RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 045809
         (549 letters)



>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 96

 Score = 27.8 bits (61), Expect = 1.2
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 152 SSSSSSENSTEFTDQIELGIVSHSYITNEEPNNGLENEHRMSSND 196
           SS SS  +   ++ ++ L +  +SY   + PN   E E  +++  
Sbjct: 2   SSGSSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGK 46


>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 477

 Score = 26.4 bits (58), Expect = 9.1
 Identities = 20/164 (12%), Positives = 39/164 (23%), Gaps = 25/164 (15%)

Query: 275 KKNALLLLILFPQGLLGNTLYPSCLRFVIWVLKKITNREEFDYILRNSKEMI-------- 326
           KKN    L        G  +    L  +I +L    N +    +     E++        
Sbjct: 52  KKNIGDGLSSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDD 111

Query: 327 YRHLLSKA----YSYFLAITVFGFIFVQL----VLFCALEWDSEATDGLNFFEKLVASLF 378
                 +        F       F  V +    V+   ++        +    K    + 
Sbjct: 112 TVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLIN 171

Query: 379 QVVNSRHTGESVFDISIISPAILVLFVVMMYLPPYTS-FWPSRN 421
            + N          I ++          +  +P Y    W    
Sbjct: 172 ILQNIEQMDTCYVCIRLLQ--------ELAVIPEYRDVIWLHEK 207


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,946,988
Number of extensions: 87639
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 6
Length of query: 549
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 459
Effective length of database: 1,171,896
Effective search space: 537900264
Effective search space used: 537900264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.0 bits)