BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045812
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q56Y11|DDPS2_ARATH Dehydrodolichyl diphosphate synthase 2 OS=Arabidopsis thaliana
GN=At5g58770 PE=2 SV=2
Length = 310
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 67/88 (76%), Gaps = 4/88 (4%)
Query: 22 EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDN 81
E MP+HVA+IMDGN RWA+ RGL GH AGV +L+E+VELC +WG++VLTVFAFS DN
Sbjct: 75 ELMPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDN 134
Query: 82 W----VEVEFLMKLFEKSIKSELEGFIR 105
W +E++FL LFE+S+K+E + +
Sbjct: 135 WIRPRIEIDFLFSLFERSLKTEFQNLAK 162
>sp|Q8DI29|ISPT_THEEB Isoprenyl transferase OS=Thermosynechococcus elongatus (strain
BP-1) GN=uppS PE=3 SV=1
Length = 251
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 64/90 (71%), Gaps = 4/90 (4%)
Query: 15 VAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTV 74
+ L+R+ +PRHVAVIMDGN RWA+QR LP GH+ GV +L++L+ C WG++ LT
Sbjct: 13 LPADLDRDRLPRHVAVIMDGNGRWAKQRNLPRIMGHQRGVDTLKDLLRCCKDWGIEALTA 72
Query: 75 FAFSYDNW----VEVEFLMKLFEKSIKSEL 100
+AFS +NW EVEFLM LFE+ ++ EL
Sbjct: 73 YAFSTENWGRPLPEVEFLMTLFEQVLRREL 102
>sp|Q8YRL4|ISPT2_NOSS1 Isoprenyl transferase 2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=uppS2 PE=3 SV=1
Length = 258
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 62/95 (65%), Gaps = 4/95 (4%)
Query: 15 VAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTV 74
L+ + +P+H+AVIMDGN RWA RGLP AGH G R+L+EL+ C WG+K LT
Sbjct: 14 TPPDLDPQKIPQHIAVIMDGNGRWATSRGLPRIAGHRQGARTLKELLRCCKDWGIKALTA 73
Query: 75 FAFSYDNWV----EVEFLMKLFEKSIKSELEGFIR 105
+AFS +NW EV+FLM LFE+ ++ EL R
Sbjct: 74 YAFSTENWQRPIEEVDFLMLLFERLLRRELSQMHR 108
>sp|Q55482|ISPT_SYNY3 Isoprenyl transferase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=uppS PE=3 SV=1
Length = 249
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 64/91 (70%), Gaps = 4/91 (4%)
Query: 15 VAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTV 74
+ L+++ +P+HVAVIMDGN RWA+QRG+P GH+ GV SL+ L+ C WG+ LT
Sbjct: 11 LPPDLDQQRLPQHVAVIMDGNGRWAKQRGMPRIMGHQRGVDSLKNLLRCCDDWGIAALTA 70
Query: 75 FAFSYDNW----VEVEFLMKLFEKSIKSELE 101
+AFS +NW EVEFLM LFE+ ++ EL+
Sbjct: 71 YAFSTENWGRPLEEVEFLMTLFERVLRRELK 101
>sp|Q7NPE7|ISPT_GLOVI Isoprenyl transferase OS=Gloeobacter violaceus (strain PCC 7421)
GN=uppS PE=3 SV=1
Length = 249
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 61/95 (64%), Gaps = 4/95 (4%)
Query: 14 GVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLT 73
+ L+ +PRHVA IMDGN RWA +R LP GH+AGV +L+EL+ C WG+ LT
Sbjct: 10 SLPSDLDPNRLPRHVAAIMDGNGRWASKRNLPRVMGHQAGVSALKELLRCCKDWGIGALT 69
Query: 74 VFAFSYDNW----VEVEFLMKLFEKSIKSELEGFI 104
V+AFS +NW EVEFLM LFEK + EL +
Sbjct: 70 VYAFSTENWKRPQYEVEFLMALFEKVLNHELSEMV 104
>sp|Q8GY03|DDPS4_ARATH Dehydrodolichyl diphosphate synthase 4 OS=Arabidopsis thaliana
GN=At5g58782 PE=2 SV=1
Length = 289
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 4/105 (3%)
Query: 3 LNRNNVILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVE 62
+++ ++ L RE MPRHVAVIMDGN RWA+Q GL +S G+EAG + L E +
Sbjct: 36 IDKGTYVVGEEETPKELQRELMPRHVAVIMDGNRRWAKQTGLLTSQGYEAGAKRLLEFAD 95
Query: 63 LCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKSELEGF 103
LC + G+ ++ FAFS +NW +EV+ LM LF++ +KS+++ F
Sbjct: 96 LCFKLGINTVSAFAFSTENWGRHKIEVKCLMYLFQRYLKSKIQFF 140
>sp|Q9ZEJ7|ISPT_ANAVT Isoprenyl transferase OS=Anabaena variabilis (strain ATCC 29413 /
PCC 7937) GN=uppS PE=3 SV=2
Length = 249
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 64/90 (71%), Gaps = 4/90 (4%)
Query: 19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
L RE +P+HVAVIMDGN RWA+++GLP GH+ GV +L++L+ C WG++ LT +AFS
Sbjct: 15 LKRELLPKHVAVIMDGNGRWAKRQGLPRIMGHKRGVDALKDLLRCCRDWGIQALTAYAFS 74
Query: 79 YDNWV----EVEFLMKLFEKSIKSELEGFI 104
+NW EVEFLM LF++ ++ EL +
Sbjct: 75 TENWKRPQEEVEFLMTLFQRVLRQELREMV 104
>sp|P58563|ISPT1_NOSS1 Isoprenyl transferase 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=uppS1 PE=3 SV=1
Length = 249
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 64/90 (71%), Gaps = 4/90 (4%)
Query: 19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
L RE +P+HVAVIMDGN RWA+++GLP GH+ GV +L++L+ C WG++ LT +AFS
Sbjct: 15 LKRELLPKHVAVIMDGNGRWAKRQGLPRIMGHKRGVDALKDLLRCCRDWGIQALTAYAFS 74
Query: 79 YDNWV----EVEFLMKLFEKSIKSELEGFI 104
+NW EVEFLM LF++ ++ EL +
Sbjct: 75 TENWKRPQEEVEFLMTLFQRVLRQELREMV 104
>sp|Q7V6T7|ISPT_PROMM Isoprenyl transferase OS=Prochlorococcus marinus (strain MIT 9313)
GN=uppS PE=3 SV=1
Length = 265
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 60/92 (65%), Gaps = 4/92 (4%)
Query: 18 GLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAF 77
GL+ +P HVAVIMDGN RWA+ RGLP GH AGV +L+ + LC WG+ LT +AF
Sbjct: 20 GLDPYRLPNHVAVIMDGNGRWAKARGLPRMVGHRAGVEALKRTLRLCSDWGIGALTAYAF 79
Query: 78 SYDNWV----EVEFLMKLFEKSIKSELEGFIR 105
S +NW EV FLM LFE+ ++ ELE R
Sbjct: 80 STENWSRPGDEVNFLMTLFERVLQRELESLER 111
>sp|Q7VBI9|ISPT_PROMA Isoprenyl transferase OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=uppS PE=3 SV=1
Length = 266
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Query: 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWV 83
+P H+A+IMDGN RWA + LP + GH AGV +L++ + LC WG+ VLTV+AFS +NW
Sbjct: 27 LPEHIAIIMDGNGRWANAKKLPRAMGHSAGVDALKQTLRLCNDWGIGVLTVYAFSTENWS 86
Query: 84 ----EVEFLMKLFEKSIKSELEGF 103
EV FLM LFE+ +K ELE
Sbjct: 87 RPKEEVNFLMTLFERVLKKELEAL 110
>sp|Q8RX73|DDPS3_ARATH Dehydrodolichyl diphosphate synthase 3 OS=Arabidopsis thaliana
GN=At5g58780 PE=2 SV=1
Length = 302
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Query: 19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
L RE MPRHVAVIMDGN RWA++ GL +S GHEAG + L E ELC + G+ ++ FAFS
Sbjct: 65 LQRELMPRHVAVIMDGNRRWAKRAGLLTSQGHEAGAKRLIEFSELCFKLGIHTVSAFAFS 124
Query: 79 YDNW----VEVEFLMKLFEKSIKSELEGFIR 105
+NW +EV+ LM L + +KS+++ F R
Sbjct: 125 TENWGRHKIEVKCLMSLIQHYLKSKIQYFQR 155
>sp|Q7U7P7|ISPT_SYNPX Isoprenyl transferase OS=Synechococcus sp. (strain WH8102) GN=uppS
PE=3 SV=1
Length = 260
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 57/86 (66%), Gaps = 4/86 (4%)
Query: 19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
L+ + +P HVAVIMDGN RWA RGLP GH AGV +L+ + LC WG+ LT +AFS
Sbjct: 21 LDGDRLPVHVAVIMDGNGRWAEARGLPRMMGHRAGVEALKSTLRLCSDWGIAALTAYAFS 80
Query: 79 YDNWV----EVEFLMKLFEKSIKSEL 100
+NW EV FLM LFE+ ++ EL
Sbjct: 81 TENWSRPGDEVNFLMTLFERVLQKEL 106
>sp|Q8XJQ9|ISPT_CLOPE Isoprenyl transferase OS=Clostridium perfringens (strain 13 / Type
A) GN=uppS PE=3 SV=1
Length = 253
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 63/84 (75%), Gaps = 4/84 (4%)
Query: 22 EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDN 81
+ MP+H+A+IMDGN RWA++RGLP + GH AGV++++ +V+ C + GVK LT++AFS +N
Sbjct: 21 DKMPKHIAIIMDGNGRWAKKRGLPRTMGHRAGVKTIKTIVKECDKLGVKYLTLYAFSTEN 80
Query: 82 WV----EVEFLMKLFEKSIKSELE 101
W EV LMKL + IK+E++
Sbjct: 81 WKRPEDEVNALMKLVVEFIKNEID 104
>sp|Q7V102|ISPT_PROMP Isoprenyl transferase OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=uppS PE=3 SV=1
Length = 272
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 60/85 (70%), Gaps = 4/85 (4%)
Query: 20 NREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSY 79
++E +P H+A+IMDGN RWA ++GLP S GH GV L+E+++ KVLTV+AFS
Sbjct: 19 DKERIPEHIAIIMDGNGRWATKKGLPRSFGHNKGVSVLKEIIKASKNIDCKVLTVYAFST 78
Query: 80 DNWV----EVEFLMKLFEKSIKSEL 100
+NW+ EV+FL+ LFEK +K E+
Sbjct: 79 ENWIRPSNEVDFLINLFEKVLKKEI 103
>sp|Q5WFT2|ISPT_BACSK Isoprenyl transferase OS=Bacillus clausii (strain KSM-K16) GN=uppS
PE=3 SV=1
Length = 257
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 64/91 (70%), Gaps = 4/91 (4%)
Query: 18 GLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAF 77
++ + +PRHVA+IMDGN RWA+++GLP AGH G++++ ++V +++LT++AF
Sbjct: 22 SIDPQNIPRHVAIIMDGNGRWAKEKGLPRIAGHREGMKTVNKIVRAANTLNIEILTLYAF 81
Query: 78 SYDNW----VEVEFLMKLFEKSIKSELEGFI 104
S +NW EVEFL+KL E+ +KSEL I
Sbjct: 82 STENWKRPKAEVEFLLKLPERYLKSELPTLI 112
>sp|Q88MH6|UPPS_PSEPK Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Pseudomonas
putida (strain KT2440) GN=uppS PE=3 SV=1
Length = 251
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 62/81 (76%), Gaps = 4/81 (4%)
Query: 23 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82
++PRHVA+IMDGN RWA++R LP AGH+AGV ++R ++E+C + GV+VLT+FAFS +NW
Sbjct: 11 SVPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAKSGVEVLTLFAFSSENW 70
Query: 83 V----EVEFLMKLFEKSIKSE 99
EV LM+LF +++ E
Sbjct: 71 QRPAEEVGALMELFFSALRRE 91
>sp|Q7VYC6|ISPT_BORPE Isoprenyl transferase OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=uppS PE=3 SV=1
Length = 254
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 60/82 (73%), Gaps = 4/82 (4%)
Query: 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW- 82
+PRHVA+IMDGN RWA +R LP +AGH GV ++R +VE C R GV+ LT+FAFS +NW
Sbjct: 15 IPRHVAIIMDGNGRWATRRHLPRTAGHAKGVHAVRRVVEACGRRGVRYLTLFAFSSENWR 74
Query: 83 ---VEVEFLMKLFEKSIKSELE 101
EV LM+LF ++++ E++
Sbjct: 75 RPADEVSLLMRLFVQALEREVD 96
>sp|Q7WA56|ISPT_BORPA Isoprenyl transferase OS=Bordetella parapertussis (strain 12822 /
ATCC BAA-587 / NCTC 13253) GN=uppS PE=3 SV=2
Length = 254
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 60/82 (73%), Gaps = 4/82 (4%)
Query: 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW- 82
+PRHVA+IMDGN RWA +R LP +AGH GV ++R +VE C R GV+ LT+FAFS +NW
Sbjct: 15 IPRHVAIIMDGNGRWATRRHLPRTAGHAKGVHAVRRVVEACGRRGVRYLTLFAFSSENWR 74
Query: 83 ---VEVEFLMKLFEKSIKSELE 101
EV LM+LF ++++ E++
Sbjct: 75 RPADEVSLLMRLFVQALEREVD 96
>sp|Q7WJ90|ISPT_BORBR Isoprenyl transferase OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=uppS PE=3 SV=2
Length = 254
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 60/82 (73%), Gaps = 4/82 (4%)
Query: 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW- 82
+PRHVA+IMDGN RWA +R LP +AGH GV ++R +VE C R GV+ LT+FAFS +NW
Sbjct: 15 IPRHVAIIMDGNGRWATRRHLPRTAGHAKGVHAVRRVVEACGRRGVRYLTLFAFSSENWR 74
Query: 83 ---VEVEFLMKLFEKSIKSELE 101
EV LM+LF ++++ E++
Sbjct: 75 RPADEVSLLMRLFVQALEREVD 96
>sp|Q9HXY2|UPPS_PSEAE Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=uppS PE=3 SV=1
Length = 251
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 61/81 (75%), Gaps = 4/81 (4%)
Query: 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWV 83
+PRHVA+IMDGN RWA++R LP AGH+AGV ++R ++E+C GV+VLT+FAFS +NW
Sbjct: 10 VPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQ 69
Query: 84 ----EVEFLMKLFEKSIKSEL 100
EV LM+LF +++ E+
Sbjct: 70 RPADEVSALMELFLVALRREV 90
>sp|Q5F5X2|ISPT_NEIG1 Isoprenyl transferase OS=Neisseria gonorrhoeae (strain ATCC 700825
/ FA 1090) GN=uppS PE=3 SV=1
Length = 248
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 60/86 (69%), Gaps = 4/86 (4%)
Query: 19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
L A+PRH+AVIMDGN RWA++R LP GH+ G+ +L +V+ C + GV+ LTVFAFS
Sbjct: 9 LEHTAIPRHIAVIMDGNGRWAKKRFLPRIMGHKRGLDALENMVKHCAKLGVQYLTVFAFS 68
Query: 79 YDNW----VEVEFLMKLFEKSIKSEL 100
+NW EV FLM LF ++++ ++
Sbjct: 69 TENWRRPEDEVSFLMGLFLQALQKQV 94
>sp|Q8RE08|ISPT_FUSNN Isoprenyl transferase OS=Fusobacterium nucleatum subsp. nucleatum
(strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
GN=uppS PE=3 SV=1
Length = 230
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 59/86 (68%), Gaps = 4/86 (4%)
Query: 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW- 82
+P+H+A+IMDGN RWA++RGL S GH G ++LR+ +E GVK LTV+AFS +NW
Sbjct: 5 IPKHIAIIMDGNGRWAKKRGLARSFGHMEGAKTLRKALEYLTEIGVKYLTVYAFSTENWN 64
Query: 83 ---VEVEFLMKLFEKSIKSELEGFIR 105
EV LMKLF K IK+E + ++
Sbjct: 65 RPQDEVSTLMKLFLKYIKNERKNMMK 90
>sp|O80458|DDPS1_ARATH Dehydrodolichyl diphosphate synthase 1 OS=Arabidopsis thaliana
GN=DPS PE=1 SV=2
Length = 303
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 55/80 (68%), Gaps = 4/80 (5%)
Query: 18 GLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAF 77
GL RE MPRHVA I+DGN RWA++ GL +S GHEAG + L ++ ELC GV ++ FAF
Sbjct: 64 GLQRELMPRHVAFILDGNRRWAKRAGLTTSQGHEAGAKRLIDIAELCFELGVHTVSAFAF 123
Query: 78 SYDNW----VEVEFLMKLFE 93
S +NW +E++ LM L +
Sbjct: 124 STENWGRDKIEIDNLMSLIQ 143
>sp|Q886N9|UPPS_PSESM Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=uppS PE=3 SV=1
Length = 251
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 60/81 (74%), Gaps = 4/81 (4%)
Query: 23 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82
++PRHVA+IMDGN RWAR+R LP AGH+AGV ++R ++E+C V+VLT+FAFS +NW
Sbjct: 11 SVPRHVAIIMDGNNRWARKRLLPGVAGHKAGVDAVRAVIEVCAEAKVEVLTLFAFSSENW 70
Query: 83 V----EVEFLMKLFEKSIKSE 99
EV LM+LF +++ E
Sbjct: 71 QRPAEEVGALMELFFTALRRE 91
>sp|Q8RA26|ISPT_THETN Isoprenyl transferase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=uppS PE=3
SV=1
Length = 247
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 61/87 (70%), Gaps = 4/87 (4%)
Query: 19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
L++ +P+HV +IMDGN RWA++RG+P GH+AGV ++RE++ C G+K LT++AFS
Sbjct: 13 LDKTRLPQHVGIIMDGNGRWAQKRGMPRVYGHKAGVNAVREVIRSCRELGIKYLTLYAFS 72
Query: 79 YDNWV----EVEFLMKLFEKSIKSELE 101
+NW EV+FLM L + + E++
Sbjct: 73 TENWKRPKEEVDFLMDLLVEYLSKEVD 99
>sp|Q9K1G6|ISPT_NEIMB Isoprenyl transferase OS=Neisseria meningitidis serogroup B (strain
MC58) GN=uppS PE=3 SV=1
Length = 248
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 60/86 (69%), Gaps = 4/86 (4%)
Query: 19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
L A+P+H+AVIMDGN RWA++R LP GH+ G+ +L +V+ C + GV+ LTVFAFS
Sbjct: 9 LEHTAIPKHIAVIMDGNGRWAKKRFLPRIMGHKRGLDALENMVKHCAKLGVQYLTVFAFS 68
Query: 79 YDNW----VEVEFLMKLFEKSIKSEL 100
+NW EV FLM LF ++++ ++
Sbjct: 69 TENWRRPEDEVSFLMGLFLQALQKQV 94
>sp|Q9JX35|ISPT_NEIMA Isoprenyl transferase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=uppS PE=3 SV=1
Length = 248
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 60/86 (69%), Gaps = 4/86 (4%)
Query: 19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
L A+P+H+AVIMDGN RWA++R LP GH+ G+ +L +V+ C + GV+ LTVFAFS
Sbjct: 9 LEHTAIPKHIAVIMDGNGRWAKKRFLPRIMGHKRGLDALENMVKHCAKLGVQYLTVFAFS 68
Query: 79 YDNW----VEVEFLMKLFEKSIKSEL 100
+NW EV FLM LF ++++ ++
Sbjct: 69 TENWRRPEDEVSFLMGLFLQALQKQV 94
>sp|P60482|ISPT_GEOSL Isoprenyl transferase OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=uppS PE=3 SV=1
Length = 246
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 59/86 (68%), Gaps = 4/86 (4%)
Query: 18 GLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAF 77
GL + +PRH+A+IMDGN RWA++R L GH+ GV ++R +VE C R G+ LT+FAF
Sbjct: 3 GLIPDKLPRHLAIIMDGNGRWAQERMLTRIIGHQKGVETVRIIVEECSRLGIGYLTLFAF 62
Query: 78 SYDNWV----EVEFLMKLFEKSIKSE 99
S +NW+ EV+ LM L +K I SE
Sbjct: 63 SAENWLRPKTEVKALMALLKKYIASE 88
>sp|Q7VH74|ISPT_HELHP Isoprenyl transferase OS=Helicobacter hepaticus (strain ATCC 51449
/ 3B1) GN=uppS PE=3 SV=1
Length = 237
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 21 REAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYD 80
+ + P+H+AVIMDGN RWA+++G + GH+ G + +R++ + C G+ LT++AFS +
Sbjct: 2 KPSYPQHIAVIMDGNGRWAKKQGKKRTQGHKEGAKIVRDITQWCAEKGIPYLTLYAFSTE 61
Query: 81 NW----VEVEFLMKLFEKSIKSELEGFIR 105
NW +EV+FLMKL EK + E +++
Sbjct: 62 NWKRPKIEVDFLMKLLEKYLHDEKPVYMK 90
>sp|Q82TZ9|ISPT_NITEU Isoprenyl transferase OS=Nitrosomonas europaea (strain ATCC 19718 /
NBRC 14298) GN=uppS PE=3 SV=1
Length = 263
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Query: 23 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82
A+P+H+A+IMDGN RWAR+R LP AGH GV ++R ++ C GV LT+FAFS +NW
Sbjct: 16 AIPKHIAIIMDGNGRWARKRFLPRIAGHTQGVEAVRGTIKACIERGVSHLTIFAFSSENW 75
Query: 83 ----VEVEFLMKLFEKSIKSELEGF 103
EV+ LM+LF +++ E+ G
Sbjct: 76 RRPAEEVKLLMQLFLAALEREVTGL 100
>sp|Q570Q8|DDPS5_ARATH Dehydrodolichyl diphosphate synthase 5 OS=Arabidopsis thaliana
GN=At5g58784 PE=2 SV=2
Length = 302
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 21 REAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYD 80
R MP+HVAVI+DGN RWA +RGL +S GHEAG R L E + C G +++FAFS +
Sbjct: 67 RNIMPKHVAVILDGNRRWAEKRGLGTSEGHEAGARRLMENAKDCFAMGTNTISLFAFSTE 126
Query: 81 NWV----EVEFLMKLFEKSIKSEL 100
NW EV+ LM LFEK + S++
Sbjct: 127 NWERPEDEVKCLMALFEKYLASDM 150
>sp|B8XA40|ZFPS_SOLHA (2Z,6Z)-farnesyl diphosphate synthase, chloroplastic OS=Solanum
habrochaites GN=ZFPS PE=1 SV=1
Length = 303
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 4/80 (5%)
Query: 19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
L+ E MP+H+A+IMDGN RWA+ +GL S GH+ L+E+ ++ + G++V+T FAFS
Sbjct: 72 LDEELMPKHIALIMDGNRRWAKDKGLDVSEGHKHLFPKLKEICDISSKLGIQVITAFAFS 131
Query: 79 YDNWV----EVEFLMKLFEK 94
+NW EV+FLM++FE+
Sbjct: 132 TENWKRAKGEVDFLMQMFEE 151
>sp|Q7NVZ0|ISPT_CHRVO Isoprenyl transferase OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=uppS PE=3 SV=1
Length = 251
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 58/80 (72%), Gaps = 4/80 (5%)
Query: 25 PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW-- 82
PRH+A+IMDGN RWA++R LP AGH+ G+ ++RE+V+ C GV LT+FAFS +NW
Sbjct: 16 PRHIAIIMDGNGRWAKKRFLPRVAGHKRGLDAVREVVKACKEMGVGYLTLFAFSTENWRR 75
Query: 83 --VEVEFLMKLFEKSIKSEL 100
EV FLM LF ++++ E+
Sbjct: 76 PQEEVSFLMDLFLRALEHEV 95
>sp|O67291|ISPT_AQUAE Isoprenyl transferase OS=Aquifex aeolicus (strain VF5) GN=uppS PE=3
SV=1
Length = 231
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 54/82 (65%), Gaps = 4/82 (4%)
Query: 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW- 82
+P HVA+IMDGN RWARQRGLP AGH G +++E C G+K LT+FAFS +NW
Sbjct: 5 LPEHVAIIMDGNGRWARQRGLPRVAGHYRGAEVAEDIIEYCIELGIKHLTLFAFSTENWN 64
Query: 83 ---VEVEFLMKLFEKSIKSELE 101
EV+ L +L E I+S+ E
Sbjct: 65 RPKEEVKALFELMENYIRSKRE 86
>sp|Q895K8|ISPT_CLOTE Isoprenyl transferase OS=Clostridium tetani (strain Massachusetts /
E88) GN=uppS PE=3 SV=1
Length = 255
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 61/86 (70%), Gaps = 4/86 (4%)
Query: 19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
L+ + +P+H+A+IMDGN RWA++R LP S GH+AGV ++R++V+ C GV+ LT++AFS
Sbjct: 21 LDLDNIPKHIAIIMDGNGRWAKERKLPRSLGHKAGVETIRDIVKECNNIGVRYLTLYAFS 80
Query: 79 YDNWV----EVEFLMKLFEKSIKSEL 100
+NW E+ LM+L ++ E+
Sbjct: 81 TENWKRPKEEINALMELLVNYLRKEV 106
>sp|O31751|ISPT_BACSU Isoprenyl transferase OS=Bacillus subtilis (strain 168) GN=uppS
PE=3 SV=1
Length = 260
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Query: 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW- 82
+P H+A+IMDGN RWA++R LP AGH G++ ++ +L GVKVLT++AFS +NW
Sbjct: 31 IPEHIAIIMDGNGRWAKKRSLPRIAGHHEGMKVVKRTTKLANELGVKVLTLYAFSTENWK 90
Query: 83 ---VEVEFLMKLFEKSIKSELEGFI 104
+EV+FLMKL E+ + + L +
Sbjct: 91 RPKMEVDFLMKLPEEFLNTYLPELV 115
>sp|C1K5M2|NDPS_SOLLC Dimethylallylcistransferase, chloroplastic OS=Solanum lycopersicum
GN=NDPS1 PE=1 SV=1
Length = 303
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 61/97 (62%), Gaps = 4/97 (4%)
Query: 2 SLNRNNVILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELV 61
SLN L L+ E MP+H+A+IMDGN RWA+ +GL GH+ + L+E+
Sbjct: 55 SLNLQTEKLCYEDNDNDLDEELMPKHIALIMDGNRRWAKDKGLEVYEGHKHIIPKLKEIC 114
Query: 62 ELCCRWGVKVLTVFAFSYDNWV----EVEFLMKLFEK 94
++ + G++++T FAFS +NW EV+FL+++FE+
Sbjct: 115 DISSKLGIQIITAFAFSTENWKRSKEEVDFLLQMFEE 151
>sp|Q6FCH1|UPPS_ACIAD Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Acinetobacter
sp. (strain ADP1) GN=uppS PE=3 SV=1
Length = 249
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 4/81 (4%)
Query: 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW- 82
+P+HVA+IMDGN R+A++ + GH G SL +VE CC GV+ LTVFAFS +NW
Sbjct: 9 LPKHVAIIMDGNNRFAKKNQMQKGDGHREGKNSLDPIVEHCCTRGVQALTVFAFSSENWN 68
Query: 83 ---VEVEFLMKLFEKSIKSEL 100
EV+ LMKL E++I +L
Sbjct: 69 RPAFEVDLLMKLLEEAIHEQL 89
>sp|Q9KA67|ISPT_BACHD Isoprenyl transferase OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=uppS PE=3
SV=1
Length = 256
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 63/93 (67%), Gaps = 4/93 (4%)
Query: 16 AGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVF 75
+ L+ A+P+HVA+IMDGN RWA+++GLP AGH G++ + ++V ++VL+++
Sbjct: 19 SHSLDESAIPKHVAIIMDGNGRWAKKKGLPRIAGHREGMKVINKIVRKAIDLKIEVLSLY 78
Query: 76 AFSYDNW----VEVEFLMKLFEKSIKSELEGFI 104
AFS +NW EV++L+KL E+ +K EL +
Sbjct: 79 AFSTENWKRPRTEVDYLLKLPERFLKLELPNLM 111
>sp|Q5ZY69|UPPS_LEGPH Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=uppS PE=3 SV=1
Length = 238
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Query: 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW- 82
+P+H+AV+MDGN RWA RGLP GH+AG+ S+++++ C + L++FAFS +NW
Sbjct: 5 LPQHIAVVMDGNGRWAESRGLPRVEGHKAGLDSVKKIINCCLEKKISCLSLFAFSSENWS 64
Query: 83 ---VEVEFLMKLFEKSIKSELEGF 103
EV FLM+LF ++++ E++
Sbjct: 65 RPVTEVNFLMELFLEALRKEIDDL 88
>sp|Q5WZ40|UPPS_LEGPL Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Legionella
pneumophila (strain Lens) GN=uppS PE=3 SV=1
Length = 238
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Query: 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW- 82
+P+H+AV+MDGN RWA RGLP GH+AG+ S+++++ C + L++FAFS +NW
Sbjct: 5 LPQHIAVVMDGNGRWAESRGLPRVEGHKAGLDSVKKIINCCLEKKISCLSLFAFSSENWS 64
Query: 83 ---VEVEFLMKLFEKSIKSELEGF 103
EV FLM+LF ++++ E++
Sbjct: 65 RPVTEVNFLMELFLEALRKEIDDL 88
>sp|Q5X7N9|UPPS_LEGPA Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Legionella
pneumophila (strain Paris) GN=uppS PE=3 SV=1
Length = 238
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 58/82 (70%), Gaps = 4/82 (4%)
Query: 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW- 82
+P+H+AV+MDGN RWA RGLP GH+AG+ S+++++ C + L++FAFS +NW
Sbjct: 5 LPQHIAVVMDGNGRWAESRGLPRVEGHKAGLDSVKKIINCCLEKKISCLSLFAFSSENWS 64
Query: 83 ---VEVEFLMKLFEKSIKSELE 101
EV FLM+LF ++++ E++
Sbjct: 65 RPVTEVNFLMELFLEALRKEID 86
>sp|Q8GDY3|ISPT_HELMO Isoprenyl transferase OS=Heliobacillus mobilis GN=uppS PE=3 SV=1
Length = 260
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 57/86 (66%), Gaps = 4/86 (4%)
Query: 19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
++ +P+H+A+IMDGN RWA++RGLP AGH AGV SLR ++E+C + + LTV+AFS
Sbjct: 24 IDPHRIPKHIAIIMDGNGRWAKRRGLPRVAGHRAGVESLRRVLEVCEDYNIAYLTVYAFS 83
Query: 79 YDNWV----EVEFLMKLFEKSIKSEL 100
+NW EV L L + + EL
Sbjct: 84 TENWKRPADEVNALFDLLVEYLHREL 109
>sp|Q5L0J8|ISPT_GEOKA Isoprenyl transferase OS=Geobacillus kaustophilus (strain HTA426)
GN=uppS PE=3 SV=1
Length = 257
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 21 REAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYD 80
R MP HVA+IMDGN RWA++R LP +AGH G++ +R++ G+++L+++AFS +
Sbjct: 22 RHPMPNHVAIIMDGNGRWAKKRALPRAAGHYEGMQVVRKITRFANELGIQILSLYAFSTE 81
Query: 81 NW----VEVEFLMKLFEKSIKSELEGFI 104
NW EV++LMKL E+ + + L +
Sbjct: 82 NWKRPKSEVDYLMKLPEQFLTTFLPELV 109
>sp|Q83BV5|UPPS_COXBU Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Coxiella
burnetii (strain RSA 493 / Nine Mile phase I) GN=uppS
PE=3 SV=1
Length = 237
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 54/82 (65%), Gaps = 4/82 (4%)
Query: 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDN-- 81
+PRHVA++MDGN RWA +RGLP AGH AG + +R +VE ++VLT+FAFS +N
Sbjct: 2 IPRHVAIVMDGNGRWANRRGLPRVAGHRAGAKVVRRIVEYAAEKPLEVLTLFAFSIENRA 61
Query: 82 --WVEVEFLMKLFEKSIKSELE 101
EV FLM LF S+K E
Sbjct: 62 RPQSEVNFLMSLFLDSLKKNTE 83
>sp|Q97I62|ISPT_CLOAB Isoprenyl transferase OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=uppS PE=3 SV=1
Length = 257
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Query: 14 GVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLT 73
G +N +P+H+A+IMDGN RWA++R LP + GH+AG +L+ +V C GVK LT
Sbjct: 14 GNDNDINFSNIPKHIAIIMDGNGRWAKKRNLPRTMGHKAGGEALKRIVRECSDIGVKYLT 73
Query: 74 VFAFSYDNWV----EVEFLMKLFEKSIKSEL 100
V+ FS +NW+ EV +M+L + +K E
Sbjct: 74 VYGFSTENWIRPKEEVNAIMRLIVEFLKREF 104
>sp|Q8YHH3|ISPT_BRUME Isoprenyl transferase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=uppS PE=3 SV=1
Length = 254
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 25 PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWV- 83
PRH+A+IMDGN RWA+ RGLP SAGH AGV +LRE+V G+ LT+FAFS +NW
Sbjct: 4 PRHIAIIMDGNGRWAKARGLPRSAGHRAGVEALREIVRAAGDRGLGYLTLFAFSSENWTR 63
Query: 84 ---EVEFLMKLFEKSIKSEL 100
EV L+ L + I+ +L
Sbjct: 64 PSGEVSDLLGLLKLFIRRDL 83
>sp|Q57CY1|ISPT_BRUAB Isoprenyl transferase OS=Brucella abortus biovar 1 (strain 9-941)
GN=uppS PE=3 SV=1
Length = 254
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 25 PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWV- 83
PRH+A+IMDGN RWA+ RGLP SAGH AGV +LRE+V G+ LT+FAFS +NW
Sbjct: 4 PRHIAIIMDGNGRWAKARGLPRSAGHRAGVEALREIVRAAGDRGLGYLTLFAFSSENWTR 63
Query: 84 ---EVEFLMKLFEKSIKSEL 100
EV L+ L + I+ +L
Sbjct: 64 PSGEVSDLLGLLKLFIRRDL 83
>sp|Q8G0D9|ISPT_BRUSU Isoprenyl transferase OS=Brucella suis biovar 1 (strain 1330)
GN=uppS PE=3 SV=1
Length = 254
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 25 PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWV- 83
PRH+A+IMDGN RWA+ RGLP SAGH AGV +LRE+V G+ LT+FAFS +NW
Sbjct: 4 PRHIAIIMDGNGRWAKARGLPRSAGHRAGVEALREIVRAAGDRGLGYLTLFAFSSENWTR 63
Query: 84 ---EVEFLMKLFEKSIKSEL 100
EV L+ L + I+ +L
Sbjct: 64 PSGEVSDLLGLLKLFIRRDL 83
>sp|Q47RM6|DPDP_THEFY Trans,polycis-polyprenyl diphosphate synthase ((2Z,6E)-farnesyl
diphosphate specific) OS=Thermobifida fusca (strain YX)
GN=Tfu_0853 PE=1 SV=1
Length = 282
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 13 GGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVL 72
G L RE +PRHVA++MDGN RWA+QRGLP + GH+AG SL +++E GV L
Sbjct: 24 GARPPQLPRELIPRHVAIVMDGNGRWAKQRGLPRTEGHKAGESSLFDVIEGALELGVPYL 83
Query: 73 TVFAFSYDNWV----EVEFLM 89
+ +AFS +NW EV FLM
Sbjct: 84 SAYAFSTENWKRSPDEVRFLM 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,087,330
Number of Sequences: 539616
Number of extensions: 1286203
Number of successful extensions: 4311
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4031
Number of HSP's gapped (non-prelim): 218
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)