RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 045809
(549 letters)
>gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family. The
proteins of the Trk family are derived from
Gram-negative and Gram-positive bacteria, yeast and
wheat. The proteins of E. coli K12 TrkH and TrkG as well
as several yeast proteins have been functionally
characterized.The E. coli TrkH and TrkG proteins are
complexed to two peripheral membrane proteins, TrkA, an
NAD-binding protein, and TrkE, an ATP-binding protein.
This complex forms the potassium uptake system. This
family is specific for the eukaryotic Trk system
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 800
Score = 302 bits (775), Expect = 1e-93
Identities = 120/442 (27%), Positives = 205/442 (46%), Gaps = 44/442 (9%)
Query: 137 ENRINPNLTPSSSSSSSSSSSENSTEFTDQIELGIVSHSYITNEEPNNGLENEHRMSSND 196
E+ N SS S S S + + S ++ N L + + N
Sbjct: 368 EDNGNHLSASSSFGSEEPSLSSEENLYPTYNKKREDSRHTLSKTMSTNYLSWQPTIGRNS 427
Query: 197 DNL-------------KYNSVRVLVYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQK 243
+ + +Y +++ L +VL Y L +++G L+ + + + ++++ K
Sbjct: 428 NFVGLTKEQKDELGGIEYRALKCLCSIVLVYFLGFNILGFVLLLPWINHVKTYSEVVRSK 487
Query: 244 GLQIFTFSVFTTASTFSNCGFVPTNENMMVFKKNALLLLILFPQGLLGNTLYPSCLRFVI 303
G+ + FT S F+N G T E+M+ F KN+ LLL++ ++GNT +P LR +I
Sbjct: 488 GVSPTWWGFFTAMSAFANLGLTLTPESMVSFNKNSYLLLLMIWFIIIGNTGFPIFLRLII 547
Query: 304 WVLKKIT----NREEFDYILRNSKEMIYRHLLSKAYSYFLAITVFGFIFVQLVLFCALEW 359
W+L KI+ R+E L + + L +++L T+ G + L+LF L+W
Sbjct: 548 WILFKISPDLSKRKESLGFLLDHPRRCFTLLFPSGATWWLFFTLVGLNAIDLILFIILDW 607
Query: 360 DSEATDGLNFFEKLVASLFQVVNSRHTGESVFDISIISPAILVLFVVMMYLPPYTSFWPS 419
S DGL+ K++ LFQ V++R G +V D+S + PAI V +++MMY+
Sbjct: 608 GSSVVDGLSKGIKVLNGLFQSVSTRTAGFTVVDLSQLHPAIQVSYMLMMYVSVLPLAISI 667
Query: 420 RNREGDSRNFKEKKNKK----------KTFVQNFIFSQLS----YLVIFIILVCITERDK 465
R N++ K+F+ + QLS Y+ + + ++CI E K
Sbjct: 668 RRTNVYEEQSLGLYNEENEEHEGESSTKSFIGAHLRRQLSFDLWYIFLGLFIICICEGRK 727
Query: 466 MKK-DPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKV 524
++ DP NFNV N+ EV+SAYG VG S GYSC Y F G+++ K+
Sbjct: 728 IQDPDPPNFNVFNILFEVVSAYGTVGLSLGYSCSN------------YSFSGQFTTLSKL 775
Query: 525 ILILVMFFGRIKKFNMKGGKAW 546
++I ++ GR + +A
Sbjct: 776 VIIAMLIRGRHRGLPYALDRAI 797
Score = 82.7 bits (204), Expect = 2e-16
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 12/172 (6%)
Query: 4 FASTFVHFSSAKISCFHQCFLGLFLSSIRFLVLKVNPLWIQLSYF--ISISSVGYLILRV 61
TF+H + + R L V P +I + YF IS++ + ++L
Sbjct: 7 RYPTFIHIKLRSFGHISRDVIAKIAKVCRPLAKYVFPFFIAVHYFYIISLTIIASILL-- 64
Query: 62 SKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISMF 121
P NP ID F + A+T ++TV+M S +Q I++ ILM + +F+
Sbjct: 65 -YPSTVK--NPAYIDALFLAAGALTQGGLNTVDMNDLSLYQQIVLYILMLLTTPIFVHSC 121
Query: 122 GLHARSKFYSLNQLFENRINPNLTPSSSSSSSSSSSENSTEFTDQIELGIVS 173
R Y + F+ + + + + E D+ E G+
Sbjct: 122 LAFVR--LYWFERYFDGIRDSSKQRFFLRRTKTL---LQRELEDRPETGVAG 168
>gnl|CDD|217009 pfam02386, TrkH, Cation transport protein. This family consists of
various cation transport proteins (Trk) and V-type
sodium ATP synthase subunit J or translocating ATPase J
EC:3.6.1.34. These proteins are involved in active
sodium up-take utilising ATP in the process. TrkH a
member of the family from E. coli is a hydrophobic
membrane protein and determines the specificity and
kinetics of cation transport by the TrK system in E.
coli.
Length = 334
Score = 129 bits (326), Expect = 3e-33
Identities = 68/354 (19%), Positives = 128/354 (36%), Gaps = 51/354 (14%)
Query: 200 KYNSVRVLVYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQKGLQIFTFSVFTTASTF 259
+Y S++ L+ ++L + ++G ++++ P + G ++F + S F
Sbjct: 6 EYRSLKRLMKIILSFFKTIEIIGFVALSIWILYVPLYSACIVLLGGMPLFDAIFHSISAF 65
Query: 260 SNCGFVPTNENMMVFKKNALLLLILFPQGLLGNTLYPSCLRFVIWVLKKITNREEFDYIL 319
+N GF T++++ F N + L+ +LG T +P LR +IW+ KK +
Sbjct: 66 NNGGFSLTSDSIGSFNNNPFVELVTSFLIILGGTGFPVHLRLLIWIRKK------KKELS 119
Query: 320 RNSKEMIYRHLLSKAYSYFLAITVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQ 379
K+ F + + LE L +++ + FQ
Sbjct: 120 LFLKDHP--------------RRTFLLLLPGFITILLLEVLVVLLASLPLGSRILNAFFQ 165
Query: 380 VVNSRHTGESVFDISIISPAILVLFVVMMYLPPYTSFWPSRNRE-------GDSRNFKEK 432
V ++R G S D+S +SPA VL +++M++ +
Sbjct: 166 VSSTRTAGFSTIDLSQLSPATKVLLMLLMFIGGSPGSTAGGIKTITFAVILKALNWINRA 225
Query: 433 KNKKKTFVQNFIFSQLS--------YLVIFIILVCITERDKMKKDPLNFNVLNVTIEVIS 484
F L + L+CI E + + + EV+S
Sbjct: 226 FLPGAVEPVKFGGRHLREQLIRDAWAFFLLYFLICIFEGLLLSLTGYDP-FFDSLFEVVS 284
Query: 485 AYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGRIKKF 538
A+G VG S G + + GK++LI +M GR++
Sbjct: 285 AFGTVGLSLGIT------------TPNLSLSP---DLGKLVLIALMIIGRLEIL 323
Score = 31.5 bits (72), Expect = 1.3
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 48 FISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMT 107
+ + L+L V +S I F VS+ + ST+++ S +++
Sbjct: 132 LLLPGFITILLLEVLVVLLASLPLGSRILNAFFQVSSTRTAGFSTIDLSQLSPATKVLLM 191
Query: 108 ILMFVGG 114
+LMF+GG
Sbjct: 192 LLMFIGG 198
>gnl|CDD|223246 COG0168, TrkG, Trk-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism].
Length = 499
Score = 78.1 bits (193), Expect = 2e-15
Identities = 71/391 (18%), Positives = 138/391 (35%), Gaps = 74/391 (18%)
Query: 169 LGIVSHSYITNEEPNNGLENEHRMSSNDDNLKYNSVRVLVYVVLGYILVTHVVGSSLVAL 228
+GI+ + G +R + + + + +++ + L+AL
Sbjct: 132 MGIIVLAVAILPRLGVGGMRLYRAEARGPTKMGKIRPRIKNTAK-TLWLIYLLLTILLAL 190
Query: 229 YTSLAPSAKQILKQKGLQIFTFSVFTTASTFSNCGFVPTNENMMVFKKNALLLLILFPQG 288
LA G+ +F ++F + S F+N GF + ++ F + L+ LI+
Sbjct: 191 AFILA----------GMPLFD-AIFHSMSAFNNGGFSTHDASIGYFNGSPLINLIITILI 239
Query: 289 LLGNTLYPSCLRFVIWVLKKITNREEFDYILRNSKEMIYRHLLSKAYSYFLAITVFGFIF 348
+LG +P R +IW+ + + K +
Sbjct: 240 ILGGIGFPVHYRLLIWIKSLKF-------LSLDPK--------------LRFTLTLLLLA 278
Query: 349 VQLVLFCALEWDSEATDGLNFFEKLVASLFQVVN-------SRHTGESVFDISIISPAIL 401
L+ LE ++ G +FF L + FQ V+ +R TG + D+S PA L
Sbjct: 279 TGLLALFLLELNN-PDGGYSFFLSLRDAFFQSVSAIFQTGFTR-TGFNTVDLSQWPPATL 336
Query: 402 VLFVVMMY-----------------LPPYTSFWPSRNREGDSRNFKEKKNKKKTFVQNFI 444
VL +++M+ + R G K + ++ I
Sbjct: 337 VLLMLLMFIGGSPGSTAGGIKTTRFAVLLKALKRELRRLGHPNAVISVKIFGRAIDEDTI 396
Query: 445 FSQLSYLVIFIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPD 504
L++ ++++++ I + F ++ EV+SA+G VG S G +
Sbjct: 397 RKALAFFFLYLLILIIGALILILTGYDPF--IDALFEVVSAFGTVGLSLGIT-------- 446
Query: 505 SSCKDAWYGFVGRWSNQGKVILILVMFFGRI 535
K++LI +M GR+
Sbjct: 447 -----GDLASNFALPPLAKLVLIALMLIGRL 472
Score = 35.4 bits (82), Expect = 0.069
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 48 FISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGS-----SMSTVEMEVFSNFQ 102
++ + +L ++ P D FF SVSA+ + +TV++ +
Sbjct: 276 LLATGLLALFLLELNNPDGGYSFFLSLRDAFFQSVSAIFQTGFTRTGFNTVDLSQWPPAT 335
Query: 103 LIIMTILMFVGG 114
L+++ +LMF+GG
Sbjct: 336 LVLLMLLMFIGG 347
>gnl|CDD|233196 TIGR00933, 2a38, potassium uptake protein, TrkH family. The
proteins of the Trk family are derived from
Gram-negative and Gram-positive bacteria, yeast and
wheat. The proteins of E. coli K12 TrkH and TrkG as well
as several yeast proteins have been functionally
characterized.The E. coli TrkH and TrkG proteins are
complexed to two peripheral membrane proteins, TrkA, an
NAD-binding protein, and TrkE, an ATP-binding protein.
This complex forms the potassium uptake system
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 390
Score = 68.4 bits (168), Expect = 2e-12
Identities = 71/357 (19%), Positives = 129/357 (36%), Gaps = 73/357 (20%)
Query: 197 DNLKYNSVRVLVYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQKGLQIFTFSVFTTA 256
L + + L+ +I V +++G+ L+A+ G ++F +
Sbjct: 88 GPLSDDKLLPLIKNTAKFIFVIYLLGTILLAVR----------FVLTGWMPLFDAIFHSI 137
Query: 257 STFSNCGFVPTNENMMVFKKNALLLLILFPQGLLGNTLYPSCLRFVIWVLKKITNREEFD 316
S F+N GF +++ + + + + L++ +LG L F + + R+
Sbjct: 138 SAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGG------LGFTVHYDVYLLLRKRVF 191
Query: 317 YILRNSKEMIYRHLLSKAYSYFLAITVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVAS 376
+ ++K F + + +LF LE + +F L+++
Sbjct: 192 KLSLDTK--------------VRLFVTFLLLAIGFILFLLLERGNTLY-SYSFGALLLSA 236
Query: 377 LFQVVNSRHTGESVFDISIISPAILVLFVVMMY-----------------LPPYTSFWPS 419
FQ R G S D + + A LVL +++M+ +
Sbjct: 237 FFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCSGSTAGGIKTTTFAILLKQVYRE 296
Query: 420 RNREGDSRNFKEKKNKKKTFVQNFIFSQLS--YLVIFIILVCITERDKMKKDPLNFNVLN 477
R R ++ KT + + S S + I L+ I E D L
Sbjct: 297 IRRGIHPRIIFSRRIGGKTIDKAILISVWSFFLVFALIFLLSILELISSGYDF-----LT 351
Query: 478 VTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGR 534
EV+SA+G VG S G + PD+ GK+ILI++MF GR
Sbjct: 352 SLFEVVSAFGTVGLSVGLTT--ANLPDA----------------GKLILIVLMFIGR 390
Score = 33.8 bits (78), Expect = 0.21
Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 75 IDVFFTSVSAMTGSSMSTVEM-EVFSNFQLIIMTILMFVGGEVFISMF---------GLH 124
ID FT+ SA+T + ++ ++ E L + ++L +GG F+ + +
Sbjct: 17 IDALFTATSAVTTTGLTVLDTLESLPKAGLFLRSLLQQIGGLGFMVLAVAILILLGKKIS 76
Query: 125 ARSKFY---SLNQLFENRINPNLT 145
++ Y +L L ++++ P +
Sbjct: 77 LGARLYLAEALGPLSDDKLLPLIK 100
Score = 32.6 bits (75), Expect = 0.56
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 48 FISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMT 107
++I + +L+L S+ + F S + + ST++ L+++
Sbjct: 207 LLAIGFILFLLLERGNTL-YSYSFGALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLL 265
Query: 108 ILMFVGG 114
+LMF+GG
Sbjct: 266 LLMFIGG 272
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 31.8 bits (72), Expect = 0.95
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 261 NCGFVPTNENMMVFKKNALLLLILFPQG------LLGNTLYPSCLRFVIWVLKKITNREE 314
GFV +E++ V +++ + +F G +L +T L+ V W+ K
Sbjct: 442 KRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVN 501
Query: 315 FDYILRNSKEMIYRHLLSKAYS 336
+ SK +IY+++ S Y+
Sbjct: 502 INVENWASKPIIYKNIPSVCYT 523
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 29.3 bits (66), Expect = 1.9
Identities = 13/16 (81%), Positives = 15/16 (93%)
Query: 147 SSSSSSSSSSSENSTE 162
SSSSSSSSSSS +S+E
Sbjct: 105 SSSSSSSSSSSSSSSE 120
Score = 28.5 bits (64), Expect = 3.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 145 TPSSSSSSSSSSSENST 161
+ SSSSSSSSSSS S+
Sbjct: 106 SSSSSSSSSSSSSSESS 122
Score = 28.2 bits (63), Expect = 5.5
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 145 TPSSSSSSSSSSSENST 161
+ SSSSSSSSSSS +S
Sbjct: 104 SSSSSSSSSSSSSSSSE 120
Score = 27.8 bits (62), Expect = 6.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 147 SSSSSSSSSSSENSTEFTD 165
SSSSSSSSS +S+ ++
Sbjct: 102 RRSSSSSSSSSSSSSSSSE 120
>gnl|CDD|216442 pfam01339, CheB_methylest, CheB methylesterase.
Length = 182
Score = 29.8 bits (68), Expect = 2.3
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 47 YFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGS 88
Y + + G L L + P + P +IDV F S + + G
Sbjct: 76 YHLLVERGGRLRLSLDDPPVN-GHRP-SIDVLFRSAAEVYGE 115
>gnl|CDD|215250 PLN02456, PLN02456, citrate synthase.
Length = 455
Score = 30.0 bits (68), Expect = 3.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 217 VTHVVGSSLVALYTSLA 233
H+VGSS V YTS+A
Sbjct: 267 ARHLVGSSGVDPYTSVA 283
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 28.9 bits (65), Expect = 7.0
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 104 IIMTILMFVGGEVFISMFGLHARSKFYSLNQLFENRINPNLT 145
I+T+L FV G + + H Y L Q F N PN T
Sbjct: 373 FILTVLFFVLGFAY-NHLSTHGFLAIYVLAQFFAN-FGPNAT 412
>gnl|CDD|178347 PLN02746, PLN02746, hydroxymethylglutaryl-CoA lyase.
Length = 347
Score = 29.0 bits (65), Expect = 7.1
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 129 FYSLNQLFENRINPNLTPSSSSSSSSSSSENSTEFTDQIELGIVSHSYITNEEPNNGLEN 188
+ + + SSSS+ +++ G+ I P +GL+N
Sbjct: 1 SRGSTSTVSGTLGSSWSFKEHQYSSSSNEVGVAHMHNKLLKGLPKFVKIVEVGPRDGLQN 60
Query: 189 EHRMSSNDDNLKYNSVRVLVYVVLGYILVTHVV 221
E + ++ ++ LV L + T V
Sbjct: 61 EKNIVPTSVKVEL--IQRLVSSGLPVVEATSFV 91
>gnl|CDD|216063 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus.
Members of this families are involved in Na+/K+, H+/K+,
Ca++ and Mg++ transport. This family represents 5
transmembrane helices.
Length = 175
Score = 28.0 bits (63), Expect = 8.3
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 322 SKEMIYRHLLSKAYSYFLAITVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQVV 381
S++++ R LL +AI F+ L+ F E T N +++ LF +
Sbjct: 47 SRKLLRRILL---QGLLIAIVTLLVFFLGLLGFGISESGLAQTMAFNTL--VLSQLFNAL 101
Query: 382 NSRHTGESVFDISIIS--------PAILVLFVVMMYLPPYTSF 416
N+R S+F I + S L+L ++++Y+P +
Sbjct: 102 NARSLRRSLFKIGLFSNKLLLLAVLLSLLLQLLIIYVPGLQAV 144
>gnl|CDD|221321 pfam11928, DUF3446, Domain of unknown function (DUF3446). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 80 to 99 amino acids in length. This domain is
found associated with pfam00096. This domain has a
single completely conserved residue P that may be
functionally important.
Length = 84
Score = 26.7 bits (59), Expect = 8.3
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 142 PNLTPSSSSSSSSSSSENSTEFTD 165
P+ +PSSSSSSSSSSS++
Sbjct: 35 PSSSPSSSSSSSSSSSQSPPLSCS 58
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 29.0 bits (65), Expect = 8.6
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 204 VRVLVYVVLGYILVTHV-----VGSSLVALYTSLAPSAKQILKQKGLQIFTFSV 252
+ +L Y LG + T V + ++A T+LAP AK+ ++ + I + V
Sbjct: 572 LNIL-YASLGEVTETDVEFASTTNAEILAFNTNLAPGAKKAARKLNIIIKEYQV 624
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.137 0.405
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,451,596
Number of extensions: 2687411
Number of successful extensions: 4263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4211
Number of HSP's successfully gapped: 86
Length of query: 549
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 447
Effective length of database: 6,413,494
Effective search space: 2866831818
Effective search space used: 2866831818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)