RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 045809
(549 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 2e-07
Identities = 83/464 (17%), Positives = 138/464 (29%), Gaps = 153/464 (32%)
Query: 127 SKFYSLNQL---FENRINPNLTPSSSSSSSSSSSENSTEFTDQIELGIVSH--SYITNE- 180
+ F+ +QL F + + E T EL V Y+++
Sbjct: 25 ASFFIASQLQEQF----------NKILPEPTEGFAADDEPTTPAEL--VGKFLGYVSSLV 72
Query: 181 EPNNGLENEHRMSSNDDNLKYNSVRVLVYVVLGYILVT--HVVGSSLVALYTSLAPSAKQ 238
EP+ + D L L Y+ H + + L+ + K+
Sbjct: 73 EPSK-------VGQFDQVLNL----CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 239 ILKQKGLQIFTFSVFTTASTFSNCGFVPTNENMMVFKKNALL---------LLILFP-QG 288
++K + TA + F + +AL L+ +F QG
Sbjct: 122 LIKN----------YITARIMAKRPFDKKSN-------SALFRAVGEGNAQLVAIFGGQG 164
Query: 289 --------L--LGNTLYPSCLRFVIWVLKKITNREEFDYILRNSKEM--IYRH------L 330
L L T Y + +I + E ++R + + ++
Sbjct: 165 NTDDYFEELRDLYQT-YHVLVGDLI-----KFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 331 LSKAYS-----YFLAITV-FGFIFV-QLVLFCALEWDSEATDGLNFFEKL---------- 373
L + Y L+I + I V QL + T G L
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG-ELRSYLKGATGHSQGL 277
Query: 374 VASLFQVVNSRHTGESVFDISIISPAILVLFVV-----MMYLPPYTSFWPSRNREGDSRN 428
V ++ + + ES F AI VLF + Y P TS PS DS
Sbjct: 278 VTAV--AIAETDSWESFFVSV--RKAITVLFFIGVRCYEAY--PNTSLPPSILE--DSLE 329
Query: 429 FKEK--------KNKKKTFVQNFIFSQLSYL----VIFIILVCITERDKMKKDPLNFNV- 475
E N + VQ+++ S+L + I LV N V
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN---------GAKNLVVS 380
Query: 476 --------LNVTIEVISAYGN-----VGFSTGYSCKRQLRPDSS 506
LN+T+ A + FS +R+L+ +
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFS-----ERKLKFSNR 419
Score = 40.4 bits (94), Expect = 0.002
Identities = 73/540 (13%), Positives = 142/540 (26%), Gaps = 214/540 (39%)
Query: 5 ASTFVHFSSAKISCFHQCFLG---------LFLSSIRFLVLKVNPLWIQLSYFISISSVG 55
F + ++ F C+L L ++K I+ +Y +
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK-ELIK-NYITARIMAK 134
Query: 56 YLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGG- 114
K +S+ + G++ ++ + F GG
Sbjct: 135 ---RPFDKKSNSALFR-----------AVGEGNA------QLVAIF-----------GGQ 163
Query: 115 ---EVFISMFGLHARSKFYSLNQLFENRINPNLTP--SSSSSSSSSSSENSTEFTDQIEL 169
+ + F L L++ + + S+ + S + +
Sbjct: 164 GNTDDY-----------FEELRDLYQ-TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 170 GIVSHSYITNEEPNNGLENEHRMSSNDDNLKYNSVRV----LV----YVV----LGY--- 214
G+ ++ N + + D L + ++ YVV LG+
Sbjct: 212 GLNILEWLENPSN----------TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 215 ILVTHVVGSS------LVALYTSLAPSAKQILKQ--KGLQIFTFSVFTTASTFSNCGFVP 266
L +++ G++ + A+ + S + K + + F + N P
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 267 TN-----EN-------M-------------MVFKKNALLLLILFPQGL-----LGNTL-- 294
+ EN M V K N+ L P G L N
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-----PAGKQVEISLVNGAKN 376
Query: 295 -----YPSCLRFVIWVLKKIT-------NREEF--------------------DYILRNS 322
P L + L+K +R F L +
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL-LVPA 435
Query: 323 KEMIYRHLLSKAYSYF---LAITVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQ 379
++I + L+ S+ + I V+ D+ DG +
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVY---------------DTF--DGSDL---------- 468
Query: 380 VVNSRHTGESVFDISIISPAILVLFVVMMYLPPYTS-----FWP----------SRNREG 424
R S+ I I+ L V + + F P RN++G
Sbjct: 469 ----RVLSGSI--SERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Score = 38.9 bits (90), Expect = 0.006
Identities = 41/246 (16%), Positives = 74/246 (30%), Gaps = 90/246 (36%)
Query: 55 GYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGG 114
G+ IL + NP N+ + F GG
Sbjct: 1658 GFSILDIVIN------NPVNLTIHF---------------------------------GG 1678
Query: 115 EVFISMFGLHARSKFYSLNQLFEN---------RINPNLTPSSSSSSSSSSSE--NSTEF 163
E G R + ++ +FE +I + S+S + S ++T+F
Sbjct: 1679 EK-----GKRIRENYSAM--IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1731
Query: 164 TDQIELGIVSHSYITNEEPNNGLENEHRMSSNDDNLKYNSVRVLVYVVLGYILVTHVVG- 222
T Q + E+ LK + G H +G
Sbjct: 1732 T-QP--ALTLMEKAAFED-----------------LKSKGLIPADATFAG-----HSLGE 1766
Query: 223 -SSLVAL--YTSLAPSAKQILKQKGLQIFTFSVFTTASTFSNCGFVPTNENMMV--FKKN 277
++L +L S+ S +++ +G +V SN G + N + F +
Sbjct: 1767 YAALASLADVMSIE-SLVEVVFYRG-MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 278 ALLLLI 283
AL ++
Sbjct: 1825 ALQYVV 1830
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 7e-05
Identities = 74/481 (15%), Positives = 159/481 (33%), Gaps = 123/481 (25%)
Query: 37 KVNPLW--IQL--SYFISISSVGYLILR--VSKPRDSSFINPKNIDVFFTSVSAMTGSSM 90
+ + L+ Q+ Y +S YL LR + + R + + + + GS
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQP-YLKLRQALLELRPAKNV----------LIDGVLGSGK 163
Query: 91 STVEMEVFSNFQLIIMTILMFVGGEVF-ISMFGLH-ARSKFYSLNQLFENRINPNLTPSS 148
+ V ++V +++ + + ++F +++ + + L +L +I+PN T S
Sbjct: 164 TWVALDVCLSYK-----VQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRS 217
Query: 149 SSSSSSSSSENSTEFTDQIELGIVSHSYITNEEPNNGLENEHRMSSND--DNLKYNSV-- 204
SS+ +S + ++ + S Y N L N++
Sbjct: 218 DHSSNIKLRIHSIQ--AELRRLLKSKPY------ENCL---------LVLLNVQNAKAWN 260
Query: 205 ------RVLVYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQKGLQIFTFSVFTTAST 258
++L + + VT + ++ + SL + + + +
Sbjct: 261 AFNLSCKIL--LTTRFKQVTDFLSAATTT-HISLDHHSMTLTPDEVKSLL--------LK 309
Query: 259 FSNCGF--VPTNENMMVFKKNALLLLILFPQGLLGNTLYPSCLRFVIWVLKKITNREEFD 316
+ +C +P E V N L ++ ++ + W K N ++
Sbjct: 310 YLDCRPQDLP-RE---VLTTNPRRL------SIIAESIRDGLATWDNW---KHVNCDKLT 356
Query: 317 YILRNSKEMIYRHLLSKAYSYFLAITVFGFIF-----VQLVLFCALEWDSEATDGLNFFE 371
I+ +S ++ K + +F + +L + +D +D +
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRL-------SVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 372 KLVA-SLFQVVNSRHTGESVFDISIISPAILVLFVVMMYLPPYTSFWPSRNREGDSRNFK 430
KL SL + + ES I P+I + V N R+
Sbjct: 410 KLHKYSLVE----KQPKESTISI----PSIYLELKV-----------KLENEYALHRSIV 450
Query: 431 EKKNKKKTF---------VQNFIFSQLSYLVIFIILVCITER-DKMKKDPLNFNVLNVTI 480
+ N KTF + + +S + + + I ER + L+F L I
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH---PERMTLFRMVFLDFRFLEQKI 507
Query: 481 E 481
Sbjct: 508 R 508
Score = 35.2 bits (80), Expect = 0.058
Identities = 42/295 (14%), Positives = 88/295 (29%), Gaps = 104/295 (35%)
Query: 306 LKKITNREEFDYIL--RNSKEMIYR---HLLSK---AYSYFLAITV---FGFIFVQL--- 351
K I ++EE D+I+ +++ R LLSK F+ + + F+ +
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 352 --------VLFCALEWDSEATDGLNF----------FEKLVASLFQVVNSR----H---- 385
++ + D D F + KL +L ++ ++
Sbjct: 102 QRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 386 TGESVFDISII-SPAILVLFVVMMYLPPYTSFW------------------------PSR 420
+G++ + + S + + FW P+
Sbjct: 161 SGKTWVALDVCLSYKVQCKM-------DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 421 NREGD-SRNFKEKKNKKKTFVQNFIFSQLSYLVIFIIL--V------------C---ITE 462
D S N K + + + ++ + S+ Y ++L V C +T
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 463 RDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYS---------CKRQLRPDSSCK 508
R K D L+ T + + ++ + C+ Q P
Sbjct: 273 RFKQVTDFLSA---ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Score = 32.1 bits (72), Expect = 0.57
Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 35/133 (26%)
Query: 431 EKKNKK--KTFVQ-------NFIFSQLSYLVI---FIILVCITERDKMKKDPLNFNVLNV 478
K ++ + FV+ F+ S + + + I +RD++ D F NV
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 479 T-IEVISAYGNVGFSTGYSCKRQLRPDSSCKDAW---YGFVGRWSNQGKVILIL-VMFFG 533
+ ++ +LRP G +G GK + L V
Sbjct: 132 SRLQPYLKLRQ--------ALLELRPAK-----NVLIDGVLG----SGKTWVALDVCLSY 174
Query: 534 RIKKFNMKGGKAW 546
+++ M W
Sbjct: 175 KVQC-KMDFKIFW 186
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein
structure initiative, NE consortium on membrane protein
structure; 3.51A {Vibrio parahaemolyticus}
Length = 494
Score = 32.6 bits (75), Expect = 0.31
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 25 GLFLSSIRFLVLKVNPLW--IQLSYFISISSVGYLILRVSKPRDSSFINPKNI--DVFFT 80
L ++ + W + FI I + +L+ + + S+ +P + F
Sbjct: 254 TLHFAAFASGGVHPKYYWKDPEFRAFIFIQVLLFLVCFLLLLKHHSYTSPYDAFDQALFQ 313
Query: 81 SVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGG 114
+VS T + +T + F +++ F+GG
Sbjct: 314 TVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGG 347
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 28.8 bits (65), Expect = 6.2
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 9/49 (18%)
Query: 373 LVAS-LFQVVNSRHTGESVFDISIIS-----PAILVLFVVM---MYLPP 412
LV + +NS +S+ + +I + + +Y+ P
Sbjct: 905 LVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDP 953
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.137 0.405
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,921,781
Number of extensions: 454462
Number of successful extensions: 1004
Number of sequences better than 10.0: 1
Number of HSP's gapped: 999
Number of HSP's successfully gapped: 17
Length of query: 549
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 451
Effective length of database: 3,965,535
Effective search space: 1788456285
Effective search space used: 1788456285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.0 bits)