEECEEEEEEEC
T ss_pred HHHHHh--CCCeECCEEEEEEECCcC
Confidence 999999 999999999999998543
No 172
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.43 E-value=4.1e-13 Score=118.63 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=69.2
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
...+|+|.||.... ++++|+++|++||.|+.|.|+... +.++|||||+|.+.++
T Consensus 102 ~~~~l~v~nl~~~~-------------------------t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 102 GVGNIFIKNLDKSI-------------------------DNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEA 155 (213)
T ss_dssp CTTEEEEESCCTTC-------------------------CHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHH
T ss_pred ccccceECCccccc-------------------------HHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHH
Confidence 45689999997522 348999999999999999998643 3479999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 122 AANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 122 A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
|++|++.|||..|+|++|.|.|+..+
T Consensus 156 a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 156 AERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCH
T ss_pred HHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 99999999999999999999998643
No 173
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.43 E-value=4e-13 Score=118.76 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=67.4
Q ss_pred CCCeEEecCCC-CCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMY-QRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~-~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
.+.||+|.||. ... ++++|+++|++||.|..|.|+.. .+|||||+|.+.+
T Consensus 3 ~~~~l~V~nL~~~~~-------------------------~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~ 53 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKM-------------------------NCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGY 53 (205)
T ss_dssp CCSEEEEECCCTTTC-------------------------CHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHH
T ss_pred CCCEEEEeCCCcccC-------------------------CHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHH
Confidence 56899999997 321 24799999999999999999763 3699999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|++|++.|||..|.|++|.|.|+...
T Consensus 54 ~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 54 AVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred HHHHHHHHhCCCEECCceEEEEEccCC
Confidence 999999999999999999999998643
No 174
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.42 E-value=7.1e-13 Score=121.43 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=76.2
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
..+.+|+|.||.... +++++|.++|++||.|..|.|+...++.++|+|||+|.+.+
T Consensus 182 ~~~~~l~v~nlp~~~------------------------~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 237 (284)
T 3smz_A 182 LHSRCLCVDRLPPGF------------------------NDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAE 237 (284)
T ss_dssp TSCSEEEEECCCTTC------------------------CCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHH
T ss_pred CCccEEEEecCCccc------------------------CCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHH
Confidence 467899999997531 12489999999999999999988778899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCCCcch
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVTDFRE 151 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~~~~~ 151 (320)
+|.+|+..|||..|+|++|.|.|+.......
T Consensus 238 ~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 238 MAEEAQQQADGLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCSSSCHH
T ss_pred HHHHHHHHhCCCccCCeEEEEEEecCCCccc
Confidence 9999999999999999999999997766543
No 175
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.42 E-value=1.2e-13 Score=113.23 Aligned_cols=82 Identities=21% Similarity=0.160 Sum_probs=69.6
Q ss_pred CCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCee--EEEEecCCCCCceeEEEEE
Q 045807 38 TKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIE--SLNICDNLADHMVGNVYVQ 115 (320)
Q Consensus 38 ~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~--~v~i~~~~tg~~~G~afV~ 115 (320)
..+....+|+|.||... +++++|+++|++| .|+ .|.|+....+.++|||||+
T Consensus 37 ~~~~~~~~lfVgnLp~~-------------------------~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~ 90 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFG-------------------------CTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQ 90 (126)
T ss_dssp TCSSSCCEEEEECCCTT-------------------------CCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEE
T ss_pred CCCCCCCEEEEeCCCCC-------------------------CCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEE
Confidence 34456789999999852 3458999999999 576 8998875558999999999
Q ss_pred ECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 116 FREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 116 F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
|.++++|++||+ +++..|+|+.|.|..+..
T Consensus 91 F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 91 FASQELAEKALG-KHKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp ESSTTHHHHHHT-TTTCCBTTBCCCCEEECH
T ss_pred ECCHHHHHHHHH-HCCCEECCEEEEEEECCH
Confidence 999999999999 588999999999988753
No 176
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.41 E-value=2.3e-13 Score=114.29 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=70.0
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
.+.+|+|.||.... ++++|+++|++||.|..|.|+. ..++.++|||||+|.+.+
T Consensus 86 ~~~~l~V~nlp~~~-------------------------t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 140 (167)
T 2cjk_A 86 KTGKIFVGGIGPDV-------------------------RPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 140 (167)
T ss_dssp HCEEEEEEEECTTC-------------------------CHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHH
T ss_pred CCCeEEECCCCCCC-------------------------CHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHH
Confidence 35689999987522 3489999999999999999986 468899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|++|++ |+|..|+|++|.|.|+.++
T Consensus 141 ~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 141 AVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999998 9999999999999998654
No 177
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.41 E-value=4.4e-13 Score=113.77 Aligned_cols=79 Identities=22% Similarity=0.269 Sum_probs=68.1
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
+..+.+|+|.||.... ++++|+++|++||.|..| ..++.++|||||+|.+.
T Consensus 96 ~~~~~~l~v~nlp~~~-------------------------t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~ 146 (175)
T 1fje_B 96 VRAARTLLAKNLSFNI-------------------------TEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSE 146 (175)
T ss_dssp TGGGGEEEEESCCSSC-------------------------CHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSH
T ss_pred cccCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCH
Confidence 3456899999997522 248999999999998766 55678899999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
++|.+|+..|||..|+|++|.|.|+.++
T Consensus 147 ~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 147 ADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999999999999999999999998653
No 178
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.40 E-value=7.7e-13 Score=121.69 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=70.8
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCC--CCceeEEEEEEC
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLA--DHMVGNVYVQFR 117 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~t--g~~~G~afV~F~ 117 (320)
...+.+|+|.||.... .++++|+++|++||.|..|.|+.... +.++|||||+|.
T Consensus 207 ~~~~~~l~v~nlp~~~------------------------~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~ 262 (292)
T 2ghp_A 207 TLEGREIMIRNLSTEL------------------------LDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 262 (292)
T ss_dssp CCTTTEEEEEEECTTT------------------------CCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEES
T ss_pred CCCCceEEEECCCccc------------------------CCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeC
Confidence 3466899999997520 12489999999999999999987544 899999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+.++|.+|+ .|||..|+|++|.|.|+..+
T Consensus 263 ~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 263 NKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp SHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999999 99999999999999998654
No 179
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.40 E-value=1.1e-12 Score=113.08 Aligned_cols=81 Identities=14% Similarity=0.201 Sum_probs=69.1
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
.+.+|+|.||... .++++|+++|++||.|..|.|+. ..++.++|||||+|.+.+
T Consensus 103 ~~~~l~V~nLp~~-------------------------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 157 (196)
T 1l3k_A 103 TVKKIFVGGIKED-------------------------TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157 (196)
T ss_dssp CCSEEEEECCTTT-------------------------CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CcceEEEeCCCCC-------------------------CCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHH
Confidence 4578999999652 23489999999999999999987 458899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+|.+|+.. +|..|+|+.|.|.|+..+.
T Consensus 158 ~A~~A~~~-~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 158 SVDKIVIQ-KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp HHHHHHHC-SCCEETTEECEEEECC---
T ss_pred HHHHHHHh-CCcEECCEEEEEEecCChh
Confidence 99999985 8999999999999986544
No 180
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.39 E-value=9.9e-13 Score=100.85 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=59.6
Q ss_pred CCCCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEE
Q 045807 37 HTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQF 116 (320)
Q Consensus 37 h~~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F 116 (320)
+..+.+..+|+|.||... +++++|+++|++||+|..|.|+.. ++|||||+|
T Consensus 5 ~~~~~~~~~l~V~~Lp~~-------------------------~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F 55 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTED-------------------------MTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTF 55 (89)
T ss_dssp ------CCEEEEESCCTT-------------------------CCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEE
T ss_pred CCCCCCCCEEEEeCCCCC-------------------------CCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEE
Confidence 345667789999999853 335899999999999999999863 689999999
Q ss_pred CCHHHHHHHHHHhCCcee--CCeeEEEEeecCC
Q 045807 117 REEEHAANALRNLNGRFY--AGRPIIVDFSPVT 147 (320)
Q Consensus 117 ~~~e~A~~A~~~lnG~~~--~Gr~I~V~~~~~~ 147 (320)
.+.++|+ .|+|..+ .|+.|.|.++.++
T Consensus 56 ~~~~~A~----~~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 56 ADDKVAQ----SLCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp SCHHHHH----HHTTCEEEETTEEEEEEECC--
T ss_pred CCHHHHH----HHcCCCcccCCEEEEEEEcCCC
Confidence 9999988 3667654 5999999998654
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.39 E-value=1.3e-12 Score=119.65 Aligned_cols=84 Identities=21% Similarity=0.477 Sum_probs=70.3
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
.++.+|+|.||.... ++ ++|.+.|.++|++||.|..|.|+. ++.++|||||+|.+.+
T Consensus 7 ~~~~~l~V~nlp~~~--------------~~-------~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~ 63 (282)
T 3pgw_A 7 RPNHTIYINNLNEKI--------------KK-------DELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVS 63 (282)
T ss_pred CCCCEEEEeCCCCCC--------------CH-------HHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHH
Confidence 367899999997532 22 223344779999999999999876 6678999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|++|++.|||..|.|+.|.|.|+...
T Consensus 64 ~a~~A~~~l~g~~~~g~~l~v~~a~~~ 90 (282)
T 3pgw_A 64 SATNALRSMQGFPFYDKPMRIQYAKTD 90 (282)
T ss_pred HHHHHHHHhcCCeeCCcEEEEEEeccC
Confidence 999999999999999999999998543
No 182
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.38 E-value=1.3e-12 Score=112.53 Aligned_cols=82 Identities=13% Similarity=0.170 Sum_probs=71.6
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEEC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFR 117 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~ 117 (320)
.|..+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~-------------------------te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 63 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFET-------------------------TDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63 (196)
T ss_dssp CCGGGGEEEEESCCTTC-------------------------CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeC
Confidence 44567899999997522 3489999999999999999986 467889999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+.++|++|+.. +|..|.|+.|.|.++..
T Consensus 64 ~~~~A~~A~~~-~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 64 TVEEVDAAMNA-RPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp SHHHHHHHHHT-CSCEETTEECEEEECCC
T ss_pred CHHHHHHHHhc-CCCEECCEEeeeecccC
Confidence 99999999985 99999999999999854
No 183
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.38 E-value=1.5e-12 Score=114.01 Aligned_cols=77 Identities=16% Similarity=0.300 Sum_probs=67.5
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHH
Q 045807 43 SPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHA 122 (320)
Q Consensus 43 S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A 122 (320)
..+|+|.||... +++++|.++|++||+|..|.|+...++.++|||||+|++.++|
T Consensus 109 ~~~l~V~nLp~~-------------------------~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A 163 (193)
T 2voo_A 109 NRSVYIKGFPTD-------------------------ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESA 163 (193)
T ss_dssp HTEEEEECCCTT-------------------------CCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHH
T ss_pred cCEEEecCCCCc-------------------------CCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHH
Confidence 478999999752 2348999999999999999999877789999999999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEeec
Q 045807 123 ANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 123 ~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
++|+..++ ..|+|++|.|.+..
T Consensus 164 ~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 164 KKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHHHHCTT-CEETTEECEEEETT
T ss_pred HHHHHhCC-CeECCEEEEEEEhH
Confidence 99998665 59999999999864
No 184
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.36 E-value=1.3e-12 Score=114.36 Aligned_cols=82 Identities=20% Similarity=0.311 Sum_probs=69.7
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
.+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+.+
T Consensus 27 ~~~~l~V~nLp~~~-------------------------t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 81 (216)
T 2qfj_A 27 IMSRVYVGSIYYEL-------------------------GEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPE 81 (216)
T ss_dssp HHTEEEEECCCTTC-------------------------CHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHH
T ss_pred cCCEEEEECCCCCC-------------------------CHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHH
Confidence 45789999997522 3489999999999999999986 457889999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+|++|++.|||..|.|+.|.|.++....
T Consensus 82 ~A~~A~~~l~~~~~~g~~l~v~~~~~~~ 109 (216)
T 2qfj_A 82 AAQLALEQMNSVMLGGRNIKVGRPSNIG 109 (216)
T ss_dssp HHHHHHHHHSSCCCC-CCCEEECCSCCG
T ss_pred HHHHHHHHccCCeeCCeeEEEecCCCcc
Confidence 9999999999999999999999876544
No 185
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.2e-12 Score=107.26 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECC----HHH----HHHHHH--HhCCceeCCeeEEEEeecC
Q 045807 81 FYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFRE----EEH----AANALR--NLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~----~e~----A~~A~~--~lnG~~~~Gr~I~V~~~~~ 146 (320)
++++|+++|++||+|.+|.++. +.||.++|||||+|.+ +.+ |.+|+. .|||..|+|++|.|.+-..
T Consensus 19 te~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 19 QDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp CHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCT
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcc
Confidence 4589999999999999999976 7899999999999996 322 889988 8999999999999999754
No 186
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4e-12 Score=100.05 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 81 FYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
++++|+++|++||+|+.|.|+. .++|||||+|++.++|+.|++.+++ +.|++|.|.|+....
T Consensus 30 te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 4589999999999999999983 5689999999999999999998665 689999999986544
No 187
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.35 E-value=1.7e-12 Score=98.08 Aligned_cols=71 Identities=14% Similarity=0.313 Sum_probs=62.1
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcC----C-------CeeEEEEecCCCCCcee
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKY----G-------EIESLNICDNLADHMVG 110 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~----G-------~I~~v~i~~~~tg~~~G 110 (320)
.+.+|+|.||.... ++++|+++|++| | +|..|.|... +|
T Consensus 5 ~~~~l~V~nLp~~~-------------------------t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg 54 (87)
T 2hzc_A 5 SARRLYVGNIPFGI-------------------------TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KN 54 (87)
T ss_dssp GGGEEEEESCCTTC-------------------------CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SS
T ss_pred CCCEEEEeCCCCCC-------------------------CHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----Cc
Confidence 46789999997522 348999999999 8 9999998753 69
Q ss_pred EEEEEECCHHHHHHHHHHhCCceeCCeeEEEEe
Q 045807 111 NVYVQFREEEHAANALRNLNGRFYAGRPIIVDF 143 (320)
Q Consensus 111 ~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~ 143 (320)
||||+|.+.++|++|+ .|||..|.|++|.|+.
T Consensus 55 ~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 55 FAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp EEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred EEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 9999999999999999 9999999999999974
No 188
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1e-12 Score=105.18 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=63.3
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCC---CCceeEEEEEEC
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLA---DHMVGNVYVQFR 117 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~t---g~~~G~afV~F~ 117 (320)
.+.+|+|.||... +++++|+++|++||+|. +.++. ..+ +.++|||||+|.
T Consensus 7 ~~~~lfVgnLp~~-------------------------~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~ 60 (114)
T 2dnl_A 7 GSRKVFVGGLPPD-------------------------IDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQ 60 (114)
T ss_dssp CCCCEEEECCCTT-------------------------CCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCS
T ss_pred CCCEEEEcCCCCC-------------------------CCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEEC
Confidence 5688999999752 23589999999999999 77664 344 789999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 118 EEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 118 ~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+.++|++|++.|+ .++|+.|.+..+..
T Consensus 61 ~~~~a~~Ai~~~~--~~~G~~~~~~~~~~ 87 (114)
T 2dnl_A 61 EESSVQALIDACL--EEDGKLYLCVSSPT 87 (114)
T ss_dssp SHHHHHHHHHHSE--EETTEEEEEECCSS
T ss_pred CHHHHHHHHHhhh--hcCCcEEEeccCCC
Confidence 9999999999995 37888888876543
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.33 E-value=9.4e-12 Score=107.84 Aligned_cols=77 Identities=27% Similarity=0.235 Sum_probs=66.9
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCC-CeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYG-EIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G-~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
++.+|+|.||.... ++++|+++|++|| +|..|.|+.. .+|+|||+|.+.+
T Consensus 119 ~~~~l~v~nl~~~~-------------------------~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~ 169 (198)
T 1qm9_A 119 PSATLHLSNIPPSV-------------------------SEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVE 169 (198)
T ss_dssp CCCEEEECCCCTTC-------------------------CHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHH
T ss_pred CccEEEEeCCCCCC-------------------------CHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHH
Confidence 47889999997522 2489999999999 9999999653 2699999999999
Q ss_pred HHHHHHHHhCCceeC-CeeEEEEeecCC
Q 045807 121 HAANALRNLNGRFYA-GRPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~-Gr~I~V~~~~~~ 147 (320)
+|.+|+..|||..|+ |++|.|.|+..+
T Consensus 170 ~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 170 EAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 999999999999999 999999998653
No 190
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.31 E-value=3.8e-12 Score=113.66 Aligned_cols=78 Identities=29% Similarity=0.415 Sum_probs=68.2
Q ss_pred CCCCeEEecCCCC-CCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 41 SISPTLLLSNMYQ-RPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 41 ~~S~tl~i~Nl~~-~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
..+.+|+|.||.. .. ++++|+++|++||+|..|.|+... +|||||+|.+.
T Consensus 32 ~~~~~l~V~nLp~~~~-------------------------te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~ 82 (229)
T 2adc_A 32 AGNSVLLVSNLNPERV-------------------------TPQSLFILFGVYGDVQRVKILFNK----KENALVQMADG 82 (229)
T ss_dssp CCCSEEEEESCCTTTC-------------------------CHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCH
T ss_pred CCCCEEEEeCCCcccC-------------------------CHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCH
Confidence 3678999999974 22 248999999999999999998643 69999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
++|++|++.|||..|.|++|.|.|+...
T Consensus 83 ~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 83 NQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp HHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred HHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 9999999999999999999999998654
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.31 E-value=6.9e-12 Score=114.73 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=65.6
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
.+.+|+|.||... .++++|+++|++||.|+.|.|+... +|||||+|.+.++
T Consensus 206 ~~~~l~v~nl~~~-------------------------~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~ 256 (282)
T 3pgw_A 206 PNHILFLTNLPEE-------------------------TNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQ 256 (282)
T ss_pred CCCEEEEeCCCCc-------------------------CCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHH
Confidence 4678999998642 2358999999999999999998532 5899999999999
Q ss_pred HHHHHHHhCCceeC-CeeEEEEeec
Q 045807 122 AANALRNLNGRFYA-GRPIIVDFSP 145 (320)
Q Consensus 122 A~~A~~~lnG~~~~-Gr~I~V~~~~ 145 (320)
|.+|+..|||..|. |+.|+|+|+.
T Consensus 257 A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 257 AGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99999999999999 9999999974
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.31 E-value=1.2e-11 Score=113.34 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=71.5
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
...+|+|.||.... ++++|.++|++||.|..|.|+. ..++.++|||||+|.+.+
T Consensus 94 ~~~~l~v~nlp~~~-------------------------t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 148 (284)
T 3smz_A 94 TDALLCVANLPPSL-------------------------TQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKD 148 (284)
T ss_dssp CSCEEEEESCCTTC-------------------------CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCCEEEEcCCCCcC-------------------------CHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHH
Confidence 45789999997522 2489999999999999999876 568899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|.+|+..|||..|+|++|.|.|+...
T Consensus 149 ~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 149 SAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 999999999999999999999998643
No 193
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.29 E-value=8.4e-12 Score=105.19 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=67.4
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCC--CceeEEEEEECC
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLAD--HMVGNVYVQFRE 118 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg--~~~G~afV~F~~ 118 (320)
.+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++ .++|||||+|.+
T Consensus 2 ~~~~l~V~nLp~~~-------------------------te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~ 56 (175)
T 3nmr_A 2 DAIKMFVGQVPRTW-------------------------SEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYT 56 (175)
T ss_dssp CCEEEEEESCCTTC-------------------------CHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESS
T ss_pred CceEEEEeCCCCCC-------------------------CHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECC
Confidence 45789999997522 3489999999999999999986 4444 789999999999
Q ss_pred HHHHHHHHHHhCCceeC---CeeEEEEeecC
Q 045807 119 EEHAANALRNLNGRFYA---GRPIIVDFSPV 146 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~---Gr~I~V~~~~~ 146 (320)
.++|++|++.|||..+. ++.|.|.++..
T Consensus 57 ~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~ 87 (175)
T 3nmr_A 57 RKAALEAQNALHNMKVLPGMHHPIQMKPADS 87 (175)
T ss_dssp HHHHHHHHHHHTTTCCCTTCSSCCEEEECGG
T ss_pred HHHHHHHHHHhcCcEEccCCccceEEccccc
Confidence 99999999999998775 68888888653
No 194
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2.6e-12 Score=97.64 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=60.5
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
.+.+|+|.||.... ++++|+++|++||+|..|.|+.. ++|||||+|.+.++
T Consensus 4 ~~~~l~V~nLp~~~-------------------------te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~ 54 (88)
T 1wf0_A 4 GSSGVFVGRCTGDM-------------------------TEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQI 54 (88)
T ss_dssp CCCEEEEESCCSSS-------------------------CHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHH
T ss_pred CCcEEEEeCCCCCC-------------------------CHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHH
Confidence 56899999997522 34899999999999999999763 57999999999999
Q ss_pred HHHHHHHhCCc--eeCCeeEEEEeecCCC
Q 045807 122 AANALRNLNGR--FYAGRPIIVDFSPVTD 148 (320)
Q Consensus 122 A~~A~~~lnG~--~~~Gr~I~V~~~~~~~ 148 (320)
|++| ++. .+.|++|.|.++..+.
T Consensus 55 a~~~----~~~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 55 AQSL----CGEDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp HHHT----TTCEEEETTEEEEEECCCCCC
T ss_pred HHHH----hcCCceeCCEEEEEEecCCCC
Confidence 9754 444 4599999999986543
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.28 E-value=1.1e-11 Score=112.89 Aligned_cols=81 Identities=23% Similarity=0.317 Sum_probs=69.7
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~ 121 (320)
.+.+|+|.||.... ++++|+++|++||.|..|.|+.+.++.++|||||+|.+.++
T Consensus 95 ~~~~l~v~nl~~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 149 (261)
T 3sde_A 95 HGAALTVKNLSPVV-------------------------SNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPP 149 (261)
T ss_dssp CSSEEEEESCCTTC-------------------------CHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHH
T ss_pred cCCcccccCCCCCC-------------------------CHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHH
Confidence 35789999997422 24899999999999999999876788999999999999999
Q ss_pred HHHHHHHh-CCceeC---CeeEEEEeecCC
Q 045807 122 AANALRNL-NGRFYA---GRPIIVDFSPVT 147 (320)
Q Consensus 122 A~~A~~~l-nG~~~~---Gr~I~V~~~~~~ 147 (320)
|.+|+..| +|.++. |++|.|.++...
T Consensus 150 A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 150 ARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 99999999 556665 999999998654
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.28 E-value=3.1e-11 Score=107.69 Aligned_cols=76 Identities=26% Similarity=0.227 Sum_probs=66.2
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCC-CeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYG-EIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G-~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
++.+|+|.||.... ++++|+++|++|| +|..|.|+.. .+|||||+|.+.+
T Consensus 150 ~~~~l~V~nlp~~~-------------------------t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~ 200 (229)
T 2adc_A 150 PSATLHLSNIPPSV-------------------------SEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVE 200 (229)
T ss_dssp SCSEEEEECCCTTC-------------------------CHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHH
T ss_pred CCCEEEEeCCCccC-------------------------CHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHH
Confidence 46889999996522 2489999999999 9999999642 2689999999999
Q ss_pred HHHHHHHHhCCceeC-CeeEEEEeecC
Q 045807 121 HAANALRNLNGRFYA-GRPIIVDFSPV 146 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~-Gr~I~V~~~~~ 146 (320)
+|.+|+..|||..|. |++|.|.|+..
T Consensus 201 ~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 201 EAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp HHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred HHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 999999999999999 99999999864
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.27 E-value=5.6e-12 Score=109.28 Aligned_cols=77 Identities=30% Similarity=0.416 Sum_probs=67.5
Q ss_pred CCCeEEecCCCC-CCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQ-RPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~-~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
.+.+|+|.||.. .. ++++|+++|++||+|..|.|+... +|||||+|.+.+
T Consensus 2 ~~~~l~v~nlp~~~~-------------------------~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~ 52 (198)
T 1qm9_A 2 GNSVLLVSNLNPERV-------------------------TPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGN 52 (198)
T ss_dssp CCCEEEEECCCSSSC-------------------------CHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTH
T ss_pred CCcEEEEeCCCcccC-------------------------CHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHH
Confidence 468999999974 22 248999999999999999998643 689999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
+|++|+..|||..|.|++|.|.|+...
T Consensus 53 ~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 53 QAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp HHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred HHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 999999999999999999999998654
No 198
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.26 E-value=7.3e-12 Score=105.08 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=67.5
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCceeEEEEEECCHH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICD-NLADHMVGNVYVQFREEE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~-~~tg~~~G~afV~F~~~e 120 (320)
.+.+|+|.||.... ++++|+++|++||+|..|.|+. ..++.++|||||+|.+.+
T Consensus 2 ~~~~l~v~nLp~~~-------------------------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 56 (167)
T 2cjk_A 2 ESCKMFIGGLNWDT-------------------------TEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPS 56 (167)
T ss_dssp GGGEEEECSCCTTC-------------------------CHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTH
T ss_pred CCcEEEEeCCCCCC-------------------------CHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHH
Confidence 35789999997522 3489999999999999999987 468899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 121 HAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 121 ~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+|++|+.. +..|+|+.|.|.++..
T Consensus 57 ~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 57 SVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp HHHHHHHS--CCEETTEECCCEECCC
T ss_pred HHHHHHhc--ccccCCeEcccccccc
Confidence 99999994 6789999999998754
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.24 E-value=1.6e-11 Score=112.80 Aligned_cols=83 Identities=16% Similarity=0.140 Sum_probs=67.5
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCC-CeeEEEEecCCCCCceeEEEEEECCH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYG-EIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G-~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
..+.+|+|.||.... ++++|.++|++|| +|..|.|+....+.++|||||+|.+.
T Consensus 115 ~~~~~l~v~nlp~~~-------------------------t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~ 169 (292)
T 2ghp_A 115 LTECTLWMTNFPPSY-------------------------TQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSK 169 (292)
T ss_dssp CCSCEEEEECCCTTC-------------------------CHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSH
T ss_pred CCCCEEEEECCCCCC-------------------------CHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCH
Confidence 357899999997522 2488999999999 99999998765578899999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
++|.+|+..|||..|.|++|.|.|+.+..
T Consensus 170 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 170 EDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 99999999999999999999999986543
No 200
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.23 E-value=2.1e-12 Score=109.55 Aligned_cols=83 Identities=19% Similarity=0.184 Sum_probs=68.4
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC
Q 045807 39 KPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 39 ~p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
.|..+.+|+|.||.... ++++|+++|.+||.|..+.|....++.++|||||+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~-------------------------t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~ 63 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNK-------------------------SVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFES 63 (175)
T ss_dssp SCSSSEEEEEECCCTTS-------------------------CHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESS
T ss_pred CCCCCcEEEEeCCCCCC-------------------------CHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECC
Confidence 45577899999997522 34889999999988776444444567789999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 119 EEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
.++|++|++ |||..|.|++|.|.++...
T Consensus 64 ~~~a~~A~~-l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 64 AEDLEKALE-LTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp HHHHHHHHH-GGGEEETTEEEEEECCCCS
T ss_pred HHHHHHHHh-cCCCEeCCeEEEEecCCCc
Confidence 999999995 9999999999999998654
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.20 E-value=3e-11 Score=109.97 Aligned_cols=77 Identities=21% Similarity=0.297 Sum_probs=67.3
Q ss_pred CCCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 40 PSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 40 p~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
++.+.+|+|.||... +++++|.++|++||.|..|.|... +|||||+|.+.
T Consensus 19 ~~~~~~l~V~nLp~~-------------------------~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~ 68 (261)
T 3sde_A 19 YTQRCRLFVGNLPTD-------------------------ITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESR 68 (261)
T ss_dssp SCGGGEEEEESCCTT-------------------------CCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSH
T ss_pred CCCCCEEEEECCCCC-------------------------CCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCH
Confidence 345678999999752 235899999999999999999653 69999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 120 EHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 120 e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
++|.+|+..|||..|.|+.|.|.|+..
T Consensus 69 ~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 69 TLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHHHHcCCcEECCceeEeeeccc
Confidence 999999999999999999999999864
No 202
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.20 E-value=3.3e-11 Score=106.37 Aligned_cols=78 Identities=17% Similarity=0.153 Sum_probs=64.5
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCe--eEEEEecCCCCCceeEEEEEECC
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEI--ESLNICDNLADHMVGNVYVQFRE 118 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I--~~v~i~~~~tg~~~G~afV~F~~ 118 (320)
.++.+|+|.||.... ++++|+++|++||.| ..|.|+... +..+|+|||+|.+
T Consensus 121 ~p~~~l~v~NLp~~~-------------------------t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~ 174 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEV-------------------------TEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDS 174 (205)
T ss_dssp CCCSEEEEEEECTTC-------------------------CHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSS
T ss_pred CCcceEEEeCCCCCC-------------------------CHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCC
Confidence 356789999997522 348999999999999 899887644 4456999999999
Q ss_pred HHHHHHHHHHhCCceeCCe----eEEEEee
Q 045807 119 EEHAANALRNLNGRFYAGR----PIIVDFS 144 (320)
Q Consensus 119 ~e~A~~A~~~lnG~~~~Gr----~I~V~~~ 144 (320)
.++|.+|+..|||..|.|. +|.|-|+
T Consensus 175 ~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 175 KSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9999999999999999987 5666554
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.16 E-value=5.6e-11 Score=112.94 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=63.1
Q ss_pred CCCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHH
Q 045807 41 SISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120 (320)
Q Consensus 41 ~~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e 120 (320)
.++++|+|.|+-.+ |.+++++|+++|++||+|..|.|+. .+|||||+|.+.+
T Consensus 16 ~ps~~l~VgN~gl~-----------------------~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~ 67 (345)
T 3tht_A 16 YATQSLVVANGGLG-----------------------NGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTE 67 (345)
T ss_dssp SCCSEEEEETCSGG-----------------------GTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHH
T ss_pred CCCCEEEEEcCCCC-----------------------CCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHH
Confidence 46789999996321 2234699999999999999998864 4799999999999
Q ss_pred HHHHHHHHhCCcee---CCe--eEEEEeec
Q 045807 121 HAANALRNLNGRFY---AGR--PIIVDFSP 145 (320)
Q Consensus 121 ~A~~A~~~lnG~~~---~Gr--~I~V~~~~ 145 (320)
+|++|+++|||..+ .|+ +|.|.|+.
T Consensus 68 ~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 68 ESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp HHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred HHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 99999999999988 245 67888874
No 204
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.11 E-value=1.5e-10 Score=99.63 Aligned_cols=75 Identities=13% Similarity=0.270 Sum_probs=62.4
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcC----C-------CeeEEEEecCCCCCcee
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKY----G-------EIESLNICDNLADHMVG 110 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~----G-------~I~~v~i~~~~tg~~~G 110 (320)
.+.+|+|.||.... ++++|+++|++| | .|..+.+. .++|
T Consensus 3 ~~~~l~V~nLp~~~-------------------------te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g 52 (198)
T 2yh0_A 3 MARRLYVGNIPFGI-------------------------TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKN 52 (198)
T ss_dssp -CCEEEEESCCTTC-------------------------CHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTT
T ss_pred ceeEEEEcCCCCCC-------------------------CHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCC
Confidence 46899999997522 348999999999 5 66666664 3479
Q ss_pred EEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 111 NVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 111 ~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
||||+|.+.++|++|+ .|||..|.|++|.|.++...
T Consensus 53 ~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 53 FAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp EEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCC
T ss_pred EEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCC
Confidence 9999999999999999 89999999999999998543
No 205
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.10 E-value=1.6e-10 Score=97.23 Aligned_cols=75 Identities=13% Similarity=0.249 Sum_probs=63.4
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcC----C-------CeeEEEEecCCCCCcee
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKY----G-------EIESLNICDNLADHMVG 110 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~----G-------~I~~v~i~~~~tg~~~G 110 (320)
.+.+|+|.||.... ++++|+++|++| | .|..+.+.. ++|
T Consensus 3 ~~~~l~V~nLp~~~-------------------------t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g 52 (172)
T 2g4b_A 3 SARRLYVGNIPFGI-------------------------TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKN 52 (172)
T ss_dssp GGGEEEEESCCTTC-------------------------CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTT
T ss_pred cccEEEEcCCCccc-------------------------CHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCC
Confidence 35789999997522 348999999999 7 777777754 369
Q ss_pred EEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 045807 111 NVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVT 147 (320)
Q Consensus 111 ~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~ 147 (320)
||||+|.+.++|++|+ .|||..|.|++|.|.++...
T Consensus 53 ~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 53 FAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (172)
T ss_dssp EEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSC
T ss_pred EEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCccc
Confidence 9999999999999999 89999999999999997643
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=2.2e-10 Score=88.01 Aligned_cols=60 Identities=23% Similarity=0.516 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 045807 79 EDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~ 146 (320)
+.+..+|.+.|.+||+|..|+|+. +.+||+|.+.++|.+|++ |||..+.|+.|+|.++++
T Consensus 26 ~~l~~~L~~~F~~~G~Vi~vr~~~-------d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 26 DALIDELLQQFASFGEVILIRFVE-------DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECS-------SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred HHHHHHHHHHHHhCCCeEEEEEec-------CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 356688999999999999999986 348999999999999999 999999999999999863
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=1.2e-09 Score=84.30 Aligned_cols=58 Identities=26% Similarity=0.457 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 79 EDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 79 ~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
+.+..+|.+.|.+||.|..|+|+.. -+||+|.+.++|.+||+ |||..++|+.|+|.+-
T Consensus 35 ~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 35 EDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence 4667889999999999999999874 39999999999999999 9999999999999874
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=5.2e-08 Score=78.93 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=62.1
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECC-HH
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFRE-EE 120 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~-~e 120 (320)
..-+|+|.||...+ ++.++|+++|++||+|..|.|+...+ .|||.|.+ +.
T Consensus 17 ~G~il~v~~l~~~~------------------------~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~ 67 (121)
T 1owx_A 17 IGCLLKFSGDLDDQ------------------------TCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAK 67 (121)
T ss_dssp CCCEEEEEESCCSS------------------------CCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHH
T ss_pred CCeEEEEecCCCCc------------------------CCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChH
Confidence 34678899987631 12489999999999999999987432 69999999 89
Q ss_pred HHHHHHHHhC--CceeCCeeEEEEeec
Q 045807 121 HAANALRNLN--GRFYAGRPIIVDFSP 145 (320)
Q Consensus 121 ~A~~A~~~ln--G~~~~Gr~I~V~~~~ 145 (320)
+|..|+.+|| |..|.|..++++...
T Consensus 68 ~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 68 EALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp HHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred HHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 9999999995 789999999998864
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=3.9e-05 Score=60.55 Aligned_cols=73 Identities=19% Similarity=0.331 Sum_probs=59.2
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhcC-----CCeeEEEEecCCCCCceeEEEEEE
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSKY-----GEIESLNICDNLADHMVGNVYVQF 116 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k~-----G~I~~v~i~~~~tg~~~G~afV~F 116 (320)
...||-|-||++- |.. .-|..+.+.| |.|++|.+.... |-|+|+|
T Consensus 20 ~~rtiaL~~ipDt--------------vnd-----------arIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef 69 (117)
T 2l9w_A 20 LETLICLFPLSDK--------------VSP-----------SLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIF 69 (117)
T ss_dssp TTSCEEEECCCTT--------------CCH-----------HHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEEC
T ss_pred CCcEEEEecCCCC--------------CCH-----------HHHHHHHhhhhccCccceeEEEEecCC-----CceEEEE
Confidence 3578899888752 122 5677778888 999999886532 6799999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 117 REEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 117 ~~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
.+...|-+|.-+|+|..|+|++|.|.-.
T Consensus 70 ~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 70 RDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp SCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred ccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 9999999999999999999999998643
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.78 E-value=6.5e-05 Score=58.76 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 045807 81 FYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 148 (320)
Q Consensus 81 ~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~~~~ 148 (320)
+.+.++.+|.+|+++......+. -.-+-|.|.++++|.+|-..|++..|.|..|+|.|+++..
T Consensus 23 lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 23 TRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp HHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred HHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 34789999999999998777653 2478999999999999999999999999999999997543
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.07 E-value=0.0014 Score=52.40 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC-eeEEEEe
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAG-RPIIVDF 143 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~G-r~I~V~~ 143 (320)
..|..+|++||.|+....... ..+..|.|.+..+|++||. .||..|+| -.|-|..
T Consensus 38 ~~VL~~F~~~G~Iv~~~~~~~-----~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 38 SYILLQFAQYGNILKHVMSNT-----GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp HHHHHHHHTTSCEEEEEECSS-----SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred HHHHHHHHhhCcEEEeccCCC-----CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 689999999999998887322 3599999999999999999 79999985 5555554
No 212
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.40 E-value=0.0026 Score=51.65 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCCeeE-EEEecC-------------CCC-CceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 82 YEDLFEELSKYGEIES-LNICDN-------------LAD-HMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 82 eedL~~~F~k~G~I~~-v~i~~~-------------~tg-~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
...|..+|++||.|+. +.+... ... ....++.|+|.+..+|++|+. .||..|+|-.|-|..+.
T Consensus 20 ~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 20 ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEECC
Confidence 4678999999999977 222210 000 124689999999999999999 89999999988887763
No 213
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.80 E-value=0.0031 Score=51.71 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=36.7
Q ss_pred CCceeEEEEEECCHHHHHHHHHHh-CCceeCCeeEEEEeecC
Q 045807 106 DHMVGNVYVQFREEEHAANALRNL-NGRFYAGRPIIVDFSPV 146 (320)
Q Consensus 106 g~~~G~afV~F~~~e~A~~A~~~l-nG~~~~Gr~I~V~~~~~ 146 (320)
...+|+++|+|.+.++|++|++.| ||..++| .|.|.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 356899999999999999999999 9999999 999998754
No 214
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.59 E-value=0.0097 Score=48.90 Aligned_cols=34 Identities=9% Similarity=0.122 Sum_probs=26.6
Q ss_pred EEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCc
Q 045807 98 LNICDNLADHMVGNVYVQFREEEHAANALRNLNGR 132 (320)
Q Consensus 98 v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~ 132 (320)
+.|+.+.. .++||+||+|.+.++|++|++.+++.
T Consensus 3 ~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 3 YKLILNGK-TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEecCc-cccchhHHHHHHHHhHHHHHHhhccc
Confidence 44444322 57999999999999999999988753
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.09 E-value=0.075 Score=40.87 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhC
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLN 130 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~ln 130 (320)
.||.++|+.||-|.=-+|-+ --|||.|.+++.|..|+..+.
T Consensus 30 ~DI~~lFs~fggv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 30 SDLYQLFSAFGNIQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp HHHHHHHTTTCSCCCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 79999999999665334432 389999999999999999774
No 216
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.51 E-value=0.22 Score=37.77 Aligned_cols=65 Identities=26% Similarity=0.504 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCCeeEEEEec-CCC--CCceeEEEEEECCHHHHHHHHHHhCCceeC---C--eeEEEEeecCC
Q 045807 83 EDLFEELSKYGEIESLNICD-NLA--DHMVGNVYVQFREEEHAANALRNLNGRFYA---G--RPIIVDFSPVT 147 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~-~~t--g~~~G~afV~F~~~e~A~~A~~~lnG~~~~---G--r~I~V~~~~~~ 147 (320)
+++.+.++.+..+.....+. +.+ ...-.-|||.|.+.+++..-.+.++|..|- | -+-.|+||+-+
T Consensus 16 eeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP~q 88 (91)
T 1uw4_A 16 EQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQ 88 (91)
T ss_dssp HHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECSSC
T ss_pred HHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcCCC
Confidence 66667777777776655543 221 233578999999999999999999998873 2 23357777644
No 217
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=93.85 E-value=0.024 Score=41.23 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=24.1
Q ss_pred CCccccCceeccCCCCCCccccCCCCC
Q 045807 14 DRVNCPFYFKIGACRHGDRCSRLHTKP 40 (320)
Q Consensus 14 ~~~~c~f~~k~g~cr~g~~cs~~h~~p 40 (320)
-..+|.+|.++|.|++|+.|.+.|...
T Consensus 11 kt~~C~~f~~~G~C~~G~~C~f~H~~~ 37 (77)
T 1m9o_A 11 KTELCRTYSESGRCRYGAKCQFAHGLG 37 (77)
T ss_dssp CSCCCSGGGGTSCCTTTTTCSSCSSSC
T ss_pred cchhCHHhhhCCCcCCCCCccCCCCCh
Confidence 368899999899999999999999864
No 218
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.43 E-value=0.46 Score=36.80 Aligned_cols=71 Identities=15% Similarity=0.066 Sum_probs=52.3
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCCCCChhhHhhhHHHHHHHHHHHHhc-----CCCeeEEEEecCCCCCceeEEEEEE
Q 045807 42 ISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDFYEDLFEELSK-----YGEIESLNICDNLADHMVGNVYVQF 116 (320)
Q Consensus 42 ~S~tl~i~Nl~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~eedL~~~F~k-----~G~I~~v~i~~~~tg~~~G~afV~F 116 (320)
.-.+|.|.||.+... .+.|.-.|++ =|+|..|.... +-|+|+|
T Consensus 7 ~~~~I~V~~lPp~~~-------------------------~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF 54 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVP-------------------------DELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTF 54 (104)
T ss_dssp CCCEEEEESCCTTSC-------------------------HHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEE
T ss_pred CccEEEEECCCCCCC-------------------------hhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEE
Confidence 347899999875221 2567778887 27899888744 5789999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 045807 117 REEEHAANALRNLNGRFYAGRPIIVDFSP 145 (320)
Q Consensus 117 ~~~e~A~~A~~~lnG~~~~Gr~I~V~~~~ 145 (320)
.+...|+..++ -.-..|.|-+|.|.-+.
T Consensus 55 ~d~~va~rVL~-k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 55 REPADAERVLA-QADHELHGAQLSLRPAP 82 (104)
T ss_dssp SSHHHHHHHHT-CSCCBSSSSBCEEEECC
T ss_pred cChHHHHHHhc-CCcceecCeEEEEEcCC
Confidence 99999998877 33567788888886543
No 219
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=91.78 E-value=0.1 Score=40.24 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhC
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLN 130 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~ln 130 (320)
.||..+|+.||.|.=-+| .. .-|||.|.+++.|..|+..+.
T Consensus 20 ~Di~~lFs~fggv~I~Wi-dD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 20 SDLYQLFSAFGNIQISWI-DD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HHHHHHTTTSEEEEEEEE-ET------TEEEEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHhccCCEEEEEE-cC------CeEEEEecCHHHHHHHHHhcc
Confidence 799999999995432233 32 389999999999999999875
No 220
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=91.09 E-value=0.041 Score=40.03 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=0.0
Q ss_pred ccccCceeccCCCCCCccccCCCCC
Q 045807 16 VNCPFYFKIGACRHGDRCSRLHTKP 40 (320)
Q Consensus 16 ~~c~f~~k~g~cr~g~~cs~~h~~p 40 (320)
.+|.+|.++|.|++|+.|.+.|...
T Consensus 51 ~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 51 ELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp -------------------------
T ss_pred CcccchhhCcCCCCcCcCCCCCCCC
Confidence 5799999999999999999999754
No 221
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.57 E-value=0.064 Score=38.53 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=19.9
Q ss_pred ccccCceeccCCCCCCccccCCCC
Q 045807 16 VNCPFYFKIGACRHGDRCSRLHTK 39 (320)
Q Consensus 16 ~~c~f~~k~g~cr~g~~cs~~h~~ 39 (320)
.+|..| .+|.|++|+.|.+.|-.
T Consensus 21 ~LC~~~-~~G~C~~G~~C~FAHG~ 43 (69)
T 2d9m_A 21 SICDRY-MNGTCPEGNSCKFAHGN 43 (69)
T ss_dssp SBCHHH-HHSCCSSCSSCSSBSSH
T ss_pred ccCccc-CcCCCCCCCccCCcCCH
Confidence 689988 67999999999998853
No 222
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=90.03 E-value=0.098 Score=40.21 Aligned_cols=26 Identities=31% Similarity=0.772 Sum_probs=21.7
Q ss_pred CCccccCceeccCCCCCCccccCCCCC
Q 045807 14 DRVNCPFYFKIGACRHGDRCSRLHTKP 40 (320)
Q Consensus 14 ~~~~c~f~~k~g~cr~g~~cs~~h~~p 40 (320)
-.++|.||. .|.|.+|+.|.+.|..+
T Consensus 12 k~~lC~~f~-~G~C~~G~~C~f~H~~~ 37 (98)
T 2cqe_A 12 KRELCKFYI-TGFCARAENCPYMHGDF 37 (98)
T ss_dssp CCSBCTTTT-TTCCSCSTTCSSBSSSS
T ss_pred CCccCcccc-cCcCCCCCCCCCCCCCC
Confidence 367899984 79999999999999843
No 223
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=89.30 E-value=0.15 Score=39.23 Aligned_cols=24 Identities=33% Similarity=0.760 Sum_probs=20.8
Q ss_pred cccCceeccCCCCCCccccCCCCC
Q 045807 17 NCPFYFKIGACRHGDRCSRLHTKP 40 (320)
Q Consensus 17 ~c~f~~k~g~cr~g~~cs~~h~~p 40 (320)
.|.||.+.|.|.+|+.|.+.|...
T Consensus 38 ~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 38 PCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp BCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred cCcCcccCCcCCCCCCCcccCCCC
Confidence 488887889999999999999843
No 224
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=89.12 E-value=0.22 Score=48.73 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHH
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALR 127 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~ 127 (320)
+.+|.+.|++||+|.++.+.+.. .-||.|+|.+.+++..++.
T Consensus 66 ~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 66 ENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp -CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred HHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 37899999999999999987632 2599999999998886654
No 225
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.50 E-value=0.12 Score=37.70 Aligned_cols=25 Identities=36% Similarity=0.922 Sum_probs=18.3
Q ss_pred CccccCceeccCCCCCCccccCCCCC
Q 045807 15 RVNCPFYFKIGACRHGDRCSRLHTKP 40 (320)
Q Consensus 15 ~~~c~f~~k~g~cr~g~~cs~~h~~p 40 (320)
.++|.||.. |.|..|+.|.+.|...
T Consensus 10 ~~~C~~fl~-G~C~~G~~C~fsH~~~ 34 (77)
T 2d9n_A 10 TVVCKHWLR-GLCKKGDQCEFLHEYD 34 (77)
T ss_dssp TSBCHHHHT-TCCSCTTSSSSBCSCC
T ss_pred ceeCHhHcc-CcCCCCCCCCCccccc
Confidence 467777766 8888888888888654
No 226
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=88.25 E-value=0.19 Score=36.35 Aligned_cols=30 Identities=30% Similarity=0.757 Sum_probs=24.6
Q ss_pred CCCCCCccccCceeccCCCCCCccccCCCCC
Q 045807 10 GTEKDRVNCPFYFKIGACRHGDRCSRLHTKP 40 (320)
Q Consensus 10 ~~~~~~~~c~f~~k~g~cr~g~~cs~~h~~p 40 (320)
|...-.+.|.||.. |.|..|+.|.+.|...
T Consensus 11 ~~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 11 MSGEKTVVCKHWLR-GLCKKGDQCEFLHEYD 40 (72)
T ss_dssp SSCCCCSBCHHHHT-TCCCCGGGSSSBCSCC
T ss_pred CCCCcCeeCHHHhc-CCCCCCCCCCCccccc
Confidence 44455788998887 9999999999999854
No 227
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.30 E-value=0.21 Score=36.48 Aligned_cols=26 Identities=38% Similarity=0.865 Sum_probs=23.2
Q ss_pred ccccCceeccCCCCCCccccCCCCCCC
Q 045807 16 VNCPFYFKIGACRHGDRCSRLHTKPSI 42 (320)
Q Consensus 16 ~~c~f~~k~g~cr~g~~cs~~h~~p~~ 42 (320)
..|.||.+.|.|. |+.|.+.|..|..
T Consensus 39 ~~C~~f~~~G~C~-~~~C~f~H~~~~~ 64 (77)
T 2d9n_A 39 PECYFYSKFGECS-NKECPFLHIDPES 64 (77)
T ss_dssp CBCHHHHHTCCCC-CSSCSSBCCCTTS
T ss_pred CCCcccCCCCccC-CCCeeccCCCccc
Confidence 4699999889999 9999999999864
No 228
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=85.11 E-value=2.7 Score=32.09 Aligned_cols=38 Identities=21% Similarity=0.536 Sum_probs=30.0
Q ss_pred eeEEEEEECCHHHHHHHHHHhCCceeCC-----eeEEEEeecC
Q 045807 109 VGNVYVQFREEEHAANALRNLNGRFYAG-----RPIIVDFSPV 146 (320)
Q Consensus 109 ~G~afV~F~~~e~A~~A~~~lnG~~~~G-----r~I~V~~~~~ 146 (320)
-.-|||.|.+.++...-.+.++|..|-+ -+-.|+||+-
T Consensus 53 ~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~APy 95 (97)
T 2l08_A 53 YSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPF 95 (97)
T ss_dssp CCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECCC
T ss_pred ceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecCC
Confidence 3689999999999999999999988732 2445777753
No 229
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=83.81 E-value=0.28 Score=35.37 Aligned_cols=27 Identities=37% Similarity=0.832 Sum_probs=23.1
Q ss_pred CccccCceeccCCCCCCccccCCCCCCC
Q 045807 15 RVNCPFYFKIGACRHGDRCSRLHTKPSI 42 (320)
Q Consensus 15 ~~~c~f~~k~g~cr~g~~cs~~h~~p~~ 42 (320)
...|.||.+.|.|.. +.|.+.|..|..
T Consensus 44 ~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 44 MSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred CCcccccCCCCCCCC-CCeeccCCCccc
Confidence 347999998899999 999999998864
No 230
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=82.06 E-value=0.44 Score=31.77 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=24.8
Q ss_pred CccccCceeccCCCCCCccccCCCCCCCC
Q 045807 15 RVNCPFYFKIGACRHGDRCSRLHTKPSIS 43 (320)
Q Consensus 15 ~~~c~f~~k~g~cr~g~~cs~~h~~p~~S 43 (320)
.-+|.-|..-|-|++|.+|+..|++-.++
T Consensus 20 ~~iC~~FSayGwCp~G~~Cp~SHDiDl~~ 48 (50)
T 2fc6_A 20 TSICDNFSAYGWCPLGPQCPQSHDISGPS 48 (50)
T ss_dssp SCBCSHHHHTCCCTTGGGCSSBCCCCCCC
T ss_pred cchhhhccccccCCCCCCCCccccCCCCC
Confidence 56799999999999999999999875543
No 231
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=66.86 E-value=1.6 Score=31.10 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=19.8
Q ss_pred ccccCceeccCCCCCC-ccccCCCCC
Q 045807 16 VNCPFYFKIGACRHGD-RCSRLHTKP 40 (320)
Q Consensus 16 ~~c~f~~k~g~cr~g~-~cs~~h~~p 40 (320)
..|.+|. .|.|..|+ .|.+.|...
T Consensus 7 ~vC~~f~-~G~C~rg~~~C~f~H~~~ 31 (70)
T 3d2q_A 7 EVCREYQ-RGNCNRGENDCRFAHPAD 31 (70)
T ss_dssp EBCHHHH-TTCCSSCTTTCSSBCCCT
T ss_pred hhCHHHh-cCCCCCCCCCCCCccCcc
Confidence 4688885 59999999 699999754
No 232
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=64.92 E-value=16 Score=27.14 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=31.6
Q ss_pred HHHHHHHhcCC-CeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCc
Q 045807 83 EDLFEELSKYG-EIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGR 132 (320)
Q Consensus 83 edL~~~F~k~G-~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~ 132 (320)
+.|...+..-| .|..|.++. ...||+||++....+...+++.+.|.
T Consensus 27 ~~L~~~~~~~~l~i~~v~vP~----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 27 GLMASRAEKEQLDVYSILASE----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp HHHHHHHHHTTCCEEEEEECT----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred HHHHHHHHhcCCcEEEEEEec----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 34444433323 366777764 25699999999999988888877773
No 233
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=60.19 E-value=7.6 Score=29.95 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=28.4
Q ss_pred CeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCce
Q 045807 94 EIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRF 133 (320)
Q Consensus 94 ~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~ 133 (320)
.|.+|.++. +.+||.|||=..+.++..|++.+-+..
T Consensus 40 ~I~Si~~~~----~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPE----HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECT----TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecC----CCceEEEEEeCCHHHHHHHHhccccee
Confidence 477777765 357999999999999999988776543
No 234
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=58.34 E-value=5.2 Score=29.46 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=21.4
Q ss_pred ccccCceeccCCCCCC-ccccCCCCCC
Q 045807 16 VNCPFYFKIGACRHGD-RCSRLHTKPS 41 (320)
Q Consensus 16 ~~c~f~~k~g~cr~g~-~cs~~h~~p~ 41 (320)
..|.+|.. |.|..|+ .|.+.|..+.
T Consensus 10 ~VCr~Flr-G~C~r~d~~C~f~H~~~~ 35 (83)
T 3d2n_A 10 EVCREFQR-GTCSRPDTECKFAHPSKS 35 (83)
T ss_dssp EBCTTGGG-TCCCSCTTTCSSBCCCTT
T ss_pred hhcHHHhc-CCCCCCCCCCCCcCCCcc
Confidence 46888887 9999997 9999998764
No 235
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=57.44 E-value=2.2 Score=30.24 Aligned_cols=24 Identities=29% Similarity=0.692 Sum_probs=19.9
Q ss_pred CccccCceeccCCCCCCccccCCCCC
Q 045807 15 RVNCPFYFKIGACRHGDRCSRLHTKP 40 (320)
Q Consensus 15 ~~~c~f~~k~g~cr~g~~cs~~h~~p 40 (320)
...|-+|.+ |.|.+| .|.++|..+
T Consensus 42 ~~vC~~flk-G~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 42 VTVCMDYIK-GRCSRE-KCKYFHPPA 65 (70)
T ss_dssp EEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred ceeccccCc-CCCCCC-CcCeeCCHH
Confidence 456777777 999999 999999765
No 236
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=54.19 E-value=15 Score=35.92 Aligned_cols=42 Identities=21% Similarity=0.445 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCC
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNG 131 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG 131 (320)
.+|.++|+.||.|. |..+.. ..|||.|.+.+.|..|+++++.
T Consensus 454 ~~i~~~fs~fg~v~-V~widd------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 454 SDLYQLFSAFGNIQ-ISWIDD------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp HHHHHHGGGGCCCE-EEECSS------SEEEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCEE-EEEEcC------CeEEEEECCHHHHHHHHHHHHh
Confidence 68999999999653 333332 3799999999999999999863
No 237
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=51.50 E-value=13 Score=26.12 Aligned_cols=54 Identities=19% Similarity=0.354 Sum_probs=35.2
Q ss_pred HHHHHHHhcCC-----CeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeEEEEee
Q 045807 83 EDLFEELSKYG-----EIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFS 144 (320)
Q Consensus 83 edL~~~F~k~G-----~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I~V~~~ 144 (320)
.+|...+..-+ .|-.|.|.. .|.||+-... .|..+++.|++..+.|+.|.|+.+
T Consensus 16 ~~ivg~i~~~~gi~~~~IG~I~i~d-------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 16 VDFVGTIAKIDGVSADDIGIITIMD-------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp HHHHHHHHTSTTCCGGGEEEEEECS-------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred HHHHHHHHHccCCChhhccEEEEeC-------CcEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 34444444333 355566644 4888887654 588899999999999999998865
No 238
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.97 E-value=3.1 Score=31.68 Aligned_cols=21 Identities=29% Similarity=0.786 Sum_probs=9.6
Q ss_pred cccCceeccCCCCCC-ccccCCC
Q 045807 17 NCPFYFKIGACRHGD-RCSRLHT 38 (320)
Q Consensus 17 ~c~f~~k~g~cr~g~-~cs~~h~ 38 (320)
.|.+|.. |.|..|+ .|.+.|.
T Consensus 22 VCr~Flr-G~C~rgd~~C~FsH~ 43 (98)
T 2e5s_A 22 VCREFQR-GNCARGETDCRFAHP 43 (98)
T ss_dssp BCSHHHH-TCCSSHHHHCSSBCC
T ss_pred hhHHHhc-CcCCCCCCCCCCcCC
Confidence 3444443 4454444 4444444
No 239
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=50.13 E-value=9.9 Score=32.74 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=29.5
Q ss_pred eeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 045807 95 IESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYA 135 (320)
Q Consensus 95 I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~ 135 (320)
|.+|.++. +.+||+|||=..+.+...|++.|.+.+..
T Consensus 139 I~Si~~~d----~lkGYIyVEA~~~~~V~~ai~Gi~~vy~~ 175 (200)
T 2exu_A 139 ILSIFQRD----NYTGRIYIEAPKQSVIEKFCNGVPDIYIS 175 (200)
T ss_dssp CCEEECCT----TSTTEEEEECSCHHHHHHHHTTCTTEEEE
T ss_pred EEEEEecC----CCcEEEEEEECCHHHHHHHHhhhhhhhcC
Confidence 66665544 35799999999999999999988886543
No 240
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.88 E-value=2.9 Score=31.84 Aligned_cols=20 Identities=30% Similarity=0.820 Sum_probs=9.7
Q ss_pred hhhcccccccCCCCccccccc
Q 045807 153 TCRQYEENVCNRGGYCNFMHL 173 (320)
Q Consensus 153 ~~~~~~~~~~~~g~~~~~~~~ 173 (320)
.|..|+.|.|.++ .|-|+|.
T Consensus 58 vC~~flkG~C~r~-~C~y~H~ 77 (98)
T 2e5s_A 58 VCMDYIKGRCMRE-KCKYFHP 77 (98)
T ss_dssp BCHHHHHTCCCCT-TCCSBCC
T ss_pred cchhhccCCCCCC-CcCccCC
Confidence 3444444555544 4555544
No 241
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=43.38 E-value=69 Score=26.74 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=26.9
Q ss_pred HHHHHHH--hcCCCeeEEEEecCCCCCceeEEEEEECCHHHH
Q 045807 83 EDLFEEL--SKYGEIESLNICDNLADHMVGNVYVQFREEEHA 122 (320)
Q Consensus 83 edL~~~F--~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A 122 (320)
..|.+.| ..|.++.-..+... . -..|+|.|+|..--..
T Consensus 36 ~~l~~~~~~~~F~p~kv~~l~~~-~-Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 36 SKLRDEYILRGFNPTRVRPLWNY-L-GHSGTAIVEFNKDWNG 75 (172)
T ss_dssp HHHHHHHHHTTCCCSEEEEEECS-S-BEEEEEEEECCSSHHH
T ss_pred HHHHHHHHhcCCCCceeEecccC-C-CCceeEEEEecCChHH
Confidence 6788877 89999875444332 2 3569999999986543
No 242
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=41.99 E-value=7.9 Score=28.91 Aligned_cols=25 Identities=28% Similarity=0.640 Sum_probs=21.4
Q ss_pred ccccCceeccCCCCCC-ccccCCCCCC
Q 045807 16 VNCPFYFKIGACRHGD-RCSRLHTKPS 41 (320)
Q Consensus 16 ~~c~f~~k~g~cr~g~-~cs~~h~~p~ 41 (320)
..|..|.. |.|..|+ .|.+.|....
T Consensus 18 ~VCrdFlr-G~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 18 EVCRQFQR-GTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp CBCHHHHH-TCCCCCTTTSSSBCCCSS
T ss_pred hhchHHhc-CCCCCCCCCCCCcCCCcc
Confidence 46888887 9999998 9999998764
No 243
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=34.76 E-value=17 Score=31.83 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.4
Q ss_pred CccccCceec----cCCCCCCccccCCCCC
Q 045807 15 RVNCPFYFKI----GACRHGDRCSRLHTKP 40 (320)
Q Consensus 15 ~~~c~f~~k~----g~cr~g~~cs~~h~~p 40 (320)
+-.|.+| |- |.|.+++.|.++|+=.
T Consensus 151 PeiC~~Y-kG~g~~g~C~~~~~C~kLHIC~ 179 (229)
T 3u9g_A 151 PEICKSY-KGEGRKQTCGQPQPCERLHICE 179 (229)
T ss_dssp CCBCTTC-CCSSSCCSCSSSSCCCSBCSCH
T ss_pred chHHHHh-CCCCCCCcCCCCCCCcceeccc
Confidence 7789999 73 6899999999999854
No 244
>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A
Probab=32.01 E-value=1.8e+02 Score=22.51 Aligned_cols=52 Identities=8% Similarity=0.043 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHH
Q 045807 75 QDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANAL 126 (320)
Q Consensus 75 ~~~~~~~eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~ 126 (320)
++.|++....+...+.+.==.....|.....+...=+.+.++++.++-++..
T Consensus 36 ~~~f~~~~~~~~~~~~~~pGfi~~~L~r~~~~p~~yv~~~~W~s~ea~~a~~ 87 (128)
T 3kg0_A 36 PAEFESVFARTAAFFARQPGFVRHTLLRERDKDNSYVNIAVWTDHDAFRRAL 87 (128)
T ss_dssp HHHHHHHHHHHHHHHHTSTTEEEEEEEECTTCSSEEEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEEEcCCCCCEEEEEEEECCHHHHHHHH
Confidence 4556666666666666543344455555433323334556666766555443
No 245
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=30.48 E-value=1.3e+02 Score=23.40 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=31.1
Q ss_pred HhhhHHHHHHHHHHHHhc----------CCCeeEEEEecCCCCCceeEEEEE-ECCHHHHHHHHHHhC
Q 045807 74 IQDHFEDFYEDLFEELSK----------YGEIESLNICDNLADHMVGNVYVQ-FREEEHAANALRNLN 130 (320)
Q Consensus 74 i~~~~~~~eedL~~~F~k----------~G~I~~v~i~~~~tg~~~G~afV~-F~~~e~A~~A~~~ln 130 (320)
.+..-+.|..+|-+++.. +=.|..|.|-.. -....+||. |-+.++.+.++++|+
T Consensus 15 ~~Rv~~~i~~~ls~il~~~~~dp~l~~~~vtVt~V~vS~D---l~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 15 LRALNGLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPD---FSACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTCHHHHHHTCCEEEEEECTT---SCCEEEEECCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCccccCCeeEEEEEEECCC---CcEEEEEEEecCChhhHHHHHHHHH
Confidence 334445555666666553 457778877543 234678887 666655454555454
No 246
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=30.42 E-value=11 Score=24.32 Aligned_cols=23 Identities=26% Similarity=0.681 Sum_probs=17.3
Q ss_pred CCccccCceeccCCCCCCccccC
Q 045807 14 DRVNCPFYFKIGACRHGDRCSRL 36 (320)
Q Consensus 14 ~~~~c~f~~k~g~cr~g~~cs~~ 36 (320)
+--|||||....-=++-.+|.-.
T Consensus 15 eTPnCpF~mSVnTQP~CHEC~er 37 (49)
T 2eqg_A 15 ETPNCPFFMSVNTQPLCHECSER 37 (49)
T ss_dssp SSTTCCSBCCTTTTTSCHHHHHH
T ss_pred cCCCCCeEEEecCccchHHHHHH
Confidence 35699999988777777777643
No 247
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=29.35 E-value=83 Score=25.14 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=27.6
Q ss_pred eeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCc
Q 045807 95 IESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGR 132 (320)
Q Consensus 95 I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~ 132 (320)
|..|.++. ...||+||++....+...++..+.|.
T Consensus 33 i~~v~vp~----~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPS----RVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECT----TCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeec----CCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 77777764 24699999999999888898888874
No 248
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=27.98 E-value=2.3e+02 Score=22.69 Aligned_cols=56 Identities=11% Similarity=0.262 Sum_probs=40.5
Q ss_pred HhhhHHHHHHHHHHHHhcCCCeeEEEEe--c-C---CC----------CCceeEEEEEECCHHHHHHHHHHh
Q 045807 74 IQDHFEDFYEDLFEELSKYGEIESLNIC--D-N---LA----------DHMVGNVYVQFREEEHAANALRNL 129 (320)
Q Consensus 74 i~~~~~~~eedL~~~F~k~G~I~~v~i~--~-~---~t----------g~~~G~afV~F~~~e~A~~A~~~l 129 (320)
-.+-|.+.-+...++|..||.+.-|... . + .| +...-|.+|+|.+.+...+|..++
T Consensus 39 nkeaY~~~A~~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~kv 110 (141)
T 2okq_A 39 KKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKM 110 (141)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 3466888888899999999987655432 2 1 12 344569999999999888877543
No 249
>2okv_A Probable D-tyrosyl-tRNA(Tyr) deacylase 1; DNA replication, DUE, ATPase, tRNA deacylase, hydrolase; 2.00A {Homo sapiens}
Probab=27.12 E-value=1.6e+02 Score=25.30 Aligned_cols=48 Identities=19% Similarity=0.419 Sum_probs=36.7
Q ss_pred CCCCChhhHhhhHHHHHHHHHHHH-------hcCCCeeEEEEecCCCCCceeEEEEEECCH
Q 045807 66 GQALDPRKIQDHFEDFYEDLFEEL-------SKYGEIESLNICDNLADHMVGNVYVQFREE 119 (320)
Q Consensus 66 ~~~~d~~~i~~~~~~~eedL~~~F-------~k~G~I~~v~i~~~~tg~~~G~afV~F~~~ 119 (320)
...+.++....+|+.|.+.|+... ..||.-..|.|+.. |=+-|.+++.
T Consensus 94 ~~Aa~pe~A~~LYe~Fv~~lr~~~~~~~V~tG~FGA~M~V~LvND------GPVTi~lds~ 148 (209)
T 2okv_A 94 HLAMPTEQAEGFYNSFLEQLRKTYRPELIKDGKFGAYMQVHIQND------GPVTIELESP 148 (209)
T ss_dssp TTBCCHHHHHHHHHHHHHHHHHHSCGGGEEECCTTSCEEEEEEEE------EEEEEEEECC
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCCCCccEeCcccCCcEEEEEeC------CCEEEEEECC
Confidence 345678888999999999998875 37999999988753 6666666653
No 250
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=26.51 E-value=9 Score=31.25 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEEC
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFR 117 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~ 117 (320)
+|+.++|...|.|+.... .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~-------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV-------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET-------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC-------CCCeeEEeeC
Confidence 456677888888876644 2589999965
No 251
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=25.69 E-value=80 Score=23.27 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=19.9
Q ss_pred CeeEEEEec-CCCCCceeEEEEEECC
Q 045807 94 EIESLNICD-NLADHMVGNVYVQFRE 118 (320)
Q Consensus 94 ~I~~v~i~~-~~tg~~~G~afV~F~~ 118 (320)
+|+.|.|.. ...++.+|||-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 578888865 4567899999999974
No 252
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=22.11 E-value=82 Score=31.64 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=34.4
Q ss_pred HHHHHHh----cCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhC
Q 045807 84 DLFEELS----KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLN 130 (320)
Q Consensus 84 dL~~~F~----k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~ln 130 (320)
||..+|- .+|-|+.+.|.--.-.....+++|.|.+.++|..|+..+-
T Consensus 359 DL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 359 DIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 5666662 6899999988531122346788999999999999887663
No 253
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=21.78 E-value=1e+02 Score=23.33 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=19.7
Q ss_pred CeeEEEEec-CCCCCceeEEEEEECC
Q 045807 94 EIESLNICD-NLADHMVGNVYVQFRE 118 (320)
Q Consensus 94 ~I~~v~i~~-~~tg~~~G~afV~F~~ 118 (320)
+|+.|.|.. ...++.+|||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 578888865 4458899999999974
No 254
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=21.70 E-value=1.2e+02 Score=27.83 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHH
Q 045807 82 YEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALR 127 (320)
Q Consensus 82 eedL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~ 127 (320)
...+.++..+||+|..+.+. +.-+|...+.+.+..++.
T Consensus 33 ~~~~~~~~~~yG~v~~~~~g--------~~~~vvv~~~~~v~~il~ 70 (476)
T 3e6i_A 33 PKSFTRLAQRFGPVFTLYVG--------SQRMVVMHGYKAVKEALL 70 (476)
T ss_dssp HHHHHHHHHHHCSEEEEEET--------TEEEEEECSHHHHHHHHH
T ss_pred hHHHHHHHHHhCCEEEEEEC--------CccEEEECCHHHHHHHHh
Confidence 35577778899999888762 355677888998888876
No 255
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.67 E-value=1e+02 Score=23.51 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=19.6
Q ss_pred CeeEEEEec-CCCCCceeEEEEEECC
Q 045807 94 EIESLNICD-NLADHMVGNVYVQFRE 118 (320)
Q Consensus 94 ~I~~v~i~~-~~tg~~~G~afV~F~~ 118 (320)
+|+.|.|.. ...++.+|||-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 577788754 4568899999999974
No 256
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=21.38 E-value=54 Score=31.85 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=28.5
Q ss_pred HHHHH--hcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHH
Q 045807 85 LFEEL--SKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALR 127 (320)
Q Consensus 85 L~~~F--~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~ 127 (320)
|..+| +.+|-|+.+.+...........+++.|.+.++|..|+.
T Consensus 218 l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 218 LDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp CHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHH
T ss_pred hhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHH
Confidence 45556 36999999988542222345678899999777666443
No 257
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=20.64 E-value=2.7e+02 Score=21.46 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=13.0
Q ss_pred HHHHHHhhCCCCCCccccCce
Q 045807 2 AEHLASIFGTEKDRVNCPFYF 22 (320)
Q Consensus 2 ~~~~~~~~~~~~~~~~c~f~~ 22 (320)
|+.|..++|+....--..|..
T Consensus 51 A~lls~Llg~~ip~NR~~i~~ 71 (114)
T 2x4i_A 51 IQLINSLCGTTFQKNRVEIKL 71 (114)
T ss_dssp HHHHHHHHCCCCCCCCCCCCB
T ss_pred HHHHHHHhCCCccccceeEEe
Confidence 677888888775533334443
No 258
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=20.35 E-value=82 Score=29.37 Aligned_cols=48 Identities=27% Similarity=0.455 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeeE
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPI 139 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~lnG~~~~Gr~I 139 (320)
..+.++..+||+|..+++. +.-+|...+++.|..++.. ++..|.+++.
T Consensus 33 ~~~~~~~~kYG~i~~~~~g--------~~~~vvv~~p~~~k~il~~-~~~~f~~rp~ 80 (494)
T 3swz_A 33 NNFFKLQKKYGPIYSVRMG--------TKTTVIVGHHQLAKEVLIK-KGKDFSGRPQ 80 (494)
T ss_dssp HHHHHTHHHHCSEEEEEET--------TEEEEEECSHHHHHHHHTT-TTTTTBBCCC
T ss_pred HHHHHHHHHcCCEEEEEeC--------CCCEEEECCHHHHHHHHHh-CcHhhCCCCC
Confidence 4566677899999988873 2445667788888877753 4455555543
No 259
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=20.03 E-value=2.8e+02 Score=20.66 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCceeEEEEEECCHHHHHHHHHHhC
Q 045807 83 EDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLN 130 (320)
Q Consensus 83 edL~~~F~k~G~I~~v~i~~~~tg~~~G~afV~F~~~e~A~~A~~~ln 130 (320)
.++--.....|---.|..+. |.|.|.|.+..+-.-|++.|-
T Consensus 27 aevvlavrhlgyefycdyid-------gqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 27 AEVVLAVRHLGYEFYCDYID-------GQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp HHHHHHHHTTCCCEEEEECS-------SCEEEEESSHHHHHHHHHHHE
T ss_pred eeeEEeehhcCeeEeeeeec-------CeeEEEecCChHHHHHHHHHH
Confidence 44444455667767777665 889999999999989998773
Done!