Query 045809
Match_columns 549
No_of_seqs 247 out of 1658
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 09:39:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pjz_A Potassium uptake protei 100.0 1.1E-57 3.9E-62 493.4 29.5 383 42-547 71-484 (494)
2 3pjz_A Potassium uptake protei 99.7 1.3E-17 4.3E-22 180.6 14.5 275 209-543 71-355 (494)
3 3ukm_A Potassium channel subfa 91.1 0.65 2.2E-05 46.3 8.8 137 372-533 93-246 (280)
4 3um7_A Potassium channel subfa 89.5 3.7 0.00013 41.4 12.9 39 247-291 115-153 (309)
5 3ukm_A Potassium channel subfa 89.2 3.3 0.00011 41.2 12.0 39 247-291 93-131 (280)
6 3vou_A ION transport 2 domain 88.4 2 6.7E-05 38.3 9.0 74 37-119 23-96 (148)
7 3um7_A Potassium channel subfa 88.1 1.1 3.7E-05 45.3 7.8 136 372-533 115-268 (309)
8 2k1e_A Water soluble analogue 87.4 1.1 3.9E-05 37.3 6.4 75 44-121 11-85 (103)
9 3ouf_A Potassium channel prote 86.0 3.1 0.0001 34.3 8.2 41 473-534 31-71 (97)
10 2q67_A Potassium channel prote 83.0 4.9 0.00017 34.1 8.4 71 39-119 22-92 (114)
11 2ih3_C Voltage-gated potassium 82.5 5.7 0.0002 34.1 8.7 66 341-412 34-100 (122)
12 3eff_K Voltage-gated potassium 82.1 2.8 9.6E-05 36.7 6.7 81 42-125 9-89 (139)
13 3eff_K Voltage-gated potassium 81.5 5.3 0.00018 34.9 8.3 60 452-534 20-79 (139)
14 2a9h_A Voltage-gated potassium 81.4 5.8 0.0002 35.7 8.7 67 340-412 56-123 (155)
15 2ih3_C Voltage-gated potassium 79.9 9.9 0.00034 32.5 9.3 59 453-534 42-100 (122)
16 3ldc_A Calcium-gated potassium 79.6 7.7 0.00026 30.7 8.0 55 450-534 13-67 (82)
17 2q67_A Potassium channel prote 79.3 7.6 0.00026 32.9 8.3 41 473-534 48-88 (114)
18 3ouf_A Potassium channel prote 77.1 4.8 0.00016 33.1 6.2 72 38-119 4-75 (97)
19 3ldc_A Calcium-gated potassium 76.3 8.7 0.0003 30.4 7.3 58 342-412 9-67 (82)
20 2a9h_A Voltage-gated potassium 75.7 5.8 0.0002 35.7 6.9 73 47-121 58-130 (155)
21 2k1e_A Water soluble analogue 75.3 5 0.00017 33.3 5.9 61 451-534 19-79 (103)
22 3vou_A ION transport 2 domain 75.0 9.4 0.00032 33.7 8.0 41 473-534 51-91 (148)
23 4h33_A LMO2059 protein; bilaye 68.9 10 0.00035 33.1 6.7 76 38-121 13-88 (137)
24 4h33_A LMO2059 protein; bilaye 68.4 15 0.00051 32.1 7.6 41 473-534 42-82 (137)
25 1p7b_A Integral membrane chann 65.2 25 0.00087 35.6 9.6 74 45-121 68-141 (333)
26 1orq_C Potassium channel; volt 59.5 32 0.0011 32.0 8.7 70 48-120 140-209 (223)
27 1orq_C Potassium channel; volt 57.0 34 0.0012 31.8 8.4 65 342-412 139-204 (223)
28 1xl4_A Inward rectifier potass 54.9 26 0.0009 34.9 7.5 48 71-121 80-127 (301)
29 3beh_A MLL3241 protein; transm 46.9 18 0.00061 36.4 4.9 73 45-120 133-205 (355)
30 1xl4_A Inward rectifier potass 41.3 86 0.0029 31.1 8.8 41 473-534 81-121 (301)
31 4gx0_A TRKA domain protein; me 39.2 46 0.0016 35.6 7.0 39 367-411 50-89 (565)
32 4gx0_A TRKA domain protein; me 35.0 22 0.00074 38.3 3.4 66 46-114 25-90 (565)
33 3spc_A Inward-rectifier K+ cha 33.4 2E+02 0.0068 29.1 10.1 52 246-301 93-144 (343)
34 3beh_A MLL3241 protein; transm 31.4 68 0.0023 32.0 6.3 63 344-412 137-200 (355)
35 2qks_A KIR3.1-prokaryotic KIR 30.9 1.7E+02 0.0059 29.1 9.1 40 474-534 78-117 (321)
36 3sya_A G protein-activated inw 30.8 1.5E+02 0.005 30.0 8.6 52 246-301 90-141 (340)
37 3sya_A G protein-activated inw 26.2 86 0.0029 31.7 5.9 54 72-125 90-143 (340)
38 1lnq_A MTHK channels, potassiu 24.1 4.2 0.00014 40.8 -4.4 66 46-121 25-90 (336)
39 1p7b_A Integral membrane chann 23.6 1.5E+02 0.0051 29.8 7.1 41 473-534 95-135 (333)
40 2qks_A KIR3.1-prokaryotic KIR 22.5 2.4E+02 0.0083 28.0 8.4 47 72-121 77-123 (321)
41 3spc_A Inward-rectifier K+ cha 22.5 79 0.0027 32.0 4.8 53 72-125 93-146 (343)
No 1
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.1e-57 Score=493.42 Aligned_cols=383 Identities=15% Similarity=0.132 Sum_probs=281.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccchhheecccccccccceee-CCccChHHHHHHHHHHHHhhhHHHHH
Q 045809 42 WIQLSYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVE-MEVFSNFQLIIMTILMFVGGEVFISM 120 (549)
Q Consensus 42 ~i~~~~f~~i~~iG~~lL~l~~~~~~~~~~~s~~DAlF~avSAvt~TGLs~vd-~~~~s~~gq~vl~~LiqiGGlg~~s~ 120 (549)
.+..+.|++++++|++++++. . ..+++|+||+|||+||+|+||++++| .|+.+..-....-+++|+||+|++++
T Consensus 71 ~~v~l~W~~~~~~galPf~~~-~----~~~~s~~dA~Fes~Sg~TtTG~tv~~~~~~lp~~~l~wr~~l~wlGGlGiivl 145 (494)
T 3pjz_A 71 LIVVLFWTVLGSAGSLPFLIA-D----NPNISVTDAFFESFSALTTTGATVIVGLDELPKAILFYRQFLQWFGGMGIIVL 145 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-C----SSCCCHHHHHHHHHHHHTTCCCCCCCCCSSSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc-C----CCCCcHHHHHHHHHHHhhcCCeEEecChhhccchHHHHHHHHHHHhhHHHHHH
Confidence 566789999999999999972 1 12478999999999999999999998 47655433333337999999999999
Q ss_pred HHHHH-hhccchhhhhhhcccCCCCCCCCCCCCCCCCCCCCcccccchhhcccccccccCCCCCCCcccccccCCCCccc
Q 045809 121 FGLHA-RSKFYSLNQLFENRINPNLTPSSSSSSSSSSSENSTEFTDQIELGIVSHSYITNEEPNNGLENEHRMSSNDDNL 199 (549)
Q Consensus 121 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 199 (549)
...++ ..+.+.++... +|. +.|.+ + +++
T Consensus 146 a~ail~~lg~~~~~l~~-----ae~--------------~g~~~----------------~---------------~k~- 174 (494)
T 3pjz_A 146 AVAILPVLGIGGMQLYR-----AEI--------------PGPVK----------------D---------------TKM- 174 (494)
T ss_dssp TTSSTTTTSCCCC-------------------------------------------------------------------
T ss_pred HHHHHHHcCCchhhhHH-----Hhc--------------cCCcc----------------c---------------ccc-
Confidence 87766 33322222211 110 00000 0 111
Q ss_pred ccCchHhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhccchhHHHHHHHhhhcccCccccccCCcccccccChh
Q 045809 200 KYNSVRVLVYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQKGLQIFTFSVFTTASTFSNCGFVPTNENMMVFKKNAL 279 (549)
Q Consensus 200 ~~~~~~~l~~~i~~~~~~i~~iGallL~l~~~~~~~~~~~~~~~~~~~~~~AiF~avSAf~naGFs~~~~sl~~y~~~~~ 279 (549)
...++...|.++.+|+.++++++++++ .. + +++|||+|||+||+||||||+.|+|+.+| +|+.
T Consensus 175 -~p~i~~ta~~l~~iy~~lt~~~~l~l~--~~---G----------m~~fdAi~Ha~Sa~~tgGFs~~~~Si~~~-~s~~ 237 (494)
T 3pjz_A 175 -TPRIAETAKALWYIYLSLTIACAVAFW--LA---G----------MTPFDAISHSFSTIAIGGFSTHDASMGYF-DSYA 237 (494)
T ss_dssp -CSSSHHHHHHHHHHHHHHHHHHHHHHH--HH---T----------CCSHHHHTTTHHHHTTCCCCSSTTGGGSS-CCTT
T ss_pred -CccHHHHHHHHHHHHHHHHHHHHHHHH--Hc---C----------CcHHHHHHHHHHHHhCCCCCCccchhhhh-cCHH
Confidence 223345567777888899988766643 21 2 67999999999999999999999999888 6899
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHhcchhhHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045809 280 LLLILFPQGLLGNTLYPSCLRFVIWVLKKITNREEFDYILRNSKEMIYRHLLSKAYSYFLAITVFGFIFVQLVLFCALEW 359 (549)
Q Consensus 280 v~~vi~~liilGGlgF~v~~~~i~~~~~r~~~~~~~~~ll~~~r~~~~~~l~~s~~tk~vl~~~~~l~~ig~il~~l~e~ 359 (549)
++++++++|++||+||++++++. . + ++++ +++++++.|+|+++.+++++.+++++.++..|.
T Consensus 238 i~~vi~~~milggl~F~v~~~~~--~--~--~~~~------------~~~~~~~~e~r~~l~~~~~~~~~~~~~l~~~~~ 299 (494)
T 3pjz_A 238 INLITVVFLLISACNFTLHFAAF--A--S--GGVH------------PKYYWKDPEFRAFIFIQVLLFLVCFLLLLKHHS 299 (494)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHT--T--T--STTC------------HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHH--h--c--ccch------------hhHHhCCcHHHhhHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999998852 1 0 0001 122233678898888777666666554443221
Q ss_pred ccccCCCCCHHHHHHHHHHHHhccCCc-ccccccCCCchhHHHHHHHHHHhcCC---cceEE---------------ecc
Q 045809 360 DSEATDGLNFFEKLVASLFQVVNSRHT-GESVFDISIISPAILVLFVVMMYLPP---YTSFW---------------PSR 420 (549)
Q Consensus 360 ~~~~~~~~~~~~~l~~slFqsvSarTA-GFst~d~~~~s~~~~~lliiLMfIGg---stt~~---------------~~r 420 (549)
+ .++.+++++++||++|+||+ ||++.|+++|++.++++++++||||| ||+.. .+|
T Consensus 300 ----~--~~~~~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~~GSTaGGIKv~r~~il~~~~~~el~ 373 (494)
T 3pjz_A 300 ----Y--TSPYDAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGCAGSTGGGMKVIRILLLTLQGARELK 373 (494)
T ss_dssp ----C--SSHHHHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSCTTSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred ----c--CCHHHHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCCcccCCCchhHHHHHHHHHHHHHHHh
Confidence 1 16899999999999999765 99999999999999999999999987 55421 123
Q ss_pred ccccc-----cccccCcccchhHHHHHHHHHHHHHHHH--HHHHHHHHcCCCCCCCCCcccHHHHHHHHhhcccCccCCC
Q 045809 421 NREGD-----SRNFKEKKNKKKTFVQNFIFSQLSYLVI--FIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFST 493 (549)
Q Consensus 421 ~~~~~-----~~~~~~r~i~~~~~~~a~~~~~l~~~~~--~~~~l~~~e~~~~~~~~~~~~~~~~lFEvvSA~gtvGlS~ 493 (549)
+..+. .++ ++|+++++.++++..++.++.+.+ +++++...+ .|+.+++||++||++|||+|+
T Consensus 374 ~~~~P~~v~~v~~-~~r~i~~~~v~~~~~~~~ly~~~~~~~~~~l~~~g----------~~~~~a~~~v~Sal~nvG~s~ 442 (494)
T 3pjz_A 374 RLVHPRAVYTIKV-GGSALPQRVVDAVWGFFSAYALVFVVCMLGLIATG----------MDELSAFSAVAATLNNLGPGL 442 (494)
T ss_dssp HHHCSSSCCCCCS-SSCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS----------SCHHHHHHHHHHHTTTCCSCC
T ss_pred cccCCCcceeeeE-CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHcCCCCcc
Confidence 32111 134 889999999999988877776543 344444443 689999999999999999999
Q ss_pred CccCcccCCCCCCCCCcccccccccChhhHHHHHHHHHhccCCcccc---CCCcccc
Q 045809 494 GYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGRIKKFNM---KGGKAWQ 547 (549)
Q Consensus 494 G~~~~~~~~~~~~~~~~~~s~t~~l~~~~Klili~lM~iGRl~~~t~---~gg~~~~ 547 (549)
|.. +| +| +++|+.+|++++++|++||+|++|+ ..+++||
T Consensus 443 G~v-----g~-------~~---~~L~~~~K~vl~~~M~~GRLei~tvl~l~~p~fWr 484 (494)
T 3pjz_A 443 GEV-----AL-------HF---GDVNDKAKWVLIVSMLFGRLEIFTLLILLTPTFWR 484 (494)
T ss_dssp SSS-----CC-------CC---SSSCHHHHHHHHHHHHHHHTTTHHHHTTSCSTTCC
T ss_pred ccc-----CC-------Cc---ccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 974 22 34 5999999999999999999999997 7899997
No 2
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=99.73 E-value=1.3e-17 Score=180.59 Aligned_cols=275 Identities=16% Similarity=0.135 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhccchhHHHHHHHhhhcccCccccccCCcccccccChhHHHHHHHHH
Q 045809 209 YVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQKGLQIFTFSVFTTASTFSNCGFVPTNENMMVFKKNALLLLILFPQG 288 (549)
Q Consensus 209 ~~i~~~~~~i~~iGallL~l~~~~~~~~~~~~~~~~~~~~~~AiF~avSAf~naGFs~~~~sl~~y~~~~~v~~vi~~li 288 (549)
.++....+++-++|++-+++ . .+ ...++.||+|.|+||+|++|.++.|+ .+.. ....+.-=.++.
T Consensus 71 ~~v~l~W~~~~~~galPf~~--~--~~--------~~~s~~dA~Fes~Sg~TtTG~tv~~~-~~~l--p~~~l~wr~~l~ 135 (494)
T 3pjz_A 71 LIVVLFWTVLGSAGSLPFLI--A--DN--------PNISVTDAFFESFSALTTTGATVIVG-LDEL--PKAILFYRQFLQ 135 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--C--CS--------SCCCHHHHHHHHHHHHTTCCCCCCCC-CSSS--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh--c--CC--------CCCcHHHHHHHHHHHhhcCCeEEecC-hhhc--cchHHHHHHHHH
Confidence 44556667777778776432 1 10 01479999999999999999999986 2211 233444444789
Q ss_pred HHhcccHHHHHHHHHHHHHhhcchhhhHHHHhcchhhHHhhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 045809 289 LLGNTLYPSCLRFVIWVLKKITNREEFDYILRNSKEMIYRHLLS--KAYSYFLAITVFGFIFVQLVLFCALEWDSEATDG 366 (549)
Q Consensus 289 ilGGlgF~v~~~~i~~~~~r~~~~~~~~~ll~~~r~~~~~~l~~--s~~tk~vl~~~~~l~~ig~il~~l~e~~~~~~~~ 366 (549)
++||+|+.++.-.+.-..+. -+.+-.+...-.|.+ ..+..| ....|.+..+++.+.+++++++++ .+
T Consensus 136 wlGGlGiivla~ail~~lg~-~~~~l~~ae~~g~~~--~~k~~p~i~~ta~~l~~iy~~lt~~~~l~l~~--------~G 204 (494)
T 3pjz_A 136 WFGGMGIIVLAVAILPVLGI-GGMQLYRAEIPGPVK--DTKMTPRIAETAKALWYIYLSLTIACAVAFWL--------AG 204 (494)
T ss_dssp HHHHHHHHTTTTSSTTTTSC-CCC------------------CSSSHHHHHHHHHHHHHHHHHHHHHHHH--------HT
T ss_pred HHhhHHHHHHHHHHHHHcCC-chhhhHHHhccCCcc--ccccCccHHHHHHHHHHHHHHHHHHHHHHHHH--------cC
Confidence 99999998875432111110 000101000000000 001111 345677777777777777665543 23
Q ss_pred CCHHHHHHHHHHHHhcc-CCcccccccC--CCc-hhHHHHHHHHHHhcCC--cceEEe-ccccc-cccccccCcccchhH
Q 045809 367 LNFFEKLVASLFQVVNS-RHTGESVFDI--SII-SPAILVLFVVMMYLPP--YTSFWP-SRNRE-GDSRNFKEKKNKKKT 438 (549)
Q Consensus 367 ~~~~~~l~~slFqsvSa-rTAGFst~d~--~~~-s~~~~~lliiLMfIGg--stt~~~-~r~~~-~~~~~~~~r~i~~~~ 438 (549)
++ +++|+||++|+ +|+||++.|- ..+ ++...++.+++|++|| .+.+.. +|+++ +. |+..++.
T Consensus 205 m~----~fdAi~Ha~Sa~~tgGFs~~~~Si~~~~s~~i~~vi~~~milggl~F~v~~~~~~~~~~~~------~~~~~~~ 274 (494)
T 3pjz_A 205 MT----PFDAISHSFSTIAIGGFSTHDASMGYFDSYAINLITVVFLLISACNFTLHFAAFASGGVHP------KYYWKDP 274 (494)
T ss_dssp CC----SHHHHTTTHHHHTTCCCCSSTTGGGSSCCTTHHHHHHHHHHHHTSCHHHHHHHTTTSTTCH------HHHHTSH
T ss_pred Cc----HHHHHHHHHHHHhCCCCCCccchhhhhcCHHHHHHHHHHHHHHhccHHHHHHHHhcccchh------hHHhCCc
Confidence 44 46799999999 9999999984 344 4677899999999998 222111 23221 10 1111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccHHHHHHHHhhcccCccCCCCccCcccCCCCCCCCCccccccccc
Q 045809 439 FVQNFIFSQLSYLVIFIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRW 518 (549)
Q Consensus 439 ~~~a~~~~~l~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~lFEvvSA~gtvGlS~G~~~~~~~~~~~~~~~~~~s~t~~l 518 (549)
..|.+....+...++.++.+...|. .++....+.+++|+++|+..|.|+++-+ -++|
T Consensus 275 e~r~~l~~~~~~~~~~~~~l~~~~~----~~~~~~~l~~a~Fq~vS~~TttGF~t~d-------------------~~~w 331 (494)
T 3pjz_A 275 EFRAFIFIQVLLFLVCFLLLLKHHS----YTSPYDAFDQALFQTVSISTTAGFTTTG-------------------FADW 331 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----CSSHHHHHHHHHHHHHHTTTTCCCCSCC-------------------CSSC
T ss_pred HHHhhHHHHHHHHHHHHHHHHHccc----cCCHHHHHHHHHHheeecccCCcccccC-------------------hHhC
Confidence 2333333322222222222322231 1122346889999999999888998865 2489
Q ss_pred ChhhHHHHHHHHHhccCCccccCCC
Q 045809 519 SNQGKVILILVMFFGRIKKFNMKGG 543 (549)
Q Consensus 519 ~~~~Klili~lM~iGRl~~~t~~gg 543 (549)
++.+|++++++||+|. ++.+++||
T Consensus 332 ~~~~~~ll~~LMfIGG-~~GSTaGG 355 (494)
T 3pjz_A 332 PLFLPVLLLFSSFIGG-CAGSTGGG 355 (494)
T ss_dssp CTHHHHHHHHHTTSCS-CTTSSCCS
T ss_pred CHHHHHHHHHHHHHcC-CcccCCCc
Confidence 9999999999999999 88999887
No 3
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=91.13 E-value=0.65 Score=46.28 Aligned_cols=137 Identities=12% Similarity=0.137 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcc-CCcccccccCCCchhHHHHHHHHHHhcCCcceEE----------eccccccccccccCc-ccchhH-
Q 045809 372 KLVASLFQVVNS-RHTGESVFDISIISPAILVLFVVMMYLPPYTSFW----------PSRNREGDSRNFKEK-KNKKKT- 438 (549)
Q Consensus 372 ~l~~slFqsvSa-rTAGFst~d~~~~s~~~~~lliiLMfIGgstt~~----------~~r~~~~~~~~~~~r-~i~~~~- 438 (549)
.+.+|++-++++ .|.|| .|+...++..+++.++.+++|-..... ....++..... ++| ..+++.
T Consensus 93 ~~~~a~yf~~~t~tTvGy--Gd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 169 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGY--GHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYF-HIRWGFSKQVV 169 (280)
T ss_dssp SHHHHHHHHHHHHTTCCC--CSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTC-------CCHHH
T ss_pred Chhcchhheeeeeecccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCChhHH
Confidence 356677777777 89997 477778899999999998887521100 00000101001 111 111111
Q ss_pred -HHHHHHHH---HHHHHHHHHHHHHHHcCCCCCCCCCcccHHHHHHHHhhcccCccCCCCccCcccCCCCCCCCCccccc
Q 045809 439 -FVQNFIFS---QLSYLVIFIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGF 514 (549)
Q Consensus 439 -~~~a~~~~---~l~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~lFEvvSA~gtvGlS~G~~~~~~~~~~~~~~~~~~s~ 514 (549)
..+...+. .+.+++++...+...|++ .++.|+++=++-.+.|||++--. |..+-+
T Consensus 170 ~~~~~~~l~~~~~~~~~~~ga~~~~~~E~~--------~s~~da~y~~~iTltTvGyGD~~------------p~t~~~- 228 (280)
T 3ukm_A 170 AIVHAVLLGFVTVSCFFFIPAAVFSVLEDD--------WNFLESFYFCFISLSTIGLGDYV------------PGEGYN- 228 (280)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHSSS--------CCHHHHHHHHHHHHTTCCCCSCC------------SSCSSS-
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhcC--------CchhhhhhheeeeeecccCCCCC------------CCCCcc-
Confidence 11111111 111222344444455521 67899999999999999964322 222211
Q ss_pred ccccChhhHHHHHHHHHhc
Q 045809 515 VGRWSNQGKVILILVMFFG 533 (549)
Q Consensus 515 t~~l~~~~Klili~lM~iG 533 (549)
...+..+|++.++.|++|
T Consensus 229 -~~~~~l~r~~~~~~il~G 246 (280)
T 3ukm_A 229 -QKFRELYKIGITCYLLLG 246 (280)
T ss_dssp -CTTHHHHHHHHHHHHHHH
T ss_pred -cccchhHHHHHHHHHHHH
Confidence 234457899999999887
No 4
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=89.55 E-value=3.7 Score=41.39 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=29.3
Q ss_pred hHHHHHHHhhhcccCccccccCCcccccccChhHHHHHHHHHHHh
Q 045809 247 IFTFSVFTTASTFSNCGFVPTNENMMVFKKNALLLLILFPQGLLG 291 (549)
Q Consensus 247 ~~~~AiF~avSAf~naGFs~~~~sl~~y~~~~~v~~vi~~liilG 291 (549)
++.+|++.++.+++|-|+. .+.| .+....+..++.+++|
T Consensus 115 ~~~~a~yf~~~t~tTvGYG----di~P--~T~~gk~~~i~~~l~G 153 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYG----NVAL--RTDAGRLFCIFYALVG 153 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCC----SSCC--CSHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccC----CCCC--CCccchhHHHHHHHHH
Confidence 6899999999999999983 2222 2467788877777765
No 5
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=89.18 E-value=3.3 Score=41.16 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=29.2
Q ss_pred hHHHHHHHhhhcccCccccccCCcccccccChhHHHHHHHHHHHh
Q 045809 247 IFTFSVFTTASTFSNCGFVPTNENMMVFKKNALLLLILFPQGLLG 291 (549)
Q Consensus 247 ~~~~AiF~avSAf~naGFs~~~~sl~~y~~~~~v~~vi~~liilG 291 (549)
++.+|++.++.+.+|-|+.- +.| .++...+..++.+++|
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd----~~P--~T~~Gk~f~~~~~l~G 131 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGH----TVP--LSDGGKAFCIIYSVIG 131 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCS----SCC--CSHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCC----cCC--CCchhHHHHHHHHHHH
Confidence 78999999999999999842 222 2466777777776664
No 6
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=88.42 E-value=2 Score=38.27 Aligned_cols=74 Identities=12% Similarity=0.219 Sum_probs=48.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccchhheecccccccccceeeCCccChHHHHHHHHHHHHhhhH
Q 045809 37 KVNPLWIQLSYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEV 116 (549)
Q Consensus 37 ~~~p~~i~~~~f~~i~~iG~~lL~l~~~~~~~~~~~s~~DAlF~avSAvt~TGLs~vd~~~~s~~gq~vl~~LiqiGGlg 116 (549)
+..+.......++++.+.|++..+. . ++.+|.||++-++-.+|+.|.- |...-+..++++..+.+.+|-..
T Consensus 23 ~~~~~~~~~~~~~~~~~~g~~~~~~-~------e~~~~~~a~y~~~~t~tTvGyG--d~~p~t~~~r~~~~~~~~~g~~~ 93 (148)
T 3vou_A 23 KDKEFQVLFVLTFLTLTSGTIFYST-V------EGLRPLDALYFSVVTLTTVGDG--NFSPQTDFGKVFTILYIFIGIGL 93 (148)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHH-T------SCCCHHHHHHHHHHHHTTCCCS--SCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-h------cCCCHHHHHHHHHHHHHccCCC--CCCCCCccHHHHHHHHHHHHHHH
Confidence 3345565566666666778777764 1 2368999999998888888854 33333567777776776655444
Q ss_pred HHH
Q 045809 117 FIS 119 (549)
Q Consensus 117 ~~s 119 (549)
+..
T Consensus 94 ~~~ 96 (148)
T 3vou_A 94 VFG 96 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 7
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=88.15 E-value=1.1 Score=45.30 Aligned_cols=136 Identities=13% Similarity=0.114 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcc-CCcccccccCCCchhHHHHHHHHHHhcCCcc-eEE----------eccc-cccccccccCcccchhH
Q 045809 372 KLVASLFQVVNS-RHTGESVFDISIISPAILVLFVVMMYLPPYT-SFW----------PSRN-REGDSRNFKEKKNKKKT 438 (549)
Q Consensus 372 ~l~~slFqsvSa-rTAGFst~d~~~~s~~~~~lliiLMfIGgst-t~~----------~~r~-~~~~~~~~~~r~i~~~~ 438 (549)
.+.+|++-++.+ .|-|| .|+...++..+++.++.+++|-.. .+. ..|. ..+..+...+++.+.+.
T Consensus 115 ~~~~a~yf~~~t~tTvGY--Gdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~le~~~~~~~~~~~~ 192 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGY--GNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPEL 192 (309)
T ss_dssp SHHHHHHHHHHHHTSCCC--CSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTC--CCH
T ss_pred ChhhhhHhhheeeeeccc--CCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccchhH
Confidence 356666666666 89998 477777889999999998887411 100 0111 00000000122222222
Q ss_pred HH--HHHHHHHH---HHHHHHHHHHHHHcCCCCCCCCCcccHHHHHHHHhhcccCccCCCCccCcccCCCCCCCCCcccc
Q 045809 439 FV--QNFIFSQL---SYLVIFIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYG 513 (549)
Q Consensus 439 ~~--~a~~~~~l---~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~lFEvvSA~gtvGlS~G~~~~~~~~~~~~~~~~~~s 513 (549)
.+ .......+ .+++++.+.+...|+ .++.|+++-++-.+.|||++--. |..+.
T Consensus 193 ~~~~~~~l~~~~~~~~~l~~ga~~~~~~E~---------~~~~da~y~~~vTltTvGyGd~~------------p~t~~- 250 (309)
T 3um7_A 193 VRVLSAMLFLLIGCLLFVLTPTFVFCYMED---------WSKLEAIYFVIVTLTTVGFGDYV------------AGADP- 250 (309)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHC---------CCHHHHHHHHHHHHTTCCCSSCC------------TTCCT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCHHHHHHHHHhheeccccCCCC------------CCCcc-
Confidence 21 11111111 122234444555563 67899999999999999964322 23332
Q ss_pred cccccChhhHHHHHHHHHhc
Q 045809 514 FVGRWSNQGKVILILVMFFG 533 (549)
Q Consensus 514 ~t~~l~~~~Klili~lM~iG 533 (549)
+...+.-|++.++.|+.|
T Consensus 251 --g~~~~~y~~~~~~~il~G 268 (309)
T 3um7_A 251 --RQDSPAYQPLVWFWILLG 268 (309)
T ss_dssp --TCCCSTHHHHHHHHHHHH
T ss_pred --ccccchHHHHHHHHHHHH
Confidence 244556778888888877
No 8
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=87.41 E-value=1.1 Score=37.31 Aligned_cols=75 Identities=8% Similarity=-0.066 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccchhheecccccccccceeeCCccChHHHHHHHHHHHHhhhHHHHHH
Q 045809 44 QLSYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISMF 121 (549)
Q Consensus 44 ~~~~f~~i~~iG~~lL~l~~~~~~~~~~~s~~DAlF~avSAvt~TGLs~vd~~~~s~~gq~vl~~LiqiGGlg~~s~~ 121 (549)
.+..++.+.++|+.+++......++....++.||++-++..+|+.|.- |...-+..++++..+.+.+ |+++..+.
T Consensus 11 ~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyG--Di~P~t~~gr~~~~~~~l~-G~~~~~~~ 85 (103)
T 2k1e_A 11 AEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYG--DRYPVTEEGRKVAEQVMKA-GIEVFALV 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCC--SSCCCSSSCTHHHHHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCC--CCCCCChhHHHHHHHHHHH-HHHHHHHH
Confidence 344555566888888886322211123358999999999999988864 3222234455555444444 44444333
No 9
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=85.97 E-value=3.1 Score=34.34 Aligned_cols=41 Identities=22% Similarity=0.395 Sum_probs=32.7
Q ss_pred ccHHHHHHHHhhcccCccCCCCccCcccCCCCCCCCCcccccccccChhhHHHHHHHHHhcc
Q 045809 473 FNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGR 534 (549)
Q Consensus 473 ~~~~~~lFEvvSA~gtvGlS~G~~~~~~~~~~~~~~~~~~s~t~~l~~~~Klili~lM~iGR 534 (549)
.++.++++-++..+.|||+ |+. . --++.+|++.++.|++|=
T Consensus 31 ~~~~~a~yf~~~T~tTvGy--Gdi-----~--------------P~t~~gr~~~~~~~~~G~ 71 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGY--GDF-----S--------------PQTDFGKIFTILYIFIGI 71 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCC--CSS-----C--------------CCSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCC--CCC-----C--------------CCCccHHHHHHHHHHHHH
Confidence 5789999999999999996 431 1 246789999999999873
No 10
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=82.97 E-value=4.9 Score=34.14 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccchhheecccccccccceeeCCccChHHHHHHHHHHHHhhhHHH
Q 045809 39 NPLWIQLSYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFI 118 (549)
Q Consensus 39 ~p~~i~~~~f~~i~~iG~~lL~l~~~~~~~~~~~s~~DAlF~avSAvt~TGLs~vd~~~~s~~gq~vl~~LiqiGGlg~~ 118 (549)
++.+......+.+.++|++..+. . ++.++.||++-++..+|+.|.- |...-+..++++..+.+.+| +++.
T Consensus 22 ~~~~~~~~~~~~~~~~g~~~~~~-~------e~~~~~~a~y~~~~T~tTvGyG--di~P~t~~gr~~~~~~~~~G-~~~~ 91 (114)
T 2q67_A 22 KEFQVLFVLTILTLISGTIFYST-V------EGLRPIDALYFSVVTLTTVGAG--NFSPQTDFGKIFTILYIFIG-IGLV 91 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-H------SCCCHHHHHHHHHHHHTSCCCS--SCCCCSHHHHHHHHHHHHHH-HHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-h------cCCCHHHHHHHHHHHhcceeCC--CCccCCHhHHHHHHHHHHHH-HHHH
Confidence 34455555555566778877764 1 2357999999999888888864 33333567777665555544 4443
Q ss_pred H
Q 045809 119 S 119 (549)
Q Consensus 119 s 119 (549)
.
T Consensus 92 ~ 92 (114)
T 2q67_A 92 F 92 (114)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=82.49 E-value=5.7 Score=34.06 Aligned_cols=66 Identities=11% Similarity=0.049 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHhcc-CCcccccccCCCchhHHHHHHHHHHhcCC
Q 045809 341 ITVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQVVNS-RHTGESVFDISIISPAILVLFVVMMYLPP 412 (549)
Q Consensus 341 ~~~~~l~~ig~il~~l~e~~~~~~~~~~~~~~l~~slFqsvSa-rTAGFst~d~~~~s~~~~~lliiLMfIGg 412 (549)
...+.+.++++.+++..|.+++.-...+ +.+|++-++.+ .|.||. |+...++..+++.++.|++|-
T Consensus 34 ~~~~~~~~~~a~~~~~~E~~~~~~~~~~----~~~a~y~~~~T~tTvGyG--Di~P~t~~gr~~~~~~~~~Gi 100 (122)
T 2ih3_C 34 VLLVIVLLAGSYLAVLAERGAPGAQLIT----YPRALWWACETATTVAYG--DLYPVTLWGRLVAVVVMVAGI 100 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCCCCS----HHHHHHHHHHHHTTCCCS--SSCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhheeeecCCCCccCc----cccchhheeeeeeeeecC--CCCCCCccHHHHHHHHHHHHH
Confidence 3344455667777777886432111124 44555555555 889985 667778888998888888764
No 12
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=82.05 E-value=2.8 Score=36.73 Aligned_cols=81 Identities=7% Similarity=0.054 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccchhheecccccccccceeeCCccChHHHHHHHHHHHHhhhHHHHHH
Q 045809 42 WIQLSYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISMF 121 (549)
Q Consensus 42 ~i~~~~f~~i~~iG~~lL~l~~~~~~~~~~~s~~DAlF~avSAvt~TGLs~vd~~~~s~~gq~vl~~LiqiGGlg~~s~~ 121 (549)
....+.++++.++|+..++.......+....+|.||++-++..+|+.|.- |...-+..++++..+.+.+ |+++.++.
T Consensus 9 ~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyG--d~~P~t~~~r~~~~~~~~~-G~~~~~~~ 85 (139)
T 3eff_K 9 GAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYG--DLYPVTLWGRLVAVVVMVA-GITSFGLV 85 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCS--SSCCCSSHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCC--CCcCCCcCHHHHHHHHHHH-HHHHHHHH
Confidence 33444555667888888887322222223368999999999999888853 2222355777766555544 45444444
Q ss_pred HHHH
Q 045809 122 GLHA 125 (549)
Q Consensus 122 ~l~~ 125 (549)
.-.+
T Consensus 86 ~~~i 89 (139)
T 3eff_K 86 TAAL 89 (139)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 13
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=81.46 E-value=5.3 Score=34.93 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCCCCCCCCcccHHHHHHHHhhcccCccCCCCccCcccCCCCCCCCCcccccccccChhhHHHHHHHHH
Q 045809 452 VIFIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMF 531 (549)
Q Consensus 452 ~~~~~~l~~~e~~~~~~~~~~~~~~~~lFEvvSA~gtvGlS~G~~~~~~~~~~~~~~~~~~s~t~~l~~~~Klili~lM~ 531 (549)
+++..++...|.+. .++...++.++++=++..+.|||++ +. .| -++.+|++.++.|+
T Consensus 20 ~~~a~~~~~~e~~~--~~~~~~~~~~a~yf~~~T~tTvGyG--d~-----~P--------------~t~~~r~~~~~~~~ 76 (139)
T 3eff_K 20 LAGSYLAVLAERGA--PGAQLITYPRALWWSVETATTVGYG--DL-----YP--------------VTLWGRLVAVVVMV 76 (139)
T ss_dssp HHHHHHHHHTTSSC--TTCCCCCHHHHHHHHHHHHTTCCCS--SS-----CC--------------CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CCcccCCHHHHHHHHheeeecccCC--CC-----cC--------------CCcCHHHHHHHHHH
Confidence 34555556666532 1222357899999999999999963 31 12 46789999999999
Q ss_pred hcc
Q 045809 532 FGR 534 (549)
Q Consensus 532 iGR 534 (549)
+|=
T Consensus 77 ~G~ 79 (139)
T 3eff_K 77 AGI 79 (139)
T ss_dssp HHH
T ss_pred HHH
Confidence 883
No 14
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=81.35 E-value=5.8 Score=35.67 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHhcc-CCcccccccCCCchhHHHHHHHHHHhcCC
Q 045809 340 AITVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQVVNS-RHTGESVFDISIISPAILVLFVVMMYLPP 412 (549)
Q Consensus 340 l~~~~~l~~ig~il~~l~e~~~~~~~~~~~~~~l~~slFqsvSa-rTAGFst~d~~~~s~~~~~lliiLMfIGg 412 (549)
+...++++++++.+++..|-..+.-+-.+ +.+|++-++.+ .|.||- |+...++..+++.++.|++|-
T Consensus 56 ~~~~~~~i~~~a~~~~~~E~~~~~~~~~s----~~~a~y~s~vTltTVGYG--Di~P~t~~gr~~~~~~~l~Gv 123 (155)
T 2a9h_A 56 TVLLVIVLLAGSYLAVLAERGAPGAALIS----YPDALWWSVETATTVGYG--DLYPVTLWGRCVAVVVMVAGI 123 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCSSTTS----HHHHHHHHHHHHTTCCCS--SSCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccCc----ccceeheeeeeeecccCC--CCCCCChhHHHHHHHHHHHHH
Confidence 33344455667777777775421111113 44455555555 889985 667777888999888888874
No 15
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=79.91 E-value=9.9 Score=32.52 Aligned_cols=59 Identities=14% Similarity=0.065 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCCCCCCCcccHHHHHHHHhhcccCccCCCCccCcccCCCCCCCCCcccccccccChhhHHHHHHHHHh
Q 045809 453 IFIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFF 532 (549)
Q Consensus 453 ~~~~~l~~~e~~~~~~~~~~~~~~~~lFEvvSA~gtvGlS~G~~~~~~~~~~~~~~~~~~s~t~~l~~~~Klili~lM~i 532 (549)
++...+...|++.. ++...++.+++.=++..+.|||++ +. . --++.+|++.++.|+.
T Consensus 42 ~~a~~~~~~E~~~~--~~~~~~~~~a~y~~~~T~tTvGyG--Di-----~--------------P~t~~gr~~~~~~~~~ 98 (122)
T 2ih3_C 42 AGSYLAVLAERGAP--GAQLITYPRALWWACETATTVAYG--DL-----Y--------------PVTLWGRLVAVVVMVA 98 (122)
T ss_dssp HHHHHHHHHHTTST--TCCCCSHHHHHHHHHHHHTTCCCS--SS-----C--------------CCSHHHHHHHHHHHHH
T ss_pred HHHHhhheeeecCC--CCccCccccchhheeeeeeeeecC--CC-----C--------------CCCccHHHHHHHHHHH
Confidence 44555566775421 222257889999888888999964 31 1 2577899999999998
Q ss_pred cc
Q 045809 533 GR 534 (549)
Q Consensus 533 GR 534 (549)
|=
T Consensus 99 Gi 100 (122)
T 2ih3_C 99 GI 100 (122)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 16
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=79.57 E-value=7.7 Score=30.73 Aligned_cols=55 Identities=11% Similarity=0.036 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcccHHHHHHHHhhcccCccCCCCccCcccCCCCCCCCCcccccccccChhhHHHHHHH
Q 045809 450 YLVIFIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILV 529 (549)
Q Consensus 450 ~~~~~~~~l~~~e~~~~~~~~~~~~~~~~lFEvvSA~gtvGlS~G~~~~~~~~~~~~~~~~~~s~t~~l~~~~Klili~l 529 (549)
.+..+.......|+ .++.|+++-++..+.|+|+ |+. . --++.+|++.++.
T Consensus 13 ~~~~g~~~~~~~e~---------~~~~~a~yf~~~T~tTvGy--Gdi-----~--------------P~t~~~r~~~~~~ 62 (82)
T 3ldc_A 13 VIIYGTAGFHFIEG---------ESWTVSLYWTFVTIATVGY--GDY-----S--------------PHTPLGMYFTCTL 62 (82)
T ss_dssp HHHHHHHHHHHHHC---------CCHHHHHHHHHHHHTTCCC--CSS-----C--------------CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---------CCHHHHHHHHHHHhcccCC--CCC-----C--------------CCCccHHHHHHHH
Confidence 33445555556674 4789999999999999996 431 1 2478999999999
Q ss_pred HHhcc
Q 045809 530 MFFGR 534 (549)
Q Consensus 530 M~iGR 534 (549)
|+.|=
T Consensus 63 ~~~G~ 67 (82)
T 3ldc_A 63 IVLGI 67 (82)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99873
No 17
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=79.27 E-value=7.6 Score=32.90 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=32.3
Q ss_pred ccHHHHHHHHhhcccCccCCCCccCcccCCCCCCCCCcccccccccChhhHHHHHHHHHhcc
Q 045809 473 FNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGR 534 (549)
Q Consensus 473 ~~~~~~lFEvvSA~gtvGlS~G~~~~~~~~~~~~~~~~~~s~t~~l~~~~Klili~lM~iGR 534 (549)
.++.++++-++..+.|||++ +. . --++.+|++.++.|++|=
T Consensus 48 ~~~~~a~y~~~~T~tTvGyG--di-----~--------------P~t~~gr~~~~~~~~~G~ 88 (114)
T 2q67_A 48 LRPIDALYFSVVTLTTVGAG--NF-----S--------------PQTDFGKIFTILYIFIGI 88 (114)
T ss_dssp CCHHHHHHHHHHHHTSCCCS--SC-----C--------------CCSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcceeCC--CC-----c--------------cCCHhHHHHHHHHHHHHH
Confidence 57899999999999999963 31 1 246789999999998874
No 18
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=77.09 E-value=4.8 Score=33.14 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=47.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccchhheecccccccccceeeCCccChHHHHHHHHHHHHhhhHH
Q 045809 38 VNPLWIQLSYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVF 117 (549)
Q Consensus 38 ~~p~~i~~~~f~~i~~iG~~lL~l~~~~~~~~~~~s~~DAlF~avSAvt~TGLs~vd~~~~s~~gq~vl~~LiqiGGlg~ 117 (549)
..+.+.....++++.++|++..+. . ++.++.||++-++..+|+-|.- |...-+..++++..+.+.+| +++
T Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~~~-~------e~~~~~~a~yf~~~T~tTvGyG--di~P~t~~gr~~~~~~~~~G-~~~ 73 (97)
T 3ouf_A 4 DKEFQVLFVLTILTLISGTIFYST-V------EGLRPIDALYFSVVTLTTVGYG--DFSPQTDFGKIFTILYIFIG-IGL 73 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-H------SCCCHHHHHHHHHHHHTTCCCC--SSCCCSHHHHHHHHHHHHHH-HHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-h------cCCCHHHHHHHHHHHHHccCCC--CCCCCCccHHHHHHHHHHHH-HHH
Confidence 345566666666677888887775 1 3367999999988888887753 33333567888776666655 443
Q ss_pred HH
Q 045809 118 IS 119 (549)
Q Consensus 118 ~s 119 (549)
..
T Consensus 74 ~~ 75 (97)
T 3ouf_A 74 VF 75 (97)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 19
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=76.31 E-value=8.7 Score=30.43 Aligned_cols=58 Identities=19% Similarity=0.125 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHhcc-CCcccccccCCCchhHHHHHHHHHHhcCC
Q 045809 342 TVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQVVNS-RHTGESVFDISIISPAILVLFVVMMYLPP 412 (549)
Q Consensus 342 ~~~~l~~ig~il~~l~e~~~~~~~~~~~~~~l~~slFqsvSa-rTAGFst~d~~~~s~~~~~lliiLMfIGg 412 (549)
..+.+.+.+++.+...|- .+ +.+|++.++.+ .|-|| .|+...++..+++.++.|++|-
T Consensus 9 l~~~~~~~g~~~~~~~e~-------~~----~~~a~yf~~~T~tTvGy--Gdi~P~t~~~r~~~~~~~~~G~ 67 (82)
T 3ldc_A 9 LVLAVIIYGTAGFHFIEG-------ES----WTVSLYWTFVTIATVGY--GDYSPHTPLGMYFTCTLIVLGI 67 (82)
T ss_dssp HHHHHHHHHHHHHHHHHC-------CC----HHHHHHHHHHHHTTCCC--CSSCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-------CC----HHHHHHHHHHHhcccCC--CCCCCCCccHHHHHHHHHHHHH
Confidence 334455667777765653 24 44555555555 88898 4556667888888888887763
No 20
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=75.73 E-value=5.8 Score=35.66 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCcccchhheecccccccccceeeCCccChHHHHHHHHHHHHhhhHHHHHH
Q 045809 47 YFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISMF 121 (549)
Q Consensus 47 ~f~~i~~iG~~lL~l~~~~~~~~~~~s~~DAlF~avSAvt~TGLs~vd~~~~s~~gq~vl~~LiqiGGlg~~s~~ 121 (549)
..++++++|+.+++......++....++.||++-++..+|+.|.- |...-+..++++..+.+.+|-..+....
T Consensus 58 ~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYG--Di~P~t~~gr~~~~~~~l~Gv~~~a~~~ 130 (155)
T 2a9h_A 58 LLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYG--DLYPVTLWGRCVAVVVMVAGITSYGLVF 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCS--SSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCC--CCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 344456788888876321111123357999999999888888864 4434466788777666555544333333
No 21
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=75.30 E-value=5 Score=33.26 Aligned_cols=61 Identities=16% Similarity=0.092 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcccHHHHHHHHhhcccCccCCCCccCcccCCCCCCCCCcccccccccChhhHHHHHHHH
Q 045809 451 LVIFIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVM 530 (549)
Q Consensus 451 ~~~~~~~l~~~e~~~~~~~~~~~~~~~~lFEvvSA~gtvGlS~G~~~~~~~~~~~~~~~~~~s~t~~l~~~~Klili~lM 530 (549)
++++..++...|+... ++...++.++++=++..+.|||++ +. .| -++.+|++.++.|
T Consensus 19 ~~~~a~~~~~~E~~~~--~~~~~~~~~a~y~~~~T~tTvGyG--Di-----~P--------------~t~~gr~~~~~~~ 75 (103)
T 2k1e_A 19 LEEASKKAVEAERGAP--GAALISYPDAIWWSVETATTVGYG--DR-----YP--------------VTEEGRKVAEQVM 75 (103)
T ss_dssp HHHHHHHHHHHHTTST--TCCCCCGGGTTTTTTGGGGCCSCC--SS-----CC--------------CSSSCTHHHHHHH
T ss_pred HHHHHHhhhhhccCCC--CcccccHHHHHHHHHHHHhcccCC--CC-----CC--------------CChhHHHHHHHHH
Confidence 3445556666775321 122247888888888898999964 31 12 4567899999998
Q ss_pred Hhcc
Q 045809 531 FFGR 534 (549)
Q Consensus 531 ~iGR 534 (549)
+.|=
T Consensus 76 l~G~ 79 (103)
T 2k1e_A 76 KAGI 79 (103)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 22
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=74.97 E-value=9.4 Score=33.73 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=32.4
Q ss_pred ccHHHHHHHHhhcccCccCCCCccCcccCCCCCCCCCcccccccccChhhHHHHHHHHHhcc
Q 045809 473 FNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGR 534 (549)
Q Consensus 473 ~~~~~~lFEvvSA~gtvGlS~G~~~~~~~~~~~~~~~~~~s~t~~l~~~~Klili~lM~iGR 534 (549)
.++.++++=++..+.|||++ +. .| -++.+|++.++.|++|=
T Consensus 51 ~~~~~a~y~~~~t~tTvGyG--d~-----~p--------------~t~~~r~~~~~~~~~g~ 91 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVGDG--NF-----SP--------------QTDFGKVFTILYIFIGI 91 (148)
T ss_dssp CCHHHHHHHHHHHHTTCCCS--SC-----CC--------------CSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCC--CC-----CC--------------CCccHHHHHHHHHHHHH
Confidence 57899999999999999964 31 12 46789999999999883
No 23
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=68.90 E-value=10 Score=33.14 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=43.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccchhheecccccccccceeeCCccChHHHHHHHHHHHHhhhHH
Q 045809 38 VNPLWIQLSYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVF 117 (549)
Q Consensus 38 ~~p~~i~~~~f~~i~~iG~~lL~l~~~~~~~~~~~s~~DAlF~avSAvt~TGLs~vd~~~~s~~gq~vl~~LiqiGGlg~ 117 (549)
.+.....+..++++.++++..++... ++..+|.||++-++..+|+-|.- |...-+..|+++..+.+.+| .++
T Consensus 13 ~~~l~~~l~~~~~~~~~~~~~~~~~e-----~~~~~~~~a~y~~~~T~tTvGyG--Di~P~t~~gr~~~~~~~~~g-~~~ 84 (137)
T 4h33_A 13 SNGLNRFLMIFVLLVIIIPVPMVFIE-----PEINNYPDALWWAIVTATTVGYG--DIVPVTPIGRILASIMMLFG-IAF 84 (137)
T ss_dssp TTHHHHHHHHHHHHHHHTHHHHHHHC-----SSCCSHHHHHHHHHHHHTTCCCS--SSCCCSHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHcccCC--CCCCCCHhHHHHHHHHHHHH-HHH
Confidence 33343333444444455555555421 12357999999998888877743 33333678888776666655 444
Q ss_pred HHHH
Q 045809 118 ISMF 121 (549)
Q Consensus 118 ~s~~ 121 (549)
.++.
T Consensus 85 ~~~~ 88 (137)
T 4h33_A 85 IGMI 88 (137)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 24
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=68.35 E-value=15 Score=32.09 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=32.7
Q ss_pred ccHHHHHHHHhhcccCccCCCCccCcccCCCCCCCCCcccccccccChhhHHHHHHHHHhcc
Q 045809 473 FNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGR 534 (549)
Q Consensus 473 ~~~~~~lFEvvSA~gtvGlS~G~~~~~~~~~~~~~~~~~~s~t~~l~~~~Klili~lM~iGR 534 (549)
.++.+++.=++....|||+ |+. .| -++.+|++.++.|++|-
T Consensus 42 ~~~~~a~y~~~~T~tTvGy--GDi-----~P--------------~t~~gr~~~~~~~~~g~ 82 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGY--GDI-----VP--------------VTPIGRILASIMMLFGI 82 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCC--SSS-----CC--------------CSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcccC--CCC-----CC--------------CCHhHHHHHHHHHHHHH
Confidence 4788898888888899996 431 22 57899999999999984
No 25
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=65.17 E-value=25 Score=35.57 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCcccchhheecccccccccceeeCCccChHHHHHHHHHHHHhhhHHHHHH
Q 045809 45 LSYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISMF 121 (549)
Q Consensus 45 ~~~f~~i~~iG~~lL~l~~~~~~~~~~~s~~DAlF~avSAvt~TGLs~vd~~~~s~~gq~vl~~LiqiGGlg~~s~~ 121 (549)
+..|+++.++++++.++-..........+|.||++-|+..+|+.|--- ...-+..++++..+.+ +-|+++.++.
T Consensus 68 ~~~~l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGD--i~P~t~~gr~~~~~~~-l~G~~~~a~~ 141 (333)
T 1p7b_A 68 AALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGD--MHPQTVYAHAIATLEI-FVGMSGIALS 141 (333)
T ss_dssp HHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSC--CCCCSHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCC--CcCCCHHHHHHHHHHH-HHHHHHHHHH
Confidence 344455556666664431111111123579999999999999888643 3333567777665544 4555444433
No 26
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=59.47 E-value=32 Score=32.01 Aligned_cols=70 Identities=11% Similarity=0.119 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCcccchhheecccccccccceeeCCccChHHHHHHHHHHHHhhhHHHHH
Q 045809 48 FISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISM 120 (549)
Q Consensus 48 f~~i~~iG~~lL~l~~~~~~~~~~~s~~DAlF~avSAvt~TGLs~vd~~~~s~~gq~vl~~LiqiGGlg~~s~ 120 (549)
.+.+..+|+...+.......+....++.||++-++..+|+.|-- |...-+..++++..+.+..| .++..+
T Consensus 140 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyG--di~P~t~~~~~~~~~~~~~G-~~~~~~ 209 (223)
T 1orq_C 140 VMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYG--DVVPATPIGKVIGIAVMLTG-ISALTL 209 (223)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCC--SSCCCSHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCC--CCCCCCHhHHHHHHHHHHHH-HHHHHH
Confidence 33445677777776322112122358999999999888888764 44344667877665555554 444433
No 27
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=56.98 E-value=34 Score=31.82 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHhcc-CCcccccccCCCchhHHHHHHHHHHhcCC
Q 045809 342 TVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQVVNS-RHTGESVFDISIISPAILVLFVVMMYLPP 412 (549)
Q Consensus 342 ~~~~l~~ig~il~~l~e~~~~~~~~~~~~~~l~~slFqsvSa-rTAGFst~d~~~~s~~~~~lliiLMfIGg 412 (549)
..+.+..+++..++..|.+++. +...++.+|++-++.+ .|.||. |+...++..+++.++.|++|.
T Consensus 139 ~~~~~~~~~~~~~~~~e~~~~~----~~~~~~~~s~y~~~~t~tTvGyG--di~P~t~~~~~~~~~~~~~G~ 204 (223)
T 1orq_C 139 AVMLTVLYGAFAIYIVEYPDPN----SSIKSVFDALWWAVVTATTVGYG--DVVPATPIGKVIGIAVMLTGI 204 (223)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTT----CSCCSHHHHHHHHHHHHTTCCCC--SSCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcC----CCcCcchhHHHhHHhHHhccCCC--CCCCCCHhHHHHHHHHHHHHH
Confidence 3344455566667667653221 1112344555555555 888985 666677888888888888764
No 28
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=54.90 E-value=26 Score=34.87 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=32.6
Q ss_pred CCcccchhheecccccccccceeeCCccChHHHHHHHHHHHHhhhHHHHHH
Q 045809 71 NPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISMF 121 (549)
Q Consensus 71 ~~s~~DAlF~avSAvt~TGLs~vd~~~~s~~gq~vl~~LiqiGGlg~~s~~ 121 (549)
..++.||++-|+..+|+.|-- |+..-+..++++..+.+ +.|+++.++.
T Consensus 80 ~~s~~~a~yfs~vT~tTvGYG--Di~P~t~~gr~~~~~~~-l~G~~~~a~~ 127 (301)
T 1xl4_A 80 PGSFTDAFFFSVQTMATIGYG--KLIPIGPLANTLVTLEA-LCGMLGLAVA 127 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCCS--SSCCCHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred cCCHHHHHHHhhhheeccCCC--CCcCCCHHHHHHHHHHH-HHHHHHHHHH
Confidence 468999999999999998876 44444567776664444 4555444433
No 29
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=46.91 E-value=18 Score=36.39 Aligned_cols=73 Identities=10% Similarity=-0.027 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCcccchhheecccccccccceeeCCccChHHHHHHHHHHHHhhhHHHHH
Q 045809 45 LSYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISM 120 (549)
Q Consensus 45 ~~~f~~i~~iG~~lL~l~~~~~~~~~~~s~~DAlF~avSAvt~TGLs~vd~~~~s~~gq~vl~~LiqiGGlg~~s~ 120 (549)
...++++..+++.+.+......+++.-.++.||++-++-.+|+.|-. |...-+..++++..+.+..| .++..+
T Consensus 133 ~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGyg--d~~p~t~~~~~~~~~~~~~g-~~~~~~ 205 (355)
T 3beh_A 133 TTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYG--DTIPQSFAGRVLAGAVMMSG-IGIFGL 205 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCS--SSCCCSHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCC--CCCCCChhHHHHHHHHHHHH-HHHHHH
Confidence 33444556777777776221111011137899999999988888864 44344667777665555555 544433
No 30
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=41.33 E-value=86 Score=31.06 Aligned_cols=41 Identities=7% Similarity=0.100 Sum_probs=32.4
Q ss_pred ccHHHHHHHHhhcccCccCCCCccCcccCCCCCCCCCcccccccccChhhHHHHHHHHHhcc
Q 045809 473 FNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGR 534 (549)
Q Consensus 473 ~~~~~~lFEvvSA~gtvGlS~G~~~~~~~~~~~~~~~~~~s~t~~l~~~~Klili~lM~iGR 534 (549)
.++.++++=++..+.|||++ +. . -.++.+|++.++.|++|=
T Consensus 81 ~s~~~a~yfs~vT~tTvGYG--Di-----~--------------P~t~~gr~~~~~~~l~G~ 121 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYG--KL-----I--------------PIGPLANTLVTLEALCGM 121 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCS--SS-----C--------------CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhhheeccCCC--CC-----c--------------CCCHHHHHHHHHHHHHHH
Confidence 57889998888888999975 31 2 266789999999999874
No 31
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=39.24 E-value=46 Score=35.64 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHhcc-CCcccccccCCCchhHHHHHHHHHHhcC
Q 045809 367 LNFFEKLVASLFQVVNS-RHTGESVFDISIISPAILVLFVVMMYLP 411 (549)
Q Consensus 367 ~~~~~~l~~slFqsvSa-rTAGFst~d~~~~s~~~~~lliiLMfIG 411 (549)
.++.+++ +.++.+ +|.||. |+..-++..+++.+++|++|
T Consensus 50 ~~~~~~~----y~~~~t~tTvGyg--d~~p~~~~~~~~~~~~~~~g 89 (565)
T 4gx0_A 50 YSFMAGI----YWTITVMTTLGFG--DITFESDAGYLFASIVTVSG 89 (565)
T ss_dssp CCHHHHH----HHHHHHHTTCCCC--SSCCCSHHHHHHHHHHHHHH
T ss_pred Cchhhhh----heeeeeeeeecCC--CcCCCCccHHHHHHHHHHHH
Confidence 3555554 444444 899996 77666777788888877776
No 32
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=35.03 E-value=22 Score=38.31 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCcccchhheecccccccccceeeCCccChHHHHHHHHHHHHhh
Q 045809 46 SYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGG 114 (549)
Q Consensus 46 ~~f~~i~~iG~~lL~l~~~~~~~~~~~s~~DAlF~avSAvt~TGLs~vd~~~~s~~gq~vl~~LiqiGG 114 (549)
+..+++.++++++.+... ...++...+|.||++-++-.+|+.|.- |...-+..++++..+++.+|-
T Consensus 25 ~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~y~~~~t~tTvGyg--d~~p~~~~~~~~~~~~~~~g~ 90 (565)
T 4gx0_A 25 AFLLVMLLAYASIFRYLM-WHLEGRAYSFMAGIYWTITVMTTLGFG--DITFESDAGYLFASIVTVSGV 90 (565)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHTTCCCC--SSCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HhhcCCCCchhhhhheeeeeeeeecCC--CcCCCCccHHHHHHHHHHHHH
Confidence 334444455555444311 101123368999999999999999975 544446677777666555443
No 33
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=33.43 E-value=2e+02 Score=29.06 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=36.7
Q ss_pred hhHHHHHHHhhhcccCccccccCCcccccccChhHHHHHHHHHHHhcccHHHHHHH
Q 045809 246 QIFTFSVFTTASTFSNCGFVPTNENMMVFKKNALLLLILFPQGLLGNTLYPSCLRF 301 (549)
Q Consensus 246 ~~~~~AiF~avSAf~naGFs~~~~sl~~y~~~~~v~~vi~~liilGGlgF~v~~~~ 301 (549)
.++.+|++.|+.+++|-|+.-. .+-...+...++..+.+++|=+-+.+...+
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~----~p~~~~~~~~~l~~~~~l~G~~l~a~~~gi 144 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFR----CVTEECPLAVFMVVVQSIVGCIIDSFMIGA 144 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSS----EECSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhheeeeeeEeecCCCc----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999422 222235777888888877776555554443
No 34
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=31.40 E-value=68 Score=31.95 Aligned_cols=63 Identities=21% Similarity=0.085 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHhcc-CCcccccccCCCchhHHHHHHHHHHhcCC
Q 045809 344 FGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQVVNS-RHTGESVFDISIISPAILVLFVVMMYLPP 412 (549)
Q Consensus 344 ~~l~~ig~il~~l~e~~~~~~~~~~~~~~l~~slFqsvSa-rTAGFst~d~~~~s~~~~~lliiLMfIGg 412 (549)
+++..+++.+++..|.+.+ .+..+.+.+|++-++.+ +|.||. |+...++..+++.++.|++|-
T Consensus 137 ~~~~~~~a~~~~~~e~~~~----~~~f~~~~~s~y~~~~t~ttvGyg--d~~p~t~~~~~~~~~~~~~g~ 200 (355)
T 3beh_A 137 GVVLFAVALAAYVIERDIQ----PEKFGSIPQAMWWAVVTLSTTGYG--DTIPQSFAGRVLAGAVMMSGI 200 (355)
T ss_dssp HHHHHHHHHHHHHHHTTTC----HHHHSSHHHHHHHHHHHHTTCCCS--SSCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCC----CcccccHHHHHHHHHhheeecCCC--CCCCCChhHHHHHHHHHHHHH
Confidence 3344556666666664321 01122455666666666 888985 666667778888888887764
No 35
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=30.90 E-value=1.7e+02 Score=29.14 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=31.3
Q ss_pred cHHHHHHHHhhcccCccCCCCccCcccCCCCCCCCCcccccccccChhhHHHHHHHHHhcc
Q 045809 474 NVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGR 534 (549)
Q Consensus 474 ~~~~~lFEvvSA~gtvGlS~G~~~~~~~~~~~~~~~~~~s~t~~l~~~~Klili~lM~iGR 534 (549)
++.++++=++..+.|||+ |+. . -.+..+|++.++.|++|=
T Consensus 78 s~~~a~y~s~vT~tTVGY--GDi-----~--------------P~t~~gr~~~~~~~l~G~ 117 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGY--GDM-----H--------------PQTVYAHWIATLEIFVGM 117 (321)
T ss_dssp THHHHHHHHHHHHTTCCC--CSS-----C--------------BCSHHHHHHHHHHHHHHH
T ss_pred chhheeeeeeEEeccccC--CCc-----C--------------cccHHHHHHHHHHHHHHH
Confidence 788999888888899996 431 1 356789999999998874
No 36
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=30.79 E-value=1.5e+02 Score=30.02 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=36.7
Q ss_pred hhHHHHHHHhhhcccCccccccCCcccccccChhHHHHHHHHHHHhcccHHHHHHH
Q 045809 246 QIFTFSVFTTASTFSNCGFVPTNENMMVFKKNALLLLILFPQGLLGNTLYPSCLRF 301 (549)
Q Consensus 246 ~~~~~AiF~avSAf~naGFs~~~~sl~~y~~~~~v~~vi~~liilGGlgF~v~~~~ 301 (549)
.++.+|++.|+.+.+|-|+.- +.+-...+...++..+.+++|=+-+.+...+
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd----~~p~~~~~~g~~l~~~~~l~G~~l~a~~~gi 141 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGY----RVITDKCPEGIILLLIQSVLGSIVNAFMVGC 141 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSS----SCBCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHhhhheeeeeecCCC----ccCcCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999942 2232235777888888888876555544443
No 37
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=26.18 E-value=86 Score=31.75 Aligned_cols=54 Identities=17% Similarity=0.097 Sum_probs=34.7
Q ss_pred CcccchhheecccccccccceeeCCccChHHHHHHHHHHHHhhhHHHHHHHHHH
Q 045809 72 PKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISMFGLHA 125 (549)
Q Consensus 72 ~s~~DAlF~avSAvt~TGLs~vd~~~~s~~gq~vl~~LiqiGGlg~~s~~~l~~ 125 (549)
.++.||++-|+...|+-|---.....-+..++++..+.+.+|=+.+.....++.
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ 143 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMF 143 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999988764433334567776655555454444444444443
No 38
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=24.06 E-value=4.2 Score=40.76 Aligned_cols=66 Identities=5% Similarity=-0.000 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCcccchhheecccccccccceeeCCccChHHHHHHHHHHHHhhhHHHHHH
Q 045809 46 SYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISMF 121 (549)
Q Consensus 46 ~~f~~i~~iG~~lL~l~~~~~~~~~~~s~~DAlF~avSAvt~TGLs~vd~~~~s~~gq~vl~~LiqiGGlg~~s~~ 121 (549)
..++++.++|++.++.. ++.+|.||++-++-.+|+.|.- |....+..++++..+.+. .|+++.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~-------e~~~~~~a~y~~~~t~tTvGyG--d~~p~t~~~r~~~~~~~~-~g~~~~~~~ 90 (336)
T 1lnq_A 25 LLVLAVIIYGTAGFHFI-------EGESWTVSLYWTFVTIATVGYG--DYSPSTPLGMYFTVTLIV-LGIGTFAVA 90 (336)
T ss_dssp TTTTTSHHHHTTTTTTS-------SSCCSSTTHHHHHHHHTTCCCS--SCCCCCSSHHHHHTHHHH-TTSTTTTTH
T ss_pred HHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHhhcccCC--CCCCCCcCHHHHHHHHHH-HHHHHHHHH
Confidence 33444557777777641 2358999999999888888864 332335567776655544 455444333
No 39
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=23.58 E-value=1.5e+02 Score=29.83 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=32.0
Q ss_pred ccHHHHHHHHhhcccCccCCCCccCcccCCCCCCCCCcccccccccChhhHHHHHHHHHhcc
Q 045809 473 FNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGR 534 (549)
Q Consensus 473 ~~~~~~lFEvvSA~gtvGlS~G~~~~~~~~~~~~~~~~~~s~t~~l~~~~Klili~lM~iGR 534 (549)
.++.++++=++..+.|||+ |+. . --++.+|++.++.|++|=
T Consensus 95 ~s~~~a~yfs~vT~tTVGY--GDi-----~--------------P~t~~gr~~~~~~~l~G~ 135 (333)
T 1p7b_A 95 PGFVGAFFFSVETLATVGY--GDM-----H--------------PQTVYAHAIATLEIFVGM 135 (333)
T ss_dssp SSTHHHHHHHTTTTTTCCC--SCC-----C--------------CCSHHHHHHHHHHHHHHH
T ss_pred CcHHHhHhhhheeeeecCC--CCC-----c--------------CCCHHHHHHHHHHHHHHH
Confidence 4688999999999999996 431 2 246789999999999874
No 40
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=22.55 E-value=2.4e+02 Score=28.04 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=30.8
Q ss_pred CcccchhheecccccccccceeeCCccChHHHHHHHHHHHHhhhHHHHHH
Q 045809 72 PKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISMF 121 (549)
Q Consensus 72 ~s~~DAlF~avSAvt~TGLs~vd~~~~s~~gq~vl~~LiqiGGlg~~s~~ 121 (549)
.+|.||++-|+..+|+.|-- |+...+..+.++-.+.+. .|+++.++.
T Consensus 77 ~s~~~a~y~s~vT~tTVGYG--Di~P~t~~gr~~~~~~~l-~G~~~~a~~ 123 (321)
T 2qks_A 77 AGFGGAFFFSVETLATVGYG--DMHPQTVYAHWIATLEIF-VGMSSIALA 123 (321)
T ss_dssp TTHHHHHHHHHHHHTTCCCC--SSCBCSHHHHHHHHHHHH-HHHHHHHHH
T ss_pred cchhheeeeeeEEeccccCC--CcCcccHHHHHHHHHHHH-HHHHHHHHH
Confidence 48999999999998888854 333345677766545444 455444333
No 41
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=22.53 E-value=79 Score=32.05 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=35.0
Q ss_pred CcccchhheecccccccccceeeCCccChHHHHHHHHHHHHhhhHHHH-HHHHHH
Q 045809 72 PKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFIS-MFGLHA 125 (549)
Q Consensus 72 ~s~~DAlF~avSAvt~TGLs~vd~~~~s~~gq~vl~~LiqiGGlg~~s-~~~l~~ 125 (549)
.++.||++-|+...|+.|---.....-++.++++.. +..+-|+.+.+ ...+++
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~-~~~l~G~~l~a~~~giv~ 146 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVV-VQSIVGCIIDSFMIGAIM 146 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 579999999999999999765544344677877554 44455554443 344433
Done!