Query 045812
Match_columns 105
No_of_seqs 107 out of 1024
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 05:45:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14837 undecaprenyl pyrophos 100.0 4.2E-38 9.1E-43 244.2 11.2 85 20-104 2-90 (230)
2 PRK14831 undecaprenyl pyrophos 100.0 6.1E-38 1.3E-42 245.1 10.6 95 10-104 6-104 (249)
3 PRK14842 undecaprenyl pyrophos 100.0 1.1E-37 2.4E-42 243.0 11.1 86 19-104 3-92 (241)
4 PRK14832 undecaprenyl pyrophos 100.0 1.2E-37 2.6E-42 244.3 11.3 89 16-104 10-102 (253)
5 PTZ00349 dehydrodolichyl dipho 100.0 1.3E-37 2.8E-42 251.1 11.7 92 8-99 3-98 (322)
6 PRK14829 undecaprenyl pyrophos 100.0 1.5E-37 3.2E-42 242.1 11.2 87 17-103 7-97 (243)
7 PRK14827 undecaprenyl pyrophos 100.0 2.2E-37 4.9E-42 247.3 10.7 96 9-104 52-151 (296)
8 PRK14833 undecaprenyl pyrophos 100.0 3E-37 6.6E-42 239.4 10.6 83 22-104 2-88 (233)
9 PRK14841 undecaprenyl pyrophos 100.0 3.1E-37 6.8E-42 239.3 10.6 82 23-104 2-87 (233)
10 PRK14840 undecaprenyl pyrophos 100.0 4.6E-37 9.9E-42 240.7 11.2 92 13-104 7-106 (250)
11 PRK14828 undecaprenyl pyrophos 100.0 8.1E-37 1.8E-41 239.5 12.2 92 9-100 11-107 (256)
12 PRK14834 undecaprenyl pyrophos 100.0 6.1E-37 1.3E-41 239.7 11.5 87 17-103 7-97 (249)
13 PRK14835 undecaprenyl pyrophos 100.0 8.3E-37 1.8E-41 241.8 12.0 93 9-101 26-122 (275)
14 PRK14838 undecaprenyl pyrophos 100.0 1.1E-36 2.3E-41 237.5 10.7 82 18-99 4-89 (242)
15 cd00475 CIS_IPPS Cis (Z)-Isopr 100.0 1.3E-36 2.7E-41 234.2 10.5 80 25-104 1-84 (221)
16 PRK14836 undecaprenyl pyrophos 100.0 8.8E-37 1.9E-41 239.1 9.5 90 15-104 5-98 (253)
17 PRK14839 undecaprenyl pyrophos 100.0 3.7E-36 8E-41 234.5 10.5 82 23-104 8-93 (239)
18 PRK14830 undecaprenyl pyrophos 100.0 5.9E-36 1.3E-40 234.1 10.9 87 17-103 15-105 (251)
19 TIGR00055 uppS undecaprenyl di 100.0 7E-36 1.5E-40 231.1 10.2 79 26-104 1-83 (226)
20 KOG1602 Cis-prenyltransferase 100.0 3.9E-35 8.5E-40 231.4 10.8 85 18-102 30-118 (271)
21 COG0020 UppS Undecaprenyl pyro 100.0 3E-31 6.5E-36 207.3 10.2 82 23-104 15-100 (245)
22 PF01255 Prenyltransf: Putativ 100.0 9.6E-31 2.1E-35 200.1 9.7 73 31-103 1-77 (223)
23 PRK10240 undecaprenyl pyrophos 100.0 1E-29 2.2E-34 196.9 9.2 73 32-104 1-77 (229)
24 PF02739 5_3_exonuc_N: 5'-3' e 86.5 4 8.6E-05 30.1 6.8 69 24-98 50-123 (169)
25 PF04055 Radical_SAM: Radical 83.5 5.5 0.00012 26.4 5.9 40 53-92 125-166 (166)
26 PF01261 AP_endonuc_2: Xylose 82.4 9.8 0.00021 26.6 7.1 28 50-77 66-93 (213)
27 PF02195 ParBc: ParB-like nucl 75.8 11 0.00025 23.7 5.3 31 27-80 47-77 (90)
28 cd00008 53EXOc 5'-3' exonuclea 74.8 4.9 0.00011 31.0 3.9 78 10-94 36-118 (240)
29 PF13302 Acetyltransf_3: Acety 72.0 5.5 0.00012 26.2 3.2 35 47-82 95-130 (142)
30 KOG2818 Predicted undecaprenyl 72.0 1.7 3.6E-05 35.1 0.8 46 21-78 61-106 (263)
31 PF01661 Macro: Macro domain; 72.0 24 0.00052 22.9 7.4 58 25-89 55-118 (118)
32 PRK13210 putative L-xylulose 5 71.8 27 0.00058 26.3 7.3 28 50-77 89-116 (284)
33 PLN02706 glucosamine 6-phospha 71.5 4.9 0.00011 27.2 2.9 34 47-81 97-130 (150)
34 PRK09856 fructoselysine 3-epim 71.1 32 0.00069 25.9 7.5 29 49-77 84-112 (275)
35 TIGR02109 PQQ_syn_pqqE coenzym 70.5 15 0.00032 29.2 5.8 63 26-94 107-171 (358)
36 PF13420 Acetyltransf_4: Acety 67.8 7.3 0.00016 26.3 3.2 33 49-82 90-123 (155)
37 PF13456 RVT_3: Reverse transc 67.2 12 0.00026 22.8 3.8 29 51-79 3-31 (87)
38 smart00470 ParB ParB-like nucl 66.1 8.6 0.00019 24.6 3.1 12 29-40 48-59 (89)
39 PRK10146 aminoalkylphosphonic 64.6 8.1 0.00018 25.6 2.8 35 46-81 87-121 (144)
40 PRK05301 pyrroloquinoline quin 64.4 27 0.00059 28.0 6.3 62 25-92 115-178 (378)
41 PRK13758 anaerobic sulfatase-m 63.7 21 0.00046 28.4 5.5 64 27-93 118-182 (370)
42 COG0635 HemN Coproporphyrinoge 62.7 28 0.00061 29.2 6.2 45 54-98 203-263 (416)
43 PRK13907 rnhA ribonuclease H; 62.5 19 0.00041 24.4 4.4 31 49-79 41-71 (128)
44 PF08901 DUF1847: Protein of u 61.7 4.6 0.0001 30.4 1.3 58 33-92 20-77 (157)
45 PRK09482 flap endonuclease-lik 61.4 8.6 0.00019 30.6 2.8 62 10-73 33-102 (256)
46 PF04392 ABC_sub_bind: ABC tra 61.4 46 0.00099 25.7 6.9 44 25-82 131-174 (294)
47 cd04301 NAT_SF N-Acyltransfera 61.3 10 0.00022 20.3 2.4 27 48-74 38-64 (65)
48 PF02585 PIG-L: GlcNAc-PI de-N 60.9 29 0.00062 23.3 5.1 73 23-101 25-101 (128)
49 PF00583 Acetyltransf_1: Acety 60.1 12 0.00026 22.3 2.8 34 48-82 38-71 (83)
50 PRK03624 putative acetyltransf 59.9 15 0.00033 23.6 3.4 36 45-81 78-113 (140)
51 cd02905 Macro_GDAP2_like Macro 58.7 55 0.0012 23.3 6.4 29 54-82 93-121 (140)
52 COG0678 AHP1 Peroxiredoxin [Po 58.1 6.8 0.00015 29.7 1.7 20 27-46 99-118 (165)
53 PRK13209 L-xylulose 5-phosphat 57.7 64 0.0014 24.4 7.0 29 49-77 93-121 (283)
54 TIGR02629 L_rham_iso_rhiz L-rh 56.8 10 0.00022 32.5 2.7 55 23-77 88-172 (412)
55 COG1670 RimL Acetyltransferase 56.4 17 0.00037 24.4 3.4 34 48-82 108-142 (187)
56 PLN03044 GTP cyclohydrolase I; 56.2 12 0.00025 28.7 2.7 25 26-64 87-111 (188)
57 cd00019 AP2Ec AP endonuclease 56.1 63 0.0014 24.5 6.8 33 47-79 77-109 (279)
58 TIGR02382 wecD_rffC TDP-D-fuco 55.8 15 0.00032 26.5 3.1 37 45-82 133-169 (191)
59 cd01461 vWA_interalpha_trypsin 55.2 43 0.00093 22.8 5.3 46 24-80 1-48 (171)
60 PF15603 Imm45: Immunity prote 54.6 15 0.00033 24.6 2.8 28 71-98 36-74 (82)
61 PRK10809 ribosomal-protein-S5- 54.4 15 0.00033 26.1 2.9 34 48-82 116-150 (194)
62 TIGR00063 folE GTP cyclohydrol 54.2 11 0.00024 28.5 2.3 24 26-64 82-105 (180)
63 PF14871 GHL6: Hypothetical gl 54.1 19 0.0004 25.7 3.3 28 55-82 44-71 (132)
64 TIGR00513 accA acetyl-CoA carb 54.0 17 0.00037 29.9 3.5 26 50-75 133-158 (316)
65 PRK12319 acetyl-CoA carboxylas 53.5 18 0.00039 28.7 3.4 27 49-75 79-105 (256)
66 PRK09347 folE GTP cyclohydrola 53.5 13 0.00029 28.3 2.7 25 26-65 90-114 (188)
67 cd02908 Macro_Appr_pase_like M 52.8 54 0.0012 23.5 5.7 45 54-98 91-140 (165)
68 PRK15025 ureidoglycolate dehyd 52.7 60 0.0013 26.9 6.5 60 7-76 48-113 (349)
69 cd00642 GTP_cyclohydro1 GTP cy 51.4 12 0.00027 28.4 2.2 25 26-65 87-111 (185)
70 PF02472 ExbD: Biopolymer tran 51.2 57 0.0012 21.8 5.3 48 11-74 78-125 (130)
71 PRK05724 acetyl-CoA carboxylas 50.8 21 0.00045 29.5 3.5 26 50-75 133-158 (319)
72 smart00729 Elp3 Elongator prot 50.4 63 0.0014 22.1 5.5 40 54-93 135-177 (216)
73 TIGR03470 HpnH hopanoid biosyn 49.7 77 0.0017 25.3 6.6 63 26-93 125-188 (318)
74 PRK10140 putative acetyltransf 49.6 23 0.0005 23.7 3.1 35 47-82 90-125 (162)
75 PLN03230 acetyl-coenzyme A car 49.3 26 0.00056 30.3 3.9 49 26-75 178-228 (431)
76 TIGR00542 hxl6Piso_put hexulos 49.3 86 0.0019 23.8 6.5 29 48-76 87-115 (279)
77 TIGR03581 EF_0839 conserved hy 49.2 29 0.00062 27.8 3.9 41 53-93 187-235 (236)
78 PF03161 LAGLIDADG_2: LAGLIDAD 49.0 25 0.00055 25.6 3.4 41 57-97 106-151 (178)
79 PRK13260 2,3-diketo-L-gulonate 48.9 67 0.0014 26.4 6.2 60 7-76 48-113 (332)
80 TIGR03175 AllD ureidoglycolate 48.3 70 0.0015 26.5 6.3 60 7-76 48-113 (349)
81 COG1903 CbiD Cobalamin biosynt 48.2 60 0.0013 27.5 5.9 69 10-78 186-257 (367)
82 COG3981 Predicted acetyltransf 48.0 38 0.00082 25.9 4.3 33 49-82 111-143 (174)
83 PF01227 GTP_cyclohydroI: GTP 47.8 12 0.00027 28.3 1.7 25 26-65 82-106 (179)
84 smart00518 AP2Ec AP endonuclea 47.1 1.1E+02 0.0024 22.9 6.8 29 48-76 77-105 (273)
85 PRK10975 TDP-fucosamine acetyl 46.8 28 0.00061 25.0 3.4 37 45-82 136-172 (194)
86 TIGR03249 KdgD 5-dehydro-4-deo 46.5 35 0.00076 26.8 4.1 45 54-98 25-73 (296)
87 COG4226 HicB Predicted nucleas 46.4 28 0.0006 24.9 3.1 30 43-72 37-66 (111)
88 cd06222 RnaseH RNase H (RNase 46.2 38 0.00083 20.8 3.6 31 49-79 41-71 (130)
89 cd00408 DHDPS-like Dihydrodipi 44.9 70 0.0015 24.5 5.5 44 54-97 17-64 (281)
90 CHL00198 accA acetyl-CoA carbo 44.7 29 0.00062 28.7 3.5 27 49-75 135-161 (322)
91 PF13300 DUF4078: Domain of un 44.7 34 0.00074 23.2 3.3 27 72-98 33-62 (88)
92 TIGR00333 nrdI ribonucleoside- 44.6 1.1E+02 0.0024 21.6 6.5 59 26-99 64-122 (125)
93 cd02907 Macro_Af1521_BAL_like 44.5 92 0.002 22.4 5.8 45 54-98 98-147 (175)
94 PF09314 DUF1972: Domain of un 44.1 51 0.0011 24.9 4.5 41 26-78 2-43 (185)
95 COG0328 RnhA Ribonuclease HI [ 43.9 47 0.001 24.7 4.2 56 23-78 16-72 (154)
96 COG0641 AslB Arylsulfatase reg 43.7 59 0.0013 27.1 5.2 66 27-95 116-182 (378)
97 TIGR03822 AblA_like_2 lysine-2 43.5 1.1E+02 0.0025 24.4 6.7 40 54-93 213-255 (321)
98 TIGR02493 PFLA pyruvate format 43.2 1E+02 0.0022 22.7 6.0 41 54-94 142-185 (235)
99 COG0302 FolE GTP cyclohydrolas 43.1 22 0.00047 27.7 2.4 23 26-63 96-118 (195)
100 PRK10098 putative dehydrogenas 42.8 92 0.002 25.8 6.2 60 7-76 52-117 (350)
101 TIGR00538 hemN oxygen-independ 42.8 91 0.002 26.0 6.2 26 53-78 216-241 (455)
102 TIGR00674 dapA dihydrodipicoli 42.5 47 0.001 25.8 4.2 45 54-98 18-66 (285)
103 COG0854 PdxJ Pyridoxal phospha 42.4 45 0.00097 26.8 4.1 50 23-77 83-132 (243)
104 PF00289 CPSase_L_chain: Carba 42.3 29 0.00064 23.8 2.7 23 57-79 14-36 (110)
105 PRK12606 GTP cyclohydrolase I; 42.2 25 0.00055 27.2 2.6 24 26-64 102-125 (201)
106 smart00586 ZnF_DBF Zinc finger 42.2 11 0.00024 23.1 0.5 19 75-93 30-48 (49)
107 PF02661 Fic: Fic/DOC family; 42.0 9.2 0.0002 24.0 0.2 9 32-40 82-90 (97)
108 PRK07238 bifunctional RNase H/ 41.9 81 0.0018 25.4 5.6 53 24-78 16-74 (372)
109 COG2055 Malate/L-lactate dehyd 41.7 1.1E+02 0.0025 25.6 6.5 59 8-76 52-116 (349)
110 TIGR02804 ExbD_2 TonB system t 41.2 39 0.00084 23.1 3.2 21 54-74 97-117 (121)
111 TIGR00377 ant_ant_sig anti-ant 41.0 49 0.0011 21.2 3.5 64 3-79 22-85 (108)
112 PTZ00484 GTP cyclohydrolase I; 41.0 22 0.00047 28.6 2.1 24 26-64 161-184 (259)
113 PRK13745 anaerobic sulfatase-m 40.9 1.7E+02 0.0036 24.1 7.4 64 27-94 127-192 (412)
114 PRK03170 dihydrodipicolinate s 40.6 91 0.002 24.2 5.6 45 54-98 21-69 (292)
115 PF00701 DHDPS: Dihydrodipicol 40.6 82 0.0018 24.3 5.3 44 54-97 21-68 (289)
116 PRK05799 coproporphyrinogen II 39.9 99 0.0021 24.8 5.8 28 53-80 164-191 (374)
117 PRK12928 lipoyl synthase; Prov 39.8 27 0.00059 27.8 2.6 31 49-79 213-243 (290)
118 COG1040 ComFC Predicted amidop 39.6 80 0.0017 24.2 5.1 40 23-78 182-221 (225)
119 PF11348 DUF3150: Protein of u 39.5 76 0.0016 25.1 5.0 50 53-102 53-103 (257)
120 cd06253 M14_ASTE_ASPA_like_3 A 39.5 63 0.0014 25.7 4.6 73 26-98 130-207 (298)
121 smart00633 Glyco_10 Glycosyl h 39.2 97 0.0021 23.6 5.5 47 54-100 15-67 (254)
122 PF06415 iPGM_N: BPG-independe 39.1 84 0.0018 24.6 5.1 39 26-78 30-69 (223)
123 PF02615 Ldh_2: Malate/L-lacta 39.0 76 0.0016 26.0 5.1 60 7-76 48-113 (335)
124 PRK05301 pyrroloquinoline quin 38.9 1.4E+02 0.003 24.0 6.5 26 52-77 166-191 (378)
125 cd01463 vWA_VGCC_like VWA Volt 38.6 1.1E+02 0.0025 21.8 5.5 49 21-80 9-59 (190)
126 PF01039 Carboxyl_trans: Carbo 38.5 45 0.00097 28.5 3.8 49 49-99 310-363 (493)
127 PRK08207 coproporphyrinogen II 38.3 94 0.002 26.7 5.7 47 52-98 333-394 (488)
128 TIGR01766 tspaseT_teng_C trans 37.9 64 0.0014 20.2 3.7 28 49-76 50-78 (82)
129 PF01048 PNP_UDP_1: Phosphoryl 37.9 1E+02 0.0022 22.4 5.2 77 22-104 139-233 (234)
130 PF05673 DUF815: Protein of un 37.6 58 0.0013 26.1 4.1 79 7-90 123-208 (249)
131 TIGR00539 hemN_rel putative ox 37.4 1.1E+02 0.0024 24.5 5.8 27 53-79 165-191 (360)
132 PF11432 DUF3197: Protein of u 37.0 1.6E+02 0.0034 21.1 5.8 64 18-82 7-86 (113)
133 cd00003 PNPsynthase Pyridoxine 37.0 70 0.0015 25.4 4.4 50 24-78 83-132 (234)
134 PRK07922 N-acetylglutamate syn 37.0 45 0.00097 23.8 3.1 35 47-82 82-116 (169)
135 COG0329 DapA Dihydrodipicolina 36.9 71 0.0015 25.5 4.5 46 54-99 24-73 (299)
136 cd00014 CH Calponin homology d 36.8 83 0.0018 20.0 4.1 27 53-82 60-86 (107)
137 PF01740 STAS: STAS domain; I 36.5 60 0.0013 21.2 3.5 61 3-72 19-84 (117)
138 TIGR03448 mycothiol_MshD mycot 35.9 45 0.00098 25.1 3.2 37 45-82 236-272 (292)
139 PRK14976 5'-3' exonuclease; Pr 35.8 17 0.00037 28.9 0.8 76 11-94 42-123 (281)
140 TIGR00539 hemN_rel putative ox 35.7 1.1E+02 0.0023 24.6 5.4 39 54-92 135-176 (360)
141 PRK09249 coproporphyrinogen II 35.6 1.1E+02 0.0024 25.5 5.7 26 53-78 216-241 (453)
142 PRK04147 N-acetylneuraminate l 35.4 1.1E+02 0.0025 23.8 5.4 45 54-98 23-72 (293)
143 PF04928 PAP_central: Poly(A) 35.4 25 0.00054 27.8 1.7 32 36-67 117-149 (254)
144 PF07972 Flavodoxin_NdrI: NrdI 35.4 35 0.00076 24.3 2.3 39 26-78 73-111 (122)
145 PRK13361 molybdenum cofactor b 35.3 1.6E+02 0.0034 23.4 6.3 41 54-94 139-181 (329)
146 COG1246 ArgA N-acetylglutamate 35.3 28 0.00061 26.0 1.9 59 22-80 49-111 (153)
147 cd02903 Macro_BAL_like Macro d 35.2 81 0.0018 22.0 4.2 27 56-82 93-119 (137)
148 COG2120 Uncharacterized protei 35.2 1.4E+02 0.003 22.9 5.7 64 24-94 39-107 (237)
149 PLN02417 dihydrodipicolinate s 35.1 74 0.0016 24.8 4.3 45 54-98 21-69 (280)
150 PF02219 MTHFR: Methylenetetra 35.1 1.6E+02 0.0035 23.0 6.2 65 23-90 200-284 (287)
151 cd01475 vWA_Matrilin VWA_Matri 35.0 80 0.0017 23.4 4.3 12 24-35 108-119 (224)
152 TIGR02803 ExbD_1 TonB system t 34.6 61 0.0013 22.1 3.4 21 54-74 98-118 (122)
153 PRK11024 colicin uptake protei 34.6 58 0.0013 22.9 3.4 21 54-74 116-136 (141)
154 PRK08898 coproporphyrinogen II 34.5 1E+02 0.0023 25.2 5.3 46 53-98 186-244 (394)
155 PRK00431 RNase III inhibitor; 34.4 1.4E+02 0.0031 21.4 5.5 42 55-96 99-145 (177)
156 COG0825 AccA Acetyl-CoA carbox 34.2 61 0.0013 27.0 3.8 39 33-75 119-157 (317)
157 PRK10151 ribosomal-protein-L7/ 34.1 61 0.0013 22.6 3.4 36 46-82 103-139 (179)
158 PRK04143 hypothetical protein; 34.0 1.4E+02 0.0031 23.8 5.8 44 55-98 187-235 (264)
159 PF13289 SIR2_2: SIR2-like dom 33.9 1E+02 0.0023 20.4 4.4 33 2-35 95-127 (143)
160 TIGR02801 tolR TolR protein. T 33.9 62 0.0013 22.1 3.3 21 54-74 106-126 (129)
161 PRK13347 coproporphyrinogen II 33.7 1.5E+02 0.0033 24.7 6.2 26 53-78 217-242 (453)
162 cd00950 DHDPS Dihydrodipicolin 33.6 1.4E+02 0.003 22.9 5.6 44 54-97 20-67 (284)
163 COG0535 Predicted Fe-S oxidore 33.6 2.1E+02 0.0046 21.7 7.5 63 26-94 120-184 (347)
164 PRK06294 coproporphyrinogen II 33.5 1.5E+02 0.0032 24.1 6.0 28 53-80 168-195 (370)
165 PRK12677 xylose isomerase; Pro 33.4 71 0.0015 26.5 4.2 25 51-75 110-134 (384)
166 smart00729 Elp3 Elongator prot 33.4 73 0.0016 21.8 3.7 28 52-79 164-191 (216)
167 cd01481 vWA_collagen_alpha3-VI 33.2 1.1E+02 0.0024 21.8 4.7 46 23-88 105-152 (165)
168 PRK09997 hydroxypyruvate isome 33.2 1.7E+02 0.0036 22.0 5.9 22 55-76 85-106 (258)
169 PF13361 UvrD_C: UvrD-like hel 33.1 1.7E+02 0.0036 21.8 5.8 54 22-97 74-130 (351)
170 PLN02820 3-methylcrotonyl-CoA 32.9 57 0.0012 28.8 3.6 46 51-98 384-434 (569)
171 PRK02551 flavoprotein NrdI; Pr 32.6 2E+02 0.0044 21.1 6.5 56 27-97 96-151 (154)
172 TIGR02635 RhaI_grampos L-rhamn 32.3 73 0.0016 26.7 4.1 40 36-75 75-136 (378)
173 cd02904 Macro_H2A_like Macro d 32.2 1.7E+02 0.0036 22.2 5.7 45 54-98 113-162 (186)
174 TIGR01575 rimI ribosomal-prote 32.0 64 0.0014 20.4 3.0 30 49-78 68-97 (131)
175 PRK06267 hypothetical protein; 31.9 41 0.00088 27.3 2.4 23 56-78 183-205 (350)
176 cd01450 vWFA_subfamily_ECM Von 31.8 1.2E+02 0.0027 19.9 4.5 47 23-85 102-148 (161)
177 cd07943 DRE_TIM_HOA 4-hydroxy- 31.8 94 0.002 23.9 4.4 20 55-75 112-131 (263)
178 smart00475 53EXOc 5'-3' exonuc 31.6 1.6E+02 0.0034 23.1 5.7 76 11-94 36-117 (259)
179 PRK05481 lipoyl synthase; Prov 31.6 41 0.00089 26.6 2.4 26 54-79 210-235 (289)
180 cd06424 UGGPase UGGPase cataly 31.6 41 0.00088 27.6 2.4 65 3-82 82-154 (315)
181 PRK07094 biotin synthase; Prov 31.5 28 0.0006 27.3 1.4 40 54-93 164-205 (323)
182 PRK08446 coproporphyrinogen II 31.5 60 0.0013 26.1 3.3 27 53-79 163-189 (350)
183 COG1717 RPL32 Ribosomal protei 31.5 59 0.0013 23.9 3.0 25 48-72 102-126 (133)
184 PRK08208 coproporphyrinogen II 31.5 1.6E+02 0.0034 24.5 5.9 26 53-78 206-231 (430)
185 cd04908 ACT_Bt0572_1 N-termina 31.3 1.1E+02 0.0023 18.3 3.8 26 56-81 14-39 (66)
186 PLN03229 acetyl-coenzyme A car 31.2 60 0.0013 30.0 3.6 28 49-76 223-250 (762)
187 PF03740 PdxJ: Pyridoxal phosp 31.2 77 0.0017 25.3 3.8 49 25-78 85-133 (239)
188 PF03960 ArsC: ArsC family; I 30.9 91 0.002 20.7 3.7 42 52-94 4-47 (110)
189 KOG0081 GTPase Rab27, small G 30.7 2E+02 0.0044 22.4 5.9 44 56-99 143-187 (219)
190 PF01527 HTH_Tnp_1: Transposas 30.5 4.9 0.00011 24.7 -2.5 39 34-75 3-41 (76)
191 PRK01060 endonuclease IV; Prov 30.5 1.1E+02 0.0024 23.1 4.5 29 48-76 82-110 (281)
192 PRK10245 adrA diguanylate cycl 30.5 1.6E+02 0.0034 23.8 5.6 54 44-97 250-312 (366)
193 PF06962 rRNA_methylase: Putat 30.2 53 0.0011 24.0 2.6 34 48-81 94-127 (140)
194 PRK05660 HemN family oxidoredu 30.2 1.6E+02 0.0035 23.9 5.7 28 53-80 172-199 (378)
195 cd04703 Asparaginase_2_like A 30.2 50 0.0011 26.3 2.6 34 5-45 89-122 (246)
196 PRK11267 biopolymer transport 30.1 76 0.0017 22.4 3.4 21 54-74 112-132 (141)
197 PF08433 KTI12: Chromatin asso 30.1 78 0.0017 25.0 3.7 37 28-79 72-108 (270)
198 COG0041 PurE Phosphoribosylcar 29.6 84 0.0018 23.8 3.6 31 27-73 4-34 (162)
199 PF05762 VWA_CoxE: VWA domain 29.2 1.4E+02 0.0031 22.4 4.9 47 23-82 55-101 (222)
200 TIGR00683 nanA N-acetylneurami 29.2 96 0.0021 24.4 4.1 45 54-98 20-69 (290)
201 COG1475 Spo0J Stage 0 sporulat 29.1 47 0.001 24.4 2.2 11 30-40 51-61 (240)
202 TIGR00593 pola DNA polymerase 29.0 94 0.002 28.9 4.5 80 8-95 33-118 (887)
203 TIGR02666 moaA molybdenum cofa 28.9 2.4E+02 0.0052 22.2 6.3 63 25-93 113-179 (334)
204 TIGR01658 EYA-cons_domain eyes 28.7 2.9E+02 0.0062 22.7 6.7 48 35-82 21-91 (274)
205 TIGR02406 ectoine_EctA L-2,4-d 28.7 87 0.0019 21.8 3.4 37 45-82 76-112 (157)
206 PTZ00330 acetyltransferase; Pr 28.6 63 0.0014 21.3 2.6 32 45-76 92-123 (147)
207 TIGR00639 PurN phosphoribosylg 28.6 1.7E+02 0.0036 21.9 5.1 62 17-78 19-89 (190)
208 COG4887 Uncharacterized metal- 28.4 68 0.0015 24.6 3.0 42 55-97 52-93 (191)
209 TIGR03234 OH-pyruv-isom hydrox 28.4 2.3E+02 0.005 21.0 5.9 26 52-77 81-106 (254)
210 PF03288 Pox_D5: Poxvirus D5 p 28.4 49 0.0011 20.9 1.9 28 59-90 30-58 (86)
211 PRK07379 coproporphyrinogen II 27.9 2E+02 0.0043 23.7 5.8 46 53-98 180-242 (400)
212 PF13527 Acetyltransf_9: Acety 27.8 72 0.0016 20.6 2.7 33 46-78 83-115 (127)
213 PRK05628 coproporphyrinogen II 27.6 88 0.0019 25.2 3.7 27 53-79 173-199 (375)
214 PF00682 HMGL-like: HMGL-like 27.6 2.2E+02 0.0047 21.1 5.6 50 25-82 81-131 (237)
215 PLN02538 2,3-bisphosphoglycera 27.4 1.4E+02 0.003 26.7 5.0 38 27-78 130-168 (558)
216 PRK09966 putative inner membra 27.4 2.2E+02 0.0048 22.4 5.9 39 44-82 292-330 (407)
217 PF13686 DrsE_2: DsrE/DsrF/Drs 27.4 56 0.0012 23.7 2.3 26 50-78 86-111 (148)
218 PRK09491 rimI ribosomal-protei 27.2 80 0.0017 21.1 3.0 35 46-81 74-108 (146)
219 cd01473 vWA_CTRP CTRP for CS 27.2 1.1E+02 0.0024 22.4 3.9 13 23-35 107-119 (192)
220 PF10566 Glyco_hydro_97: Glyco 27.1 56 0.0012 26.3 2.4 61 36-96 79-147 (273)
221 cd02252 nylC_like nylC-like fa 26.9 96 0.0021 25.0 3.7 28 73-100 224-256 (260)
222 PRK10886 DnaA initiator-associ 26.8 1.3E+02 0.0028 22.7 4.2 52 11-78 95-146 (196)
223 TIGR01699 XAPA xanthosine phos 26.8 2.7E+02 0.0058 21.9 6.2 52 53-105 188-248 (248)
224 TIGR02219 phage_NlpC_fam putat 26.6 55 0.0012 22.9 2.1 12 24-35 92-103 (134)
225 PF13358 DDE_3: DDE superfamil 26.5 40 0.00087 22.0 1.3 72 9-98 63-136 (146)
226 PLN02937 Putative isoaspartyl 26.4 71 0.0015 27.3 3.1 40 5-44 108-150 (414)
227 PRK14334 (dimethylallyl)adenos 26.3 3.2E+02 0.0069 22.8 6.8 25 54-78 303-327 (440)
228 cd00951 KDGDH 5-dehydro-4-deox 26.3 2.1E+02 0.0046 22.3 5.5 44 54-97 20-67 (289)
229 PF04028 DUF374: Domain of unk 26.2 84 0.0018 20.4 2.8 29 4-36 42-70 (74)
230 cd03032 ArsC_Spx Arsenate Redu 26.2 76 0.0016 21.4 2.7 40 52-92 8-49 (115)
231 PRK05265 pyridoxine 5'-phospha 26.2 1.5E+02 0.0032 23.7 4.6 50 24-78 86-135 (239)
232 PF00150 Cellulase: Cellulase 26.1 86 0.0019 23.0 3.2 22 51-72 58-79 (281)
233 TIGR02668 moaA_archaeal probab 25.9 3E+02 0.0065 21.2 6.3 42 53-94 132-175 (302)
234 TIGR02313 HpaI-NOT-DapA 2,4-di 25.9 1.2E+02 0.0027 23.8 4.2 44 54-97 20-67 (294)
235 PRK00164 moaA molybdenum cofac 25.8 2.1E+02 0.0045 22.4 5.4 42 53-94 142-185 (331)
236 COG4294 Uve UV damage repair e 25.7 1.5E+02 0.0032 25.0 4.7 32 48-82 66-97 (347)
237 PRK14332 (dimethylallyl)adenos 25.6 1E+02 0.0022 26.0 3.9 28 54-81 317-344 (449)
238 PRK02122 glucosamine-6-phospha 25.6 2.8E+02 0.0061 24.9 6.7 27 52-78 466-494 (652)
239 cd03034 ArsC_ArsC Arsenate Red 25.3 66 0.0014 21.7 2.2 46 52-98 7-54 (112)
240 smart00267 GGDEF diguanylate c 25.3 1.9E+02 0.0041 18.4 6.3 71 7-82 13-86 (163)
241 cd02888 RNR_II_dimer Class II 25.3 92 0.002 26.6 3.5 23 54-76 440-462 (464)
242 PRK05904 coproporphyrinogen II 25.2 1E+02 0.0022 25.1 3.6 29 53-81 168-196 (353)
243 smart00481 POLIIIAc DNA polyme 25.1 56 0.0012 19.6 1.7 23 52-74 12-34 (67)
244 PF02273 Acyl_transf_2: Acyl t 25.1 1.3E+02 0.0028 24.8 4.2 30 49-78 80-109 (294)
245 PF03328 HpcH_HpaI: HpcH/HpaI 25.1 1.8E+02 0.004 21.5 4.8 56 27-82 143-198 (221)
246 PRK11713 16S ribosomal RNA met 25.1 79 0.0017 24.1 2.9 25 55-79 86-110 (234)
247 TIGR00433 bioB biotin syntheta 25.1 56 0.0012 25.0 2.0 38 54-91 157-195 (296)
248 TIGR02631 xylA_Arthro xylose i 25.0 1.1E+02 0.0024 25.4 3.9 28 49-76 109-136 (382)
249 PF09010 AsiA: Anti-Sigma Fact 25.0 55 0.0012 22.7 1.7 53 49-101 22-83 (91)
250 TIGR03687 pupylate_cterm ubiqu 24.9 99 0.0021 17.7 2.5 21 83-103 3-23 (33)
251 cd03330 Macro_2 Macro domain, 24.8 1.8E+02 0.0039 19.8 4.4 35 56-90 91-129 (133)
252 TIGR02495 NrdG2 anaerobic ribo 24.8 2.6E+02 0.0056 19.8 7.4 39 55-93 140-180 (191)
253 TIGR03585 PseH pseudaminic aci 24.8 1.3E+02 0.0029 19.9 3.7 30 52-82 92-122 (156)
254 PF01764 Lipase_3: Lipase (cla 24.6 76 0.0016 21.0 2.4 34 49-82 70-106 (140)
255 TIGR03356 BGL beta-galactosida 24.5 3.1E+02 0.0067 22.9 6.5 31 50-80 89-120 (427)
256 PF12646 DUF3783: Domain of un 24.4 1.1E+02 0.0024 18.6 3.0 26 55-81 12-37 (58)
257 TIGR03470 HpnH hopanoid biosyn 24.4 2.2E+02 0.0047 22.7 5.3 23 52-74 175-197 (318)
258 cd04873 ACT_UUR-ACR-like ACT d 24.3 1.5E+02 0.0033 17.0 3.5 27 56-82 13-39 (70)
259 PRK07757 acetyltransferase; Pr 24.3 86 0.0019 21.0 2.7 33 45-77 75-107 (152)
260 COG4799 Acetyl-CoA carboxylase 24.2 78 0.0017 28.0 3.0 27 49-75 340-366 (526)
261 PLN02531 GTP cyclohydrolase I 24.2 55 0.0012 28.5 2.0 10 26-35 360-369 (469)
262 PRK00973 glucose-6-phosphate i 24.2 1.1E+02 0.0024 26.2 3.8 37 7-45 151-191 (446)
263 PF11888 DUF3408: Protein of u 24.1 33 0.00072 24.3 0.6 24 58-82 91-114 (136)
264 cd01457 vWA_ORF176_type VWA OR 24.1 2.1E+02 0.0046 20.6 4.9 53 25-80 2-57 (199)
265 CHL00041 rps11 ribosomal prote 24.0 1.8E+02 0.0038 20.3 4.3 27 50-76 55-81 (116)
266 cd07939 DRE_TIM_NifV Streptomy 24.0 1.6E+02 0.0035 22.5 4.4 20 51-70 106-125 (259)
267 cd02169 Citrate_lyase_ligase C 23.9 84 0.0018 25.3 2.9 31 47-77 37-67 (297)
268 TIGR03605 antibiot_sagB SagB-t 23.8 2.8E+02 0.006 19.8 5.8 66 23-91 93-158 (173)
269 PHA01807 hypothetical protein 23.7 1.1E+02 0.0024 22.1 3.3 37 45-82 91-127 (153)
270 TIGR00423 radical SAM domain p 23.6 2.9E+02 0.0063 21.7 5.9 40 55-94 145-185 (309)
271 PF12694 MoCo_carrier: Putativ 23.5 87 0.0019 23.3 2.7 43 36-78 83-125 (145)
272 TIGR01698 PUNP purine nucleoti 23.5 3.7E+02 0.0079 21.1 6.6 74 26-105 148-237 (237)
273 KOG1592 Asparaginase [Amino ac 23.3 88 0.0019 26.2 3.0 43 5-48 99-143 (326)
274 cd01406 SIR2-like Sir2-like: P 23.3 1E+02 0.0023 23.0 3.2 34 2-36 188-221 (242)
275 PRK07094 biotin synthase; Prov 23.2 2.6E+02 0.0057 21.8 5.6 61 37-97 172-248 (323)
276 PLN00105 malate/L-lactate dehy 23.2 1.6E+02 0.0035 24.1 4.5 38 29-76 65-102 (330)
277 PRK11829 biofilm formation reg 23.0 2.8E+02 0.006 23.6 6.0 72 7-82 242-314 (660)
278 TIGR03827 GNAT_ablB putative b 22.6 77 0.0017 24.2 2.4 34 44-77 192-225 (266)
279 COG1082 IolE Sugar phosphate i 22.5 1.9E+02 0.0041 21.4 4.4 29 49-77 78-106 (274)
280 cd00954 NAL N-Acetylneuraminic 22.4 2.6E+02 0.0057 21.7 5.4 45 54-98 20-69 (288)
281 PRK14188 bifunctional 5,10-met 22.4 3.8E+02 0.0082 21.7 6.4 43 24-82 31-73 (296)
282 PF13407 Peripla_BP_4: Peripla 22.4 3E+02 0.0065 19.7 6.4 35 57-92 17-52 (257)
283 cd05009 SIS_GlmS_GlmD_2 SIS (S 22.3 2E+02 0.0044 19.2 4.3 38 25-77 61-98 (153)
284 PLN03176 flavanone-3-hydroxyla 22.3 1.7E+02 0.0037 20.2 3.9 39 56-97 56-94 (120)
285 PF14226 DIOX_N: non-haem diox 22.2 1.7E+02 0.0036 19.0 3.7 41 54-97 14-54 (116)
286 PRK14331 (dimethylallyl)adenos 22.1 4.1E+02 0.0089 22.0 6.7 24 55-78 312-335 (437)
287 cd02906 Macro_1 Macro domain, 22.1 2E+02 0.0043 20.4 4.3 29 54-82 103-131 (147)
288 TIGR01117 mmdA methylmalonyl-C 22.1 1.3E+02 0.0028 26.1 3.9 27 50-76 332-358 (512)
289 PRK09989 hypothetical protein; 22.1 3.1E+02 0.0066 20.5 5.6 25 53-77 83-107 (258)
290 PF04914 DltD_C: DltD C-termin 22.0 2.9E+02 0.0063 19.7 5.1 45 27-78 52-96 (130)
291 TIGR03628 arch_S11P archaeal r 22.0 2E+02 0.0043 20.3 4.2 25 53-77 48-72 (114)
292 COG3208 GrsT Predicted thioest 22.0 1E+02 0.0023 24.6 3.1 31 48-78 79-109 (244)
293 PF10905 DUF2695: Protein of u 22.0 1.1E+02 0.0023 19.0 2.5 23 36-69 22-44 (53)
294 PRK05434 phosphoglyceromutase; 21.9 2E+02 0.0043 25.1 5.0 38 27-78 113-151 (507)
295 PRK13601 putative L7Ae-like ri 21.8 98 0.0021 20.4 2.5 27 54-82 36-62 (82)
296 TIGR03699 mena_SCO4550 menaqui 21.8 2.8E+02 0.006 22.0 5.5 42 53-94 179-221 (340)
297 cd07941 DRE_TIM_LeuA3 Desulfob 21.6 1.6E+02 0.0036 22.8 4.1 19 52-70 116-134 (273)
298 PRK03620 5-dehydro-4-deoxygluc 21.5 1.7E+02 0.0036 23.1 4.1 45 54-98 27-75 (303)
299 cd04514 Taspase1_like Taspase1 21.4 1E+02 0.0023 25.2 3.0 39 5-44 96-138 (303)
300 PRK05309 30S ribosomal protein 21.4 2.3E+02 0.0049 20.2 4.4 27 50-76 59-85 (128)
301 TIGR00587 nfo apurinic endonuc 21.3 2.1E+02 0.0046 22.0 4.6 30 47-76 80-109 (274)
302 TIGR01026 fliI_yscN ATPase Fli 21.3 1.4E+02 0.003 25.4 3.9 50 25-74 252-310 (440)
303 PF11977 RNase_Zc3h12a: Zc3h12 21.2 28 0.0006 24.9 -0.3 28 52-79 22-49 (155)
304 cd04824 eu_ALAD_PBGS_cysteine_ 21.0 74 0.0016 26.5 2.1 31 50-80 46-76 (320)
305 PLN02825 amino-acid N-acetyltr 21.0 81 0.0017 27.6 2.4 36 47-82 444-479 (515)
306 cd01474 vWA_ATR ATR (Anthrax T 20.9 2.1E+02 0.0046 20.3 4.3 11 26-36 105-115 (185)
307 PRK13344 spxA transcriptional 20.9 1E+02 0.0022 21.7 2.5 41 52-93 8-50 (132)
308 PRK06267 hypothetical protein; 20.9 3.5E+02 0.0076 21.9 6.0 41 54-94 152-193 (350)
309 PF03851 UvdE: UV-endonuclease 20.8 3.8E+02 0.0081 21.6 6.0 47 49-98 39-98 (275)
310 PRK08599 coproporphyrinogen II 20.8 1.2E+02 0.0026 24.4 3.3 27 53-79 165-191 (377)
311 PRK14333 (dimethylallyl)adenos 20.8 4.8E+02 0.01 21.8 6.9 27 54-80 321-347 (448)
312 PRK14335 (dimethylallyl)adenos 20.8 5E+02 0.011 21.8 7.0 23 56-78 326-348 (455)
313 PRK08629 coproporphyrinogen II 20.7 2.3E+02 0.0051 23.7 5.1 28 54-81 213-240 (433)
314 PF07535 zf-DBF: DBF zinc fing 20.6 52 0.0011 20.0 0.9 18 76-93 31-48 (49)
315 cd01480 vWA_collagen_alpha_1-V 20.6 3.2E+02 0.007 19.4 6.4 51 24-81 1-58 (186)
316 PF10138 vWA-TerF-like: vWA fo 20.6 2.3E+02 0.0049 21.9 4.6 46 27-80 3-51 (200)
317 TIGR02651 RNase_Z ribonuclease 20.5 1.8E+02 0.0039 22.1 4.1 26 56-81 246-271 (299)
318 PRK03600 nrdI ribonucleotide r 20.5 3.2E+02 0.007 19.3 5.9 55 26-95 74-128 (134)
319 TIGR01579 MiaB-like-C MiaB-lik 20.4 4.5E+02 0.0098 21.4 6.6 26 54-79 304-329 (414)
320 cd01529 4RHOD_Repeats Member o 20.4 1.8E+02 0.0039 18.2 3.5 17 60-76 72-88 (96)
321 PRK10602 murein peptide amidas 20.4 2E+02 0.0044 22.5 4.3 39 59-99 194-234 (237)
322 COG0439 AccC Biotin carboxylas 20.3 94 0.002 26.7 2.6 23 56-78 13-35 (449)
323 cd06346 PBP1_ABC_ligand_bindin 20.1 3.9E+02 0.0085 20.2 6.1 51 25-90 137-190 (312)
324 COG4770 Acetyl/propionyl-CoA c 20.1 1.1E+02 0.0024 27.8 3.1 25 57-81 14-38 (645)
325 PRK14862 rimO ribosomal protei 20.1 4.6E+02 0.0099 21.9 6.6 24 55-78 313-336 (440)
No 1
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.2e-38 Score=244.17 Aligned_cols=85 Identities=39% Similarity=0.773 Sum_probs=80.7
Q ss_pred CCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHH
Q 045812 20 NREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKS 95 (105)
Q Consensus 20 ~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~ 95 (105)
+.+++|+|||||||||||||+++|+++.+||++|++++.++++||.++||++||+|||||||| +||+.||+|+.++
T Consensus 2 ~~~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~ 81 (230)
T PRK14837 2 NKNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADY 81 (230)
T ss_pred CCCCCCCeEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHhhh
Q 045812 96 IKSELEGFI 104 (105)
Q Consensus 96 ~~~~~~~~~ 104 (105)
+.+..++++
T Consensus 82 l~~~~~~~~ 90 (230)
T PRK14837 82 LSSEFNFYK 90 (230)
T ss_pred HHHHHHHHH
Confidence 998776653
No 2
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=6.1e-38 Score=245.10 Aligned_cols=95 Identities=47% Similarity=0.936 Sum_probs=87.6
Q ss_pred hHHhhhhccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHH
Q 045812 10 LARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEV 85 (105)
Q Consensus 10 ~~~~~l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev 85 (105)
.++..+...++.+++|+||||||||||||||++|++..+||++|++++.++++||.++||++||+||||+||| +||
T Consensus 6 ~~~~~~~~~~~~~~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev 85 (249)
T PRK14831 6 TKLQDLPADLDPQRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEV 85 (249)
T ss_pred CcchhhhhhcccCCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHH
Confidence 4555666777778999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 045812 86 EFLMKLFEKSIKSELEGFI 104 (105)
Q Consensus 86 ~~Lm~l~~~~~~~~~~~~~ 104 (105)
+.||+|+.+++.+..+.+.
T Consensus 86 ~~Lm~L~~~~l~~~~~~~~ 104 (249)
T PRK14831 86 NFLMTLFERVLRRELEELM 104 (249)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998766543
No 3
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.1e-37 Score=242.97 Aligned_cols=86 Identities=35% Similarity=0.708 Sum_probs=81.4
Q ss_pred CCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHH
Q 045812 19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEK 94 (105)
Q Consensus 19 i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~ 94 (105)
+-.+++|+||||||||||||||++|+++.+||++|++++.++++||.++||++||+||||+||| +||+.||+++.+
T Consensus 3 ~~~~~~P~HVaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~ 82 (241)
T PRK14842 3 LFESTIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVE 82 (241)
T ss_pred CCCCCCCCeEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHH
Confidence 4467899999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHhhh
Q 045812 95 SIKSELEGFI 104 (105)
Q Consensus 95 ~~~~~~~~~~ 104 (105)
++++..+.+.
T Consensus 83 ~l~~~~~~~~ 92 (241)
T PRK14842 83 FIETRLDTIH 92 (241)
T ss_pred HHHHHHHHHH
Confidence 9998876643
No 4
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.2e-37 Score=244.28 Aligned_cols=89 Identities=51% Similarity=0.970 Sum_probs=83.8
Q ss_pred hccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHH
Q 045812 16 AGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKL 91 (105)
Q Consensus 16 ~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l 91 (105)
...+..+++|+||||||||||||||++|+++.+||++|++++.++++||.++||++||+||||+||| +||+.||++
T Consensus 10 ~~~~~~~~iP~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~L 89 (253)
T PRK14832 10 PPDLDPQKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLL 89 (253)
T ss_pred cccCCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHH
Confidence 4557778999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHhhh
Q 045812 92 FEKSIKSELEGFI 104 (105)
Q Consensus 92 ~~~~~~~~~~~~~ 104 (105)
+.+++.+..+.++
T Consensus 90 ~~~~l~~~~~~~~ 102 (253)
T PRK14832 90 FERLLRRELAQMH 102 (253)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998776653
No 5
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=100.00 E-value=1.3e-37 Score=251.07 Aligned_cols=92 Identities=33% Similarity=0.564 Sum_probs=87.2
Q ss_pred hHhHHhhhhccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----H
Q 045812 8 VILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----V 83 (105)
Q Consensus 8 ~~~~~~~l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~ 83 (105)
+.+.++.+.+.++.+++|+||||||||||||||++|+++.+||++|++++.++++||.++||++||+|||||||| +
T Consensus 3 ~~~~~~~~~~~l~~g~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~ 82 (322)
T PTZ00349 3 LNIIERFITSLLRDFINIKHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPE 82 (322)
T ss_pred hHHHHHHHHHHhhcCCCCCcEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHH
Confidence 456778888889999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHH
Q 045812 84 EVEFLMKLFEKSIKSE 99 (105)
Q Consensus 84 Ev~~Lm~l~~~~~~~~ 99 (105)
||++||+|+..++.+.
T Consensus 83 EV~~Lm~L~~~~l~~~ 98 (322)
T PTZ00349 83 EIHFLFYLNLLILINE 98 (322)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998888765
No 6
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.5e-37 Score=242.07 Aligned_cols=87 Identities=41% Similarity=0.713 Sum_probs=82.2
Q ss_pred ccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHH
Q 045812 17 GGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLF 92 (105)
Q Consensus 17 ~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~ 92 (105)
..++.+++|+||||||||||||||++|++..+||++|++++.++++||.++||++||+|+||+||| +||+.||+++
T Consensus 7 ~~~~~~~~P~HvaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~ 86 (243)
T PRK14829 7 PDIPKNKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFS 86 (243)
T ss_pred cccccCCCCCeEEEecCCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHhh
Q 045812 93 EKSIKSELEGF 103 (105)
Q Consensus 93 ~~~~~~~~~~~ 103 (105)
++++.+..+.+
T Consensus 87 ~~~l~~~~~~~ 97 (243)
T PRK14829 87 RDVIHRRREQM 97 (243)
T ss_pred HHHHHHHHHHH
Confidence 99998876554
No 7
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.2e-37 Score=247.28 Aligned_cols=96 Identities=33% Similarity=0.610 Sum_probs=89.2
Q ss_pred HhHHhhhhccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HH
Q 045812 9 ILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VE 84 (105)
Q Consensus 9 ~~~~~~l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~E 84 (105)
+.+.+.+...++.+++|+|||||||||||||+++|+++.+||++|++++.++++||.++||++||+|||||||| +|
T Consensus 52 ~~~~~~~~~~l~~~~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~E 131 (296)
T PRK14827 52 QHTSKAAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEE 131 (296)
T ss_pred CCcccccccccCCCCCCCeEEEeccCchHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHH
Confidence 44667777888889999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 045812 85 VEFLMKLFEKSIKSELEGFI 104 (105)
Q Consensus 85 v~~Lm~l~~~~~~~~~~~~~ 104 (105)
|+.||+++++++.+..+.+.
T Consensus 132 V~~Lm~L~~~~l~~~~~~~~ 151 (296)
T PRK14827 132 VRFLMGFNRDVVRRRRDNLN 151 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998766543
No 8
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=3e-37 Score=239.37 Aligned_cols=83 Identities=46% Similarity=0.875 Sum_probs=79.3
Q ss_pred CCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHH
Q 045812 22 EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIK 97 (105)
Q Consensus 22 ~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~ 97 (105)
+++|+|||||||||||||+++|++..+||++|++++.++++||.++||++||+||||+||| +||+.||+++.+++.
T Consensus 2 ~~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~l~ 81 (233)
T PRK14833 2 DNTLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLK 81 (233)
T ss_pred CCCCCeEEEEccCCHHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHhhh
Q 045812 98 SELEGFI 104 (105)
Q Consensus 98 ~~~~~~~ 104 (105)
+..+.+.
T Consensus 82 ~~~~~~~ 88 (233)
T PRK14833 82 DERSTYL 88 (233)
T ss_pred HHHHHHH
Confidence 8776643
No 9
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=3.1e-37 Score=239.31 Aligned_cols=82 Identities=50% Similarity=0.877 Sum_probs=78.4
Q ss_pred CCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHH
Q 045812 23 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 23 ~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~ 98 (105)
++|+|||||||||||||+++|++..+||++|++++.++++||.++||++||+||||+||| +||+.||+++.+++.+
T Consensus 2 ~~P~HVaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~ 81 (233)
T PRK14841 2 RIPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDR 81 (233)
T ss_pred CCCCEEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999 9999999999999988
Q ss_pred HHHhhh
Q 045812 99 ELEGFI 104 (105)
Q Consensus 99 ~~~~~~ 104 (105)
..+.++
T Consensus 82 ~~~~~~ 87 (233)
T PRK14841 82 EMELLR 87 (233)
T ss_pred HHHHHH
Confidence 766543
No 10
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.6e-37 Score=240.67 Aligned_cols=92 Identities=38% Similarity=0.615 Sum_probs=84.4
Q ss_pred hhhhccCCCCCCCCeEEEeecCchHHHHhcC----CCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HH
Q 045812 13 GGVAGGLNREAMPRHVAVIMDGNVRWARQRG----LPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VE 84 (105)
Q Consensus 13 ~~l~~~i~~~~~P~HIaiImDGNRRwAk~~g----l~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~E 84 (105)
+.-..-++.+++|+|||||||||||||+++| ++..+||++|++++.++++||.++||++||+|||||||| +|
T Consensus 7 ~~~~~~~~~~~~P~HVaiImDGNrRwAk~~~~~~gl~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~E 86 (250)
T PRK14840 7 QAQENFPSLQSLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEE 86 (250)
T ss_pred hhhhhhcccCCCCCeEEEEcCCChHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHH
Confidence 3334557789999999999999999999975 899999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 045812 85 VEFLMKLFEKSIKSELEGFI 104 (105)
Q Consensus 85 v~~Lm~l~~~~~~~~~~~~~ 104 (105)
|+.||+++.+++.+.++++.
T Consensus 87 V~~Lm~L~~~~l~~~~~~~~ 106 (250)
T PRK14840 87 VAELFSLFNSQLDSQLPYLH 106 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877654
No 11
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=8.1e-37 Score=239.54 Aligned_cols=92 Identities=32% Similarity=0.581 Sum_probs=87.1
Q ss_pred HhHHhhhhccCCCCCCCCeEEEeecCchHHHHhcCCCch-HhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----H
Q 045812 9 ILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSS-AGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----V 83 (105)
Q Consensus 9 ~~~~~~l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~-~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~ 83 (105)
.+|++.+...++.+++|+|||||||||||||+++|++.. +||++|++++.++++||.++||++||+|||||||| +
T Consensus 11 ~~~~~~~~~~~~~~~~P~HvAiImDGNrRwA~~~gl~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~ 90 (256)
T PRK14828 11 KVYARRLLGELDGAQVPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSE 90 (256)
T ss_pred HHHHHHHHhhcccCCCCCEEEEEecCChHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHH
Confidence 466778888888889999999999999999999999998 99999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045812 84 EVEFLMKLFEKSIKSEL 100 (105)
Q Consensus 84 Ev~~Lm~l~~~~~~~~~ 100 (105)
||+.||+++++++.+.+
T Consensus 91 Ev~~Lm~L~~~~l~~~~ 107 (256)
T PRK14828 91 ELNPLLDIIEDVVRQLA 107 (256)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998765
No 12
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=6.1e-37 Score=239.69 Aligned_cols=87 Identities=47% Similarity=0.807 Sum_probs=82.7
Q ss_pred ccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHH
Q 045812 17 GGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLF 92 (105)
Q Consensus 17 ~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~ 92 (105)
.+++++++|+||||||||||||||++|+++.+||++|++++.++++||.++||+.||+|+||+||| +||+.||+++
T Consensus 7 ~~~~~~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~ 86 (249)
T PRK14834 7 DESDAMSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLL 86 (249)
T ss_pred CCCCCCCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHH
Confidence 456888999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHhh
Q 045812 93 EKSIKSELEGF 103 (105)
Q Consensus 93 ~~~~~~~~~~~ 103 (105)
..++.+..+.+
T Consensus 87 ~~~l~~~~~~~ 97 (249)
T PRK14834 87 RLFIRRDLAEL 97 (249)
T ss_pred HHHHHHHHHHH
Confidence 99999876654
No 13
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=8.3e-37 Score=241.78 Aligned_cols=93 Identities=37% Similarity=0.622 Sum_probs=87.9
Q ss_pred HhHHhhhhccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HH
Q 045812 9 ILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VE 84 (105)
Q Consensus 9 ~~~~~~l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~E 84 (105)
.+|++.+...+..+++|+|||||||||||||+++|++..+||++|++++.++++||.++||++||+||||+||| +|
T Consensus 26 ~~~~~~l~~~~~~~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~E 105 (275)
T PRK14835 26 WGYEQRLEREVKHGKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAE 105 (275)
T ss_pred HHHHHHHHhhcccCCCCCEEEEEecCchHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHH
Confidence 34778888888888999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045812 85 VEFLMKLFEKSIKSELE 101 (105)
Q Consensus 85 v~~Lm~l~~~~~~~~~~ 101 (105)
|++||+++.+++.+.++
T Consensus 106 V~~Lm~L~~~~l~~~~~ 122 (275)
T PRK14835 106 VETLMNLFEREARRMAV 122 (275)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999988654
No 14
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.1e-36 Score=237.52 Aligned_cols=82 Identities=45% Similarity=0.801 Sum_probs=78.2
Q ss_pred cCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHH
Q 045812 18 GLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFE 93 (105)
Q Consensus 18 ~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~ 93 (105)
.+..+++|+|||||||||||||+++|++..+||++|++++.++++||.++||++||+||||+||| +||+.||+++.
T Consensus 4 ~~~~~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm~l~~ 83 (242)
T PRK14838 4 QIDMNRIPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLL 83 (242)
T ss_pred cccCCCCCCEEEEeccCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHH
Q 045812 94 KSIKSE 99 (105)
Q Consensus 94 ~~~~~~ 99 (105)
+++.+.
T Consensus 84 ~~l~~~ 89 (242)
T PRK14838 84 DSIEEE 89 (242)
T ss_pred HHHHHH
Confidence 999763
No 15
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=100.00 E-value=1.3e-36 Score=234.16 Aligned_cols=80 Identities=49% Similarity=0.936 Sum_probs=77.4
Q ss_pred CCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHHHH
Q 045812 25 PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKSEL 100 (105)
Q Consensus 25 P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~~~ 100 (105)
|+|||||||||||||+++|+++.+||++|++++.++++||.++||++||+|||||||| +||+.||++++.++++.+
T Consensus 1 P~HvaiImDGNrRwA~~~gl~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~ 80 (221)
T cd00475 1 PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRIL 80 (221)
T ss_pred CCeEEEecCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999987
Q ss_pred Hhhh
Q 045812 101 EGFI 104 (105)
Q Consensus 101 ~~~~ 104 (105)
+.+.
T Consensus 81 ~~~~ 84 (221)
T cd00475 81 KELE 84 (221)
T ss_pred HHHH
Confidence 7643
No 16
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=8.8e-37 Score=239.12 Aligned_cols=90 Identities=47% Similarity=0.855 Sum_probs=84.4
Q ss_pred hhccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHH
Q 045812 15 VAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMK 90 (105)
Q Consensus 15 l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~ 90 (105)
+...++.+++|+|||||||||||||+++|+++.+||++|++++.++++||.++||++||+|+||+||| +||+.||+
T Consensus 5 ~~~~~~~~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~ 84 (253)
T PRK14836 5 IQMIPANENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALME 84 (253)
T ss_pred cccccccCCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHH
Confidence 44567788999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhhh
Q 045812 91 LFEKSIKSELEGFI 104 (105)
Q Consensus 91 l~~~~~~~~~~~~~ 104 (105)
++..++.+..+++.
T Consensus 85 l~~~~l~~~~~~~~ 98 (253)
T PRK14836 85 LFLKALDREVDKLH 98 (253)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998776653
No 17
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=3.7e-36 Score=234.52 Aligned_cols=82 Identities=49% Similarity=0.793 Sum_probs=78.1
Q ss_pred CCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHH
Q 045812 23 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 23 ~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~ 98 (105)
.-|+|||||||||||||+++|++..+||++|++++.++++||.++||++||+|||||||| +||+.||+|+.+++.+
T Consensus 8 ~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~ 87 (239)
T PRK14839 8 RSGLHVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRAYLRN 87 (239)
T ss_pred CCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999999999999999999999999999999999999999 9999999999999998
Q ss_pred HHHhhh
Q 045812 99 ELEGFI 104 (105)
Q Consensus 99 ~~~~~~ 104 (105)
.++.+.
T Consensus 88 ~~~~~~ 93 (239)
T PRK14839 88 ETERLA 93 (239)
T ss_pred HHHHHH
Confidence 776643
No 18
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=5.9e-36 Score=234.11 Aligned_cols=87 Identities=43% Similarity=0.794 Sum_probs=82.3
Q ss_pred ccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHH
Q 045812 17 GGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLF 92 (105)
Q Consensus 17 ~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~ 92 (105)
..++.+++|+|||||||||||||+++|++..+||++|++++.++++||.++||++||+||||+||| +||+.||+++
T Consensus 15 ~~~~~~~~P~HVAiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~ 94 (251)
T PRK14830 15 EELDKGNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLP 94 (251)
T ss_pred cccCCCCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHH
Confidence 446678999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHhh
Q 045812 93 EKSIKSELEGF 103 (105)
Q Consensus 93 ~~~~~~~~~~~ 103 (105)
..++.+.++.+
T Consensus 95 ~~~l~~~~~~~ 105 (251)
T PRK14830 95 VEFLDKFVPEL 105 (251)
T ss_pred HHHHHHHHHHH
Confidence 99999877654
No 19
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=100.00 E-value=7e-36 Score=231.10 Aligned_cols=79 Identities=53% Similarity=1.015 Sum_probs=76.0
Q ss_pred CeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHHHHH
Q 045812 26 RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKSELE 101 (105)
Q Consensus 26 ~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~~~~ 101 (105)
+||||||||||||||++|+++.+||++|+++++++++||.++||++||+|||||||| +||++||+|+.+++.+..+
T Consensus 1 ~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~ 80 (226)
T TIGR00055 1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVK 80 (226)
T ss_pred CcEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999 9999999999999998776
Q ss_pred hhh
Q 045812 102 GFI 104 (105)
Q Consensus 102 ~~~ 104 (105)
+++
T Consensus 81 ~~~ 83 (226)
T TIGR00055 81 ELH 83 (226)
T ss_pred HHH
Confidence 654
No 20
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=100.00 E-value=3.9e-35 Score=231.36 Aligned_cols=85 Identities=54% Similarity=0.831 Sum_probs=80.7
Q ss_pred cCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHH
Q 045812 18 GLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFE 93 (105)
Q Consensus 18 ~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~ 93 (105)
.+..+++|+||||||||||||||++|++..+||++|+.++.++++||.++||++||+||||+||| +||+.||+|+.
T Consensus 30 ~~~~g~~P~HVaFIMDGNRR~AKk~~L~~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~ 109 (271)
T KOG1602|consen 30 LLARGPMPRHVAFIMDGNRRYAKKRGLETSEGHEAGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLAL 109 (271)
T ss_pred HHhcCCCcceeEEEecCchHHHHhcCCCcccchHHHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHHH
Confidence 45669999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHh
Q 045812 94 KSIKSELEG 102 (105)
Q Consensus 94 ~~~~~~~~~ 102 (105)
+.+++..+.
T Consensus 110 ~k~~~~~~~ 118 (271)
T KOG1602|consen 110 EKIERLLEQ 118 (271)
T ss_pred HHHHHHHHH
Confidence 999986543
No 21
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=99.97 E-value=3e-31 Score=207.32 Aligned_cols=82 Identities=56% Similarity=1.068 Sum_probs=79.1
Q ss_pred CCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHH
Q 045812 23 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 23 ~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~ 98 (105)
.+|+|||||||||||||+++|+++..||+.|+++++++++||.++||+.+|+|+|||||| +||++||+++.+++.+
T Consensus 15 ~~p~HvaiImDGN~RwAk~~~~~r~~Gh~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~~ 94 (245)
T COG0020 15 RLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALRE 94 (245)
T ss_pred ccccceEEEecCChHHHHhCCCChhHHHHHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHhhh
Q 045812 99 ELEGFI 104 (105)
Q Consensus 99 ~~~~~~ 104 (105)
..+.++
T Consensus 95 ~~~~l~ 100 (245)
T COG0020 95 ELKKLH 100 (245)
T ss_pred HHHHHh
Confidence 886554
No 22
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=99.97 E-value=9.6e-31 Score=200.10 Aligned_cols=73 Identities=53% Similarity=1.004 Sum_probs=68.1
Q ss_pred eecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHHHHHhh
Q 045812 31 IMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKSELEGF 103 (105)
Q Consensus 31 ImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~~~~~~ 103 (105)
|||||||||+++|++..+||++|++++.++++||.++||++||+|||||||| +||+.||+++.+++.+.++..
T Consensus 1 ImDGNrRwA~~~g~~~~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~ 77 (223)
T PF01255_consen 1 IMDGNRRWAKKRGLPRSEGHRAGAEKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALMDLFERYLRELIDEL 77 (223)
T ss_dssp EE--HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 8999999999999999999999999999999999999999999999999999 999999999999999988764
No 23
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=99.96 E-value=1e-29 Score=196.92 Aligned_cols=73 Identities=42% Similarity=0.763 Sum_probs=70.2
Q ss_pred ecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHHHHHhhh
Q 045812 32 MDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKSELEGFI 104 (105)
Q Consensus 32 mDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~~~~~~~ 104 (105)
||||||||+++|++..+||++|++++.++++||.++||++||+||||+||| +||+.||+++.+++.+.++.+.
T Consensus 1 mDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~ 77 (229)
T PRK10240 1 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLH 77 (229)
T ss_pred CCCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999 9999999999999998776653
No 24
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=86.46 E-value=4 Score=30.07 Aligned_cols=69 Identities=22% Similarity=0.244 Sum_probs=48.3
Q ss_pred CCCeEEEeecCchHHHHhcCCCchHhHHHHHHH-----HHHHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Q 045812 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRS-----LRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSIKS 98 (105)
Q Consensus 24 ~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~-----l~~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l~~~~~~~ 98 (105)
-|.|+++..|+-+..=|+.-.|...+++..... +..+-+++..+||+.+..=.+ |=|.++..+.....+
T Consensus 50 ~p~~~vv~fD~~~~~fR~~l~p~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~~g~------EADDvIatla~~~~~ 123 (169)
T PF02739_consen 50 KPDYVVVAFDSKGPTFRKELYPEYKANRKPMPEELIPQLPYIKELLEALGIPVLEVPGY------EADDVIATLAKKASE 123 (169)
T ss_dssp TEEEEEEEEEBSSCHHHHHCCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEETTB-------HHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHCCCCEecCCCC------cHHHHHHHHHhhhcc
Confidence 489999999998875566667888888886543 455777888899987765433 556666655555443
No 25
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=83.52 E-value=5.5 Score=26.36 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhcCCC--EEEEEeeccCCHHHHHHHHHHH
Q 045812 53 GVRSLRELVELCCRWGVK--VLTVFAFSYDNWVEVEFLMKLF 92 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~--~vT~yafSteN~~Ev~~Lm~l~ 92 (105)
..+.+.+.++.+.+.|++ ...++.+..+|.+|+..+.+++
T Consensus 125 ~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 125 SFERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEETIRFI 166 (166)
T ss_dssp HHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHhCcC
Confidence 467888999999999998 4555556569998888887754
No 26
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=82.42 E-value=9.8 Score=26.58 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEee
Q 045812 50 HEAGVRSLRELVELCCRWGVKVLTVFAF 77 (105)
Q Consensus 50 h~~G~~~l~~v~~~c~~~GI~~vT~yaf 77 (105)
.....+.+.+.++.|.++|++.+++...
T Consensus 66 r~~~~~~~~~~i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSEEEEECT
T ss_pred hHHHHHHHHHHHHHHHHhCCCceeecCc
Confidence 6777889999999999999999999966
No 27
>PF02195 ParBc: ParB-like nuclease domain; InterPro: IPR003115 Proteins containing this domain, appear to be related to the Escherichia coli plasmid protein ParB, which preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5--3 exonuclease activity.; GO: 0003677 DNA binding; PDB: 1VK1_A 3CYI_A 1YZS_A 2RII_X 2B6F_A 3HY2_Y 1XW4_X 1XW3_A 1VZ0_G 1R71_C ....
Probab=75.76 E-value=11 Score=23.73 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=21.0
Q ss_pred eEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccC
Q 045812 27 HVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYD 80 (105)
Q Consensus 27 HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSte 80 (105)
.--.|.||++||.- |.++|.+.+-++....+
T Consensus 47 ~~~~IidG~~R~~A-----------------------~~~lg~~~i~v~v~~~~ 77 (90)
T PF02195_consen 47 GKYEIIDGHHRLRA-----------------------ARELGLETIPVIVVDVD 77 (90)
T ss_dssp CEEEEEE-HHHHHH-----------------------HHHHT-SEEEEEEEECT
T ss_pred cCCcCCCCHHHHHH-----------------------HHHcCCCeEeEEEEECC
Confidence 34688899999985 66677777777776544
No 28
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=74.83 E-value=4.9 Score=31.01 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=43.0
Q ss_pred hHHhhhhccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHH-----HHHHHHHHHHHhcCCCEEEEEeeccCCHHH
Q 045812 10 LARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGV-----RSLRELVELCCRWGVKVLTVFAFSYDNWVE 84 (105)
Q Consensus 10 ~~~~~l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~-----~~l~~v~~~c~~~GI~~vT~yafSteN~~E 84 (105)
-+-..+.+-+... -|.|++++.||.+..=|+.=.+...+++... ..+..+-+++..+||+.+..--+ |
T Consensus 36 g~~~~l~~~~~~~-~p~~~~~~fD~~~~~~R~~l~p~YK~~R~~~p~~l~~q~~~~~~~l~~~gi~~i~~~~~------E 108 (240)
T cd00008 36 GFLNMLLKLIKEY-KPTYVAVVFDAGGKTFRHELYPEYKANRKKMPEELREQIPLIKELLEALGIPVLEIEGY------E 108 (240)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEEeCCCCcccccccHHHHcCCCCCCHHHHHHHHHHHHHHHHCCCCEEecCCc------C
Confidence 3344444444433 3999999999985433444344444444331 22344455566689987765433 4
Q ss_pred HHHHHHHHHH
Q 045812 85 VEFLMKLFEK 94 (105)
Q Consensus 85 v~~Lm~l~~~ 94 (105)
=|.++..+..
T Consensus 109 ADD~ia~la~ 118 (240)
T cd00008 109 ADDVIGTLAK 118 (240)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 29
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=71.99 E-value=5.5 Score=26.17 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=28.7
Q ss_pred hHhHHHHHHHHHHHHHHH-HhcCCCEEEEEeeccCCH
Q 045812 47 SAGHEAGVRSLRELVELC-CRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 47 ~~Gh~~G~~~l~~v~~~c-~~~GI~~vT~yafSteN~ 82 (105)
..|+.-|.+.+..+++|| .++|+..+.+++. .+|.
T Consensus 95 ~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~-~~N~ 130 (142)
T PF13302_consen 95 YRGKGYGTEALKLLLDWAFEELGLHRIIATVM-ADNE 130 (142)
T ss_dssp GTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEE-TT-H
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEEEEEC-cCCH
Confidence 346666899999999999 6899999999998 5675
No 30
>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism]
Probab=71.99 E-value=1.7 Score=35.13 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=31.5
Q ss_pred CCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 21 REAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 21 ~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
-.+.|+|+|.+---+ .+| .--+.-+-+++.||...||+++++|.--
T Consensus 61 L~k~p~hl~lvI~~v-----------~~~-~~~~~da~~~v~w~v~~gik~~~lyd~~ 106 (263)
T KOG2818|consen 61 LKKGPKHLALVIHPV-----------EDG-EGSFSDASSIVFWAVTVGIKYLSLYDRV 106 (263)
T ss_pred hhhcchhheEEEEec-----------ccC-CceehhhHHHHHHHHHhccceeeHHHHH
Confidence 347799999443222 112 1113445789999999999999999865
No 31
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=71.96 E-value=24 Score=22.87 Aligned_cols=58 Identities=17% Similarity=0.024 Sum_probs=40.7
Q ss_pred CCeEEEe--ecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHH
Q 045812 25 PRHVAVI--MDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLM 89 (105)
Q Consensus 25 P~HIaiI--mDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm 89 (105)
.+||..+ |+-+.. .....+..=.+.++.+++.|.+.+++.|.+=++++-++ +++..+|
T Consensus 55 ~~~Iih~v~P~~~~~-------~~~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 55 CKYIIHAVGPTYNSP-------GEKNSYEALESAYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp SSEEEEEEEEETTTS-------TSTTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred ccceEEEecceeccc-------cccccHHHHHHHHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 3787655 765522 22334444455566677778999999999999999987 7777665
No 32
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=71.75 E-value=27 Score=26.30 Aligned_cols=28 Identities=11% Similarity=0.417 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEee
Q 045812 50 HEAGVRSLRELVELCCRWGVKVLTVFAF 77 (105)
Q Consensus 50 h~~G~~~l~~v~~~c~~~GI~~vT~yaf 77 (105)
..+..+.+++.+++|.++|++.|.+..+
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~ 116 (284)
T PRK13210 89 RERALEIMKKAIRLAQDLGIRTIQLAGY 116 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCc
Confidence 4567788999999999999999998654
No 33
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=71.52 E-value=4.9 Score=27.22 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=29.3
Q ss_pred hHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCC
Q 045812 47 SAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDN 81 (105)
Q Consensus 47 ~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN 81 (105)
..|.--|.+-+..+++||.+.|++.|.+.+. .+|
T Consensus 97 ~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~-~~N 130 (150)
T PLN02706 97 ARGKGLGKKIIEALTEHARSAGCYKVILDCS-EEN 130 (150)
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCCEEEEEec-ccc
Confidence 3466678999999999999999999999987 567
No 34
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=71.15 E-value=32 Score=25.90 Aligned_cols=29 Identities=3% Similarity=0.000 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEee
Q 045812 49 GHEAGVRSLRELVELCCRWGVKVLTVFAF 77 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI~~vT~yaf 77 (105)
..++..+.+.+.+++|..+|++.+++...
T Consensus 84 ~r~~~~~~~~~~i~~a~~lGa~~i~~~~~ 112 (275)
T PRK09856 84 MRRESLDMIKLAMDMAKEMNAGYTLISAA 112 (275)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 34566788999999999999999988764
No 35
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=70.51 E-value=15 Score=29.21 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=38.3
Q ss_pred CeEEEeecCch--HHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHHHHH
Q 045812 26 RHVAVIMDGNV--RWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEK 94 (105)
Q Consensus 26 ~HIaiImDGNR--RwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l~~~ 94 (105)
..|.|=+||-. -..+.+|. ...++++.+.++.+.+.|++....++.+..|.+|+..+.+++.+
T Consensus 107 ~~v~iSldg~~~e~~d~~rg~------~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~ 171 (358)
T TIGR02109 107 DHVQLSFQGVDEALADRIAGY------KNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIE 171 (358)
T ss_pred CEEEEeCcCCCHHHHHHhcCC------ccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHH
Confidence 35666666642 12222221 22356667777777888887666677777887777766666543
No 36
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=67.77 E-value=7.3 Score=26.27 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHH-HhcCCCEEEEEeeccCCH
Q 045812 49 GHEAGVRSLRELVELC-CRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c-~~~GI~~vT~yafSteN~ 82 (105)
|...|..-+..++++| .+.|++.+++.+++. |-
T Consensus 90 ~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~-N~ 123 (155)
T PF13420_consen 90 GKGIGRKLLDELIEYAFKELGIHKIYLEVFSS-NE 123 (155)
T ss_dssp TSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT--H
T ss_pred CCcHHHHHHHHHHHHhhhccCeEEEEEEEecC-CH
Confidence 4556888999999999 999999999999865 65
No 37
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=67.25 E-value=12 Score=22.79 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEeecc
Q 045812 51 EAGVRSLRELVELCCRWGVKVLTVFAFSY 79 (105)
Q Consensus 51 ~~G~~~l~~v~~~c~~~GI~~vT~yafSt 79 (105)
.+.+..+..-++++.++|++.|.++..|.
T Consensus 3 ~aE~~al~~al~~a~~~g~~~i~v~sDs~ 31 (87)
T PF13456_consen 3 EAEALALLEALQLAWELGIRKIIVESDSQ 31 (87)
T ss_dssp HHHHHHHHHHHHHHHCCT-SCEEEEES-H
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEecCc
Confidence 35567788999999999999999999983
No 38
>smart00470 ParB ParB-like nuclease domain. Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5--3 exonuclease activity.
Probab=66.08 E-value=8.6 Score=24.59 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=10.3
Q ss_pred EEeecCchHHHH
Q 045812 29 AVIMDGNVRWAR 40 (105)
Q Consensus 29 aiImDGNRRwAk 40 (105)
.+|.||++||.-
T Consensus 48 ~~vidG~~R~~A 59 (89)
T smart00470 48 YEIIDGERRLRA 59 (89)
T ss_pred EEEEeCHHHHHH
Confidence 589999999985
No 39
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=64.56 E-value=8.1 Score=25.64 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=29.0
Q ss_pred chHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCC
Q 045812 46 SSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDN 81 (105)
Q Consensus 46 ~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN 81 (105)
..+|...|..-+..+.++|.+.|++.+++.+. .+|
T Consensus 87 ~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~-~~n 121 (144)
T PRK10146 87 QARGLNVGSKLLAWAEEEARQAGAEMTELSTN-VKR 121 (144)
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCcEEEEecC-CCc
Confidence 34566778899999999999999999999877 344
No 40
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=64.35 E-value=27 Score=28.02 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=30.4
Q ss_pred CCeEEEeecCch--HHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHHH
Q 045812 25 PRHVAVIMDGNV--RWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLF 92 (105)
Q Consensus 25 P~HIaiImDGNR--RwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l~ 92 (105)
...|.|=+||-. -+-+.+|.+ -.++++.+.++.+.+.|++...-++.+..|.+|+..+.+++
T Consensus 115 ~~~v~iSldg~~~e~~d~irg~~------g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~ 178 (378)
T PRK05301 115 LDHIQLSFQDSDPELNDRLAGTK------GAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELA 178 (378)
T ss_pred CCEEEEEecCCCHHHHHHHcCCC------chHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHH
Confidence 346777778731 122222221 12444455555555555555445555555555555444443
No 41
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=63.72 E-value=21 Score=28.41 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=40.8
Q ss_pred eEEEeecCchHHHHhcCCCch-HhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHHHH
Q 045812 27 HVAVIMDGNVRWARQRGLPSS-AGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFE 93 (105)
Q Consensus 27 HIaiImDGNRRwAk~~gl~~~-~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l~~ 93 (105)
.|.|=+||... .+..-+. .+-...++++.+-++.+.+.|++....++.+..|.+|++.+.+++.
T Consensus 118 ~v~iSlDg~~~---~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~~~v~~~n~~~l~~i~~~~~ 182 (370)
T PRK13758 118 LVGLSMDGPKE---IHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVTSNTARHVNKIYKYFK 182 (370)
T ss_pred eEEEeecCCHH---HhccccCCCCCCccHHHHHHHHHHHHHhCCCceEEEEeccccccCHHHHHHHHH
Confidence 78888898632 1221111 0112236777777888888888777777787788777777766654
No 42
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=62.72 E-value=28 Score=29.20 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH----------------HHHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW----------------VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~----------------~Ev~~Lm~l~~~~~~~ 98 (105)
.+.+.+.++.+.++|+.+||+|.+..+.+ ++.-.+++...+++.+
T Consensus 203 ~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~ 263 (416)
T COG0635 203 LESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEK 263 (416)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999998886 3445677777777664
No 43
>PRK13907 rnhA ribonuclease H; Provisional
Probab=62.52 E-value=19 Score=24.36 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEeecc
Q 045812 49 GHEAGVRSLRELVELCCRWGVKVLTVFAFSY 79 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSt 79 (105)
-+.+-+..+..-+++|.+.|++.|.+|..|.
T Consensus 41 n~~AE~~All~aL~~a~~~g~~~v~i~sDS~ 71 (128)
T PRK13907 41 NHEAEYHALLAALKYCTEHNYNIVSFRTDSQ 71 (128)
T ss_pred CcHHHHHHHHHHHHHHHhCCCCEEEEEechH
Confidence 3556678889999999999999999999983
No 44
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=61.75 E-value=4.6 Score=30.37 Aligned_cols=58 Identities=26% Similarity=0.366 Sum_probs=36.8
Q ss_pred cCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHHH
Q 045812 33 DGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLF 92 (105)
Q Consensus 33 DGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l~ 92 (105)
|.|+|.|+....-..++|-+ .-.+++++++|..+|.+.|.+ ||-.-=-+|-..+-+++
T Consensus 20 ~~~~~~~~~aa~vE~~~Y~~-~tRveEiieFak~mgykkiGi-AfCiGL~~EA~~~~~iL 77 (157)
T PF08901_consen 20 DENRKIARAAAEVEGEGYGK-LTRVEEIIEFAKRMGYKKIGI-AFCIGLRKEARILAKIL 77 (157)
T ss_pred HHHHHHHHHHHHHhhhcccc-cchHHHHHHHHHHcCCCeeee-hhhHhHHHHHHHHHHHH
Confidence 46888888765433333322 567999999999999999987 33221114544444444
No 45
>PRK09482 flap endonuclease-like protein; Provisional
Probab=61.42 E-value=8.6 Score=30.55 Aligned_cols=62 Identities=18% Similarity=0.352 Sum_probs=33.5
Q ss_pred hHHhhhhccCCCCCCCCeEEEeecCchH---HHHhcCCCchHhHHH-----HHHHHHHHHHHHHhcCCCEEE
Q 045812 10 LARGGVAGGLNREAMPRHVAVIMDGNVR---WARQRGLPSSAGHEA-----GVRSLRELVELCCRWGVKVLT 73 (105)
Q Consensus 10 ~~~~~l~~~i~~~~~P~HIaiImDGNRR---wAk~~gl~~~~Gh~~-----G~~~l~~v~~~c~~~GI~~vT 73 (105)
-+-..+.+-++. .-|.||+++-|+.++ | |..=.|...+++. =...+..+-+.+..+||+.+.
T Consensus 33 gf~~~l~~ll~~-~~p~~i~v~fD~~~~~~~f-R~~l~p~YKa~R~~~Pe~l~~Q~~~i~~~l~~~gi~~~~ 102 (256)
T PRK09482 33 TCQHALDKLIRH-SQPTHAVAVFDGDARSSGW-RHQLLPDYKAGRKPMPEALQQGLPAIRAAFEELGIDSWH 102 (256)
T ss_pred HHHHHHHHHHHH-cCCCEEEEEEeCCCCCccc-HHHHhHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCEec
Confidence 344444444443 349999999998654 6 2222222233321 122334455667778887654
No 46
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=61.39 E-value=46 Score=25.66 Aligned_cols=44 Identities=14% Similarity=0.297 Sum_probs=30.2
Q ss_pred CCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 25 PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 25 P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
-+||+++.|.+- ..+...+.++.+.+.++|++-+++.+-+.+.|
T Consensus 131 ~k~igvl~~~~~--------------~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~ 174 (294)
T PF04392_consen 131 AKRIGVLYDPSE--------------PNSVAQIEQLRKAAKKLGIELVEIPVPSSEDL 174 (294)
T ss_dssp --EEEEEEETT---------------HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGH
T ss_pred CCEEEEEecCCC--------------ccHHHHHHHHHHHHHHcCCEEEEEecCcHhHH
Confidence 379999998762 12344566677778899999888888777777
No 47
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=61.32 E-value=10 Score=20.27 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCCEEEE
Q 045812 48 AGHEAGVRSLRELVELCCRWGVKVLTV 74 (105)
Q Consensus 48 ~Gh~~G~~~l~~v~~~c~~~GI~~vT~ 74 (105)
+|+.-|..-+..++++|.+.|++.+.+
T Consensus 38 ~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 38 RGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred cCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 356678889999999999999988865
No 48
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=60.89 E-value=29 Score=23.29 Aligned_cols=73 Identities=19% Similarity=0.146 Sum_probs=43.2
Q ss_pred CCCCeEEEeecCchHHHHhcCCCc--hHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCHH--HHHHHHHHHHHHHHH
Q 045812 23 AMPRHVAVIMDGNVRWARQRGLPS--SAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWV--EVEFLMKLFEKSIKS 98 (105)
Q Consensus 23 ~~P~HIaiImDGNRRwAk~~gl~~--~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~~--Ev~~Lm~l~~~~~~~ 98 (105)
..+=++.++.+|... .+. ......+...-.|..+.|..+||+.+.++-|...... -.+.+.+.+++.+++
T Consensus 25 g~~v~vv~~t~G~~~------~~~~~~~~~~~~~~R~~E~~~a~~~lGv~~~~~l~~~D~~~~~~~~~~~~~~l~~~i~~ 98 (128)
T PF02585_consen 25 GHRVVVVTLTDGEAG------HPDPTPWARELGEIRRAEARAAAEILGVENVIFLDFPDGQLPGWSWEELVRDLEDLIRE 98 (128)
T ss_dssp T-EEEEEECE--TTT------SSSSHHHHHSCHHHHHHHHHHHHHHCT-EEEEEEEECTTSCTCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEecccccC------CcccchhhHhHHHHHHHHHHHHHHHcCCceEEEeecCCCCcccccHHHHHHHHHHHHHH
Confidence 356688999998621 111 0011334456778999999999999999998655442 355566666666665
Q ss_pred HHH
Q 045812 99 ELE 101 (105)
Q Consensus 99 ~~~ 101 (105)
.-+
T Consensus 99 ~~p 101 (128)
T PF02585_consen 99 FRP 101 (128)
T ss_dssp H-E
T ss_pred cCC
Confidence 543
No 49
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=60.14 E-value=12 Score=22.34 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=28.1
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 48 AGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 48 ~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
+|.--|..-+..+.++|.+.|++.+.+++. .+|.
T Consensus 38 r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~-~~n~ 71 (83)
T PF00583_consen 38 RGQGIGSKLLQAAEEWARKRGIKRIYLDVS-PDNP 71 (83)
T ss_dssp TTSSHHHHHHHHHHHHHHHTTESEEEEEEE-TTGH
T ss_pred hhCCCchhhhhhhhhhHHhcCccEEEEEEe-CCCH
Confidence 355558888999999999999999999986 4454
No 50
>PRK03624 putative acetyltransferase; Provisional
Probab=59.86 E-value=15 Score=23.65 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=30.3
Q ss_pred CchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCC
Q 045812 45 PSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDN 81 (105)
Q Consensus 45 ~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN 81 (105)
|..+|+-.|..-+..+.+++.+.|++.+++.+++ +|
T Consensus 78 p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~-~N 113 (140)
T PRK03624 78 PDFRGRGIGRALVARLEKKLIARGCPKINLQVRE-DN 113 (140)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEec-Cc
Confidence 5566888888889999999999999999999874 35
No 51
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=58.75 E-value=55 Score=23.31 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
....+++++.|.+.|++.|.+=++||.++
T Consensus 93 ~~~~~~~L~~a~~~~~~SIAfPai~tG~~ 121 (140)
T cd02905 93 YSCYRNVLQLAKELGLESIALCVISSEKR 121 (140)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCC
Confidence 34456778999999999999999999998
No 52
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=58.07 E-value=6.8 Score=29.70 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=18.3
Q ss_pred eEEEeecCchHHHHhcCCCc
Q 045812 27 HVAVIMDGNVRWARQRGLPS 46 (105)
Q Consensus 27 HIaiImDGNRRwAk~~gl~~ 46 (105)
||-+|+|||.-+.|+.|+..
T Consensus 99 ~I~fi~Dg~geFTk~~Gm~~ 118 (165)
T COG0678 99 NIKFIPDGNGEFTKAMGMLV 118 (165)
T ss_pred cEEEecCCCchhhhhcCcee
Confidence 99999999999999999743
No 53
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=57.73 E-value=64 Score=24.41 Aligned_cols=29 Identities=14% Similarity=0.405 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEee
Q 045812 49 GHEAGVRSLRELVELCCRWGVKVLTVFAF 77 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI~~vT~yaf 77 (105)
......+.+++.++.|.++|++.|++-.+
T Consensus 93 ~r~~~~~~~~~~i~~a~~lG~~~i~~~~~ 121 (283)
T PRK13209 93 VRAQALEIMRKAIQLAQDLGIRVIQLAGY 121 (283)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 45667888999999999999999987543
No 54
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=56.80 E-value=10 Score=32.45 Aligned_cols=55 Identities=22% Similarity=0.144 Sum_probs=41.7
Q ss_pred CCCCeEE---EeecCchHHHHhcCCCch--------------HhHHHH-------------HHHHHHHHHHHHhcCCCEE
Q 045812 23 AMPRHVA---VIMDGNVRWARQRGLPSS--------------AGHEAG-------------VRSLRELVELCCRWGVKVL 72 (105)
Q Consensus 23 ~~P~HIa---iImDGNRRwAk~~gl~~~--------------~Gh~~G-------------~~~l~~v~~~c~~~GI~~v 72 (105)
++|-|+- +=.|.=+.||+.+|+..- ++|+.| ++..++.+++|.++|-+.|
T Consensus 88 ~v~LH~~wd~vD~~elk~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLtnPD~~VR~~AIeh~~~~i~Ig~elGs~~v 167 (412)
T TIGR02629 88 NVSLHIPWDKADPKELKARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLSHTDAATRRQAVEHNLECIEIGKALGSKAL 167 (412)
T ss_pred CccccCCCCcCCHHHHHHHHHHcCCccceeccccccCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 6788883 445556799999986543 255445 5668889999999999999
Q ss_pred EEEee
Q 045812 73 TVFAF 77 (105)
Q Consensus 73 T~yaf 77 (105)
|+|.=
T Consensus 168 ~IW~g 172 (412)
T TIGR02629 168 TVWIG 172 (412)
T ss_pred EEECC
Confidence 99864
No 55
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=56.35 E-value=17 Score=24.45 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHHHHHHHHh-cCCCEEEEEeeccCCH
Q 045812 48 AGHEAGVRSLRELVELCCR-WGVKVLTVFAFSYDNW 82 (105)
Q Consensus 48 ~Gh~~G~~~l~~v~~~c~~-~GI~~vT~yafSteN~ 82 (105)
.|.-.|.+.+..+++++.+ +|+..|+..++ .+|-
T Consensus 108 ~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~-~~N~ 142 (187)
T COG1670 108 WGKGYATEALRALLDYAFEELGLHRIEATVD-PENE 142 (187)
T ss_pred hcCchHHHHHHHHHHHhhhhcCceEEEEEec-CCCH
Confidence 3556688999999999888 89999999999 6775
No 56
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=56.21 E-value=12 Score=28.71 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=16.7
Q ss_pred CeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHH
Q 045812 26 RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELC 64 (105)
Q Consensus 26 ~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c 64 (105)
-|||.|||+. .--|..|+-.+++|+
T Consensus 87 ~hIaYiP~~~--------------~ViGLSKl~RiV~~~ 111 (188)
T PLN03044 87 IHVGYIPNAG--------------VILGLSKLARIAEVY 111 (188)
T ss_pred EEEEEECCCC--------------ccccHHHHHHHHHHH
Confidence 6999999722 134666777777664
No 57
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=56.15 E-value=63 Score=24.51 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=27.8
Q ss_pred hHhHHHHHHHHHHHHHHHHhcCCCEEEEEeecc
Q 045812 47 SAGHEAGVRSLRELVELCCRWGVKVLTVFAFSY 79 (105)
Q Consensus 47 ~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSt 79 (105)
.+......+.++..++.|.++|++.+.++.-+.
T Consensus 77 ~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~ 109 (279)
T cd00019 77 KEKREKSIERLKDEIERCEELGIRLLVFHPGSY 109 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 346788899999999999999999988866554
No 58
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=55.84 E-value=15 Score=26.49 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=30.9
Q ss_pred CchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 45 PSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 45 ~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
+...|.--|.+-+..++++|.++|++.|.+.++ .+|-
T Consensus 133 p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~-~~N~ 169 (191)
T TIGR02382 133 PGAQSRGIGAELMQTALNWCYARGLTRLRVATQ-MGNT 169 (191)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeC-CCCH
Confidence 444566679999999999999999999999997 5564
No 59
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=55.16 E-value=43 Score=22.82 Aligned_cols=46 Identities=15% Similarity=0.339 Sum_probs=27.2
Q ss_pred CCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHH-HHHHhcCC-CEEEEEeeccC
Q 045812 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELV-ELCCRWGV-KVLTVFAFSYD 80 (105)
Q Consensus 24 ~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~-~~c~~~GI-~~vT~yafSte 80 (105)
+|+.|.|++|..+- +. |.+ .+.+++.+ .+...++- ..+++++||.+
T Consensus 1 ~~~~v~~vlD~S~S------M~---~~~--~~~~~~al~~~l~~l~~~~~~~l~~Fs~~ 48 (171)
T cd01461 1 LPKEVVFVIDTSGS------MS---GTK--IEQTKEALLTALKDLPPGDYFNIIGFSDT 48 (171)
T ss_pred CCceEEEEEECCCC------CC---Chh--HHHHHHHHHHHHHhCCCCCEEEEEEeCCC
Confidence 69999999998832 21 221 22222222 22344543 47999999876
No 60
>PF15603 Imm45: Immunity protein 45
Probab=54.57 E-value=15 Score=24.63 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=24.3
Q ss_pred EEEEEeeccCCH-----------HHHHHHHHHHHHHHHH
Q 045812 71 VLTVFAFSYDNW-----------VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 71 ~vT~yafSteN~-----------~Ev~~Lm~l~~~~~~~ 98 (105)
.--+|.-|+.|| .|++.+++.++..+.+
T Consensus 36 ~Fvvy~~si~~We~P~e~~~it~~e~q~II~aI~~~~~~ 74 (82)
T PF15603_consen 36 DFVVYKDSIKNWEPPHENEPITIAERQKIIEAIEKYFSE 74 (82)
T ss_pred CEEEEccccccccCCCCCcccCHHHHHHHHHHHHHHHhc
Confidence 366899999999 7999999999988875
No 61
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=54.36 E-value=15 Score=26.08 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=29.3
Q ss_pred HhHHHHHHHHHHHHHHHHh-cCCCEEEEEeeccCCH
Q 045812 48 AGHEAGVRSLRELVELCCR-WGVKVLTVFAFSYDNW 82 (105)
Q Consensus 48 ~Gh~~G~~~l~~v~~~c~~-~GI~~vT~yafSteN~ 82 (105)
.|.-.|.+.+..+++||.+ +|++.|.+.++ .+|-
T Consensus 116 ~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~-~~N~ 150 (194)
T PRK10809 116 QGQGLMFEALQAAIRYMQRQQHMHRIMANYM-PHNK 150 (194)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCceEEEEEee-CCCH
Confidence 3667789999999999987 79999999998 6675
No 62
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=54.23 E-value=11 Score=28.54 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=17.0
Q ss_pred CeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHH
Q 045812 26 RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELC 64 (105)
Q Consensus 26 ~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c 64 (105)
-|||.||||. -.|..|+-.+++|+
T Consensus 82 ~hVaYiP~~~---------------ViGLSKl~RiV~~~ 105 (180)
T TIGR00063 82 AHVAYIPKDK---------------VIGLSKIARIVEFF 105 (180)
T ss_pred EEEEEecCCc---------------eecHHHHHHHHHHH
Confidence 5999999763 34666777777764
No 63
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=54.11 E-value=19 Score=25.68 Aligned_cols=28 Identities=39% Similarity=0.605 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 55 RSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 55 ~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
+-+.++++.|.+.||+.+.-|.|+.+++
T Consensus 44 Dllge~v~a~h~~Girv~ay~~~~~d~~ 71 (132)
T PF14871_consen 44 DLLGEQVEACHERGIRVPAYFDFSWDED 71 (132)
T ss_pred CHHHHHHHHHHHCCCEEEEEEeeecChH
Confidence 6789999999999999999999997665
No 64
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=53.96 E-value=17 Score=29.93 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEE
Q 045812 50 HEAGVRSLRELVELCCRWGVKVLTVF 75 (105)
Q Consensus 50 h~~G~~~l~~v~~~c~~~GI~~vT~y 75 (105)
+..|++|...+++.|.++|++.||+-
T Consensus 133 ~p~g~rKa~R~m~lA~~f~iPvVtlv 158 (316)
T TIGR00513 133 APEGYRKALRLMKMAERFKMPIITFI 158 (316)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 45788999999999999999999984
No 65
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=53.51 E-value=18 Score=28.71 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEE
Q 045812 49 GHEAGVRSLRELVELCCRWGVKVLTVF 75 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI~~vT~y 75 (105)
-+..|++|..++++.|.++|++.||+.
T Consensus 79 ~~~~g~rKa~R~~~lA~~~~lPvV~lv 105 (256)
T PRK12319 79 PHPEGYRKALRLMKQAEKFGRPVVTFI 105 (256)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 345699999999999999999999985
No 66
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=53.47 E-value=13 Score=28.29 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=17.4
Q ss_pred CeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHH
Q 045812 26 RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCC 65 (105)
Q Consensus 26 ~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~ 65 (105)
-|||.||||. -.|..|+..+++++.
T Consensus 90 ~hIaYiP~~~---------------ViGLSKl~Riv~~~a 114 (188)
T PRK09347 90 AHVAYIPKGK---------------VIGLSKIARIVDFFA 114 (188)
T ss_pred EEEEEeCCCc---------------cccHHHHHHHHHHHH
Confidence 5999999654 346667777776643
No 67
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=52.82 E-value=54 Score=23.48 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH-----HHHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW-----VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~-----~Ev~~Lm~l~~~~~~~ 98 (105)
...++.+++.|.+.|++.|.+=++||.++ .-.+.+++.+.+++++
T Consensus 91 ~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~ 140 (165)
T cd02908 91 ASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEE 140 (165)
T ss_pred HHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 34566677778899999999999999998 3445555777777764
No 68
>PRK15025 ureidoglycolate dehydrogenase; Provisional
Probab=52.70 E-value=60 Score=26.91 Aligned_cols=60 Identities=22% Similarity=0.265 Sum_probs=45.5
Q ss_pred hhHhHHhhhhcc-CCCCCCCCeE-----EEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEe
Q 045812 7 NVILARGGVAGG-LNREAMPRHV-----AVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 7 ~~~~~~~~l~~~-i~~~~~P~HI-----aiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
.++.|-+.+.+. +.+.+-|+.+ ....||+ +|+ ||-.+...+...++-+.+.||-.|++--
T Consensus 48 rlp~Y~~~i~~G~i~~~~~~~i~~~~~a~a~vDg~------~g~----G~~a~~~Am~~aiekA~~~Gi~~v~vrn 113 (349)
T PRK15025 48 RVEYYAERISKGGTNREPEFRFEETGPCSAILHAD------NAA----GQVAAKMGMEHAIETAKQNGVAVVGISR 113 (349)
T ss_pred HHHHHHHHHHcCCcCCCCCeEEEEecCcEEEEECC------CCc----hHHHHHHHHHHHHHHHHHhCEEEEEEeC
Confidence 355676666654 3444455443 4478998 577 9999999999999999999999999864
No 69
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=51.40 E-value=12 Score=28.40 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=17.6
Q ss_pred CeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHH
Q 045812 26 RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCC 65 (105)
Q Consensus 26 ~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~ 65 (105)
-|||.||||. -.|..|+-.+++|+.
T Consensus 87 ~~VaYiP~~~---------------ViGLSKl~RiV~~~a 111 (185)
T cd00642 87 VHIAYIPKDK---------------VIGLSKLARIVEFFS 111 (185)
T ss_pred EEEEEecCCe---------------eeeHHHHHHHHHHHh
Confidence 5899999754 346677777777643
No 70
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=51.24 E-value=57 Score=21.76 Aligned_cols=48 Identities=8% Similarity=0.174 Sum_probs=27.3
Q ss_pred HHhhhhccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEE
Q 045812 11 ARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTV 74 (105)
Q Consensus 11 ~~~~l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~ 74 (105)
++..+.......+-+..|-+..|++=+| +.+.++++.|.+.|+..+++
T Consensus 78 L~~~l~~~~~~~~~~~~v~i~aD~~~~y----------------~~vv~vl~~l~~~g~~~v~l 125 (130)
T PF02472_consen 78 LEARLKELKQKNPDPVRVLIRADKDAPY----------------QDVVDVLDALREAGFTKVSL 125 (130)
T ss_dssp HHHHHHHHCCC-TTS--EEEEE-TTS-H----------------HHHHHHHHHHHHTT---EE-
T ss_pred HHHHHHHhhccCCCcceEEEEeCCCCCH----------------HHHHHHHHHHHHcCCCEEEE
Confidence 3444444444333334799999998444 47899999999999998875
No 71
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=50.84 E-value=21 Score=29.47 Aligned_cols=26 Identities=19% Similarity=0.489 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEE
Q 045812 50 HEAGVRSLRELVELCCRWGVKVLTVF 75 (105)
Q Consensus 50 h~~G~~~l~~v~~~c~~~GI~~vT~y 75 (105)
+..|++|...+++.|.++|++-||+-
T Consensus 133 ~peg~rKa~R~m~lA~~f~lPIVtlv 158 (319)
T PRK05724 133 RPEGYRKALRLMKMAEKFGLPIITFI 158 (319)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 45788999999999999999999984
No 72
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=50.39 E-value=63 Score=22.10 Aligned_cols=40 Identities=28% Similarity=0.239 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcC-CCEEEE--EeeccCCHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWG-VKVLTV--FAFSYDNWVEVEFLMKLFE 93 (105)
Q Consensus 54 ~~~l~~v~~~c~~~G-I~~vT~--yafSteN~~Ev~~Lm~l~~ 93 (105)
.+.+.+.++.+.+.| ++..+. +.+..+|.+++..+++.+.
T Consensus 135 ~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~ 177 (216)
T smart00729 135 VEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLK 177 (216)
T ss_pred HHHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHH
Confidence 478889999999999 554333 3344577788888888754
No 73
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=49.66 E-value=77 Score=25.26 Aligned_cols=63 Identities=17% Similarity=0.127 Sum_probs=32.6
Q ss_pred CeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEe-eccCCHHHHHHHHHHHH
Q 045812 26 RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFA-FSYDNWVEVEFLMKLFE 93 (105)
Q Consensus 26 ~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~ya-fSteN~~Ev~~Lm~l~~ 93 (105)
.+|.|=+||.. ..+...+ |..--++++.+.++.+.+.|++...... |+.+|.+|+..+.+++.
T Consensus 125 ~~i~VSLDG~~---e~hd~~~--~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~ 188 (318)
T TIGR03470 125 LTFSVHLDGLR---EHHDASV--CREGVFDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLT 188 (318)
T ss_pred cEEEEEEecCc---hhhchhh--cCCCcHHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHH
Confidence 46888889873 1111110 1111255566666666666665333233 34566666666665553
No 74
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=49.61 E-value=23 Score=23.74 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=28.6
Q ss_pred hHhHHHHHHHHHHHHHHHHh-cCCCEEEEEeeccCCH
Q 045812 47 SAGHEAGVRSLRELVELCCR-WGVKVLTVFAFSYDNW 82 (105)
Q Consensus 47 ~~Gh~~G~~~l~~v~~~c~~-~GI~~vT~yafSteN~ 82 (105)
..|+--|.+-+..++++|.+ .|+..+++.++ .+|-
T Consensus 90 ~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~-~~N~ 125 (162)
T PRK10140 90 WKNRGVASALMREMIEMCDNWLRVDRIELTVF-VDNA 125 (162)
T ss_pred HcCCCHHHHHHHHHHHHHHhhCCccEEEEEEE-cCCH
Confidence 34667788899999999998 79999999888 4554
No 75
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=49.29 E-value=26 Score=30.26 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=32.9
Q ss_pred CeEEEeecCchHHHHhcCCCch--HhHHHHHHHHHHHHHHHHhcCCCEEEEE
Q 045812 26 RHVAVIMDGNVRWARQRGLPSS--AGHEAGVRSLRELVELCCRWGVKVLTVF 75 (105)
Q Consensus 26 ~HIaiImDGNRRwAk~~gl~~~--~Gh~~G~~~l~~v~~~c~~~GI~~vT~y 75 (105)
+-|+||-.-.++-.+.+ +.+. .-+..|++|...+++.|.++|++-||+-
T Consensus 178 rpV~VIandkg~~~ke~-~~rnfG~~~peGyRKAlR~mklAekf~lPIVtLV 228 (431)
T PLN03230 178 MSFMFIGHQKGRNTKEN-IYRNFAMPQPNGYRKALRFMRHAEKFGFPILTFV 228 (431)
T ss_pred EEEEEEEeccCcccccc-cccCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 34666665544332211 1111 1467789999999999999999999985
No 76
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=49.27 E-value=86 Score=23.81 Aligned_cols=29 Identities=14% Similarity=0.377 Sum_probs=24.6
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCCEEEEEe
Q 045812 48 AGHEAGVRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 48 ~Gh~~G~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
.-...+.+.+++.++.|.++|++.|++..
T Consensus 87 ~~r~~~~~~~~~~i~~a~~lG~~~v~~~~ 115 (279)
T TIGR00542 87 AVRQQGLEIMEKAIQLARDLGIRTIQLAG 115 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEecC
Confidence 35567888899999999999999998754
No 77
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=49.19 E-value=29 Score=27.78 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeec------cCCH--HHHHHHHHHHH
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFS------YDNW--VEVEFLMKLFE 93 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafS------teN~--~Ev~~Lm~l~~ 93 (105)
..+.+.+|++.|.+.||+.+-=..|| |-|- ++|..||.+++
T Consensus 187 dl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 187 DLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 46789999999999999999877777 3333 89999988765
No 78
>PF03161 LAGLIDADG_2: LAGLIDADG DNA endonuclease family; InterPro: IPR004860 This is a family of site-specific DNA endonucleases encoded by DNA mobile elements. Similar to the homing endonuclease LAGLIDADG/HNH domain (IPR001982 from INTERPRO), the members of this family are also LAGLIDADG endonucleases. ; GO: 0004519 endonuclease activity; PDB: 3OOR_A 3OOL_A 3C0W_A 1R7M_A 3C0X_A.
Probab=49.04 E-value=25 Score=25.56 Aligned_cols=41 Identities=17% Similarity=0.091 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcC---CCEEEEEeeccCCH--HHHHHHHHHHHHHHH
Q 045812 57 LRELVELCCRWG---VKVLTVFAFSYDNW--VEVEFLMKLFEKSIK 97 (105)
Q Consensus 57 l~~v~~~c~~~G---I~~vT~yafSteN~--~Ev~~Lm~l~~~~~~ 97 (105)
=..++=|..+=| ...-.-..|+|+|| +||..|.+++...+.
T Consensus 106 p~~LA~W~mdDG~~~~~~~~g~~l~T~sFt~~Ev~~L~~~L~~kf~ 151 (178)
T PF03161_consen 106 PLALAYWFMDDGYSKSKKGRGIRLCTNSFTKEEVERLQNILKTKFG 151 (178)
T ss_dssp HHHHHHHHHHHE-STT-S---EEE--TTS-HHHHHHHHHHHHHHH-
T ss_pred HHHhhheeecCCeeecCCCCcEEEEECCCCHHHHHHHHHHHHHHhC
Confidence 345677777778 56667788999999 999999999988763
No 79
>PRK13260 2,3-diketo-L-gulonate reductase; Provisional
Probab=48.87 E-value=67 Score=26.36 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=46.5
Q ss_pred hhHhHHhhhhcc-CCCCCCCCe-----EEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEe
Q 045812 7 NVILARGGVAGG-LNREAMPRH-----VAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 7 ~~~~~~~~l~~~-i~~~~~P~H-----IaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
.++.|-+.+.+. +.+.+-|+- ...++||+ +|+ ||-.+...+...++-+.+.||-.|++.-
T Consensus 48 rlp~Y~~~l~~G~i~~~~~~~v~~~~~a~a~~Dg~------~g~----G~~~~~~am~~aiekAr~~Gi~~v~vrn 113 (332)
T PRK13260 48 RFPRFIQQLENGDIIPDAQPQRVTSLGAIEQWDAQ------RAI----GNLTAKKMMDRAIELARDHGIGLVALRN 113 (332)
T ss_pred HHHHHHHHHHcCCCCCCCCeEEEecCCcEEEEECC------CCc----hHHHHHHHHHHHHHHHHHhCEEEEEEcC
Confidence 356777777664 344455542 45668998 577 9999999999999999999999999865
No 80
>TIGR03175 AllD ureidoglycolate dehydrogenase. This enzyme converts ureidoglycolate to oxalureate in the non-urea-forming catabolism of allantoin (GenProp0687). The pathway has been characterized in E. coli and is observed in the genomes of Entercoccus faecalis and Bacillus licheniformis.
Probab=48.28 E-value=70 Score=26.49 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=44.9
Q ss_pred hhHhHHhhhhcc-CCCCCCCCe-----EEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEe
Q 045812 7 NVILARGGVAGG-LNREAMPRH-----VAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 7 ~~~~~~~~l~~~-i~~~~~P~H-----IaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
.++.|-+.+.+. +.+.+-|+. -..+.||+ +|+ |+-.+...+...++-+.+.||-.|++.-
T Consensus 48 rlp~Y~~~l~~G~i~~~~~~~i~~e~~a~a~vDg~------~g~----G~~a~~~Am~~aiekAr~~Gi~~v~v~n 113 (349)
T TIGR03175 48 RVEYYAERIAKGGITREPTFRFENTGPCTAIFHGD------NGA----GQVAAKMAMEHAIEIAKKSGVAVVGISR 113 (349)
T ss_pred HHHHHHHHHHcCCcCCCCCeEEEEecCcEEEEECC------CCc----hHHHHHHHHHHHHHHHHHhCEEEEEecC
Confidence 356677776654 444444532 33457998 577 9999999999999999999999999864
No 81
>COG1903 CbiD Cobalamin biosynthesis protein CbiD [Coenzyme metabolism]
Probab=48.25 E-value=60 Score=27.48 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=53.1
Q ss_pred hHHhhhhccCC--CCCCCCeEEEeecCc-hHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 10 LARGGVAGGLN--REAMPRHVAVIMDGN-VRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 10 ~~~~~l~~~i~--~~~~P~HIaiImDGN-RRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
-|+..+..+++ .....+||.+.|.-+ .++|++.+....+..-.-.+.+-..++.+.+.|++.+.++-+.
T Consensus 186 a~~~si~~~l~~~r~~~~~~iv~~~Gn~g~~~a~~~~~~~~~~~v~~~n~vG~~l~~a~~~~~~~i~i~G~p 257 (367)
T COG1903 186 AYLASIRSELDVARAAGLDHVVFCPGNTGEDYARKLFILPEQAIVKMGNFVGSMLKEARELGVKEILIFGHP 257 (367)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEccChhHHHHHHHhcCCchHHHhhHHHHHHHHHHHHHhcCCCEEEEEcCh
Confidence 45555555553 223688998887655 4689999888777777777888889999999999999999875
No 82
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=47.95 E-value=38 Score=25.89 Aligned_cols=33 Identities=21% Similarity=0.122 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 49 GHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
|+-.+.+-++..++-|.++||+.|=+=+. .+|.
T Consensus 111 ~KGYA~emLkl~L~~ar~lgi~~Vlvtcd-~dN~ 143 (174)
T COG3981 111 RKGYAKEMLKLALEKARELGIKKVLVTCD-KDNI 143 (174)
T ss_pred ccCHHHHHHHHHHHHHHHcCCCeEEEEeC-CCCc
Confidence 44446778999999999999999988776 6776
No 83
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3.5.4.16 from EC) catalyses the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. The comparison of the sequence of the enzyme from bacterial and eukaryotic sources shows that the structure of this enzyme has been extremely well conserved throughout evolution []. NADPH-dependent nitrile oxidoreductases are involved in the biosynthesis of queuosine, a 7-deazaguanine-modified nucleoside found in tRNA(GUN) of bacteria and eukaryotes []. This entry represents a common fold found in GTP cyclohydrolase I and NADPH-dependent nitrile oxidoreducases [].; PDB: 1A8R_E 1GTP_L 1N3R_O 1N3T_O 1FBX_I 1N3S_B 1A9C_I 1IS8_E 1IS7_G 1WPL_F ....
Probab=47.79 E-value=12 Score=28.32 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=17.6
Q ss_pred CeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHH
Q 045812 26 RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCC 65 (105)
Q Consensus 26 ~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~ 65 (105)
-|||+||||. -.|..|+..+++++.
T Consensus 82 ~~VaYiP~~~---------------viGLSKl~RiV~~~a 106 (179)
T PF01227_consen 82 AHVAYIPGGR---------------VIGLSKLARIVDFFA 106 (179)
T ss_dssp EEEEEE-SSE---------------EE-HHHHHHHHHHHH
T ss_pred EEEEEEeCCc---------------ccChhHHHHHHHHHh
Confidence 5999999776 247788888888754
No 84
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=47.14 E-value=1.1e+02 Score=22.92 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCCEEEEEe
Q 045812 48 AGHEAGVRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 48 ~Gh~~G~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
+-.++..+.+++.++.|.++|++.|+++.
T Consensus 77 ~~r~~~~~~l~~~i~~A~~lGa~~vv~h~ 105 (273)
T smart00518 77 EKVEKSIERLIDEIKRCEELGIKALVFHP 105 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 45667888999999999999999999875
No 85
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=46.78 E-value=28 Score=24.96 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=30.3
Q ss_pred CchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 45 PSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 45 ~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
+..+|...|..-+..+++||.+.|++.+.+.+.+ +|-
T Consensus 136 p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~-~N~ 172 (194)
T PRK10975 136 PGAQGRGIGARLMQAALNWCQARGLTRLRVATQM-GNL 172 (194)
T ss_pred hhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCC-CcH
Confidence 3445777899999999999999999999888874 553
No 86
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=46.48 E-value=35 Score=26.76 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~ 98 (105)
.+.+++.++++.+.||.-+.+..-+-|.+ +|-..+.+...+....
T Consensus 25 ~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g 73 (296)
T TIGR03249 25 EAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKG 73 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCC
Confidence 34578899999999999999999988887 9999998887776554
No 87
>COG4226 HicB Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=46.41 E-value=28 Score=24.92 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=25.1
Q ss_pred CCCchHhHHHHHHHHHHHHHHHHhcCCCEE
Q 045812 43 GLPSSAGHEAGVRSLRELVELCCRWGVKVL 72 (105)
Q Consensus 43 gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~v 72 (105)
|-+...-++.|..++.++++.|.+.|++-=
T Consensus 37 ~~sv~~lk~~~~~s~~~yle~C~~~g~EP~ 66 (111)
T COG4226 37 GDSVKGLKKEGELSLDDYLEFCKERGIEPR 66 (111)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHcCCCCc
Confidence 345566789999999999999999999743
No 88
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=46.21 E-value=38 Score=20.84 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEeecc
Q 045812 49 GHEAGVRSLRELVELCCRWGVKVLTVFAFSY 79 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSt 79 (105)
-+..-+..+..-++++...+++.+++|..|.
T Consensus 41 ~~~aEl~al~~al~~~~~~~~~~i~i~~Ds~ 71 (130)
T cd06222 41 NNRAELLALIEALELALELGGKKVNIYTDSQ 71 (130)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEEEECHH
Confidence 3444556667778888899999999998874
No 89
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=44.89 E-value=70 Score=24.45 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIK 97 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~ 97 (105)
.+.+.+.++|+.+.||.-+.+..-+-|-+ +|-..+.+...+...
T Consensus 17 ~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~ 64 (281)
T cd00408 17 LDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA 64 (281)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC
Confidence 45688999999999999999999888887 899998888877664
No 90
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=44.73 E-value=29 Score=28.72 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEE
Q 045812 49 GHEAGVRSLRELVELCCRWGVKVLTVF 75 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI~~vT~y 75 (105)
-+..|++|...+++.|.++|++.||+.
T Consensus 135 ~~p~g~rKa~Rlm~lA~~f~lPIItlv 161 (322)
T CHL00198 135 PSPGGYRKALRLMKHANKFGLPILTFI 161 (322)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 467788999999999999999999984
No 91
>PF13300 DUF4078: Domain of unknown function (DUF4078)
Probab=44.66 E-value=34 Score=23.21 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=20.4
Q ss_pred EEEEeeccCCH---HHHHHHHHHHHHHHHH
Q 045812 72 LTVFAFSYDNW---VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 72 vT~yafSteN~---~Ev~~Lm~l~~~~~~~ 98 (105)
+++|+||.+== .+.+.|..+-..+...
T Consensus 33 vgfy~FS~Dee~R~~qme~L~~~R~eTe~~ 62 (88)
T PF13300_consen 33 VGFYAFSKDEEERQEQMEELEELRKETEEQ 62 (88)
T ss_pred ceeeecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 78999998665 7888888777665543
No 92
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=44.64 E-value=1.1e+02 Score=21.65 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=41.9
Q ss_pred CeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHH
Q 045812 26 RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSIKSE 99 (105)
Q Consensus 26 ~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l~~~~~~~~ 99 (105)
...||+--|||.|...-+. - +=..+.+++++.+.-|-+|-+. ++++.+.+.+.+.+++.
T Consensus 64 ~~~gV~gSGn~n~g~~fc~--------A------~d~ia~~~~~p~l~k~El~gt~-~Dv~~~~~~~~~~~~~~ 122 (125)
T TIGR00333 64 LLRGVAASGNKVWGDNFAL--------A------GDVISRKLNVPLLYKFELSGTK-NDVELFTQEVQKIVTNF 122 (125)
T ss_pred cEEEEEEcCCCchHHHHHH--------H------HHHHHHHhCCccEEEEecCCCH-HHHHHHHHHHHHHHHHH
Confidence 5799999999999764433 1 2233667888988888888776 67776666666666543
No 93
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=44.48 E-value=92 Score=22.45 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH-----HHHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW-----VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~-----~Ev~~Lm~l~~~~~~~ 98 (105)
.+.++.+++.|.+.+++.|.+=++||-++ +-.+.+++.+.+++.+
T Consensus 98 ~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~ 147 (175)
T cd02907 98 KKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLET 147 (175)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34556677788899999999999999998 3344455566666654
No 94
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=44.06 E-value=51 Score=24.93 Aligned_cols=41 Identities=32% Similarity=0.592 Sum_probs=28.3
Q ss_pred CeEEEeecCchHHHHhcCCCchHhHHHHHHHH-HHHHHHHHhcCCCEEEEEeec
Q 045812 26 RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSL-RELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 26 ~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l-~~v~~~c~~~GI~~vT~yafS 78 (105)
+|||||- .+|+|...| |++++ +++.....+.|++ +|||+-+
T Consensus 2 kkIaIiG--------trGIPa~YG---GfET~ve~L~~~l~~~g~~-v~Vyc~~ 43 (185)
T PF09314_consen 2 KKIAIIG--------TRGIPARYG---GFETFVEELAPRLVSKGID-VTVYCRS 43 (185)
T ss_pred ceEEEEe--------CCCCCcccC---cHHHHHHHHHHHHhcCCce-EEEEEcc
Confidence 6888884 368887765 66664 4455556666776 7888776
No 95
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=43.89 E-value=47 Score=24.66 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=39.7
Q ss_pred CCCCeEEEeec-CchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 23 AMPRHVAVIMD-GNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 23 ~~P~HIaiImD-GNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
|-|.-.|+|+- |-.-.--.-+....-.+++-+..+.+-++++.+.|...|++|..|
T Consensus 16 pG~gG~g~vl~~~~~~~~~s~~~~~tTNNraEl~A~i~AL~~l~~~~~~~v~l~tDS 72 (154)
T COG0328 16 PGPGGWGAVLRYGDGEKELSGGEGRTTNNRAELRALIEALEALKELGACEVTLYTDS 72 (154)
T ss_pred CCCceEEEEEEcCCceEEEeeeeecccChHHHHHHHHHHHHHHHhcCCceEEEEecH
Confidence 34777777765 221110011222455789999999999999999999999999999
No 96
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=43.71 E-value=59 Score=27.12 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=44.6
Q ss_pred eEEEeecCchHHHHhcCCCc-hHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHHHHHH
Q 045812 27 HVAVIMDGNVRWARQRGLPS-SAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKS 95 (105)
Q Consensus 27 HIaiImDGNRRwAk~~gl~~-~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l~~~~ 95 (105)
+|+|=.||- ..-++.-+ ..+-+--.+++.+-+++..+.+|+..++++...+|++.+..+++.+...
T Consensus 116 ~IgISiDGp---~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~vv~~~n~~~~~ei~~~l~~~ 182 (378)
T COG0641 116 LIGISIDGP---EEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTVVNRQNVLHPEEIYHFLKSE 182 (378)
T ss_pred eEEEeccCc---hHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEEEchhHhhCHHHHHHHHHHc
Confidence 899999994 12222111 0011112678888888888899999999999999996666666666443
No 97
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=43.55 E-value=1.1e+02 Score=24.42 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeecc---CCHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSY---DNWVEVEFLMKLFE 93 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSt---eN~~Ev~~Lm~l~~ 93 (105)
.+.+.+.++.+.+.||....-.++.. +|.+++..|++.+.
T Consensus 213 ~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~ 255 (321)
T TIGR03822 213 TAEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFV 255 (321)
T ss_pred CHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHH
Confidence 45677777788888887666555544 66667776666544
No 98
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=43.21 E-value=1e+02 Score=22.71 Aligned_cols=41 Identities=7% Similarity=0.188 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeec---cCCHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFS---YDNWVEVEFLMKLFEK 94 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafS---teN~~Ev~~Lm~l~~~ 94 (105)
.+++.+.++.+.+.|++....+++. .+|.+|+..+.+++.+
T Consensus 142 ~~~v~~~i~~l~~~g~~~~v~~vv~~~~~~n~~ei~~l~~~~~~ 185 (235)
T TIGR02493 142 LQPTLDFAKYLAKRNKPIWIRYVLVPGYTDSEEDIEALAEFVKT 185 (235)
T ss_pred cHHHHHHHHHHHhCCCcEEEEEeeeCCcCCCHHHHHHHHHHHHh
Confidence 4678888999999999865555554 3566888888777653
No 99
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=43.08 E-value=22 Score=27.69 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=16.8
Q ss_pred CeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHH
Q 045812 26 RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVEL 63 (105)
Q Consensus 26 ~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~ 63 (105)
-|||.||||- -.|..|+..++++
T Consensus 96 ahVAYiP~gk---------------V~GlSKiaRiV~~ 118 (195)
T COG0302 96 AHVAYIPDGK---------------VIGLSKIARIVDI 118 (195)
T ss_pred EEEEEcCCCc---------------eecHHHHHHHHHH
Confidence 5999999664 3466777777776
No 100
>PRK10098 putative dehydrogenase; Provisional
Probab=42.84 E-value=92 Score=25.75 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=45.5
Q ss_pred hhHhHHhhhhcc-CCCCCCCCe-----EEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEe
Q 045812 7 NVILARGGVAGG-LNREAMPRH-----VAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 7 ~~~~~~~~l~~~-i~~~~~P~H-----IaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
.++.|-+.+... +.+.+-|+- ...+.||+ +|+ ||-.+...+...++-+.+.||-.|++.-
T Consensus 52 rlp~Y~~~l~~G~i~~~~~~~v~~~~~a~~~vDg~------~g~----G~~a~~~Am~~aie~Ar~~Gi~~v~vrn 117 (350)
T PRK10098 52 MIPSYVRSWSQGHLQLNHHAKIVKDAGAVLTLDGD------RGF----GQVVAHEAMALGIERARQHGICAVALRN 117 (350)
T ss_pred HHHHHHHHHHcCCcCCCCCeEEEecCCcEEEEECC------CCc----cHHHHHHHHHHHHHHHHHhCEEEEEEec
Confidence 355666666654 444444532 45668998 577 9999999999999999999999999875
No 101
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=42.75 E-value=91 Score=26.00 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
..+.+.+.++++.++|+..+++|.++
T Consensus 216 t~e~~~~tl~~~~~l~~~~is~y~L~ 241 (455)
T TIGR00538 216 TKESFAKTLEKVAELNPDRLAVFNYA 241 (455)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 56678888899999999999999885
No 102
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=42.47 E-value=47 Score=25.81 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~ 98 (105)
.+.+.+.++|+.+.||.-+.+...+-|.+ +|-..+++...+....
T Consensus 18 ~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~ 66 (285)
T TIGR00674 18 FAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNG 66 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC
Confidence 34678899999999999999999888887 8998888887776554
No 103
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=42.37 E-value=45 Score=26.80 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=34.6
Q ss_pred CCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEee
Q 045812 23 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAF 77 (105)
Q Consensus 23 ~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yaf 77 (105)
.-|..|.++||.-----...|++.. .+.+++.++++-....||+ ||+|..
T Consensus 83 ~kP~~vtLVPe~r~evTTegGlD~~----~~~~~l~~~v~~L~~~Gir-VSLFiD 132 (243)
T COG0854 83 TKPHQVTLVPEKREEVTTEGGLDVA----GQLDKLRDAVRRLKNAGIR-VSLFID 132 (243)
T ss_pred cCCCeEEeCCCchhhcccccchhhh----hhhhhHHHHHHHHHhCCCe-EEEEeC
Confidence 4599999999987555555566443 2356677777777777776 677665
No 104
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=42.32 E-value=29 Score=23.82 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCCEEEEEeecc
Q 045812 57 LRELVELCCRWGVKVLTVFAFSY 79 (105)
Q Consensus 57 l~~v~~~c~~~GI~~vT~yafSt 79 (105)
..++++.|.++|++.+.+|.-..
T Consensus 14 a~r~~ra~r~~Gi~tv~v~s~~d 36 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAVNSNPD 36 (110)
T ss_dssp HHHHHHHHHHTTSEEEEEEEGGG
T ss_pred HHHHHHHHHHhCCcceeccCchh
Confidence 57889999999999999998653
No 105
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=42.22 E-value=25 Score=27.17 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=17.0
Q ss_pred CeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHH
Q 045812 26 RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELC 64 (105)
Q Consensus 26 ~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c 64 (105)
-|||.||+|. -.|..|+-.+++++
T Consensus 102 ~hVaYiP~~~---------------VvGLSKl~RiV~~~ 125 (201)
T PRK12606 102 AHVAYLPGGK---------------VLGLSKIARIVDMF 125 (201)
T ss_pred EEEEEeCCCc---------------cccHHHHHHHHHHH
Confidence 5999999654 34667777777763
No 106
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=42.19 E-value=11 Score=23.11 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=14.7
Q ss_pred EeeccCCHHHHHHHHHHHH
Q 045812 75 FAFSYDNWVEVEFLMKLFE 93 (105)
Q Consensus 75 yafSteN~~Ev~~Lm~l~~ 93 (105)
||.+.+||.+||.|+.-+.
T Consensus 30 FA~~~~Nf~~lD~Li~~l~ 48 (49)
T smart00586 30 FAENNDNFQALDDLISQLR 48 (49)
T ss_pred HHcCchhHHHHHHHHHHhc
Confidence 5667889999998887653
No 107
>PF02661 Fic: Fic/DOC family; InterPro: IPR003812 This entry contains the Fic (filamentation induced by cAMP) protein and doc (death on curing) protein. The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate, indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism []. This family contains a central conserved motif HPFXXGNG in most members. The exact molecular function of these proteins is uncertain. P1 lysogens of Escherichia coli carry the prophage as a stable low copy number plasmid. The frequency with which viable cells cured of prophage are produced is about 10(-5) per cell per generation []. A significant part of this remarkable stability can be attributed to a plasmid-encoded mechanism that causes death of cells that have lost P1 []. In other words, the lysogenic cells appear to be addicted to the presence of the prophage. The plasmid withdrawal response depends on a gene named doc (death on curing) that is represented by this family.; PDB: 3SHG_A 3N3V_A 3N3U_A 2F6S_B 2JK8_B 2VZA_D 2VY3_A 3LET_B 3EQX_A 3SE5_D ....
Probab=41.95 E-value=9.2 Score=24.03 Aligned_cols=9 Identities=67% Similarity=0.682 Sum_probs=7.8
Q ss_pred ecCchHHHH
Q 045812 32 MDGNVRWAR 40 (105)
Q Consensus 32 mDGNRRwAk 40 (105)
.|||+|-|+
T Consensus 82 ~dGNgRtar 90 (97)
T PF02661_consen 82 RDGNGRTAR 90 (97)
T ss_dssp SSHHHHHHH
T ss_pred cCCCHHHHH
Confidence 699999887
No 108
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=41.93 E-value=81 Score=25.36 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=36.6
Q ss_pred CCCeEEE-eecCch-----HHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 24 MPRHVAV-IMDGNV-----RWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 24 ~P~HIai-ImDGNR-----RwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
-|.-+|+ |.|.+. .++...+ ..--+.+-+..+..-++++.++|++.|++|..|
T Consensus 16 g~aG~G~vi~~~~~~~~~~~~~~~~~--~~tnn~AE~~All~gL~~a~~~g~~~v~i~~DS 74 (372)
T PRK07238 16 GPAGYGAVVWDADRGEVLAERAEAIG--RATNNVAEYRGLIAGLEAAAELGATEVEVRMDS 74 (372)
T ss_pred CceEEEEEEEeCCCCcEEEEeecccC--CCCchHHHHHHHHHHHHHHHhCCCCeEEEEeCc
Confidence 3555655 456542 2333222 333457788889999999999999999999998
No 109
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=41.66 E-value=1.1e+02 Score=25.62 Aligned_cols=59 Identities=17% Similarity=0.284 Sum_probs=42.9
Q ss_pred hHhHHhhhhc-cCCCCCCCCe-----EEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEe
Q 045812 8 VILARGGVAG-GLNREAMPRH-----VAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 8 ~~~~~~~l~~-~i~~~~~P~H-----IaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
++.|-+.|.. .+.+...|+= .-.+.||+ +|+ ||-.....+...++-|.+.||-.+++--
T Consensus 52 ~p~yi~~l~~G~i~~~a~~~i~~~~~a~~~iDa~------~g~----G~~a~~~am~~aie~Ak~~Gia~vav~n 116 (349)
T COG2055 52 LPGYVRRLKAGKINPDAEPEIVREAPAVAVLDAD------GGF----GQVAAKKAMELAIEKAKQHGIAAVAVRN 116 (349)
T ss_pred HHHHHHHHHcCCcCCCCceEEEeecCcEEEEeCC------CCc----chHHHHHHHHHHHHHHHHhCeeEEEEec
Confidence 3445555444 3555554543 35677988 567 9999999999999999999999998754
No 110
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=41.19 E-value=39 Score=23.15 Aligned_cols=21 Identities=0% Similarity=0.050 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEE
Q 045812 54 VRSLRELVELCCRWGVKVLTV 74 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~ 74 (105)
++.+.++++.|.+.|++.+++
T Consensus 97 ~~~vv~v~d~~~~~G~~~v~l 117 (121)
T TIGR02804 97 FQDFVTITDMLKAKEHENVQI 117 (121)
T ss_pred HhHHHHHHHHHHHcCCCeEEE
Confidence 457889999999999999986
No 111
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=41.00 E-value=49 Score=21.16 Aligned_cols=64 Identities=20% Similarity=0.217 Sum_probs=43.8
Q ss_pred CCcchhHhHHhhhhccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeecc
Q 045812 3 LNRNNVILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSY 79 (105)
Q Consensus 3 ~~~~~~~~~~~~l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSt 79 (105)
++-.|++.++..+...+.. +-|++|-|=+.+- +.. -..|+..+.++.+.|.+.|.+ +.+...+.
T Consensus 22 l~~~~~~~~~~~l~~~~~~-~~~~~vvidls~v---------~~i--Dssgl~~L~~~~~~~~~~~~~-~~l~~~~~ 85 (108)
T TIGR00377 22 LDAHTAPLLREKVTPAAER-TGPRPIVLDLEDL---------EFM--DSSGLGVLLGRYKQVRRVGGQ-LVLVSVSP 85 (108)
T ss_pred cccccHHHHHHHHHHHHHh-cCCCeEEEECCCC---------eEE--ccccHHHHHHHHHHHHhcCCE-EEEEeCCH
Confidence 4556788888877766653 3477776666544 222 256889999999999998874 66666543
No 112
>PTZ00484 GTP cyclohydrolase I; Provisional
Probab=40.98 E-value=22 Score=28.64 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=16.0
Q ss_pred CeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHH
Q 045812 26 RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELC 64 (105)
Q Consensus 26 ~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c 64 (105)
-|||+||||. -.|..|+..+++|+
T Consensus 161 ~hIaYiP~~~---------------ViGLSKl~RiV~~~ 184 (259)
T PTZ00484 161 CTIGYIPNKK---------------VLGLSKFARIIEIF 184 (259)
T ss_pred EEEEEecCCe---------------EecHHHHHHHHHHH
Confidence 5899999764 23556666666653
No 113
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=40.93 E-value=1.7e+02 Score=24.07 Aligned_cols=64 Identities=16% Similarity=0.078 Sum_probs=42.8
Q ss_pred eEEEeecCchHHHHhcCCCch--HhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHHHHH
Q 045812 27 HVAVIMDGNVRWARQRGLPSS--AGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEK 94 (105)
Q Consensus 27 HIaiImDGNRRwAk~~gl~~~--~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l~~~ 94 (105)
.|+|=.||... .++.-+. .| +--++++.+-++...+.||+.-...+.+.+|.+++..+++++.+
T Consensus 127 ~v~ISlDG~~~---~hD~~R~~~~g-~gsf~~v~~~i~~l~~~gi~~~i~~vv~~~n~~~~~e~~~~~~~ 192 (412)
T PRK13745 127 LVGVSIDGPQE---FHDEYRKNKMG-KPSFVKVMKGINLLKKHGVEWNAMAVVNDFNADYPLDFYHFFKE 192 (412)
T ss_pred EEEEEecCCHH---HhhhhcCCCCC-CccHHHHHHHHHHHHHcCCCEEEEEEEcCCccccHHHHHHHHHH
Confidence 57777777632 1221110 01 11367778888888899999888899999999777777776653
No 114
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=40.59 E-value=91 Score=24.18 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~ 98 (105)
.+.+.+.++|+.+.||+-+.+...+-|-+ +|-..+++...+....
T Consensus 21 ~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~ 69 (292)
T PRK03170 21 FAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNG 69 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCC
Confidence 45678899999999999999998888887 8999998888776543
No 115
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=40.58 E-value=82 Score=24.33 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIK 97 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~ 97 (105)
.+.+++.++++.+.||.-+.+...+-|.+ +|-..|.+...+...
T Consensus 21 ~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~ 68 (289)
T PF00701_consen 21 EDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA 68 (289)
T ss_dssp HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc
Confidence 45788999999999999999998888888 899888888776654
No 116
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=39.92 E-value=99 Score=24.83 Aligned_cols=28 Identities=7% Similarity=0.233 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeeccC
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFSYD 80 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafSte 80 (105)
..+.+.+.++++.++|+.++++|.++.+
T Consensus 164 t~e~~~~~l~~~~~l~~~~is~y~l~~~ 191 (374)
T PRK05799 164 TLEDWKETLEKVVELNPEHISCYSLIIE 191 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeccEec
Confidence 4567788888899999999999988743
No 117
>PRK12928 lipoyl synthase; Provisional
Probab=39.84 E-value=27 Score=27.83 Aligned_cols=31 Identities=16% Similarity=0.049 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEeecc
Q 045812 49 GHEAGVRSLRELVELCCRWGVKVLTVFAFSY 79 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSt 79 (105)
||-.--+-+.+.++.+.++|+..++++.|+.
T Consensus 213 G~GET~ed~~etl~~Lrel~~d~v~i~~Yl~ 243 (290)
T PRK12928 213 GLGETEDEVIETLRDLRAVGCDRLTIGQYLR 243 (290)
T ss_pred eCCCCHHHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 5544455666666667777777777777654
No 118
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=39.61 E-value=80 Score=24.24 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=31.1
Q ss_pred CCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 23 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 23 ~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
+.|+||.+|=|= +.-|+ ++.++.+...+.|++.|.+|++.
T Consensus 182 ~~~~~vlLvDDV---------------~TTGa-Tl~~~~~~L~~~Ga~~v~~~~la 221 (225)
T COG1040 182 EEPKNVLLVDDV---------------YTTGA-TLKEAAKLLREAGAKRVFVLTLA 221 (225)
T ss_pred CCCCeEEEEecc---------------cccHH-HHHHHHHHHHHcCCceEEEEEEE
Confidence 455789888652 23343 78889999999999999999884
No 119
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=39.49 E-value=76 Score=25.07 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=34.2
Q ss_pred HHHHHH-HHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHHHHh
Q 045812 53 GVRSLR-ELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSIKSELEG 102 (105)
Q Consensus 53 G~~~l~-~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l~~~~~~~~~~~ 102 (105)
++.+++ +.-+.|.+.|++-+.-|+-+.+..+++..=|+-++..|.+..++
T Consensus 53 ~f~~lk~~A~r~~~~~G~rFlgG~aVP~~~~~~l~~~L~~i~~eF~~~k~~ 103 (257)
T PF11348_consen 53 PFSKLKKRAERLCLKVGVRFLGGYAVPEDKAEELAEELEDIKTEFEQEKQD 103 (257)
T ss_pred HHHHHHHHHHHHHHHcCCcccceeEcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433 35567999999999999999888866665555555555554443
No 120
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=39.48 E-value=63 Score=25.68 Aligned_cols=73 Identities=12% Similarity=0.002 Sum_probs=48.7
Q ss_pred CeEEEeecC---chHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH--HHHHHHHHHHHHHHHH
Q 045812 26 RHVAVIMDG---NVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW--VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 26 ~HIaiImDG---NRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~--~Ev~~Lm~l~~~~~~~ 98 (105)
.|+.+-++. .+++|+..|.+..--+..+...--.+.-||...||+.+|+.+=+..-| +.++...+-+.+++..
T Consensus 130 p~v~~~~~~~~~~~~lA~~fg~~~i~~~~~~~~~~g~~~~~~~~~g~paitvE~G~~~~~~~~~~~~~~~gi~~~L~~ 207 (298)
T cd06253 130 PQVRLYKTGSESLLPLAKFLNLDVIWIHPSSTVDEATLAHNLQVWGTPAFSVEMGVGMRIDKEYANQIVSGILRFMTK 207 (298)
T ss_pred CeEEEcCCCCHHHHHHHHHhCCCEEEecCCCCcchhhHHHHHHHhCCeEEEEEcCCCcccCHHHHHHHHHHHHHHHHH
Confidence 488887654 889999999876432211100001245778899999999999887777 6666666666666654
No 121
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=39.17 E-value=97 Score=23.61 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCCC---EEEEEeeccCCH-H--HHHHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVK---VLTVFAFSYDNW-V--EVEFLMKLFEKSIKSEL 100 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~---~vT~yafSteN~-~--Ev~~Lm~l~~~~~~~~~ 100 (105)
...+..+++||.+.|++ +..+|...+-.| . ..+.+.+.+..++.+.+
T Consensus 15 ~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~~~~~~~~~~~~i~~v~ 67 (254)
T smart00633 15 FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNLSKETLLARLENHIKTVV 67 (254)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcCCHHHHHHHHHHHHHHHH
Confidence 45667799999999998 455676666677 2 23344445555554443
No 122
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=39.12 E-value=84 Score=24.65 Aligned_cols=39 Identities=33% Similarity=0.502 Sum_probs=27.5
Q ss_pred Ce-EEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 26 RH-VAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 26 ~H-IaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
=| +|++.||. ..... +.+..++++|.+.||+.|-+.+|+
T Consensus 30 lHl~GLlSdGG--------VHSh~------~Hl~al~~~a~~~gv~~V~vH~f~ 69 (223)
T PF06415_consen 30 LHLMGLLSDGG--------VHSHI------DHLFALIKLAKKQGVKKVYVHAFT 69 (223)
T ss_dssp EEEEEEESS-S--------SS--H------HHHHHHHHHHHHTT-SEEEEEEEE
T ss_pred EEEEEEecCCC--------ccccH------HHHHHHHHHHHHcCCCEEEEEEec
Confidence 36 78888986 43333 456678999999999999999996
No 123
>PF02615 Ldh_2: Malate/L-lactate dehydrogenase; InterPro: IPR003767 The malate dehydrogenase (MDH) of some extremophilies is more similar to the L-lactate dehydrogenases (L-LDH) 1.1.1.27 from EC from various sources than to other MDHs []. This family consists of bacterial and archaeal malate/L-lactate dehydrogenases. The archaebacterial malate dehydrogenase 1.1.1.37 from EC, 1.1.1.82 from EC deviates from the eubacterial and eukaryotic enzymes having a low selectivity for the coenzyme (NAD(H) or NADP(H)) and catalyzing the reduction of oxalacetate to malate more efficiently than the reverse reaction [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1VBI_A 2G8Y_B 2X06_H 1Z2I_B 1X0A_A 1V9N_A 1XRH_G 3I0P_A 2CWH_B 2CWF_B ....
Probab=39.04 E-value=76 Score=26.04 Aligned_cols=60 Identities=22% Similarity=0.353 Sum_probs=45.1
Q ss_pred hhHhHHhhhhcc-CCCCCCCCeE-----EEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEe
Q 045812 7 NVILARGGVAGG-LNREAMPRHV-----AVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 7 ~~~~~~~~l~~~-i~~~~~P~HI-----aiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
.++.|-+.+.+. +.+..-|+-+ ..+.||+ +|+ ||-.+...+...++-+.+.||-.|++--
T Consensus 48 rlp~Y~~~l~~G~i~~~~~~~i~~~~~a~~~vDg~------~g~----G~~~~~~A~~~aiekA~~~Gia~v~vrn 113 (335)
T PF02615_consen 48 RLPRYVKRLRSGRINPRAEPKIVRETPASAVVDGD------NGF----GQVAAKFAMELAIEKAKEHGIAAVAVRN 113 (335)
T ss_dssp GHHHHHHHHHTTSSBSS---EEEEEETTEEEEEET------TBB----HHHHHHHHHHHHHHHHHHHSEEEEEEEE
T ss_pred HHHHHHHHhhcCcccCCCCeEEEeccCeEEEEECC------CCc----cHHHHHHHHHHHHHHHHHcCEEEEEEec
Confidence 466777777764 4544555432 4688998 567 9999999999999999999999998865
No 124
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=38.88 E-value=1.4e+02 Score=23.97 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEee
Q 045812 52 AGVRSLRELVELCCRWGVKVLTVFAF 77 (105)
Q Consensus 52 ~G~~~l~~v~~~c~~~GI~~vT~yaf 77 (105)
...+.+.++++++.++|++.+.+..+
T Consensus 166 ~N~~~i~~~~~~~~~lgv~~i~~~~~ 191 (378)
T PRK05301 166 HNIDQIPRIIELAVELGADRLELANT 191 (378)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 34667899999999999999987543
No 125
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=38.62 E-value=1.1e+02 Score=21.77 Aligned_cols=49 Identities=12% Similarity=0.281 Sum_probs=28.4
Q ss_pred CCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHH-HHhcC-CCEEEEEeeccC
Q 045812 21 REAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVEL-CCRWG-VKVLTVFAFSYD 80 (105)
Q Consensus 21 ~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~-c~~~G-I~~vT~yafSte 80 (105)
....|++|.|++|.-+-.. |. ..+.+++.+.. ...+. =..+++..||.+
T Consensus 9 ~~~~p~~vv~llD~SgSM~---------~~--~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~ 59 (190)
T cd01463 9 AATSPKDIVILLDVSGSMT---------GQ--RLHLAKQTVSSILDTLSDNDFFNIITFSNE 59 (190)
T ss_pred cccCCceEEEEEECCCCCC---------cH--HHHHHHHHHHHHHHhCCCCCEEEEEEeCCC
Confidence 3467999999999873221 11 12333333332 22333 248999999865
No 126
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=38.52 E-value=45 Score=28.46 Aligned_cols=49 Identities=12% Similarity=0.251 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH-----HHHHHHHHHHHHHHHHH
Q 045812 49 GHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW-----VEVEFLMKLFEKSIKSE 99 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~-----~Ev~~Lm~l~~~~~~~~ 99 (105)
-+..|++|..++++.|..++|+-||+=--+ =| +|-..+.....+.+...
T Consensus 310 ~~~~~a~K~arfi~lcd~~~iPlv~l~dtp--Gf~~g~~~E~~g~~~~ga~~~~a~ 363 (493)
T PF01039_consen 310 LDPDGARKAARFIRLCDAFNIPLVTLVDTP--GFMPGPEAERAGIIRAGARLLYAL 363 (493)
T ss_dssp B-HHHHHHHHHHHHHHHHTT--EEEEEEEC--EB--SHHHHHTTHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhhCCceEEEeecc--cccccchhhhcchHHHHHHHHHHH
Confidence 377899999999999999999999986321 12 66556665555555443
No 127
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=38.28 E-value=94 Score=26.69 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeeccC----------CH-----HHHHHHHHHHHHHHHH
Q 045812 52 AGVRSLRELVELCCRWGVKVLTVFAFSYD----------NW-----VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 52 ~G~~~l~~v~~~c~~~GI~~vT~yafSte----------N~-----~Ev~~Lm~l~~~~~~~ 98 (105)
.+.+.+.+.++.+.++++..+|+|.++.+ .+ +|...+++...+.+.+
T Consensus 333 Et~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~ 394 (488)
T PRK08207 333 EGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKE 394 (488)
T ss_pred CCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 35677888899999999999999999841 11 6677788888777764
No 128
>TIGR01766 tspaseT_teng_C transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam model pfam01385, and other proteins.
Probab=37.90 E-value=64 Score=20.15 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHH-HHhcCCCEEEEEe
Q 045812 49 GHEAGVRSLRELVEL-CCRWGVKVLTVFA 76 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~-c~~~GI~~vT~ya 76 (105)
=|..+..++.+.++| |.+.||+.+.+-.
T Consensus 50 ~~~~~~~~~~~~l~yka~~~Gi~v~~v~~ 78 (82)
T TIGR01766 50 LHQWSFRKLISKIKYKAEEYGIEVIEVNP 78 (82)
T ss_pred HHhhhHHHHHHHHHHHHHHcCCeEEEeCc
Confidence 367889999999999 7888999988754
No 129
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from most bacteria (gene deoD), which catalyses the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. Uridine phosphorylase (2.4.2.3 from EC) (UdRPase) from bacteria (gene udp) and mammals, which catalyses the cleavage of uridine into uracil and ribose-1-phosphate, the products of the reaction are used either as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from Sulfolobus solfataricus []. Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from mammals as well as from some bacteria (gene deoD). This enzyme catalyzes the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from eukaryotes []. ; GO: 0003824 catalytic activity, 0009116 nucleoside metabolic process; PDB: 3OZE_A 1K27_A 1CB0_A 1CG6_A 1SD1_A 3LN5_C 3OZD_B 3OZC_A 1SD2_A 1U1G_C ....
Probab=37.87 E-value=1e+02 Score=22.42 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=48.2
Q ss_pred CCCCCeEEEeecCchHHHHh---------cCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeecc-------CCH--H
Q 045812 22 EAMPRHVAVIMDGNVRWARQ---------RGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSY-------DNW--V 83 (105)
Q Consensus 22 ~~~P~HIaiImDGNRRwAk~---------~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSt-------eN~--~ 83 (105)
..+|=|.|.+.-++..++.. .|.+..+ . -.--+...|.+.|++.+.+.+-|. ++| +
T Consensus 139 ~~~~~~~G~~~s~~~~~~~~~~~~~~~~~~g~~~vd--M----E~aa~~~~a~~~~ip~~~i~~isD~~~~~~~~~~~~~ 212 (234)
T PF01048_consen 139 LGIPVHEGPIASGDSFYRETEAEIELLQKFGADAVD--M----ESAAVAQAARERGIPFIAIRGISDYADGGDDDEWTFE 212 (234)
T ss_dssp TTSTEEEEEEEEESSSSGSHHHHHHHHHHTTEEEEE--S----SHHHHHHHHHHTT-EEEEEEEEEEETTTTSSSSSHHH
T ss_pred cccccccceEEEEeeeccchhhHHHHHHhccccccc--c----hHHHHHHHHHHcCCCEEEEEEEEcCCccCCCCCCCHH
Confidence 34677888887777443322 1211100 0 123477889999999999999874 445 6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 045812 84 EVEFLMKLFEKSIKSELEGFI 104 (105)
Q Consensus 84 Ev~~Lm~l~~~~~~~~~~~~~ 104 (105)
+...-++.........+.+++
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~l 233 (234)
T PF01048_consen 213 EFKEFLQLAAENAAAILEELL 233 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777766654
No 130
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=37.59 E-value=58 Score=26.06 Aligned_cols=79 Identities=18% Similarity=0.303 Sum_probs=55.9
Q ss_pred hhHhHHhhhhccCCCCCCCCeEEEeecCchHH------HHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccC
Q 045812 7 NVILARGGVAGGLNREAMPRHVAVIMDGNVRW------ARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYD 80 (105)
Q Consensus 7 ~~~~~~~~l~~~i~~~~~P~HIaiImDGNRRw------Ak~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSte 80 (105)
+.+.++..|...+. ..|..|.|..--|||= +...+. ..+--.-.+.+.|-+..+..+|+. ||+|.|+.+
T Consensus 123 ~yk~LKs~LeGgle--~~P~NvliyATSNRRHLv~E~~~d~~~~--~~~eih~~d~~eEklSLsDRFGL~-l~F~~~~q~ 197 (249)
T PF05673_consen 123 EYKALKSVLEGGLE--ARPDNVLIYATSNRRHLVPESFSDREDI--QDDEIHPSDTIEEKLSLSDRFGLW-LSFYPPDQE 197 (249)
T ss_pred HHHHHHHHhcCccc--cCCCcEEEEEecchhhccchhhhhccCC--CccccCcchHHHHHHhHHHhCCcE-EEecCCCHH
Confidence 35566666666664 4599999999999983 332221 112233457889999999999985 999999998
Q ss_pred CH-HHHHHHHH
Q 045812 81 NW-VEVEFLMK 90 (105)
Q Consensus 81 N~-~Ev~~Lm~ 90 (105)
-+ +=|+.+.+
T Consensus 198 ~YL~IV~~~~~ 208 (249)
T PF05673_consen 198 EYLAIVRHYAE 208 (249)
T ss_pred HHHHHHHHHHH
Confidence 88 66666654
No 131
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=37.42 E-value=1.1e+02 Score=24.52 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeecc
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFSY 79 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafSt 79 (105)
..+.+.+.++++.++|++++++|.++.
T Consensus 165 t~~~~~~~l~~~~~l~~~~is~y~l~~ 191 (360)
T TIGR00539 165 TLNSLKEELKLAKELPINHLSAYALSV 191 (360)
T ss_pred CHHHHHHHHHHHHccCCCEEEeecceE
Confidence 445667777777777777777777763
No 132
>PF11432 DUF3197: Protein of unknown function (DUF3197); InterPro: IPR024443 This domain, whose function is unknown, is found in bacterial proteins.; PDB: 1WN9_A 1WNA_A.
Probab=37.04 E-value=1.6e+02 Score=21.15 Aligned_cols=64 Identities=27% Similarity=0.263 Sum_probs=36.2
Q ss_pred cCCCCCCCC-eEEEeec--CchHHHHhcCCC----------chHhH---HHHHHHHHHHHHHHHhcCCCEEEEEeeccCC
Q 045812 18 GLNREAMPR-HVAVIMD--GNVRWARQRGLP----------SSAGH---EAGVRSLRELVELCCRWGVKVLTVFAFSYDN 81 (105)
Q Consensus 18 ~i~~~~~P~-HIaiImD--GNRRwAk~~gl~----------~~~Gh---~~G~~~l~~v~~~c~~~GI~~vT~yafSteN 81 (105)
.++.-+.|. -|-+|.| |.|-||+..-+- ...|- ..|.+.+.+++.|..+.|+ ..+==+.|..-
T Consensus 7 aLk~~~~p~~~v~liTDwQd~R~~ARYa~ll~~gk~~llt~dAFGPafG~~G~~ALaELv~wl~~~G~-~f~EaVl~p~e 85 (113)
T PF11432_consen 7 ALKGLRFPEAKVYLITDWQDQRPQARYALLLRGGKEPLLTPDAFGPAFGPEGERALAELVRWLQERGA-RFYEAVLSPSE 85 (113)
T ss_dssp HHTT---TT-EEEEEEE--SSCCC--EEEEEE-SS-EEEEEEEESTTS-TTHHHHHHHHHHHHHHTT--EEEEEEE-GGG
T ss_pred HHhcCCCCCceEEEEeccccchhhhhhhhheecCCcccccccccCcccCccHHHHHHHHHHHHHHcCC-chhheecCHHH
Confidence 344445665 3556776 455555533110 11121 4689999999999999999 66666777776
Q ss_pred H
Q 045812 82 W 82 (105)
Q Consensus 82 ~ 82 (105)
|
T Consensus 86 ~ 86 (113)
T PF11432_consen 86 F 86 (113)
T ss_dssp H
T ss_pred H
Confidence 6
No 133
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=37.02 E-value=70 Score=25.45 Aligned_cols=50 Identities=16% Similarity=0.337 Sum_probs=37.0
Q ss_pred CCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 24 ~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
-|.-|.++||..----...|++.. ...+.+.+++.-+.+.||+ ||+|...
T Consensus 83 kP~~vtLVPEkr~E~TTegGldv~----~~~~~l~~~i~~l~~~gI~-VSLFiDP 132 (234)
T cd00003 83 KPHQVTLVPEKREELTTEGGLDVA----GQAEKLKPIIERLKDAGIR-VSLFIDP 132 (234)
T ss_pred CCCEEEECCCCCCCccCCccchhh----cCHHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 488999999987443334444332 2457889999999999996 9999876
No 134
>PRK07922 N-acetylglutamate synthase; Validated
Probab=36.95 E-value=45 Score=23.82 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=28.5
Q ss_pred hHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 47 SAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 47 ~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
..|.--|..-+..+.++|.+.|++.+.+..++. +|
T Consensus 82 ~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~~~-~f 116 (169)
T PRK07922 82 ARGRGVGHAIVERLLDVARELGLSRVFVLTFEV-EF 116 (169)
T ss_pred HhCCCHHHHHHHHHHHHHHHcCCCEEEEEeccH-HH
Confidence 346666888899999999999999998887763 44
No 135
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=36.95 E-value=71 Score=25.48 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKSE 99 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~~ 99 (105)
.+.+.++++|..+.||.-|.+...+=|.. +|-..+++...+.....
T Consensus 24 ~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~gr 73 (299)
T COG0329 24 EEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGR 73 (299)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCC
Confidence 56789999999999999999999988887 99999999888877653
No 136
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=36.80 E-value=83 Score=19.95 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
-.+.+..++++|.++||+.. .|+++-+
T Consensus 60 ~~~Ni~~~l~~~~~~gi~~~---~~~~~Dl 86 (107)
T cd00014 60 RLENINLALNFAEKLGVPVV---NFDAEDL 86 (107)
T ss_pred HHHHHHHHHHHHHHcCCcee---ccCHHHH
Confidence 34678889999999999975 5665554
No 137
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=36.55 E-value=60 Score=21.15 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=42.2
Q ss_pred CCcchhHhHHhhhhccCCCCC-----CCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEE
Q 045812 3 LNRNNVILARGGVAGGLNREA-----MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVL 72 (105)
Q Consensus 3 ~~~~~~~~~~~~l~~~i~~~~-----~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~v 72 (105)
|.-.|+..+++.+.+.+...+ -+.-=.+|+|-. +++-.+ ..|+..+.++.+.|...|++-+
T Consensus 19 l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s-------~v~~iD--ssgi~~L~~~~~~~~~~g~~~~ 84 (117)
T PF01740_consen 19 LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMS-------GVSFID--SSGIQALVDIIKELRRRGVQLV 84 (117)
T ss_dssp ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEET-------TESEES--HHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEE-------eCCcCC--HHHHHHHHHHHHHHHHCCCEEE
Confidence 445678888888887776553 122234566665 554433 7799999999999999998743
No 138
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=35.91 E-value=45 Score=25.15 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=30.8
Q ss_pred CchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 45 PSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 45 ~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
+...|+--|..-+..+++||.+.|++.+.++++ .+|-
T Consensus 236 p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~-~~N~ 272 (292)
T TIGR03448 236 PAAQGRGLGDALTLIGLHHLAARGLPAVMLYVE-ADNE 272 (292)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEe-CCCH
Confidence 445678889999999999999999999999987 4453
No 139
>PRK14976 5'-3' exonuclease; Provisional
Probab=35.75 E-value=17 Score=28.91 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=38.4
Q ss_pred HHhhhhccCCCCCCCCeEEEeecCchH-HHHhcCCCchHhHHHHH-----HHHHHHHHHHHhcCCCEEEEEeeccCCHHH
Q 045812 11 ARGGVAGGLNREAMPRHVAVIMDGNVR-WARQRGLPSSAGHEAGV-----RSLRELVELCCRWGVKVLTVFAFSYDNWVE 84 (105)
Q Consensus 11 ~~~~l~~~i~~~~~P~HIaiImDGNRR-wAk~~gl~~~~Gh~~G~-----~~l~~v~~~c~~~GI~~vT~yafSteN~~E 84 (105)
+-..+.+-+.. .-|.|++++-|+.+. | |+.=.+...+++... ..+..+-+++..+||+.+..- ++ |
T Consensus 42 f~~~l~~ll~~-~~p~~~~v~fD~~~~~~-R~~l~p~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~~-----g~-E 113 (281)
T PRK14976 42 FLTMIFKILKK-LNPSYILIAFDAGRKTF-RHQLYDEYKQGRKKTPESLISQIPLLKKILKLAGIKWEEQP-----GY-E 113 (281)
T ss_pred HHHHHHHHHHh-cCCCEEEEEEECCCCcc-cccccHHHhcCCCCCCHHHHHHHHHHHHHHHHCCCCEEecC-----Cc-C
Confidence 34444444443 348999999998532 3 222233333333221 123334445666898877543 33 4
Q ss_pred HHHHHHHHHH
Q 045812 85 VEFLMKLFEK 94 (105)
Q Consensus 85 v~~Lm~l~~~ 94 (105)
=|.++..+..
T Consensus 114 ADDviatla~ 123 (281)
T PRK14976 114 ADDLIGSLAK 123 (281)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 140
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=35.68 E-value=1.1e+02 Score=24.64 Aligned_cols=39 Identities=10% Similarity=0.288 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEE---EeeccCCHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTV---FAFSYDNWVEVEFLMKLF 92 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~---yafSteN~~Ev~~Lm~l~ 92 (105)
.+.+.+.++++.+.|++.+++ |.+..+|.+++...++.+
T Consensus 135 ~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~ 176 (360)
T TIGR00539 135 AKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLA 176 (360)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHH
Confidence 567888999999999998775 777778876655555543
No 141
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=35.61 E-value=1.1e+02 Score=25.50 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
..+.+.+.++++.++|+.++++|.++
T Consensus 216 t~e~~~~~l~~~~~l~~~~i~~y~l~ 241 (453)
T PRK09249 216 TPESFARTLEKVLELRPDRLAVFNYA 241 (453)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEccCc
Confidence 45678889999999999999999876
No 142
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=35.44 E-value=1.1e+02 Score=23.79 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHh-cCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCR-WGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 54 ~~~l~~v~~~c~~-~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~ 98 (105)
.+.+++.++|+.+ .||.-+.+-..+-|.+ +|-..+++...+....
T Consensus 23 ~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~ 72 (293)
T PRK04147 23 EQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG 72 (293)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC
Confidence 3467889999999 9999999999999987 9999998888776653
No 143
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs. Poly(A) polymerase, the enzyme at the heart of the polyadenylation machinery, is a template-independent RNA polymerase which specifically incorporates ATP at the 3' end of mRNA. The crystal structure of bovine poly(A) polymerase bound to an ATP analog at 2.5 A resolutio has been determined []. The structure revealed expected and unexpected similarities to other proteins. As expected, the catalytic domain of poly(A) polymerase shares substantial structural homology with other nucleotidyl transferases such as DNA polymerase beta and kanamycin transferase. The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta-sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different.; GO: 0004652 polynucleotide adenylyltransferase activity, 0006351 transcription, DNA-dependent; PDB: 1Q79_A 1Q78_A 1F5A_A 2O1P_A 2HHP_A 3C66_B 1FA0_A 2Q66_A.
Probab=35.38 E-value=25 Score=27.82 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=25.6
Q ss_pred hHHHHhcCCC-chHhHHHHHHHHHHHHHHHHhc
Q 045812 36 VRWARQRGLP-SSAGHEAGVRSLRELVELCCRW 67 (105)
Q Consensus 36 RRwAk~~gl~-~~~Gh~~G~~~l~~v~~~c~~~ 67 (105)
+-||++||+- ...||--|+.=..=++..|..+
T Consensus 117 K~WAk~RGIYsn~~GylGGI~waILvArvcql~ 149 (254)
T PF04928_consen 117 KLWAKRRGIYSNVFGYLGGIHWAILVARVCQLY 149 (254)
T ss_dssp HHHHHHTT-B-CCCTSB-HHHHHHHHHHHHHHS
T ss_pred HHHHHHccccchhhccchHHHHHHHHHHHHHHC
Confidence 6799999954 5679999999888888889876
No 144
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=35.35 E-value=35 Score=24.26 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=26.2
Q ss_pred CeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 26 RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 26 ~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
.-.|||.-|||-|+..-++ .+ . ..+.+++|+.|.-|-+|
T Consensus 73 ~l~GVigSGNrNfg~~f~~--------aa---~---~ia~ky~VPll~kfEl~ 111 (122)
T PF07972_consen 73 LLRGVIGSGNRNFGDNFCL--------AA---D---KIAEKYGVPLLYKFELS 111 (122)
T ss_dssp GEEEEEEEE-GGGGGGTTH--------HH---H---HHHHHHT--EEEEEETT
T ss_pred hheeEEecCCcHHHHHHHH--------HH---H---HHHHHcCCCEEEEEecC
Confidence 3589999999999976654 11 1 23667899999888776
No 145
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=35.33 E-value=1.6e+02 Score=23.42 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEE--EeeccCCHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTV--FAFSYDNWVEVEFLMKLFEK 94 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~--yafSteN~~Ev~~Lm~l~~~ 94 (105)
++++.+.++.+.+.|+..+.+ -....+|.+|+..+.+++.+
T Consensus 139 ~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~ 181 (329)
T PRK13361 139 LERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRE 181 (329)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 678888899999999854433 23445889999988887764
No 146
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=35.33 E-value=28 Score=25.95 Aligned_cols=59 Identities=24% Similarity=0.195 Sum_probs=38.1
Q ss_pred CCCCCeEEEeecCchHHHHhcCC---CchHhHHHHHHHHHHHHHHHHhcCCCEEEEEe-eccC
Q 045812 22 EAMPRHVAVIMDGNVRWARQRGL---PSSAGHEAGVRSLRELVELCCRWGVKVLTVFA-FSYD 80 (105)
Q Consensus 22 ~~~P~HIaiImDGNRRwAk~~gl---~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~ya-fSte 80 (105)
+.+--..|+.++.-.+-+.-+.+ |...|+..|..-+..++.-|.+.||+.+-+.. +|++
T Consensus 49 g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt~~~~ 111 (153)
T COG1246 49 GKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTTRSPE 111 (153)
T ss_pred CcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeecccHH
Confidence 33444455554443333333332 23457788999999999999999999887777 4433
No 147
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=35.20 E-value=81 Score=21.96 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 56 SLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 56 ~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
.++++++-|.+.|++.|.+=++||-++
T Consensus 93 ~~~~~L~~a~~~~~~SIAfP~igtG~~ 119 (137)
T cd02903 93 IVSECLEKCEELSYTSISFPAIGTGNL 119 (137)
T ss_pred HHHHHHHHHHHCCCcEEEECCCcCcCC
Confidence 346678888899999999999999998
No 148
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=35.17 E-value=1.4e+02 Score=22.91 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=42.8
Q ss_pred CCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec--cCCH---HHHHHHHHHHHH
Q 045812 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS--YDNW---VEVEFLMKLFEK 94 (105)
Q Consensus 24 ~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS--teN~---~Ev~~Lm~l~~~ 94 (105)
.+-+|+...+|+ .|-..... .-|...-.+..+.|..+||+.+++.-|- -+++ +-++.|-+++++
T Consensus 39 ~~V~v~~lT~Ge------~g~~~~~~-~l~~~R~~E~~~a~~~LGv~~~~~l~~~~~~~~~~~~~~~~~L~~ii~~ 107 (237)
T COG2120 39 VEVTVVCLTLGE------AGENGGEL-ELGAVRRAEARAAARVLGVRETIFLGFPDTGADADPEEITGALVAIIRR 107 (237)
T ss_pred CeEEEEEccCCc------ccccCCcc-chHHHHHHHHHHHHHhcCCCcceecCCCccccccChHHHHHHHHHHHHH
Confidence 678999999999 22211111 5666788899999999999998887775 2344 333335554443
No 149
>PLN02417 dihydrodipicolinate synthase
Probab=35.10 E-value=74 Score=24.83 Aligned_cols=45 Identities=16% Similarity=0.063 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~ 98 (105)
.+.+.+.++|+.+.||.-+.+..-+-|-+ +|-..+++...+....
T Consensus 21 ~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~ 69 (280)
T PLN02417 21 LEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGG 69 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCC
Confidence 34678899999999999999999988887 8999888887766543
No 150
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=35.07 E-value=1.6e+02 Score=22.96 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=41.9
Q ss_pred CCCCeEEEeecCc----hHHHHhcCCC---------------chHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH-
Q 045812 23 AMPRHVAVIMDGN----VRWARQRGLP---------------SSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW- 82 (105)
Q Consensus 23 ~~P~HIaiImDGN----RRwAk~~gl~---------------~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~- 82 (105)
.+|=++||++=.+ ++|++.-|+. ....+..|.+...++++.+.+.||+-+-+|.| |+
T Consensus 200 ~~pIi~GI~p~~s~~~~~~~~~~~Gv~iP~~~~~~l~~~~~~~~~~~~~gi~~a~e~~~~l~~~gv~GvH~~t~---n~~ 276 (287)
T PF02219_consen 200 DVPIIPGIMPLTSAKSARFLAKLCGVDIPDELIERLEEAKDDPEAVREIGIEIAVELIRELLAEGVPGVHLYTM---NRE 276 (287)
T ss_dssp TSEEEEEEE-HCCHHHHHHHHHHHT-EEEHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEET---TTS
T ss_pred CCcEEEEEeccCCHHHHHHHHhccCccCCHHHHHHHHHhcCCHHHHHHHhHHHHHHHHHHHHHcCCCeEEEEcC---CCH
Confidence 5677888877665 3444444433 22356778888889999888899998888876 55
Q ss_pred HHHHHHHH
Q 045812 83 VEVEFLMK 90 (105)
Q Consensus 83 ~Ev~~Lm~ 90 (105)
+-+..|++
T Consensus 277 ~~~~~il~ 284 (287)
T PF02219_consen 277 ELVPEILE 284 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 151
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=34.98 E-value=80 Score=23.39 Aligned_cols=12 Identities=42% Similarity=0.703 Sum_probs=10.1
Q ss_pred CCCeEEEeecCc
Q 045812 24 MPRHVAVIMDGN 35 (105)
Q Consensus 24 ~P~HIaiImDGN 35 (105)
+|++|=++.||.
T Consensus 108 ~~kvvillTDG~ 119 (224)
T cd01475 108 VPRVGIVVTDGR 119 (224)
T ss_pred CCeEEEEEcCCC
Confidence 578888999996
No 152
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=34.65 E-value=61 Score=22.09 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEE
Q 045812 54 VRSLRELVELCCRWGVKVLTV 74 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~ 74 (105)
+..+.++++.|.+.|++.+++
T Consensus 98 ~~~vv~v~d~~~~aG~~~v~l 118 (122)
T TIGR02803 98 YGDLMKVMNLLRQAGYLKIGL 118 (122)
T ss_pred HHHHHHHHHHHHHcCCCEEEE
Confidence 446888999999999999887
No 153
>PRK11024 colicin uptake protein TolR; Provisional
Probab=34.57 E-value=58 Score=22.91 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEE
Q 045812 54 VRSLRELVELCCRWGVKVLTV 74 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~ 74 (105)
+..+.++++.|.+.|+..+++
T Consensus 116 ~~~vv~vmd~~k~aG~~~v~l 136 (141)
T PRK11024 116 YDEIIKALNLLHSAGVKSVGL 136 (141)
T ss_pred HHHHHHHHHHHHHcCCCeEEE
Confidence 346889999999999999987
No 154
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=34.45 E-value=1e+02 Score=25.21 Aligned_cols=46 Identities=11% Similarity=0.126 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeeccCCH-------------HHHHHHHHHHHHHHHH
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFSYDNW-------------VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafSteN~-------------~Ev~~Lm~l~~~~~~~ 98 (105)
+.+.+.+-++.+.++++++|++|.|+.+-. ++...+++++.+.+.+
T Consensus 186 t~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 244 (394)
T PRK08898 186 TLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAA 244 (394)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHH
Confidence 455666678888999999999999996542 3445555666666554
No 155
>PRK00431 RNase III inhibitor; Provisional
Probab=34.39 E-value=1.4e+02 Score=21.42 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeeccCCH----HH-HHHHHHHHHHHH
Q 045812 55 RSLRELVELCCRWGVKVLTVFAFSYDNW----VE-VEFLMKLFEKSI 96 (105)
Q Consensus 55 ~~l~~v~~~c~~~GI~~vT~yafSteN~----~E-v~~Lm~l~~~~~ 96 (105)
..+..+++.|.+.+++.|.+=++||-++ ++ .+.+++.+.+++
T Consensus 99 ~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~ 145 (177)
T PRK00431 99 SAYRNSLRLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFL 145 (177)
T ss_pred HHHHHHHHHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHHHHH
Confidence 4456677778899999999999999998 33 344445555543
No 156
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=34.16 E-value=61 Score=26.99 Aligned_cols=39 Identities=26% Similarity=0.527 Sum_probs=29.3
Q ss_pred cCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEE
Q 045812 33 DGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVF 75 (105)
Q Consensus 33 DGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~y 75 (105)
|..-+-.+..|++.-+|| +|...+++.+.++|.+.|||-
T Consensus 119 dtk~~~~rNFGm~~PeGy----RKAlRlm~~AekF~lPiitfI 157 (317)
T COG0825 119 DTKEKLKRNFGMPRPEGY----RKALRLMKLAEKFGLPIITFI 157 (317)
T ss_pred cchhHHHhcCCCCCchHH----HHHHHHHHHHHHhCCCEEEEe
Confidence 555666777788666655 566788888999999999874
No 157
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=34.14 E-value=61 Score=22.57 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=29.0
Q ss_pred chHhHHHHHHHHHHHHHHHHh-cCCCEEEEEeeccCCH
Q 045812 46 SSAGHEAGVRSLRELVELCCR-WGVKVLTVFAFSYDNW 82 (105)
Q Consensus 46 ~~~Gh~~G~~~l~~v~~~c~~-~GI~~vT~yafSteN~ 82 (105)
...|.-.|.+.+..+++++.+ .|++.|.+.++ .+|-
T Consensus 103 ~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~-~~N~ 139 (179)
T PRK10151 103 SHQGQGIISQALQALIHHYAQSGELRRFVIKCR-VDNP 139 (179)
T ss_pred hhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEc-CCCH
Confidence 344667788999999999875 68999999988 4675
No 158
>PRK04143 hypothetical protein; Provisional
Probab=33.98 E-value=1.4e+02 Score=23.76 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHH-HHHHHHHHHHH
Q 045812 55 RSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEF-LMKLFEKSIKS 98 (105)
Q Consensus 55 ~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~-Lm~l~~~~~~~ 98 (105)
...+.+++.|.+.|++.|.+=+.||-.| ++... ..+.+.+++++
T Consensus 187 ~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~ 235 (264)
T PRK04143 187 SCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKE 235 (264)
T ss_pred HHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3456677888899999999999999998 44433 33555555553
No 159
>PF13289 SIR2_2: SIR2-like domain
Probab=33.95 E-value=1e+02 Score=20.38 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=20.0
Q ss_pred CCCcchhHhHHhhhhccCCCCCCCCeEEEeecCc
Q 045812 2 SLNRNNVILARGGVAGGLNREAMPRHVAVIMDGN 35 (105)
Q Consensus 2 ~~~~~~~~~~~~~l~~~i~~~~~P~HIaiImDGN 35 (105)
|++..+++.+-..+.+.... ..|+|.+++++..
T Consensus 95 s~~D~~i~~~l~~~~~~~~~-~~~~~~~v~~~~~ 127 (143)
T PF13289_consen 95 SFNDPDIRQLLRSALENSGK-SRPRHYIVIPDPD 127 (143)
T ss_pred CCCCHHHHHHHHHHHHhccC-CCccEEEEEcCCc
Confidence 34444555444443333333 5789999999987
No 160
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=33.85 E-value=62 Score=22.13 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEE
Q 045812 54 VRSLRELVELCCRWGVKVLTV 74 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~ 74 (105)
+..+.++++.|.+.|+..+++
T Consensus 106 ~~~vv~vmd~~~~~G~~~v~l 126 (129)
T TIGR02801 106 YGEVIKVMALLKQAGIEKVGL 126 (129)
T ss_pred HHHHHHHHHHHHHcCCCeEEE
Confidence 456889999999999999876
No 161
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=33.72 E-value=1.5e+02 Score=24.73 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
..+.+.+.++++.++|++.+++|.++
T Consensus 217 t~e~~~~tl~~~~~l~p~~i~~y~l~ 242 (453)
T PRK13347 217 TVESFRETLDKVIALSPDRIAVFGYA 242 (453)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 45677788888888888888888775
No 162
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=33.58 E-value=1.4e+02 Score=22.94 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIK 97 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~ 97 (105)
.+.+.+.++|+.+.||.-+.+-..+-|-+ +|-..+++...+...
T Consensus 20 ~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~ 67 (284)
T cd00950 20 FDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVN 67 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhC
Confidence 34678899999999999999988887887 898888888777654
No 163
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=33.58 E-value=2.1e+02 Score=21.69 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=41.2
Q ss_pred CeEEEeecCch-HH-HHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHHHHH
Q 045812 26 RHVAVIMDGNV-RW-ARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEK 94 (105)
Q Consensus 26 ~HIaiImDGNR-Rw-Ak~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l~~~ 94 (105)
.+|.|-.||.. .+ -..+|. .-..+++.+.++.+.+.|+...+...-...|.+|++.+.+++..
T Consensus 120 ~~v~iSid~~~~e~hd~~rg~------~g~~~~~~~~i~~~~~~g~~~~~~~~v~~~n~~~l~~~~~~~~~ 184 (347)
T COG0535 120 DYVSISLDGLDPETHDPIRGV------KGVFKRAVEAIKNLKEAGILVVINTTVTKINYDELPEIADLAAE 184 (347)
T ss_pred cEEEEEecCCChhhhhhhcCC------CcHHHHHHHHHHHHHHcCCeeeEEEEEecCcHHHHHHHHHHHHH
Confidence 48889999874 33 233332 22355677777888888988555555556777788777776654
No 164
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=33.46 E-value=1.5e+02 Score=24.11 Aligned_cols=28 Identities=4% Similarity=0.160 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeeccC
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFSYD 80 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafSte 80 (105)
..+.+.+-++.+.++++.++++|.++.+
T Consensus 168 t~~~~~~~l~~~~~l~~~~is~y~l~~~ 195 (370)
T PRK06294 168 SLSDFIVDLHQAITLPITHISLYNLTID 195 (370)
T ss_pred CHHHHHHHHHHHHccCCCeEEEeeeEec
Confidence 4567888899999999999999999853
No 165
>PRK12677 xylose isomerase; Provisional
Probab=33.44 E-value=71 Score=26.49 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEE
Q 045812 51 EAGVRSLRELVELCCRWGVKVLTVF 75 (105)
Q Consensus 51 ~~G~~~l~~v~~~c~~~GI~~vT~y 75 (105)
+...+.+++.+++|.++|++.|+++
T Consensus 110 ~~Ai~~~~r~IdlA~eLGa~~Vvv~ 134 (384)
T PRK12677 110 RYALRKVLRNIDLAAELGAKTYVMW 134 (384)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 4458889999999999999999997
No 166
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=33.43 E-value=73 Score=21.77 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeecc
Q 045812 52 AGVRSLRELVELCCRWGVKVLTVFAFSY 79 (105)
Q Consensus 52 ~G~~~l~~v~~~c~~~GI~~vT~yafSt 79 (105)
...+.+.++++++.+.|++.++++.|+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p 191 (216)
T smart00729 164 ETEEDFEETLKLLKELGPDRVSIFPLSP 191 (216)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEeeeeee
Confidence 3567889999999999999999999873
No 167
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=33.21 E-value=1.1e+02 Score=21.78 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=28.4
Q ss_pred CCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH--HHHHHH
Q 045812 23 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW--VEVEFL 88 (105)
Q Consensus 23 ~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~--~Ev~~L 88 (105)
.+|+.+-+|.||.- - +.+.+...-+.+.||. +|+-...+. +|+..+
T Consensus 105 ~~~kv~vviTdG~s-------~----------d~~~~~a~~lr~~gv~---i~~vG~~~~~~~eL~~i 152 (165)
T cd01481 105 GVPQFLVLITGGKS-------Q----------DDVERPAVALKRAGIV---PFAIGARNADLAELQQI 152 (165)
T ss_pred CCCeEEEEEeCCCC-------c----------chHHHHHHHHHHCCcE---EEEEeCCcCCHHHHHHH
Confidence 47899999999971 1 1244556667778865 454454433 665543
No 168
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=33.20 E-value=1.7e+02 Score=22.01 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEEe
Q 045812 55 RSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 55 ~~l~~v~~~c~~~GI~~vT~ya 76 (105)
+.++++++.|.++|++.|+++.
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~ 106 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLV 106 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECC
Confidence 5588999999999999998764
No 169
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=33.08 E-value=1.7e+02 Score=21.82 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=36.4
Q ss_pred CCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH---HHHHHHHHHHHHHHH
Q 045812 22 EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW---VEVEFLMKLFEKSIK 97 (105)
Q Consensus 22 ~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~---~Ev~~Lm~l~~~~~~ 97 (105)
+--|+.|||+.=.| ..+..+.++|.+.||+. +..+...+ .+|..++.++.-.+.
T Consensus 74 ~~~~~diAVL~R~~-------------------~~~~~i~~~L~~~gIp~---~~~~~~~~~~~~~v~~l~~lL~~l~~ 130 (351)
T PF13361_consen 74 GIPPSDIAVLVRTN-------------------SQIKEIEDALKEAGIPY---RISGSKSLFESPEVKDLLSLLRLLLN 130 (351)
T ss_dssp TS-GGGEEEEESSG-------------------GHHHHHHHHHHHTTS-E---EESSSSBGGGSHHHHHHHHHHHHHHT
T ss_pred CCCcccEEEEEECc-------------------hhHHHHHHHHhhhccee---EeccccchhccchHHHHHHHHhhccC
Confidence 44478899988333 13457899999999992 44444455 889999888875443
No 170
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=32.87 E-value=57 Score=28.83 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH-----HHHHHHHHHHHHHHHH
Q 045812 51 EAGVRSLRELVELCCRWGVKVLTVFAFSYDNW-----VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 51 ~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~-----~Ev~~Lm~l~~~~~~~ 98 (105)
..|++|..++++.|..++|+-||+---. =| .|-..+.....+.+..
T Consensus 384 ~~~a~Kaarfi~lc~~~~iPlv~l~D~p--Gf~~G~~~E~~G~~~~~a~l~~A 434 (569)
T PLN02820 384 TESALKGAHFIELCAQRGIPLLFLQNIT--GFMVGSRSEASGIAKAGAKMVMA 434 (569)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEECC--CCCCCHHHHHhhHHHHHHHHHHH
Confidence 5899999999999999999999875322 23 5666666666655553
No 171
>PRK02551 flavoprotein NrdI; Provisional
Probab=32.61 E-value=2e+02 Score=21.11 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=38.7
Q ss_pred eEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHHHHHHHH
Q 045812 27 HVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSIK 97 (105)
Q Consensus 27 HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l~~~~~~ 97 (105)
..|||--|||-|...-++ -+ -..+.+++|+.|.-|-+|=-+ +.|+.+.+.+.+.+.
T Consensus 96 ~~gVigsGNrNfg~~F~~--------aa------~~ia~~~~vP~L~~fEl~GT~-~Dv~~v~~~~~~~~~ 151 (154)
T PRK02551 96 CLGIIGSGNRNFNNQYCL--------TA------KQYAKRFGFPMLADFELRGTP-SDIERIAAIIAELYA 151 (154)
T ss_pred eEEEEeecccHHHHHHHH--------HH------HHHHHHcCCCEEEEeeccCCH-HHHHHHHHHHHHHHH
Confidence 489999999999876554 11 124678999999988886433 455556666665554
No 172
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=32.29 E-value=73 Score=26.71 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=31.4
Q ss_pred hHHHHhcCCCch------H---hH-------------HHHHHHHHHHHHHHHhcCCCEEEEE
Q 045812 36 VRWARQRGLPSS------A---GH-------------EAGVRSLRELVELCCRWGVKVLTVF 75 (105)
Q Consensus 36 RRwAk~~gl~~~------~---Gh-------------~~G~~~l~~v~~~c~~~GI~~vT~y 75 (105)
++|++..|+... . .| +.-++.+++.++.|.++|.+.||+|
T Consensus 75 ~~~l~~~GL~v~~i~p~~f~~~~~~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 75 ARYAEELGLKIGAINPNLFQDDDYKFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred HHHHHHcCCceeeeeCCccCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 678888887654 1 11 1567789999999999999999998
No 173
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=32.24 E-value=1.7e+02 Score=22.16 Aligned_cols=45 Identities=7% Similarity=0.080 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHH-HHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVE-FLMKLFEKSIKS 98 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~-~Lm~l~~~~~~~ 98 (105)
....+..++.|.+.|++.|.+=+.||-++ ++.. ..++.+.+++.+
T Consensus 113 ~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~ 162 (186)
T cd02904 113 EKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVS 162 (186)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34566788888999999999999999998 4443 344556666654
No 174
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=31.96 E-value=64 Score=20.40 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 49 GHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
|...|.+-+..+++++.+.|++.+++.+.+
T Consensus 68 g~G~g~~ll~~~~~~~~~~~~~~i~~~~~~ 97 (131)
T TIGR01575 68 GQGIGRALLRELIDEAKGRGVNEIFLEVRV 97 (131)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCeEEEEEec
Confidence 445688889999999999999999988774
No 175
>PRK06267 hypothetical protein; Provisional
Probab=31.87 E-value=41 Score=27.31 Aligned_cols=23 Identities=13% Similarity=0.380 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCCCEEEEEeec
Q 045812 56 SLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 56 ~l~~v~~~c~~~GI~~vT~yafS 78 (105)
-+.+.++++.++++..++++.|.
T Consensus 183 d~~~~l~~l~~l~~d~v~~~~L~ 205 (350)
T PRK06267 183 DIEKLLNLIEELDLDRITFYSLN 205 (350)
T ss_pred HHHHHHHHHHHcCCCEEEEEeee
Confidence 34444444444444444444443
No 176
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=31.81 E-value=1.2e+02 Score=19.93 Aligned_cols=47 Identities=23% Similarity=0.250 Sum_probs=29.7
Q ss_pred CCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCHHHH
Q 045812 23 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEV 85 (105)
Q Consensus 23 ~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~~Ev 85 (105)
..+++|-+|.||.--+. + ...++++.+.+.||+..++-.-+ .+.+++
T Consensus 102 ~~~~~iiliTDG~~~~~-------------~--~~~~~~~~~~~~~v~v~~i~~g~-~~~~~l 148 (161)
T cd01450 102 NVPKVIIVLTDGRSDDG-------------G--DPKEAAAKLKDEGIKVFVVGVGP-ADEEEL 148 (161)
T ss_pred CCCeEEEEECCCCCCCC-------------c--chHHHHHHHHHCCCEEEEEeccc-cCHHHH
Confidence 45678999999972111 0 46777888888887766665443 344333
No 177
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=31.77 E-value=94 Score=23.85 Aligned_cols=20 Identities=10% Similarity=0.209 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEE
Q 045812 55 RSLRELVELCCRWGVKVLTVF 75 (105)
Q Consensus 55 ~~l~~v~~~c~~~GI~~vT~y 75 (105)
+.+.+.++++.+.|.+ +.++
T Consensus 112 ~~~~~~i~~ak~~G~~-v~~~ 131 (263)
T cd07943 112 DVSEQHIGAARKLGMD-VVGF 131 (263)
T ss_pred HHHHHHHHHHHHCCCe-EEEE
Confidence 4677788888888864 4433
No 178
>smart00475 53EXOc 5'-3' exonuclease.
Probab=31.62 E-value=1.6e+02 Score=23.14 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=36.1
Q ss_pred HHhhhhccCCCCCCCCeEEEeecCc-hHHHHhcCCCchHhHHHH----H-HHHHHHHHHHHhcCCCEEEEEeeccCCHHH
Q 045812 11 ARGGVAGGLNREAMPRHVAVIMDGN-VRWARQRGLPSSAGHEAG----V-RSLRELVELCCRWGVKVLTVFAFSYDNWVE 84 (105)
Q Consensus 11 ~~~~l~~~i~~~~~P~HIaiImDGN-RRwAk~~gl~~~~Gh~~G----~-~~l~~v~~~c~~~GI~~vT~yafSteN~~E 84 (105)
+-..+.+-++. .-|.||+++.||. .-| |+.=.+...+++.- . ..+..+-+.+..+||+.+..-.+ |
T Consensus 36 ~~~~l~~l~~~-~~p~~~~~~fD~~~~~~-R~~l~p~YKa~R~~~pe~L~~q~~~~~~~l~~~gi~~i~~~g~------E 107 (259)
T smart00475 36 FLRMLLKLIKE-EKPTYVAVVFDAKGKTF-RHELYPEYKANRPKTPDELLEQIPLIKELLDALGIPVLEVEGY------E 107 (259)
T ss_pred HHHHHHHHHHH-cCCCeEEEEEeCCCCcc-ccchhHHHHhCCCCCCHHHHHHHHHHHHHHHHCCCCEEeeCCc------C
Confidence 33333333332 3589999999984 333 11112222222211 0 11233334455689988764433 4
Q ss_pred HHHHHHHHHH
Q 045812 85 VEFLMKLFEK 94 (105)
Q Consensus 85 v~~Lm~l~~~ 94 (105)
=|.++..+..
T Consensus 108 ADD~iatla~ 117 (259)
T smart00475 108 ADDVIATLAK 117 (259)
T ss_pred HHHHHHHHHH
Confidence 4455444433
No 179
>PRK05481 lipoyl synthase; Provisional
Probab=31.55 E-value=41 Score=26.65 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeecc
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSY 79 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSt 79 (105)
-+-..+.++...++|+..+.+|.||.
T Consensus 210 ~ed~~~tl~~lrel~~d~v~if~Ys~ 235 (289)
T PRK05481 210 DEEVLEVMDDLRAAGVDILTIGQYLQ 235 (289)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 34444444445555555555555543
No 180
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=31.55 E-value=41 Score=27.60 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=38.0
Q ss_pred CCcchhHhHHhhhhccCC--CCCC------CCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEE
Q 045812 3 LNRNNVILARGGVAGGLN--REAM------PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTV 74 (105)
Q Consensus 3 ~~~~~~~~~~~~l~~~i~--~~~~------P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~ 74 (105)
++..+|.++++.....++ .+++ |..|+.=||||+=+=+. -+.. -++++..+.||+++.+
T Consensus 82 l~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~a-------L~~s------GlLd~l~~~Gikyi~v 148 (315)
T cd06424 82 LEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTL-------LYNS------GLLKKWIEAGYKWLVF 148 (315)
T ss_pred CCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHH-------HHHC------CcHHHHHHCCCEEEEE
Confidence 344555566554444332 2333 45677888888322211 1222 2789999999999877
Q ss_pred EeeccCCH
Q 045812 75 FAFSYDNW 82 (105)
Q Consensus 75 yafSteN~ 82 (105)
| +.+|-
T Consensus 149 ~--~vdN~ 154 (315)
T cd06424 149 F--QDTNA 154 (315)
T ss_pred E--ecchh
Confidence 6 56774
No 181
>PRK07094 biotin synthase; Provisional
Probab=31.54 E-value=28 Score=27.32 Aligned_cols=40 Identities=5% Similarity=-0.056 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEE--EeeccCCHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTV--FAFSYDNWVEVEFLMKLFE 93 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~--yafSteN~~Ev~~Lm~l~~ 93 (105)
.+...+.++++.+.|++..+- +.+..|+.+++...++++.
T Consensus 164 ~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~ 205 (323)
T PRK07094 164 FENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLK 205 (323)
T ss_pred HHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHH
Confidence 455666677777777654443 3334566655555555444
No 182
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=31.49 E-value=60 Score=26.14 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeecc
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFSY 79 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafSt 79 (105)
..+.+.+.++++.++|++++++|.++.
T Consensus 163 t~~~~~~~l~~~~~l~~~~is~y~L~~ 189 (350)
T PRK08446 163 NKKLLKEELKLAKELPINHLSAYSLTI 189 (350)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecccee
Confidence 466788899999999999999999985
No 183
>COG1717 RPL32 Ribosomal protein L32E [Translation, ribosomal structure and biogenesis]
Probab=31.47 E-value=59 Score=23.94 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCCEE
Q 045812 48 AGHEAGVRSLRELVELCCRWGVKVL 72 (105)
Q Consensus 48 ~Gh~~G~~~l~~v~~~c~~~GI~~v 72 (105)
-+|.-|+.+=.+|++-|.++||+.+
T Consensus 102 IAs~VG~rKR~eI~~rA~elGikVl 126 (133)
T COG1717 102 IASTVGARKRIEILERARELGIKVL 126 (133)
T ss_pred HHHhhhHHHHHHHHHHHHHhCcEEe
Confidence 3888999999999999999999865
No 184
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=31.45 E-value=1.6e+02 Score=24.48 Aligned_cols=26 Identities=12% Similarity=0.094 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
..+.+.+.++++.++|++.+++|.++
T Consensus 206 t~e~~~~~l~~~~~l~~~~is~y~L~ 231 (430)
T PRK08208 206 THASWMESLDQALVYRPEELFLYPLY 231 (430)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEcccc
Confidence 34567777888888888888888876
No 185
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=31.31 E-value=1.1e+02 Score=18.27 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeccCC
Q 045812 56 SLRELVELCCRWGVKVLTVFAFSYDN 81 (105)
Q Consensus 56 ~l~~v~~~c~~~GI~~vT~yafSteN 81 (105)
.+.++++...+.||.-.++|+|..++
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~ 39 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE 39 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 46788888899999999999887654
No 186
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=31.20 E-value=60 Score=29.99 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEe
Q 045812 49 GHEAGVRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
.+..|++|+..+++.|.++|++.||+.-
T Consensus 223 ~~peGyRKAlRlmkLAekfgLPIVtLVD 250 (762)
T PLN03229 223 PTPHGYRKALRMMYYADHHGFPIVTFID 250 (762)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 6778999999999999999999999863
No 187
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=31.16 E-value=77 Score=25.27 Aligned_cols=49 Identities=14% Similarity=0.286 Sum_probs=32.1
Q ss_pred CCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 25 PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 25 P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
|.-|.++||.-----...|++... + .+++.++++-+.+.|| .||+|...
T Consensus 85 P~~vtLVPE~r~e~TTegGldv~~-~---~~~l~~~i~~L~~~gI-rvSLFiDP 133 (239)
T PF03740_consen 85 PDQVTLVPEKREELTTEGGLDVAG-N---RDRLKPVIKRLKDAGI-RVSLFIDP 133 (239)
T ss_dssp -SEEEEE--SGGGBSTTSSB-TCG-G---HHHHHHHHHHHHHTT--EEEEEE-S
T ss_pred cCEEEECCCCCCCcCCCcCChhhc-C---HHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 889999999875545555665543 2 4788899999999999 58888875
No 188
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=30.88 E-value=91 Score=20.72 Aligned_cols=42 Identities=10% Similarity=0.150 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeeccCCH--HHHHHHHHHHHH
Q 045812 52 AGVRSLRELVELCCRWGVKVLTVFAFSYDNW--VEVEFLMKLFEK 94 (105)
Q Consensus 52 ~G~~~l~~v~~~c~~~GI~~vT~yafSteN~--~Ev~~Lm~l~~~ 94 (105)
..+.+-++.++|+.+.||+.- +--+..+-+ +|+..+++.+..
T Consensus 4 ~~C~t~rka~~~L~~~gi~~~-~~d~~k~p~s~~el~~~l~~~~~ 47 (110)
T PF03960_consen 4 PNCSTCRKALKWLEENGIEYE-FIDYKKEPLSREELRELLSKLGN 47 (110)
T ss_dssp TT-HHHHHHHHHHHHTT--EE-EEETTTS---HHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHcCCCeE-eehhhhCCCCHHHHHHHHHHhcc
Confidence 356678889999999999765 455556667 999999988773
No 189
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.68 E-value=2e+02 Score=22.43 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeccCCH-HHHHHHHHHHHHHHHHH
Q 045812 56 SLRELVELCCRWGVKVLTVFAFSYDNW-VEVEFLMKLFEKSIKSE 99 (105)
Q Consensus 56 ~l~~v~~~c~~~GI~~vT~yafSteN~-~Ev~~Lm~l~~~~~~~~ 99 (105)
+-.+....|.++|+++.-.-|-.-.|. ..|+.|++++-+.++.-
T Consensus 143 s~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 143 SEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred hHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999989999 88888888888777654
No 190
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=30.51 E-value=4.9 Score=24.74 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=21.0
Q ss_pred CchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEE
Q 045812 34 GNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVF 75 (105)
Q Consensus 34 GNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~y 75 (105)
.+++|....-+.....+. ..-..+.++|.++||..-|+|
T Consensus 3 ~r~~ys~e~K~~~v~~~~---~~g~sv~~va~~~gi~~~~l~ 41 (76)
T PF01527_consen 3 KRRRYSPEFKLQAVREYL---ESGESVSEVAREYGISPSTLY 41 (76)
T ss_dssp SS----HHHHHHHHHHHH---HHHCHHHHHHHHHTS-HHHHH
T ss_pred CCCCCCHHHHHHHHHHHH---HCCCceEeeeccccccccccc
Confidence 456666655555454441 222567788999999776665
No 191
>PRK01060 endonuclease IV; Provisional
Probab=30.50 E-value=1.1e+02 Score=23.06 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCCEEEEEe
Q 045812 48 AGHEAGVRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 48 ~Gh~~G~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
+.-.+..+.+++.++.|.++|++.|++..
T Consensus 82 ~~r~~s~~~~~~~i~~A~~lga~~vv~h~ 110 (281)
T PRK01060 82 EILEKSRDFLIQEIERCAALGAKLLVFHP 110 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 34556788899999999999999999864
No 192
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=30.48 E-value=1.6e+02 Score=23.81 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=36.4
Q ss_pred CCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH---------HHHHHHHHHHHHHHH
Q 045812 44 LPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW---------VEVEFLMKLFEKSIK 97 (105)
Q Consensus 44 l~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~---------~Ev~~Lm~l~~~~~~ 97 (105)
+....||..|=+.+.++.+...+.==+.-.++-++.+-| +++..+++-+.+.++
T Consensus 250 INd~~Gh~~GD~lL~~vA~~L~~~l~~~d~laRlggdeFavll~~~~~~~a~~~~~rl~~~l~ 312 (366)
T PRK10245 250 INDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMSRVHEGLN 312 (366)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHhCCCCCEEEEEcCcEEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 445669999999999988876665333456788887777 455555555544444
No 193
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=30.22 E-value=53 Score=23.97 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=21.2
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCC
Q 045812 48 AGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDN 81 (105)
Q Consensus 48 ~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN 81 (105)
-||..|.+-...+.+||..+.-+.-++.-+..-|
T Consensus 94 ~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 94 PGHPGGKEESEAVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp -STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS
T ss_pred CCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccC
Confidence 4777777777777777777766655555444444
No 194
>PRK05660 HemN family oxidoreductase; Provisional
Probab=30.19 E-value=1.6e+02 Score=23.94 Aligned_cols=28 Identities=4% Similarity=0.075 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeeccC
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFSYD 80 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafSte 80 (105)
..+.+.+.++.+.++|+.++++|.+..+
T Consensus 172 t~~~~~~~l~~~~~l~p~~is~y~l~~~ 199 (378)
T PRK05660 172 SLEEALDDLRQAIALNPPHLSWYQLTIE 199 (378)
T ss_pred CHHHHHHHHHHHHhcCCCeEEeeccEec
Confidence 4566777888888888888888888743
No 195
>cd04703 Asparaginase_2_like A subfamily of the L-Asparaginase type 2-like enzymes. The wider family, a member of the Ntn-hydrolase superfamily, includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=30.16 E-value=50 Score=26.35 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=25.7
Q ss_pred cchhHhHHhhhhccCCCCCCCCeEEEeecCchHHHHhcCCC
Q 045812 5 RNNVILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLP 45 (105)
Q Consensus 5 ~~~~~~~~~~l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~ 45 (105)
+|-++.-+..+.+ ..|+=++-||-.+||+.+|++
T Consensus 89 knPi~vAr~vme~-------t~h~lLvG~gA~~fA~~~G~~ 122 (246)
T cd04703 89 EHPVLVARAVMEE-------TPHVLLAGDGAVKFAALTGVE 122 (246)
T ss_pred CCHHHHHHHHHhc-------CCCeEEECHHHHHHHHHhCCC
Confidence 3445555555443 269999999999999999997
No 196
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=30.11 E-value=76 Score=22.36 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEE
Q 045812 54 VRSLRELVELCCRWGVKVLTV 74 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~ 74 (105)
+..+.++++.|.+.|+..|++
T Consensus 112 ~~~vv~vmd~l~~aG~~~v~l 132 (141)
T PRK11267 112 YETLMKVMDTLHQAGYLKIGL 132 (141)
T ss_pred HHHHHHHHHHHHHcCCCeEEE
Confidence 456889999999999999887
No 197
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=30.10 E-value=78 Score=25.00 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=24.3
Q ss_pred EEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeecc
Q 045812 28 VAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSY 79 (105)
Q Consensus 28 IaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSt 79 (105)
--||+|+| =|.+|++ .++...|.+.|....++|+-..
T Consensus 72 ~iVI~Dd~-------------nYiKg~R--YelyclAr~~~~~~c~i~~~~~ 108 (270)
T PF08433_consen 72 TIVILDDN-------------NYIKGMR--YELYCLARAYGTTFCVIYCDCP 108 (270)
T ss_dssp SEEEE-S----------------SHHHH--HHHHHHHHHTT-EEEEEEEE--
T ss_pred eEEEEeCC-------------chHHHHH--HHHHHHHHHcCCCEEEEEECCC
Confidence 35689998 4566655 5778889999999999999763
No 198
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=29.56 E-value=84 Score=23.84 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=22.4
Q ss_pred eEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEE
Q 045812 27 HVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLT 73 (105)
Q Consensus 27 HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT 73 (105)
-|||||-- +.-.+.+++.++.+.++||++-.
T Consensus 4 ~V~IIMGS----------------~SD~~~mk~Aa~~L~~fgi~ye~ 34 (162)
T COG0041 4 KVGIIMGS----------------KSDWDTMKKAAEILEEFGVPYEV 34 (162)
T ss_pred eEEEEecC----------------cchHHHHHHHHHHHHHcCCCeEE
Confidence 79999933 33445677788888889988753
No 199
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=29.21 E-value=1.4e+02 Score=22.38 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=28.7
Q ss_pred CCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 23 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 23 ~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
.-|..|.+++|--+-- .+| +.-+..++- +.....+.+.+|+||++-.
T Consensus 55 ~~~~~lvvl~DvSGSM---------~~~---s~~~l~~~~-~l~~~~~~~~~f~F~~~l~ 101 (222)
T PF05762_consen 55 RKPRRLVVLCDVSGSM---------AGY---SEFMLAFLY-ALQRQFRRVRVFVFSTRLT 101 (222)
T ss_pred CCCccEEEEEeCCCCh---------HHH---HHHHHHHHH-HHHHhCCCEEEEEEeeehh
Confidence 4466899999987222 122 223333333 3334566999999998754
No 200
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=29.17 E-value=96 Score=24.37 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcC-CCEEEEEeeccCCH----HHHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWG-VKVLTVFAFSYDNW----VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 54 ~~~l~~v~~~c~~~G-I~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~ 98 (105)
.+.+.+.++|+.+.| |.-+.+..-+-|.+ +|-..+.+...+....
T Consensus 20 ~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~ 69 (290)
T TIGR00683 20 EKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD 69 (290)
T ss_pred HHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCC
Confidence 456788999999999 99999998888877 9999998887776543
No 201
>COG1475 Spo0J Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription]
Probab=29.14 E-value=47 Score=24.38 Aligned_cols=11 Identities=36% Similarity=0.516 Sum_probs=9.6
Q ss_pred EeecCchHHHH
Q 045812 30 VIMDGNVRWAR 40 (105)
Q Consensus 30 iImDGNRRwAk 40 (105)
.|.||-|||.-
T Consensus 51 eiv~G~rR~~A 61 (240)
T COG1475 51 EIVDGHRRLRA 61 (240)
T ss_pred EeeechHHHHH
Confidence 49999999985
No 202
>TIGR00593 pola DNA polymerase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.04 E-value=94 Score=28.89 Aligned_cols=80 Identities=24% Similarity=0.263 Sum_probs=41.7
Q ss_pred hHhHHhhhhccCCCCCCCCeEEEeecCchH-HHHhcCCCchHhHHHH-HHHHHH----HHHHHHhcCCCEEEEEeeccCC
Q 045812 8 VILARGGVAGGLNREAMPRHVAVIMDGNVR-WARQRGLPSSAGHEAG-VRSLRE----LVELCCRWGVKVLTVFAFSYDN 81 (105)
Q Consensus 8 ~~~~~~~l~~~i~~~~~P~HIaiImDGNRR-wAk~~gl~~~~Gh~~G-~~~l~~----v~~~c~~~GI~~vT~yafSteN 81 (105)
+.-+-..+.+-++.. -|.||+++.|+.+. | |..-.+...+++.. -+.+.. +-+.+..+||+.+..-.+
T Consensus 33 v~Gf~~~l~~ll~~~-~p~~i~v~FD~~~~tf-R~~~~~~YKa~R~~~Pe~l~~Q~~~i~~~l~~~gi~~i~~~g~---- 106 (887)
T TIGR00593 33 VYGFTKMLLKLLKEE-KPTYVAVAFDSGTPTF-RHEAYAEYKANRAPTPEELIEQIPLIKELLDALGIPILEVEGY---- 106 (887)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEEEcCCCCcc-hHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHCCCcEEeeCCc----
Confidence 334445555555433 49999999998652 3 22222222333322 112222 334455689988876544
Q ss_pred HHHHHHHHHHHHHH
Q 045812 82 WVEVEFLMKLFEKS 95 (105)
Q Consensus 82 ~~Ev~~Lm~l~~~~ 95 (105)
|=|.++.-+...
T Consensus 107 --EADDiIatla~~ 118 (887)
T TIGR00593 107 --EADDVIATLAKQ 118 (887)
T ss_pred --cHHHHHHHHHHH
Confidence 555555544443
No 203
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=28.92 E-value=2.4e+02 Score=22.16 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=37.8
Q ss_pred CCeEEEeecCch--HHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEe--eccCCHHHHHHHHHHHH
Q 045812 25 PRHVAVIMDGNV--RWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFA--FSYDNWVEVEFLMKLFE 93 (105)
Q Consensus 25 P~HIaiImDGNR--RwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~ya--fSteN~~Ev~~Lm~l~~ 93 (105)
..+|.|=+||.. ++.+-.+. ...++++.+.++.+.+.|++.+.+.+ ..-.|.+|+..+.+++.
T Consensus 113 l~~v~ISld~~~~~~~~~i~~~------~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~ 179 (334)
T TIGR02666 113 LKRVNVSLDSLDPERFAKITRR------GGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAK 179 (334)
T ss_pred CCeEEEecccCCHHHhheeCCC------CCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHH
Confidence 356777777742 22322110 11467888888888999987444432 23357788887777664
No 204
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=28.71 E-value=2.9e+02 Score=22.65 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=37.4
Q ss_pred chHHHHhcC--CCchHhHHHHHHHHHHHHHHHHhc---------------------CCCEEEEEeeccCCH
Q 045812 35 NVRWARQRG--LPSSAGHEAGVRSLRELVELCCRW---------------------GVKVLTVFAFSYDNW 82 (105)
Q Consensus 35 NRRwAk~~g--l~~~~Gh~~G~~~l~~v~~~c~~~---------------------GI~~vT~yafSteN~ 82 (105)
|++||++.| .+...|-.-|..=-.-|++.|.+. .=+-+|-|-|.++.|
T Consensus 21 ~GsyA~~f~g~KD~~~~v~lG~r~E~lIl~l~D~~fFf~~lEe~dq~~lddv~~~DdG~DLs~Y~F~~D~f 91 (274)
T TIGR01658 21 NGSYAESFNGSKDHKRGVEIGRRWEEMILEICDTHFFYEEIEECNEPFLDDVRSYDDGKDLSRYEFKTDGF 91 (274)
T ss_pred cchHHHHcCCCcCcHHHHHHHHHHHHHHHHHHHhhhhhhhHHhcCccchhhhhhcccccCccccccccccC
Confidence 568999999 777888888876666677777765 334578999999988
No 205
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=28.65 E-value=87 Score=21.85 Aligned_cols=37 Identities=27% Similarity=0.221 Sum_probs=30.3
Q ss_pred CchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 45 PSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 45 ~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
+...|+--|..-+..++++|...|+..+.+.+. .+|-
T Consensus 76 p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~-~~N~ 112 (157)
T TIGR02406 76 PRARGKGLARRLLEALLERVACERVRHLETTIT-PDNQ 112 (157)
T ss_pred hHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEc-CCCH
Confidence 556688899999999999999999998777764 5554
No 206
>PTZ00330 acetyltransferase; Provisional
Probab=28.62 E-value=63 Score=21.33 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=26.2
Q ss_pred CchHhHHHHHHHHHHHHHHHHhcCCCEEEEEe
Q 045812 45 PSSAGHEAGVRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 45 ~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
|...|+--|..-+..++++|.+.|+..+++.+
T Consensus 92 ~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~ 123 (147)
T PTZ00330 92 PSYRGQGLGRALISDLCEIARSSGCYKVILDC 123 (147)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCCCEEEEec
Confidence 44457778899999999999999998887654
No 207
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=28.58 E-value=1.7e+02 Score=21.90 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=38.3
Q ss_pred ccCCCCCCCCeEEE-eecCc----hHHHHhcCCCchH-hHHH---HHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 17 GGLNREAMPRHVAV-IMDGN----VRWARQRGLPSSA-GHEA---GVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 17 ~~i~~~~~P~HIai-ImDGN----RRwAk~~gl~~~~-Gh~~---G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
..+..+.++-+|++ |+|-. ..||++.|++... .+.. ....=.++.++..++++..+-++.|+
T Consensus 19 ~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~ 89 (190)
T TIGR00639 19 DACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDLVVLAGFM 89 (190)
T ss_pred HHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEeCcc
Confidence 33445567788886 57742 3788888887642 2211 01112467788888888888887774
No 208
>COG4887 Uncharacterized metal-binding protein conserved in archaea [General function prediction only]
Probab=28.44 E-value=68 Score=24.60 Aligned_cols=42 Identities=26% Similarity=0.386 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHHHHHHHH
Q 045812 55 RSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSIK 97 (105)
Q Consensus 55 ~~l~~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l~~~~~~ 97 (105)
-++++++++|..++-+.|.+ ||-.+-=+|-..|.+++++.|+
T Consensus 52 TrlEEIae~ckrm~ykkiGi-AFCigle~EAr~l~~iLsr~fE 93 (191)
T COG4887 52 TRLEEIAELCKRMVYKKIGI-AFCIGLEEEARALCEILSRGFE 93 (191)
T ss_pred HhHHHHHHHHHHhhhhhcce-eeeeccHHHHHHHHHHHHhcce
Confidence 36899999999999998886 6666555888888888887653
No 209
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=28.36 E-value=2.3e+02 Score=21.03 Aligned_cols=26 Identities=8% Similarity=-0.037 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEee
Q 045812 52 AGVRSLRELVELCCRWGVKVLTVFAF 77 (105)
Q Consensus 52 ~G~~~l~~v~~~c~~~GI~~vT~yaf 77 (105)
...+.+++.++.|.++|++.|.+..-
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~g 106 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLAG 106 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcC
Confidence 34578889999999999999987643
No 210
>PF03288 Pox_D5: Poxvirus D5 protein-like; InterPro: IPR004968 This domain is found at the C terminus of phage P4 alpha protein and related proteins. Phage P4 DNA replication depends on the product of the alpha gene, which has origin recognition ability, DNA helicase activity, and DNA primase activity. The structure of the protein can be summarised as follows: The N terminus provides the primase activity, the central region is the helicase/nucleoside triphosphatase domain and the ori DNA recognition resides in the C-terminal 1/3 of the protein []. The domain is also found at the C terminus of a number of proteins from orthopox viruses including vaccinia virus D5. D5 encodes a 90kDa protein that is transiently expressed at early times after infection. It has an nucleoside triphosphatase activity which is independent of common nucleic acid cofactors and it can hydrolyse all the common ribo- and deoxyribonucleoside triphosphates to diphosphates in the presence of a divalent cation [].; PDB: 1KA8_E.
Probab=28.35 E-value=49 Score=20.87 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=16.5
Q ss_pred HHHHHHHhcCCCEEEEEeeccCCH-HHHHHHHH
Q 045812 59 ELVELCCRWGVKVLTVFAFSYDNW-VEVEFLMK 90 (105)
Q Consensus 59 ~v~~~c~~~GI~~vT~yafSteN~-~Ev~~Lm~ 90 (105)
.-..||.+.|++. .+|..+| .|+...+.
T Consensus 30 ~Y~~wc~~ng~~~----~ls~~~F~~~L~~~~~ 58 (86)
T PF03288_consen 30 AYKEWCEENGYKP----PLSKRKFGKELKQYFP 58 (86)
T ss_dssp HHHHHHHHTT-S--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCc----ccCHHHHHHHHHHHhh
Confidence 3578999999888 6667777 66666543
No 211
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=27.92 E-value=2e+02 Score=23.72 Aligned_cols=46 Identities=7% Similarity=0.116 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeeccCC------------H-----HHHHHHHHHHHHHHHH
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFSYDN------------W-----VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafSteN------------~-----~Ev~~Lm~l~~~~~~~ 98 (105)
..+.+.+-++.+.++++.+|++|.++.+= + ++...+++...+.+.+
T Consensus 180 t~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~ 242 (400)
T PRK07379 180 TLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQ 242 (400)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999998432 1 4445566666666654
No 212
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=27.84 E-value=72 Score=20.59 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=25.2
Q ss_pred chHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 46 SSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 46 ~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
...|..-|..-+..+++.|.+.|+..+.+|.++
T Consensus 83 ~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~~~ 115 (127)
T PF13527_consen 83 EYRGRGLGRQLMRALLERARERGVPFIFLFPSS 115 (127)
T ss_dssp GGTTSSHHHHHHHHHHHHHHHTT-SEEEEE-SS
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 344666688889999999999999999888853
No 213
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=27.61 E-value=88 Score=25.22 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeecc
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFSY 79 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafSt 79 (105)
..+.+.+.++++.++|+.++++|.++.
T Consensus 173 t~~~~~~tl~~~~~l~~~~i~~y~l~~ 199 (375)
T PRK05628 173 SDDDWRASLDAALEAGVDHVSAYALIV 199 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeeeeec
Confidence 456788899999999999999999984
No 214
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.59 E-value=2.2e+02 Score=21.09 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=32.6
Q ss_pred CCeEEEeecCchHHHHhc-CCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 25 PRHVAVIMDGNVRWARQR-GLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 25 P~HIaiImDGNRRwAk~~-gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
...|.+....|--+.+.+ +. ......+.+.++++++.+.|.+. .|+.+..
T Consensus 81 ~~~i~i~~~~s~~~~~~~~~~----~~~~~~~~~~~~v~~ak~~g~~v----~~~~~~~ 131 (237)
T PF00682_consen 81 IDIIRIFISVSDLHIRKNLNK----SREEALERIEEAVKYAKELGYEV----AFGCEDA 131 (237)
T ss_dssp SSEEEEEEETSHHHHHHHTCS----HHHHHHHHHHHHHHHHHHTTSEE----EEEETTT
T ss_pred CCEEEecCcccHHHHHHhhcC----CHHHHHHHHHHHHHHHHhcCCce----EeCcccc
Confidence 345666666665333322 22 45567889999999999999887 5555554
No 215
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=27.43 E-value=1.4e+02 Score=26.70 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=30.8
Q ss_pred e-EEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 27 H-VAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 27 H-IaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
| +|++.||+ ..... +.+..++++|.+.||+.|-+.+|.
T Consensus 130 Hl~GL~SdGG--------VHSh~------~Hl~al~~~a~~~gv~~v~vH~f~ 168 (558)
T PLN02538 130 HLIGLLSDGG--------VHSRL------DQLQLLLKGAAERGAKRIRVHVLT 168 (558)
T ss_pred EEEEeccCCC--------cccHH------HHHHHHHHHHHHcCCCeEEEEEEc
Confidence 5 89999997 43333 456668999999999999999996
No 216
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=27.42 E-value=2.2e+02 Score=22.43 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=30.8
Q ss_pred CCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 44 LPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 44 l~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
+....||..|=+.+.++.+-..+..=+.-.+|-++.+.|
T Consensus 292 in~~~G~~~gd~~l~~~a~~L~~~~~~~~~~~R~~~deF 330 (407)
T PRK09966 292 INDTWGHATGDRVLIEIAKRLAEFGGLRHKAYRLGGDEF 330 (407)
T ss_pred HHhhhchHHHHHHHHHHHHHHHHhCCCCCEEEEEccceE
Confidence 445679999999999988877776555577888888888
No 217
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=27.37 E-value=56 Score=23.66 Aligned_cols=26 Identities=38% Similarity=0.613 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 50 HEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 50 h~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
-+.|+..+.++++-|.+.| |-+||.+
T Consensus 86 k~~~v~sl~eLl~~a~e~G---Vk~~AC~ 111 (148)
T PF13686_consen 86 KKKGVPSLEELLEMAKELG---VKFYACS 111 (148)
T ss_dssp HHCT---HHHHHHHHHHCC---EEEEEEH
T ss_pred HHcCCCCHHHHHHHHHHCC---CEEEEeh
Confidence 3456778999999999999 6678876
No 218
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=27.24 E-value=80 Score=21.08 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=28.3
Q ss_pred chHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCC
Q 045812 46 SSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDN 81 (105)
Q Consensus 46 ~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN 81 (105)
...|.-.|...+..++++|.+.|+..+.+.++ ..|
T Consensus 74 ~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~-~~N 108 (146)
T PRK09491 74 DYQRQGLGRALLEHLIDELEKRGVATLWLEVR-ASN 108 (146)
T ss_pred HHccCCHHHHHHHHHHHHHHHCCCcEEEEEEc-cCC
Confidence 34577779999999999999999999888876 445
No 219
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=27.16 E-value=1.1e+02 Score=22.41 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=11.1
Q ss_pred CCCCeEEEeecCc
Q 045812 23 AMPRHVAVIMDGN 35 (105)
Q Consensus 23 ~~P~HIaiImDGN 35 (105)
..||-+=+|.||.
T Consensus 107 ~~~kv~IllTDG~ 119 (192)
T cd01473 107 DAPKVTMLFTDGN 119 (192)
T ss_pred cCCeEEEEEecCC
Confidence 3688899999997
No 220
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=27.07 E-value=56 Score=26.30 Aligned_cols=61 Identities=23% Similarity=0.401 Sum_probs=35.4
Q ss_pred hHHHHhcCCCchH-hHHHH------HHH-HHHHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHHHHHHH
Q 045812 36 VRWARQRGLPSSA-GHEAG------VRS-LRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSI 96 (105)
Q Consensus 36 RRwAk~~gl~~~~-Gh~~G------~~~-l~~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l~~~~~ 96 (105)
-+|||++|....- .|..+ +++ +.+++.++.++||+-|-+==|..+.-+=|+...++++...
T Consensus 79 v~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA 147 (273)
T PF10566_consen 79 VDYAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAA 147 (273)
T ss_dssp HHHHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHH
Confidence 4678888744322 33333 322 5788888888888888776666665544554444444443
No 221
>cd02252 nylC_like nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC. EIII is an amide hydrolase that catalyzes the degradation of highly-polymerized 6-aminohexanoate oligomers. Together with other nylon degradation enzymes, such as 6-aminohexanoate cyclic dimer hydrolase (EI) and 6-aminohexanoate dimer hydrolase (EII), EIII plays a role in the detoxification and biological removal of the synthetic by-products of nylon manufacture. EIII shows sequence similarity to L-aminopeptidase D-amidase/D-esterase (DmpA), an aminopeptidase that releases N-terminal D and L amino acids from peptide substrates. Like DmpA, EIII undergoes autocatalytic cleavage in front of a nucleophile to form a heterodimer. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucl
Probab=26.92 E-value=96 Score=25.01 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=22.9
Q ss_pred EEEeeccCCH-----HHHHHHHHHHHHHHHHHH
Q 045812 73 TVFAFSYDNW-----VEVEFLMKLFEKSIKSEL 100 (105)
Q Consensus 73 T~yafSteN~-----~Ev~~Lm~l~~~~~~~~~ 100 (105)
|+|+|||-|- .+++.|+.+..+.+++-+
T Consensus 224 ~vfa~ST~~~~~~~~~~~~~l~~aAaeaveeAI 256 (260)
T cd02252 224 TVFALATGEVELPRSVDLTALGALAADVVARAI 256 (260)
T ss_pred EEEEEEcCCcCCCchhhHHHHHHHHHHHHHHHH
Confidence 7999999876 378888888888887654
No 222
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=26.84 E-value=1.3e+02 Score=22.71 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=36.7
Q ss_pred HHhhhhccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 11 ARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 11 ~~~~l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
|+....+++...--|.+|.|+..+. |- .+.+.++++++.+.|++.|++=.+.
T Consensus 95 ~~~~f~~ql~~~~~~gDvli~iS~S-------G~---------s~~v~~a~~~Ak~~G~~vI~IT~~~ 146 (196)
T PRK10886 95 HDEVYAKQVRALGHAGDVLLAISTR-------GN---------SRDIVKAVEAAVTRDMTIVALTGYD 146 (196)
T ss_pred HHHHHHHHHHHcCCCCCEEEEEeCC-------CC---------CHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3344444444445677888887776 32 4568899999999999999887663
No 223
>TIGR01699 XAPA xanthosine phosphorylase. (TIGR01698, TIGR01700).
Probab=26.81 E-value=2.7e+02 Score=21.88 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeecc-------CCH--HHHHHHHHHHHHHHHHHHHhhhC
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFSY-------DNW--VEVEFLMKLFEKSIKSELEGFIR 105 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafSt-------eN~--~Ev~~Lm~l~~~~~~~~~~~~~~ 105 (105)
|...+-+ +-.|.++|++.+.+-+-|. +-. +||-..++.....+.+++.+++|
T Consensus 188 gMs~vpE-a~~A~~~g~~~~~i~~Vtn~a~g~~~~~lt~~ev~~~~~~~~~~~~~ll~~~~~ 248 (248)
T TIGR01699 188 GMSVVPE-VISARHCDLKVVAVSAITNMAEGLSDVKLSHAQTLAAAELSKQNFINLICGFLR 248 (248)
T ss_pred ccchhHH-HHHHHHCCCcEEEEEEEeecCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444444 4459999999988887651 111 89999999999999998887765
No 224
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=26.57 E-value=55 Score=22.90 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=9.6
Q ss_pred CCCeEEEeecCc
Q 045812 24 MPRHVAVIMDGN 35 (105)
Q Consensus 24 ~P~HIaiImDGN 35 (105)
.|.||||.++++
T Consensus 92 ~~~HvGIy~G~g 103 (134)
T TIGR02219 92 AAKHAAIAASPT 103 (134)
T ss_pred CCcEEEEEeCCC
Confidence 478999999655
No 225
>PF13358 DDE_3: DDE superfamily endonuclease
Probab=26.53 E-value=40 Score=21.96 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=44.4
Q ss_pred HhHHhhhhccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHh--cCCCEEEEEeeccCCHHHHH
Q 045812 9 ILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCR--WGVKVLTVFAFSYDNWVEVE 86 (105)
Q Consensus 9 ~~~~~~l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~--~GI~~vT~yafSteN~~Ev~ 86 (105)
..|...+...+.+..-+..+-+|||+-+ .|+. ..+.+|+.+ .||+-+.+=..|.+ +.-++
T Consensus 63 ~~~~~~l~~~~~~~~~~~~~~li~DNa~------------~H~~-----~~~~~~l~~~~~~~~~~~~P~~sPd-LNpiE 124 (146)
T PF13358_consen 63 EDFIEFLEQLLRPYPRKGRIVLIMDNAS------------IHKS-----KKVQEWLEEHERGIELLFLPPYSPD-LNPIE 124 (146)
T ss_pred ccccccccccccccccceEEEEeccccc------------cccc-----ccccceeeccccccccccccCcCCc-cCHHH
Confidence 3444444444443322228999999872 2222 557777777 78887777666655 45566
Q ss_pred HHHHHHHHHHHH
Q 045812 87 FLMKLFEKSIKS 98 (105)
Q Consensus 87 ~Lm~l~~~~~~~ 98 (105)
.+...++..+.+
T Consensus 125 ~~w~~lk~~~~~ 136 (146)
T PF13358_consen 125 NVWGYLKRRIRR 136 (146)
T ss_pred HHHHHHHHHHHh
Confidence 777777777665
No 226
>PLN02937 Putative isoaspartyl peptidase/L-asparaginase
Probab=26.45 E-value=71 Score=27.26 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=29.6
Q ss_pred cchhHhHHhhhhccCCCC---CCCCeEEEeecCchHHHHhcCC
Q 045812 5 RNNVILARGGVAGGLNRE---AMPRHVAVIMDGNVRWARQRGL 44 (105)
Q Consensus 5 ~~~~~~~~~~l~~~i~~~---~~P~HIaiImDGNRRwAk~~gl 44 (105)
+|-++..+..+..+.... ....|+-++=||-.+||+.+|+
T Consensus 108 kNPI~vAr~Vme~~~~~~~~l~~t~HvlLvGeGA~~fA~~~G~ 150 (414)
T PLN02937 108 RNAIQIAALLAKEQMMGSSLLGRIPPMFLVGEGARQWAKSKGI 150 (414)
T ss_pred CCHHHHHHHHHHhhcccccccCCCCCeEEECHHHHHHHHHcCC
Confidence 566777777666554322 1245999999999999999999
No 227
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.34 E-value=3.2e+02 Score=22.77 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
.+.+.+.++++.++|+..+.+|.||
T Consensus 303 ~ed~~~tl~~i~~l~~~~i~~f~ys 327 (440)
T PRK14334 303 EEDFQETLSLYDEVGYDSAYMFIYS 327 (440)
T ss_pred HHHHHHHHHHHHhcCCCEeeeeEee
Confidence 4455666777778888888888877
No 228
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=26.31 E-value=2.1e+02 Score=22.34 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIK 97 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~ 97 (105)
.+.+.+.++|+.+.||.-+.+..-+-|=+ +|-..+.+...+...
T Consensus 20 ~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~ 67 (289)
T cd00951 20 EDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA 67 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC
Confidence 45688899999999999999988877766 888888877766654
No 229
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=26.22 E-value=84 Score=20.40 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=17.7
Q ss_pred CcchhHhHHhhhhccCCCCCCCCeEEEeecCch
Q 045812 4 NRNNVILARGGVAGGLNREAMPRHVAVIMDGNV 36 (105)
Q Consensus 4 ~~~~~~~~~~~l~~~i~~~~~P~HIaiImDGNR 36 (105)
+|.+++-++..+ +.++.+ .+|||.+||-|
T Consensus 42 ~rgg~~Alr~~~-~~lk~G---~~~~itpDGPr 70 (74)
T PF04028_consen 42 SRGGARALREML-RALKEG---YSIAITPDGPR 70 (74)
T ss_pred CCcHHHHHHHHH-HHHHCC---CeEEEeCCCCC
Confidence 455555555443 333433 58999999974
No 230
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=26.20 E-value=76 Score=21.38 Aligned_cols=40 Identities=10% Similarity=-0.011 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeeccCCH--HHHHHHHHHH
Q 045812 52 AGVRSLRELVELCCRWGVKVLTVFAFSYDNW--VEVEFLMKLF 92 (105)
Q Consensus 52 ~G~~~l~~v~~~c~~~GI~~vT~yafSteN~--~Ev~~Lm~l~ 92 (105)
.++..-+.+..|..+.||+.. +.-+..+.+ +|+..+++.+
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~-~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFE-ERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceE-EEecCCCcchHHHHHHHHHHh
Confidence 345566788889999999755 444556666 8888888876
No 231
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=26.16 E-value=1.5e+02 Score=23.71 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=36.1
Q ss_pred CCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 24 ~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
-|.-|.++||..----...|++.. .-.+.+.+++.-+.+.|| .||+|...
T Consensus 86 kP~~vtLVPE~r~E~TTegGldv~----~~~~~l~~~i~~L~~~gI-rVSLFidP 135 (239)
T PRK05265 86 KPHQVTLVPEKREELTTEGGLDVA----GQFDKLKPAIARLKDAGI-RVSLFIDP 135 (239)
T ss_pred CCCEEEECCCCCCCccCCccchhh----cCHHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 388999999987443334444332 245678899999999999 68998865
No 232
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=26.09 E-value=86 Score=23.02 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCEE
Q 045812 51 EAGVRSLRELVELCCRWGVKVL 72 (105)
Q Consensus 51 ~~G~~~l~~v~~~c~~~GI~~v 72 (105)
....+++.+++++|.+.||..+
T Consensus 58 ~~~~~~ld~~v~~a~~~gi~vi 79 (281)
T PF00150_consen 58 ETYLARLDRIVDAAQAYGIYVI 79 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHHHHhCCCeEE
Confidence 5788999999999999998864
No 233
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=25.91 E-value=3e+02 Score=21.17 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEE-eecc-CCHHHHHHHHHHHHH
Q 045812 53 GVRSLRELVELCCRWGVKVLTVF-AFSY-DNWVEVEFLMKLFEK 94 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~y-afSt-eN~~Ev~~Lm~l~~~ 94 (105)
..+++.+.++.+.+.|+..+.+. +... +|.+|+..+.+++.+
T Consensus 132 ~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~ 175 (302)
T TIGR02668 132 ALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAE 175 (302)
T ss_pred cHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 46788888888999998744432 3334 788888777776643
No 234
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=25.89 E-value=1.2e+02 Score=23.81 Aligned_cols=44 Identities=23% Similarity=0.136 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIK 97 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~ 97 (105)
.+.+.+.++|+.+.||.-+.+-..+-|-+ +|-..+++...+...
T Consensus 20 ~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~ 67 (294)
T TIGR02313 20 EEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA 67 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC
Confidence 35678899999999999999999888887 999999887776554
No 235
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=25.77 E-value=2.1e+02 Score=22.44 Aligned_cols=42 Identities=14% Similarity=0.049 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEe-e-ccCCHHHHHHHHHHHHH
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFA-F-SYDNWVEVEFLMKLFEK 94 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~ya-f-SteN~~Ev~~Lm~l~~~ 94 (105)
.++++.+.++.+.+.|+..+.+.. . .-.|.+|+..+.+++.+
T Consensus 142 ~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~ 185 (331)
T PRK00164 142 RLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKD 185 (331)
T ss_pred CHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHh
Confidence 467888999999999985555432 2 24566888888877653
No 236
>COG4294 Uve UV damage repair endonuclease [DNA replication, recombination, and repair]
Probab=25.72 E-value=1.5e+02 Score=24.99 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 48 AGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 48 ~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
+-++.....+...++||...|| .+|-||..=|
T Consensus 66 ~l~~~Nl~~l~r~l~~~~~~~I---~lyRlSSsLf 97 (347)
T COG4294 66 QLYKQNLLNLIRLLEYNHAHGI---RLYRLSSSLF 97 (347)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc---eEEEeccccc
Confidence 4567777888899999999996 5899997766
No 237
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.60 E-value=1e+02 Score=25.95 Aligned_cols=28 Identities=7% Similarity=0.156 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCC
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDN 81 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN 81 (105)
-+.+.+.++++.++++..+.+|.||.+-
T Consensus 317 ~edf~~tl~~v~~l~~~~~~~f~ys~~~ 344 (449)
T PRK14332 317 EEEFEDTLAVVREVQFDMAFMFKYSERE 344 (449)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 3557778999999999999999999543
No 238
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=25.58 E-value=2.8e+02 Score=24.90 Aligned_cols=27 Identities=15% Similarity=0.221 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhcCCC--EEEEEeec
Q 045812 52 AGVRSLRELVELCCRWGVK--VLTVFAFS 78 (105)
Q Consensus 52 ~G~~~l~~v~~~c~~~GI~--~vT~yafS 78 (105)
+|.-.-.|....|.-+||+ .+.+.-|.
T Consensus 466 k~~iR~~Ea~~A~~~lGv~~~~v~fL~lP 494 (652)
T PRK02122 466 KGLIRRGEARAACRYVGLPDEHVHFLDLP 494 (652)
T ss_pred HHHHHHHHHHHHHHhcCCCccceEECCCC
Confidence 4667778888999999999 66666554
No 239
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=25.34 E-value=66 Score=21.74 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeeccCCH--HHHHHHHHHHHHHHHH
Q 045812 52 AGVRSLRELVELCCRWGVKVLTVFAFSYDNW--VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 52 ~G~~~l~~v~~~c~~~GI~~vT~yafSteN~--~Ev~~Lm~l~~~~~~~ 98 (105)
.++.+.++...|..+.||+...+ -+..+-+ +|+..+++.+..-+.+
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~-di~~~~~t~~el~~~l~~~~~~~~~ 54 (112)
T cd03034 7 PRCSKSRNALALLEEAGIEPEIV-EYLKTPPTAAELRELLAKLGISPRD 54 (112)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEE-ecccCCcCHHHHHHHHHHcCCCHHH
Confidence 45667788899999999987643 3445556 8888888877633333
No 240
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=25.31 E-value=1.9e+02 Score=18.40 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=40.2
Q ss_pred hhHhHHhhhhccCCCC---CCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 7 NVILARGGVAGGLNRE---AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 7 ~~~~~~~~l~~~i~~~---~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
|.+.+...+...+... ..| ...+++|=.+ + ..+....|+..|-.-+.++.+...+.-=+...+|-++.+-|
T Consensus 13 n~~~~~~~~~~~~~~~~~~~~~-~~l~~i~i~~-~---~~~~~~~g~~~~~~~l~~i~~~l~~~~~~~~~~~r~~~~~f 86 (163)
T smart00267 13 NRRYFEEELEQELQRAQRQGSP-FALLLIDLDN-F---KDINDTYGHAVGDELLQEVAQRLSSCLRPGDLLARLGGDEF 86 (163)
T ss_pred hHHHHHHHHHHHHHHhhccCCe-EEEEEEEccc-c---chhhhccCchhHHHHHHHHHHHHHHhcCCCCEEEEecCceE
Confidence 4445555554433322 222 4555565541 1 11333458889988888888877766444456676666655
No 241
>cd02888 RNR_II_dimer Class II ribonucleotide reductase, dimeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Many, bu
Probab=25.27 E-value=92 Score=26.57 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEe
Q 045812 54 VRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
.+.+.++...+.++|+|.+|+|-
T Consensus 440 ~~d~~~~y~~aw~~G~K~~t~yR 462 (464)
T cd02888 440 VEDVEAVYLLAWKLGLKGITVYR 462 (464)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeC
Confidence 56788888899999999999994
No 242
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=25.18 E-value=1e+02 Score=25.10 Aligned_cols=29 Identities=7% Similarity=0.342 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeeccCC
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFSYDN 81 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafSteN 81 (105)
..+.+.+.++++.++++.++++|.++.+-
T Consensus 168 t~e~~~~tl~~~~~l~p~~is~y~L~~~~ 196 (353)
T PRK05904 168 KLKDLDEVFNFILKHKINHISFYSLEIKE 196 (353)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEeeEecC
Confidence 45678888999999999999999999553
No 243
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=25.15 E-value=56 Score=19.61 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEE
Q 045812 52 AGVRSLRELVELCCRWGVKVLTV 74 (105)
Q Consensus 52 ~G~~~l~~v~~~c~~~GI~~vT~ 74 (105)
.|..++.++++.|.+.|++.+.+
T Consensus 12 ~~~~~~~~~~~~a~~~g~~~v~i 34 (67)
T smart00481 12 DGALSPEELVKRAKELGLKAIAI 34 (67)
T ss_pred cccCCHHHHHHHHHHcCCCEEEE
Confidence 34557889999999999887754
No 244
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=25.14 E-value=1.3e+02 Score=24.83 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 49 GHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
--..|...+..+++|..+.|++.+.+.|=|
T Consensus 80 tms~g~~sL~~V~dwl~~~g~~~~GLIAaS 109 (294)
T PF02273_consen 80 TMSIGKASLLTVIDWLATRGIRRIGLIAAS 109 (294)
T ss_dssp -HHHHHHHHHHHHHHHHHTT---EEEEEET
T ss_pred chHHhHHHHHHHHHHHHhcCCCcchhhhhh
Confidence 446789999999999999999999999988
No 245
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=25.09 E-value=1.8e+02 Score=21.50 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=46.0
Q ss_pred eEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 27 HVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 27 HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
.|..++=|--=++...|.+...+|..=.....+++..|...|+..+....+..++.
T Consensus 143 ~v~~l~~G~~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~~~~~~~~d~ 198 (221)
T PF03328_consen 143 GVDGLFFGPADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAIDGVFPDFEDA 198 (221)
T ss_dssp TEEEEEE-HHHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEEEEESSSSHH
T ss_pred CeeEEEeCcHHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEEEeeCCHHHH
Confidence 56667778889999999988778877788999999999999998887776666654
No 246
>PRK11713 16S ribosomal RNA methyltransferase RsmE; Provisional
Probab=25.09 E-value=79 Score=24.06 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecc
Q 045812 55 RSLRELVELCCRWGVKVLTVFAFSY 79 (105)
Q Consensus 55 ~~l~~v~~~c~~~GI~~vT~yafSt 79 (105)
+++..+++-|.++||..+..+.+..
T Consensus 86 ~~~e~il~k~tELGV~~i~p~~ser 110 (234)
T PRK11713 86 DRLELILQKATELGVSAIIPLISER 110 (234)
T ss_pred ccHHHHHHHHHHhCcCeEEEEEecc
Confidence 4788999999999999999988753
No 247
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=25.08 E-value=56 Score=25.01 Aligned_cols=38 Identities=16% Similarity=-0.032 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeec-cCCHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFS-YDNWVEVEFLMKL 91 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafS-teN~~Ev~~Lm~l 91 (105)
.+...+.++.+.+.||+..+-+.+- .|+.+++...++.
T Consensus 157 ~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~ 195 (296)
T TIGR00433 157 YDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRIGLALA 195 (296)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHH
Confidence 3455667777777777755444442 4444444444443
No 248
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=25.05 E-value=1.1e+02 Score=25.39 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEe
Q 045812 49 GHEAGVRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
--+..++.+++.++.|.++|.+.|+++.
T Consensus 109 vR~~ai~~~kraId~A~eLGa~~v~v~~ 136 (382)
T TIGR02631 109 VRRYALRKVLRNMDLGAELGAETYVVWG 136 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEcc
Confidence 3357788999999999999999999975
No 249
>PF09010 AsiA: Anti-Sigma Factor A; InterPro: IPR015100 Anti-sigma factor A is a transcriptional inhibitor that inhibits sigma 70-directed transcription by weakening its interaction with the core of the host's RNA polymerase. It is an all-helical protein, composed of six helical segments and intervening loops and turns, as well as a helix-turn-helix DNA binding motif, although neither free anti-sigma factor nor anti-sigma factor bound to sigma-70 has been shown to interact directly with DNA. In solution, the protein forms a symmetric dimer of small (10.59 kDa) protomers, which are composed of helix and coil regions and are devoid of beta-strand/sheet secondary structural elements []. ; PDB: 1TKV_A 1JR5_B 1TLH_A 1TL6_A.
Probab=24.97 E-value=55 Score=22.65 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH---------HHHHHHHHHHHHHHHHHHH
Q 045812 49 GHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW---------VEVEFLMKLFEKSIKSELE 101 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~---------~Ev~~Lm~l~~~~~~~~~~ 101 (105)
||..=.++-.-++.+|.++|++..+==-|..-|| +|...|.+-|..-..+...
T Consensus 22 g~ddIl~~q~~FIaFLNElG~r~~~G~~~t~~sfr~m~~~lt~~ek~elieeFn~G~e~i~r 83 (91)
T PF09010_consen 22 GRDDILENQELFIAFLNELGFRTPTGKEFTQMSFRQMFKRLTQEEKEELIEEFNEGHEPIYR 83 (91)
T ss_dssp TTHHHHTSHHHHHHHHHHHT-ES-SSSE--HHHHHHHHHTS-HHHHHHHHHHSHHHHHHHHH
T ss_pred ChHHHHHhHHHHHHHHHHhcccccCCcchhHHHHHHHHHHcCHHHHHHHHHHHhhhhHHHHH
Confidence 5555555667799999999999977666665565 7888887777765554443
No 250
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=24.87 E-value=99 Score=17.65 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 045812 83 VEVEFLMKLFEKSIKSELEGF 103 (105)
Q Consensus 83 ~Ev~~Lm~l~~~~~~~~~~~~ 103 (105)
+++|.|++-|...+....+++
T Consensus 3 ~~~D~lLDeId~vLe~NAe~F 23 (33)
T TIGR03687 3 EGVDDLLDEIDGVLESNAEEF 23 (33)
T ss_pred chHHHHHHHHHHHHHHhHHHH
Confidence 467777777777777766554
No 251
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=24.85 E-value=1.8e+02 Score=19.78 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHH
Q 045812 56 SLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMK 90 (105)
Q Consensus 56 ~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~ 90 (105)
.+..+++.|.+.+++.|.+=+++|-+. +++..+|.
T Consensus 91 ~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~ 129 (133)
T cd03330 91 ATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMV 129 (133)
T ss_pred HHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHH
Confidence 355677778889999999999999886 77776664
No 252
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=24.85 E-value=2.6e+02 Score=19.82 Aligned_cols=39 Identities=8% Similarity=0.039 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeeccCCH--HHHHHHHHHHH
Q 045812 55 RSLRELVELCCRWGVKVLTVFAFSYDNW--VEVEFLMKLFE 93 (105)
Q Consensus 55 ~~l~~v~~~c~~~GI~~vT~yafSteN~--~Ev~~Lm~l~~ 93 (105)
+++.+.++++.+.|++..-...+...|. +|+..+.+.+.
T Consensus 140 ~~~~~~i~~l~~~gi~~~i~~~v~~~~~~~~ei~~~~~~l~ 180 (191)
T TIGR02495 140 NNILKSLEILLRSGIPFELRTTVHRGFLDEEDLAEIATRIK 180 (191)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4788889999999998665566666666 68888877765
No 253
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=24.76 E-value=1.3e+02 Score=19.93 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHh-cCCCEEEEEeeccCCH
Q 045812 52 AGVRSLRELVELCCR-WGVKVLTVFAFSYDNW 82 (105)
Q Consensus 52 ~G~~~l~~v~~~c~~-~GI~~vT~yafSteN~ 82 (105)
-|.+.+..++++|.+ +|++.+.+.+. .+|-
T Consensus 92 ~g~~~~~~~~~~a~~~~~~~~i~~~v~-~~N~ 122 (156)
T TIGR03585 92 VGSVLEEAALEYAFEHLGLHKLSLEVL-EFNN 122 (156)
T ss_pred chHHHHHHHHHHHHhhCCeeEEEEEEe-ccCH
Confidence 367778999999885 79999999997 4553
No 254
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=24.63 E-value=76 Score=20.99 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCC---CEEEEEeeccCCH
Q 045812 49 GHEAGVRSLRELVELCCRWGV---KVLTVFAFSYDNW 82 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI---~~vT~yafSteN~ 82 (105)
||+.|.--..-+.-+..+.+. ..+++|+|..--.
T Consensus 70 GHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 70 GHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp EETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred ccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 999998766666666666654 6899999985544
No 255
>TIGR03356 BGL beta-galactosidase.
Probab=24.50 E-value=3.1e+02 Score=22.93 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-EEEEEeeccC
Q 045812 50 HEAGVRSLRELVELCCRWGVK-VLTVFAFSYD 80 (105)
Q Consensus 50 h~~G~~~l~~v~~~c~~~GI~-~vT~yafSte 80 (105)
-.+|++...++++.|.+.||+ .||+|-|..-
T Consensus 89 n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P 120 (427)
T TIGR03356 89 NPKGLDFYDRLVDELLEAGIEPFVTLYHWDLP 120 (427)
T ss_pred CHHHHHHHHHHHHHHHHcCCeeEEeeccCCcc
Confidence 356889999999999999986 7899988643
No 256
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.41 E-value=1.1e+02 Score=18.60 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeeccCC
Q 045812 55 RSLRELVELCCRWGVKVLTVFAFSYDN 81 (105)
Q Consensus 55 ~~l~~v~~~c~~~GI~~vT~yafSteN 81 (105)
+.+.+++....+.|+ .+.++|-.|++
T Consensus 12 ~el~~~l~~~r~~~~-~~~~kAvlT~t 37 (58)
T PF12646_consen 12 EELDKFLDALRKAGI-PIPLKAVLTPT 37 (58)
T ss_pred HHHHHHHHHHHHcCC-CcceEEEECCC
Confidence 357889999999999 89999999887
No 257
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=24.39 E-value=2.2e+02 Score=22.69 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEE
Q 045812 52 AGVRSLRELVELCCRWGVKVLTV 74 (105)
Q Consensus 52 ~G~~~l~~v~~~c~~~GI~~vT~ 74 (105)
...+.+.++++++.++||+.+.+
T Consensus 175 ~n~~ei~~~~~~~~~lGv~~i~i 197 (318)
T TIGR03470 175 TDPEEVAEFFDYLTDLGVDGMTI 197 (318)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE
Confidence 45678999999999999998877
No 258
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=24.34 E-value=1.5e+02 Score=16.98 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 56 SLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 56 ~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
.+.++...+.+.|+.-.+++.++.++.
T Consensus 13 ~l~~i~~~l~~~~~~I~~~~~~~~~~~ 39 (70)
T cd04873 13 LLADITRVLADLGLNIHDARISTTGER 39 (70)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeecCCE
Confidence 467788889999999999999886544
No 259
>PRK07757 acetyltransferase; Provisional
Probab=24.32 E-value=86 Score=21.03 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=26.7
Q ss_pred CchHhHHHHHHHHHHHHHHHHhcCCCEEEEEee
Q 045812 45 PSSAGHEAGVRSLRELVELCCRWGVKVLTVFAF 77 (105)
Q Consensus 45 ~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yaf 77 (105)
|...|+-.|..-+..++++|.+.|+..+-....
T Consensus 75 p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~ 107 (152)
T PRK07757 75 EDYRGQGIGRMLVEACLEEARELGVKRVFALTY 107 (152)
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 445677889999999999999999998765544
No 260
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=24.24 E-value=78 Score=28.00 Aligned_cols=27 Identities=7% Similarity=0.235 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEE
Q 045812 49 GHEAGVRSLRELVELCCRWGVKVLTVF 75 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI~~vT~y 75 (105)
-+..+++|.-+++++|...+|+-|++-
T Consensus 340 l~~~sa~KaArFI~~cd~~~iPlv~L~ 366 (526)
T COG4799 340 LDIDSADKAARFIRLCDAFNIPLVFLV 366 (526)
T ss_pred cchHHHHHHHHHHHhhhccCCCeEEEe
Confidence 467789999999999999999998874
No 261
>PLN02531 GTP cyclohydrolase I
Probab=24.21 E-value=55 Score=28.52 Aligned_cols=10 Identities=20% Similarity=0.208 Sum_probs=8.1
Q ss_pred CeEEEeecCc
Q 045812 26 RHVAVIMDGN 35 (105)
Q Consensus 26 ~HIaiImDGN 35 (105)
-|||+||++.
T Consensus 360 ahVaYiP~~~ 369 (469)
T PLN02531 360 VHVGYFCAEG 369 (469)
T ss_pred EEEEEecCCC
Confidence 5999999744
No 262
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=24.21 E-value=1.1e+02 Score=26.18 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=24.8
Q ss_pred hhHhHHhhhhccCCCCCCCCeEEEeecCc----hHHHHhcCCC
Q 045812 7 NVILARGGVAGGLNREAMPRHVAVIMDGN----VRWARQRGLP 45 (105)
Q Consensus 7 ~~~~~~~~l~~~i~~~~~P~HIaiImDGN----RRwAk~~gl~ 45 (105)
|.+.+++.+ +... ....+|+.+|.|.+ +++|++.|.+
T Consensus 151 ~f~~~~~~l-~~~g-~~~~~~~vaiTd~~~g~L~~~A~~~g~~ 191 (446)
T PRK00973 151 NYLIIRGIL-EKLG-LDPKKHLVFTTDPEKGKLKKIAEKEGYR 191 (446)
T ss_pred HHHHHHHHH-HhcC-ccccceEEEEcCCCccchHHHHHHcCCc
Confidence 455566655 3332 34577999999943 7899988753
No 263
>PF11888 DUF3408: Protein of unknown function (DUF3408); InterPro: IPR021823 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 128 to 160 amino acids in length.
Probab=24.06 E-value=33 Score=24.31 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 58 RELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 58 ~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
..+.+....+|-+.+|+++| .+|.
T Consensus 91 ~~l~~Iv~~ig~~~~si~~y-idNI 114 (136)
T PF11888_consen 91 ERLSRIVRVIGERKMSISGY-IDNI 114 (136)
T ss_pred HHHHHHHHHHCCCCCcHHHH-HHHH
Confidence 44555566689999999999 7775
No 264
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=24.05 E-value=2.1e+02 Score=20.61 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=31.1
Q ss_pred CCeEEEeecCchHHHHhc---CCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccC
Q 045812 25 PRHVAVIMDGNVRWARQR---GLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYD 80 (105)
Q Consensus 25 P~HIaiImDGNRRwAk~~---gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSte 80 (105)
|+++.|++|--.--+... +.++ -....+.+..++..|..+.-..+.+|.|+.+
T Consensus 2 ~~dvv~~ID~SgSM~~~~~~~~~~k---~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~ 57 (199)
T cd01457 2 NRDYTLLIDKSGSMAEADEAKERSR---WEEAQESTRALARKCEEYDSDGITVYLFSGD 57 (199)
T ss_pred CcCEEEEEECCCcCCCCCCCCCchH---HHHHHHHHHHHHHHHHhcCCCCeEEEEecCC
Confidence 678889998552221111 1111 1233455667777777786666888888765
No 265
>CHL00041 rps11 ribosomal protein S11
Probab=23.97 E-value=1.8e+02 Score=20.31 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEe
Q 045812 50 HEAGVRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 50 h~~G~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
..++.....++.+.|.++|++.|.++.
T Consensus 55 ~~Aa~~~a~~~~~~~~~~gi~~v~I~i 81 (116)
T CHL00041 55 PFAAQTAAENAIRTVIDQGMKRAEVMI 81 (116)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEE
Confidence 345555667899999999999999987
No 266
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=23.97 E-value=1.6e+02 Score=22.50 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 045812 51 EAGVRSLRELVELCCRWGVK 70 (105)
Q Consensus 51 ~~G~~~l~~v~~~c~~~GI~ 70 (105)
....+++.+.++.|.+.|.+
T Consensus 106 ~~~~~~~~~~i~~a~~~G~~ 125 (259)
T cd07939 106 AWVLDQLRRLVGRAKDRGLF 125 (259)
T ss_pred HHHHHHHHHHHHHHHHCCCe
Confidence 34566777777788888764
No 267
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=23.87 E-value=84 Score=25.28 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=26.1
Q ss_pred hHhHHHHHHHHHHHHHHHHhcCCCEEEEEee
Q 045812 47 SAGHEAGVRSLRELVELCCRWGVKVLTVFAF 77 (105)
Q Consensus 47 ~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yaf 77 (105)
.+|.--|..-+..++++|.+.|++.+.+++-
T Consensus 37 ~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~ 67 (297)
T cd02169 37 YQGEGLALKIVSELINKAYEEGIFHLFLFTK 67 (297)
T ss_pred HcCCCHHHHHHHHHHHHHHHCCCCEEEEEEc
Confidence 3455668899999999999999999888874
No 268
>TIGR03605 antibiot_sagB SagB-type dehydrogenase domain. SagB of Sterptococcus pyogenes participates in the maturation of streptolysin S from a ribosomally produced precursor polypeptide. Chemically similar systems operate on highly diverse sets of bacteriocin precursors in numerous other bacteria. This model describes a domain within SgaB and homologous regions from other proteins, many of which appear to be involved in biosynthesis of secondary metabolites. While some substrates may be intermediates in non-ribosomal peptide syntheses, others are involved in heterocycle-containing bacteriocin biosynthesis, and can be found near SgaC-like (see TIGR03603, cyclodehydratase) and SgaD-like (see TIGR03604, "docking") proteins. Members of this domain family are heterogeneous in length, as many have a partial second copy of the domain represented here. The incomplete second domain scores below the cutoffs to this model in most cases.
Probab=23.85 E-value=2.8e+02 Score=19.79 Aligned_cols=66 Identities=8% Similarity=-0.026 Sum_probs=41.5
Q ss_pred CCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHH
Q 045812 23 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKL 91 (105)
Q Consensus 23 ~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l 91 (105)
.-|-.|.++.|-+|-+.+.........+....-....+.-.|.++|+...-+-.|.. ++|..++.+
T Consensus 93 ~A~~~iv~~~~~~~~~~~y~~~~~~~~~~daG~~~qnl~LaA~~~Glgs~~i~~f~~---~~v~~~L~l 158 (173)
T TIGR03605 93 TPPIIIFIVARFWKNFWKYGNRGYRLALLDSGIIIQNFYLVATALGLGSCAIGGFDD---DYIAELLGL 158 (173)
T ss_pred cCCEEEEEEEEecccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEccccH---HHHHHHhCc
Confidence 346678888888776665432221223333334566777889999999998887733 455555543
No 269
>PHA01807 hypothetical protein
Probab=23.67 E-value=1.1e+02 Score=22.05 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=29.0
Q ss_pred CchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 45 PSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 45 ~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
|...|.--|..-+..++++|.+.|++.+ .+.-.++|-
T Consensus 91 pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l-~l~v~~~n~ 127 (153)
T PHA01807 91 PEYRNAGVAREFLRELIRLAGEGNLPLI-AFSHREGEG 127 (153)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCCCEE-EEEecCCcH
Confidence 4456888899999999999999999988 444445554
No 270
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=23.61 E-value=2.9e+02 Score=21.68 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeec-cCCHHHHHHHHHHHHH
Q 045812 55 RSLRELVELCCRWGVKVLTVFAFS-YDNWVEVEFLMKLFEK 94 (105)
Q Consensus 55 ~~l~~v~~~c~~~GI~~vT~yafS-teN~~Ev~~Lm~l~~~ 94 (105)
+.-.++++++.++||+..+-+.+- .|.+++.-.++..+.+
T Consensus 145 ~~~l~~i~~a~~~Gi~~~s~~iiG~~Et~ed~~~~l~~lr~ 185 (309)
T TIGR00423 145 DEWLEVIKTAHRLGIPTTATMMFGHVENPEHRVEHLLRIRK 185 (309)
T ss_pred HHHHHHHHHHHHcCCCceeeEEecCCCCHHHHHHHHHHHHh
Confidence 344789999999999999988886 5666655555555543
No 271
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=23.48 E-value=87 Score=23.26 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=26.2
Q ss_pred hHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 36 VRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 36 RRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
.+.|++++.|-..-..........+.+|+.+.+|+.+-|=--.
T Consensus 83 ~~~a~~~~KP~l~i~~~~~~~~~~v~~wl~~~~i~vLNVAGPR 125 (145)
T PF12694_consen 83 VEFARKHGKPCLHIDLSIPEAAAAVAEWLREHNIRVLNVAGPR 125 (145)
T ss_dssp HHHHHHTT--EEEETS-HHHHHHHHHHHHHHTT--EEEEE---
T ss_pred HHHHHHhCCCEEEEecCcccHHHHHHHHHHHCCceEEEeccCc
Confidence 5688888877643333444568899999999999998775544
No 272
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=23.48 E-value=3.7e+02 Score=21.09 Aligned_cols=74 Identities=20% Similarity=0.169 Sum_probs=50.0
Q ss_pred CeEEEeecCch-------HHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec-------cCCH--HHHHHHH
Q 045812 26 RHVAVIMDGNV-------RWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS-------YDNW--VEVEFLM 89 (105)
Q Consensus 26 ~HIaiImDGNR-------RwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS-------teN~--~Ev~~Lm 89 (105)
+-|-+.+.|=| |+-|..|.+. -|...+-|++- +.++|+++.++-.-+ .+.+ +||-..+
T Consensus 148 ~GvY~~~~GP~fET~AEir~~r~~GaD~-----VGMS~vpEvil-Are~g~~~a~is~VtN~a~g~~~~~~th~ev~~~~ 221 (237)
T TIGR01698 148 EGVYAWFPGPHYETPAEIRMAGILGADL-----VGMSTVPETIA-ARFCGLEVLGVSLVTNLAAGITGTPLSHAEVKAAG 221 (237)
T ss_pred CEEEEEecCCCcCCHHHHHHHHHcCCCE-----eccCchHHHHH-HHHCCCcEEEEEEEeccccCCCCCCCCHHHHHHHH
Confidence 44666677754 5555555433 36666777765 899998887765422 2333 8999998
Q ss_pred HHHHHHHHHHHHhhhC
Q 045812 90 KLFEKSIKSELEGFIR 105 (105)
Q Consensus 90 ~l~~~~~~~~~~~~~~ 105 (105)
+.....+.+++.++++
T Consensus 222 ~~~~~~~~~ll~~~i~ 237 (237)
T TIGR01698 222 AAAGTRLAALLADIIK 237 (237)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 8888888888877653
No 273
>KOG1592 consensus Asparaginase [Amino acid transport and metabolism]
Probab=23.34 E-value=88 Score=26.16 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=32.0
Q ss_pred cchhHhHHhhhhccC--CCCCCCCeEEEeecCchHHHHhcCCCchH
Q 045812 5 RNNVILARGGVAGGL--NREAMPRHVAVIMDGNVRWARQRGLPSSA 48 (105)
Q Consensus 5 ~~~~~~~~~~l~~~i--~~~~~P~HIaiImDGNRRwAk~~gl~~~~ 48 (105)
+|-+++-+..+.++. +.+.+| |.=+.=+|-.+||.++|.+...
T Consensus 99 ~nPi~lAr~lm~k~~~~~~griP-p~~Lvg~GAe~~A~~~G~~~v~ 143 (326)
T KOG1592|consen 99 KNPISLARLLMEKQWWGSLGRIP-PCFLVGEGAEKFALAHGVETVP 143 (326)
T ss_pred CCHHHHHHHHHhccccccccCCC-ceEEechHHHHHHHHcCCcccC
Confidence 566667777777654 345667 8888899999999999977653
No 274
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=23.29 E-value=1e+02 Score=23.05 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=25.1
Q ss_pred CCCcchhHhHHhhhhccCCCCCCCCeEEEeecCch
Q 045812 2 SLNRNNVILARGGVAGGLNREAMPRHVAVIMDGNV 36 (105)
Q Consensus 2 ~~~~~~~~~~~~~l~~~i~~~~~P~HIaiImDGNR 36 (105)
|++..|++.+-..+.... .+..|+|.+++.+++-
T Consensus 188 S~~D~~i~~ll~~~~~~~-~~~~~~hy~~~~~~~~ 221 (242)
T cd01406 188 SLTDPNIRYLLERLRKNY-EGKHASHFALLQKPNE 221 (242)
T ss_pred CCCCCcHHHHHHHHHHHh-ccCCCceEEEEeCCCC
Confidence 667777776666666554 4567999999998873
No 275
>PRK07094 biotin synthase; Provisional
Probab=23.24 E-value=2.6e+02 Score=21.79 Aligned_cols=61 Identities=8% Similarity=0.057 Sum_probs=42.7
Q ss_pred HHHHhcCCCchH----hH-HHHHHHHHHHHHHHHhcCCCEEEEEeeccCC----H-------HHHHHHHHHHHHHHH
Q 045812 37 RWARQRGLPSSA----GH-EAGVRSLRELVELCCRWGVKVLTVFAFSYDN----W-------VEVEFLMKLFEKSIK 97 (105)
Q Consensus 37 RwAk~~gl~~~~----Gh-~~G~~~l~~v~~~c~~~GI~~vT~yafSteN----~-------~Ev~~Lm~l~~~~~~ 97 (105)
+++++.|++..- |+ ....+.+.+.++++.++++..++++.|...- + +|.-.++.+.+..+.
T Consensus 172 ~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp 248 (323)
T PRK07094 172 KDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLP 248 (323)
T ss_pred HHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence 367777875432 44 4456788889999999999999999997311 1 666666666665554
No 276
>PLN00105 malate/L-lactate dehydrogenase; Provisional
Probab=23.22 E-value=1.6e+02 Score=24.10 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=33.6
Q ss_pred EEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEe
Q 045812 29 AVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 29 aiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
....||+ +|+ ||-.+...+...++-+.+.||-.|++.-
T Consensus 65 ~a~vDg~------~g~----G~~~~~~am~~aiekAr~~Gi~~v~vrn 102 (330)
T PLN00105 65 SAAVDGN------KNA----GMLVLHHAMDMAIDKAKTHGVGIVGTCN 102 (330)
T ss_pred EEEEECC------CCc----cHHHHHHHHHHHHHHHHHhCEEEEEEeC
Confidence 4468998 567 9999999999999999999999999876
No 277
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=23.03 E-value=2.8e+02 Score=23.63 Aligned_cols=72 Identities=8% Similarity=0.008 Sum_probs=43.3
Q ss_pred hhHhHHhhhhccCCCCCCCCeEEEe-ecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 7 NVILARGGVAGGLNREAMPRHVAVI-MDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 7 ~~~~~~~~l~~~i~~~~~P~HIaiI-mDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
|-+.+...+...+....-..+.+++ .|=. ++.. +....||..|=+.+.++.+.+.+.--+.-.++-++.+-|
T Consensus 242 NR~~f~~~l~~~l~~~~~~~~~~l~~idid-~f~~---in~~~G~~~gD~lL~~va~~l~~~~~~~~~~aRl~gdeF 314 (660)
T PRK11829 242 NRSLFISLLEKEIASSTRTDHFHLLVIGIE-TLQE---VSGAMSEAQHQQLLLTIVQRIEQCIDDSDLLAQLSKTEF 314 (660)
T ss_pred hHHHHHHHHHHHHHhhccCCCEEEEEEECC-cHHH---HHHhhChHHHHHHHHHHHHHHHHhCCCCcEEEEEeCCEE
Confidence 4456666666655432222233333 3333 2332 334569999999999999887765434456777777776
No 278
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=22.57 E-value=77 Score=24.22 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=28.4
Q ss_pred CCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEee
Q 045812 44 LPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAF 77 (105)
Q Consensus 44 l~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yaf 77 (105)
.|..+|+--|..-+..+.+||.+.|++.+.+.+.
T Consensus 192 ~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~ 225 (266)
T TIGR03827 192 LPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIAR 225 (266)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehh
Confidence 3555688889999999999999999998876655
No 279
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=22.46 E-value=1.9e+02 Score=21.36 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEee
Q 045812 49 GHEAGVRSLRELVELCCRWGVKVLTVFAF 77 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI~~vT~yaf 77 (105)
....+.+.++++++.|.++|++.++++.-
T Consensus 78 ~~~~~~~~~~~~i~~a~~lg~~~vv~~~g 106 (274)
T COG1082 78 EREEALEELKRAIELAKELGAKVVVVHPG 106 (274)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEeecc
Confidence 44677888888999999999999987764
No 280
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=22.44 E-value=2.6e+02 Score=21.68 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhc-CCCEEEEEeeccCCH----HHHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRW-GVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 54 ~~~l~~v~~~c~~~-GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~ 98 (105)
.+.+.+.++|+.+. ||.-+.+...+-|-+ +|-..+++...+....
T Consensus 20 ~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~ 69 (288)
T cd00954 20 EDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKG 69 (288)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC
Confidence 34578899999999 999999999888877 8888888877776543
No 281
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.41 E-value=3.8e+02 Score=21.69 Aligned_cols=43 Identities=14% Similarity=0.030 Sum_probs=28.3
Q ss_pred CCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 24 ~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
.+.++|+|+=|+ -+....|.. .-.+.|.++||.. ++|.| .++.
T Consensus 31 ~~p~La~i~vg~--------~~~s~~Yv~------~k~k~a~~~Gi~~-~~~~l-~~~~ 73 (296)
T PRK14188 31 VTPGLAVVLVGE--------DPASQVYVR------SKGKQTKEAGMAS-FEHKL-PADT 73 (296)
T ss_pred CCCeEEEEEeCC--------ChhHHHHHH------HHHHHHHHcCCEE-EEEEC-CCCC
Confidence 344999999998 223334433 3667899999984 46666 3444
No 282
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.38 E-value=3e+02 Score=19.72 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCCEEEEEeeccCCH-HHHHHHHHHH
Q 045812 57 LRELVELCCRWGVKVLTVFAFSYDNW-VEVEFLMKLF 92 (105)
Q Consensus 57 l~~v~~~c~~~GI~~vT~yafSteN~-~Ev~~Lm~l~ 92 (105)
..-+-+.|.++|+....+ .++..+- .+++.+-+++
T Consensus 17 ~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i 52 (257)
T PF13407_consen 17 IKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAI 52 (257)
T ss_dssp HHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHH
Confidence 334566788888887776 3333333 5554444443
No 283
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.33 E-value=2e+02 Score=19.16 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=27.6
Q ss_pred CCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEee
Q 045812 25 PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAF 77 (105)
Q Consensus 25 P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yaf 77 (105)
|.++.|+.++. | ...+.+.+++++|.+.|.+.+++=..
T Consensus 61 ~~~~vi~is~~-------g--------~t~~~~~~~~~~~~~~~~~vi~it~~ 98 (153)
T cd05009 61 EGTPVIFLAPE-------D--------RLEEKLESLIKEVKARGAKVIVITDD 98 (153)
T ss_pred CCCcEEEEecC-------C--------hhHHHHHHHHHHHHHcCCEEEEEecC
Confidence 46777777665 2 23455888999999999988887544
No 284
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=22.31 E-value=1.7e+02 Score=20.21 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHHHHHHHH
Q 045812 56 SLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSIK 97 (105)
Q Consensus 56 ~l~~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l~~~~~~ 97 (105)
.+.++.+.|.++|.=+|+-..++. +.++.+++...++|.
T Consensus 56 ~~~~L~~A~~~~GFf~l~nhGi~~---elid~~~~~~~~FF~ 94 (120)
T PLN03176 56 ICNKIVEACEEWGVFQIVDHGVDA---KLVSEMTTLAKEFFA 94 (120)
T ss_pred HHHHHHHHHHHCCEEEEECCCCCH---HHHHHHHHHHHHHHC
Confidence 477899999999966666544443 678888888888776
No 285
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=22.23 E-value=1.7e+02 Score=18.99 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSIK 97 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l~~~~~~ 97 (105)
...+.++.+.|.+.|.=+|+-...+. +.++.++++..++|.
T Consensus 14 ~~~~~~l~~A~~~~GFf~l~nhGi~~---~l~~~~~~~~~~fF~ 54 (116)
T PF14226_consen 14 EEVAEQLRDACEEWGFFYLVNHGIPQ---ELIDRVFAAAREFFA 54 (116)
T ss_dssp HHHHHHHHHHHHHTSEEEEESSSSSH---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCEEEEecccccc---hhhHHHHHHHHHHHH
Confidence 45678899999999976665554433 567888888888774
No 286
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.15 E-value=4.1e+02 Score=22.03 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeec
Q 045812 55 RSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 55 ~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
+.+.+.++++.+++...+.+|.||
T Consensus 312 ed~~~tl~~l~~l~~~~i~~f~~s 335 (437)
T PRK14331 312 EDFEETLDVLKKVEFEQVFSFKYS 335 (437)
T ss_pred HHHHHHHHHHHhcCcceeeeeEec
Confidence 345556777777777777777777
No 287
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=22.14 E-value=2e+02 Score=20.42 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
....+..++.+.+.+++.|.+=++||-.+
T Consensus 103 ~~~~~~~L~~a~~~~~~sIA~P~i~tG~~ 131 (147)
T cd02906 103 AKCYLSCLDLAEKAGLKSIAFCCISTGLF 131 (147)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcccccCC
Confidence 34566677888999999999999999998
No 288
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=22.07 E-value=1.3e+02 Score=26.08 Aligned_cols=27 Identities=7% Similarity=0.349 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEe
Q 045812 50 HEAGVRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 50 h~~G~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
...|++|+.++++.|.+++++-|++.-
T Consensus 332 ~~~~~~K~~r~i~~a~~~~lPlV~lvD 358 (512)
T TIGR01117 332 DIDSSDKIARFIRFCDAFNIPIVTFVD 358 (512)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 367999999999999999999999854
No 289
>PRK09989 hypothetical protein; Provisional
Probab=22.05 E-value=3.1e+02 Score=20.55 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEee
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAF 77 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yaf 77 (105)
..+.+.+.++.|.++|++.|.++..
T Consensus 83 ~~~~l~~~i~~A~~lg~~~v~v~~g 107 (258)
T PRK09989 83 ARADIDLALEYALALNCEQVHVMAG 107 (258)
T ss_pred HHHHHHHHHHHHHHhCcCEEEECcc
Confidence 3567899999999999999987653
No 290
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=22.04 E-value=2.9e+02 Score=19.66 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=23.5
Q ss_pred eEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 27 HVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 27 HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
=+=||+.-|++|..--|++... ...= ...|-..|.+.|+ .++-||
T Consensus 52 ~lfVi~PvNg~wydytG~~~~~-r~~~---y~kI~~~~~~~gf---~v~D~s 96 (130)
T PF04914_consen 52 VLFVIQPVNGKWYDYTGLSKEM-RQEY---YKKIKYQLKSQGF---NVADFS 96 (130)
T ss_dssp EEEEE----HHHHHHTT--HHH-HHHH---HHHHHHHHHTTT-----EEE-T
T ss_pred eEEEecCCcHHHHHHhCCCHHH-HHHH---HHHHHHHHHHCCC---EEEecc
Confidence 3668899999999999997653 2222 3345556788998 445555
No 291
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=22.01 E-value=2e+02 Score=20.34 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEee
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAF 77 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yaf 77 (105)
.-...+++.+-|.++||+.|.++.=
T Consensus 48 Aq~aa~~~~~~~~~~Gi~~v~v~ik 72 (114)
T TIGR03628 48 AMQAAGRAAEKAKERGITGLHIKVR 72 (114)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEEE
Confidence 3345678999999999999999873
No 292
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.00 E-value=1e+02 Score=24.60 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=28.6
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 48 AGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 48 ~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
.||+.|.....|++.-..+.|..-..+|+-+
T Consensus 79 fGHSmGa~lAfEvArrl~~~g~~p~~lfisg 109 (244)
T COG3208 79 FGHSMGAMLAFEVARRLERAGLPPRALFISG 109 (244)
T ss_pred cccchhHHHHHHHHHHHHHcCCCcceEEEec
Confidence 4999999999999999999999988888876
No 293
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=21.98 E-value=1.1e+02 Score=19.01 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=16.5
Q ss_pred hHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCC
Q 045812 36 VRWARQRGLPSSAGHEAGVRSLRELVELCCRWGV 69 (105)
Q Consensus 36 RRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI 69 (105)
++|.++++++. .++++|..+.|-
T Consensus 22 ~~fl~~~~~~~-----------~~vl~~l~~nGg 44 (53)
T PF10905_consen 22 RQFLRQRQLDW-----------EDVLEWLRENGG 44 (53)
T ss_pred HHHHHHcCCCH-----------HHHHHHHHHcCC
Confidence 56667777743 678899888873
No 294
>PRK05434 phosphoglyceromutase; Provisional
Probab=21.90 E-value=2e+02 Score=25.13 Aligned_cols=38 Identities=37% Similarity=0.512 Sum_probs=28.5
Q ss_pred e-EEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Q 045812 27 H-VAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 27 H-IaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
| +|++.||+ .... .+.+..++++|.+.||+.|-+.+|.
T Consensus 113 Hl~GL~Sdgg--------VHsh------~~hl~~l~~~a~~~g~~~v~vH~~~ 151 (507)
T PRK05434 113 HLMGLLSDGG--------VHSH------IDHLFALLELAKEEGVKKVYVHAFL 151 (507)
T ss_pred EEEEeccCCC--------cccH------HHHHHHHHHHHHHcCCCEEEEEEec
Confidence 5 89999997 3222 3456668888888888888888885
No 295
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=21.85 E-value=98 Score=20.42 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
-+...++.++|...+|+. .|.||.+.+
T Consensus 36 ~~~~k~i~~~c~~~~Vpv--~~~~t~~eL 62 (82)
T PRK13601 36 EHVTKKIKELCEEKSIKI--VYIDTMKEL 62 (82)
T ss_pred HHHHHHHHHHHHhCCCCE--EEeCCHHHH
Confidence 356788999999999999 477776543
No 296
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=21.77 E-value=2.8e+02 Score=21.97 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeec-cCCHHHHHHHHHHHHH
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFS-YDNWVEVEFLMKLFEK 94 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafS-teN~~Ev~~Lm~l~~~ 94 (105)
..+...+.++.+.+.||+..+-+.+- .|+++++..++..+.+
T Consensus 179 s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~ 221 (340)
T TIGR03699 179 SSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLERIRE 221 (340)
T ss_pred CHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHHHHHH
Confidence 35556889999999999977766665 7888666666665554
No 297
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=21.62 E-value=1.6e+02 Score=22.83 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 045812 52 AGVRSLRELVELCCRWGVK 70 (105)
Q Consensus 52 ~G~~~l~~v~~~c~~~GI~ 70 (105)
.-.+.+.+.++.+.+.|.+
T Consensus 116 ~~~~~~~~~i~~ak~~G~~ 134 (273)
T cd07941 116 ENLAMIRDSVAYLKSHGRE 134 (273)
T ss_pred HHHHHHHHHHHHHHHcCCe
Confidence 3456677777777777764
No 298
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=21.46 E-value=1.7e+02 Score=23.11 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~ 98 (105)
.+.+.+.++|+.+.||.-+.+..-+-|-+ +|-..+++...+....
T Consensus 27 ~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~ 75 (303)
T PRK03620 27 EAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAG 75 (303)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC
Confidence 34678899999999999999999888877 8888888877665543
No 299
>cd04514 Taspase1_like Taspase1_like domains; Taspase1 catalyzes the cleavage of the mix lineage leukemia (MLL) nuclear protein and transcription factor TFIIA. Taspase1 is a threonine aspartase, a member of the Ntn hydrolase superfamily and the type 2 asparaginase family. A threonine residue acts as the active site nucleophile in both endopeptidease and protease activities to cleave polypeptide substrates after an aspartate residue. The Taspase1 proenzyme undergoes autoproteolysis into alpha and beta subunits. The N-terminal residue of the beta subunit is a threonine which is the active catalytic residue. The active enzyme is a heterotetramer.
Probab=21.39 E-value=1e+02 Score=25.17 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=27.2
Q ss_pred cchhHhHHhhhhccCC----CCCCCCeEEEeecCchHHHHhcCC
Q 045812 5 RNNVILARGGVAGGLN----REAMPRHVAVIMDGNVRWARQRGL 44 (105)
Q Consensus 5 ~~~~~~~~~~l~~~i~----~~~~P~HIaiImDGNRRwAk~~gl 44 (105)
+|-+++-+..+.+.-. .+.. .|+-++-+|.++||+.+|+
T Consensus 96 knPI~lAr~vme~~~~~~~~~g~~-~h~~LvG~gA~~fA~~~G~ 138 (303)
T cd04514 96 KNPISLARRLLEEQSKGPLSLGRI-PPDFLVGEGARQWAKSHGI 138 (303)
T ss_pred CCHHHHHHHHHHhCcccccccCCC-CceEEEcHHHHHHHHHhCC
Confidence 4556666666655421 1122 4999999999999999998
No 300
>PRK05309 30S ribosomal protein S11; Validated
Probab=21.36 E-value=2.3e+02 Score=20.19 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEe
Q 045812 50 HEAGVRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 50 h~~G~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
..++......+.+.|.++|++.|.++.
T Consensus 59 ~~Aa~~aa~~~~~~~~~~gi~~v~v~i 85 (128)
T PRK05309 59 PYAAQVAAEDAAKKAKEHGMKTVEVFV 85 (128)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEE
Confidence 345555677888999999999999987
No 301
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.29 E-value=2.1e+02 Score=22.01 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=26.5
Q ss_pred hHhHHHHHHHHHHHHHHHHhcCCCEEEEEe
Q 045812 47 SAGHEAGVRSLRELVELCCRWGVKVLTVFA 76 (105)
Q Consensus 47 ~~Gh~~G~~~l~~v~~~c~~~GI~~vT~ya 76 (105)
.+-.++..+.+.+.++.|.++|++.|++-.
T Consensus 80 ~~~r~~sv~~~~~~i~~A~~lga~~vv~H~ 109 (274)
T TIGR00587 80 EEKEEKSLDVLDEELKRCELLGIMLYNFHP 109 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 456778899999999999999999999866
No 302
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=21.28 E-value=1.4e+02 Score=25.44 Aligned_cols=50 Identities=26% Similarity=0.400 Sum_probs=36.4
Q ss_pred CCeEEEeecCchHHHHhc-------C-CCchHhHHHH-HHHHHHHHHHHHhcCCCEEEE
Q 045812 25 PRHVAVIMDGNVRWARQR-------G-LPSSAGHEAG-VRSLRELVELCCRWGVKVLTV 74 (105)
Q Consensus 25 P~HIaiImDGNRRwAk~~-------g-l~~~~Gh~~G-~~~l~~v~~~c~~~GI~~vT~ 74 (105)
=+||-++||---|||++. | .|...||..- +..+.++++-+-..|-..||.
T Consensus 252 G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~ 310 (440)
T TIGR01026 252 GKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITA 310 (440)
T ss_pred CCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeE
Confidence 369999999999999976 4 4667788754 456777777766555445554
No 303
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=21.19 E-value=28 Score=24.93 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeecc
Q 045812 52 AGVRSLRELVELCCRWGVKVLTVFAFSY 79 (105)
Q Consensus 52 ~G~~~l~~v~~~c~~~GI~~vT~yafSt 79 (105)
.-++.+..+++++.+.|.+.++|+.-+.
T Consensus 22 f~~~~i~~~v~~~~~rG~~~v~v~~~~~ 49 (155)
T PF11977_consen 22 FSVRGIQIAVEYFKSRGHEVVVVFPPNY 49 (155)
T ss_dssp EEHHHHHHHHHHHHHTT---EEEEEEGG
T ss_pred cCHHHHHHHHHHHHHcCCCeEEEEcchh
Confidence 3567889999999999999999988665
No 304
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=21.00 E-value=74 Score=26.52 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeeccC
Q 045812 50 HEAGVRSLRELVELCCRWGVKVLTVFAFSYD 80 (105)
Q Consensus 50 h~~G~~~l~~v~~~c~~~GI~~vT~yafSte 80 (105)
++.+.+.+.+.++-+.++||+.|-+|.-+.+
T Consensus 46 ~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~ 76 (320)
T cd04824 46 NRYGVNRLEEFLRPLVAKGLRSVILFGVPLK 76 (320)
T ss_pred eeeCHHHHHHHHHHHHHCCCCEEEEeCCCcc
Confidence 4567889999999999999999999998533
No 305
>PLN02825 amino-acid N-acetyltransferase
Probab=20.98 E-value=81 Score=27.55 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=30.5
Q ss_pred hHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812 47 SAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82 (105)
Q Consensus 47 ~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~ 82 (105)
.+|.-.|..-+..+.++|.+.|++.+.+..-.+.+|
T Consensus 444 yRGkGiG~~LL~~le~~Ar~~G~~~L~Lltt~a~~f 479 (515)
T PLN02825 444 CRGQGQGDKLLDYIEKKAASLGLEKLFLLTTRTADW 479 (515)
T ss_pred HcCCCHHHHHHHHHHHHHHHCCCCEEEEEeCcHHHH
Confidence 446677888999999999999999999988766666
No 306
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=20.90 E-value=2.1e+02 Score=20.26 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=9.1
Q ss_pred CeEEEeecCch
Q 045812 26 RHVAVIMDGNV 36 (105)
Q Consensus 26 ~HIaiImDGNR 36 (105)
++|=+|.||.-
T Consensus 105 ~~villTDG~~ 115 (185)
T cd01474 105 SVIIALTDGQL 115 (185)
T ss_pred eEEEEEcCCCc
Confidence 77889999973
No 307
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=20.87 E-value=1e+02 Score=21.71 Aligned_cols=41 Identities=7% Similarity=0.001 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeeccCCH--HHHHHHHHHHH
Q 045812 52 AGVRSLRELVELCCRWGVKVLTVFAFSYDNW--VEVEFLMKLFE 93 (105)
Q Consensus 52 ~G~~~l~~v~~~c~~~GI~~vT~yafSteN~--~Ev~~Lm~l~~ 93 (105)
.++.+-+...+|..+.||+ .++.-+..+-. +|+..+++.+.
T Consensus 8 ~~C~~crkA~~~L~~~~i~-~~~~d~~~~~~s~~eL~~~l~~~~ 50 (132)
T PRK13344 8 SSCTSCKKAKTWLNAHQLS-YKEQNLGKEPLTKEEILAILTKTE 50 (132)
T ss_pred CCCHHHHHHHHHHHHcCCC-eEEEECCCCCCCHHHHHHHHHHhC
Confidence 3455667788899999998 44555555555 88888888754
No 308
>PRK06267 hypothetical protein; Provisional
Probab=20.86 E-value=3.5e+02 Score=21.89 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEee-ccCCHHHHHHHHHHHHH
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAF-SYDNWVEVEFLMKLFEK 94 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yaf-SteN~~Ev~~Lm~l~~~ 94 (105)
.+...+.++.+.+.|++..+-+.+ --|+.+++..+++++.+
T Consensus 152 ~ed~~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~ 193 (350)
T PRK06267 152 LDKIKEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEE 193 (350)
T ss_pred HHHHHHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHH
Confidence 566778889999999997766666 36677777777776654
No 309
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=20.82 E-value=3.8e+02 Score=21.60 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH-------------HHHHHHHHHHHHHHHH
Q 045812 49 GHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW-------------VEVEFLMKLFEKSIKS 98 (105)
Q Consensus 49 Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~-------------~Ev~~Lm~l~~~~~~~ 98 (105)
--..-++.+.++++||.+.| |-+|-+|.+=+ +++...++.+.+++++
T Consensus 39 l~~~Nl~~l~~~L~~n~~~~---I~~yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~ 98 (275)
T PF03851_consen 39 LARQNLEDLLRILEYNIAHG---IRFYRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKE 98 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-----EEE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC---CCEEecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 44566778889999999998 55888886432 4666666666666554
No 310
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=20.82 E-value=1.2e+02 Score=24.41 Aligned_cols=27 Identities=4% Similarity=0.188 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeecc
Q 045812 53 GVRSLRELVELCCRWGVKVLTVFAFSY 79 (105)
Q Consensus 53 G~~~l~~v~~~c~~~GI~~vT~yafSt 79 (105)
..+.+.+.++++.++|+..+++|.+..
T Consensus 165 t~~~~~~~l~~~~~l~~~~i~~y~l~~ 191 (377)
T PRK08599 165 TIEDFKESLAKALALDIPHYSAYSLIL 191 (377)
T ss_pred CHHHHHHHHHHHHccCCCEEeeeceee
Confidence 456788899999999999999998764
No 311
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.78 E-value=4.8e+02 Score=21.75 Aligned_cols=27 Identities=19% Similarity=0.205 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccC
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYD 80 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSte 80 (105)
-+.+.+.++++.++++..+.+|.||..
T Consensus 321 ~edf~~tl~~l~~~~~~~~~~~~~sp~ 347 (448)
T PRK14333 321 EAQFENTLKLVEEIGFDQLNTAAYSPR 347 (448)
T ss_pred HHHHHHHHHHHHHcCCCEEeeeeeecC
Confidence 345667789999999999999999943
No 312
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.76 E-value=5e+02 Score=21.79 Aligned_cols=23 Identities=4% Similarity=0.202 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCCEEEEEeec
Q 045812 56 SLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 56 ~l~~v~~~c~~~GI~~vT~yafS 78 (105)
.+.+.++++.+++...+++|.||
T Consensus 326 df~~Tl~~i~~l~~~~~~~~~~s 348 (455)
T PRK14335 326 DFEQTLDLMREVEFDSAFMYHYN 348 (455)
T ss_pred HHHHHHHHHHhcCCCeEEEEEec
Confidence 34555666666666666666666
No 313
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=20.70 E-value=2.3e+02 Score=23.74 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCC
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSYDN 81 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSteN 81 (105)
.+.+.+-++.+.++|+.+||+|.++.+.
T Consensus 213 ~e~~~~~l~~~~~l~p~~is~y~L~~~~ 240 (433)
T PRK08629 213 DEVLQHDLDIAKRLDPRQITTYPLMKSH 240 (433)
T ss_pred HHHHHHHHHHHHhCCCCEEEEccceecc
Confidence 5567888999999999999999998544
No 314
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=20.58 E-value=52 Score=20.01 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=13.0
Q ss_pred eeccCCHHHHHHHHHHHH
Q 045812 76 AFSYDNWVEVEFLMKLFE 93 (105)
Q Consensus 76 afSteN~~Ev~~Lm~l~~ 93 (105)
|--.+||.+||.|+.-+.
T Consensus 31 A~~~~Nf~~lD~li~~l~ 48 (49)
T PF07535_consen 31 AENDSNFKELDSLISQLQ 48 (49)
T ss_pred HcCcccHHHHHHHHHHhc
Confidence 344788899998887553
No 315
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=20.57 E-value=3.2e+02 Score=19.40 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=28.6
Q ss_pred CCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhc-------CCCEEEEEeeccCC
Q 045812 24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRW-------GVKVLTVFAFSYDN 81 (105)
Q Consensus 24 ~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~-------GI~~vT~yafSteN 81 (105)
+|-.|.|++|+-+.-.. ......-+.++++++-.... +--.+.+..||++-
T Consensus 1 c~~dvv~vlD~S~Sm~~-------~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~ 58 (186)
T cd01480 1 GPVDITFVLDSSESVGL-------QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQ 58 (186)
T ss_pred CCeeEEEEEeCCCccch-------hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCc
Confidence 58899999999844321 12222223344444443221 12478899998653
No 316
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=20.56 E-value=2.3e+02 Score=21.92 Aligned_cols=46 Identities=20% Similarity=0.363 Sum_probs=29.5
Q ss_pred eEEEeecCchHHHHhcCCCchHhHHHHH--HHHHHHHHHHHhcCC-CEEEEEeeccC
Q 045812 27 HVAVIMDGNVRWARQRGLPSSAGHEAGV--RSLRELVELCCRWGV-KVLTVFAFSYD 80 (105)
Q Consensus 27 HIaiImDGNRRwAk~~gl~~~~Gh~~G~--~~l~~v~~~c~~~GI-~~vT~yafSte 80 (105)
-|++|+|-. | |=..-|+.|. +.+++++-.+..+-= ..+++|.||++
T Consensus 3 rV~LVLD~S-------G-SM~~~yk~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~ 51 (200)
T PF10138_consen 3 RVYLVLDIS-------G-SMRPLYKDGTVQRVVERILALAAQFDDDGEIDVWFFSTE 51 (200)
T ss_pred EEEEEEeCC-------C-CCchhhhCccHHHHHHHHHHHHhhcCCCCceEEEEeCCC
Confidence 478888876 3 1123556662 345667777777743 35999999964
No 317
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=20.54 E-value=1.8e+02 Score=22.11 Aligned_cols=26 Identities=19% Similarity=0.089 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeccCC
Q 045812 56 SLRELVELCCRWGVKVLTVFAFSYDN 81 (105)
Q Consensus 56 ~l~~v~~~c~~~GI~~vT~yafSteN 81 (105)
...++++.+.+.|++.+.++=||.++
T Consensus 246 t~~~a~~~~~~~~~k~lvltH~s~~~ 271 (299)
T TIGR02651 246 TAAQAAEIAKEANVKRLILTHISPRY 271 (299)
T ss_pred CHHHHHHHHHHcCCCEEEEEeccccc
Confidence 46889999999999999999999764
No 318
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=20.47 E-value=3.2e+02 Score=19.32 Aligned_cols=55 Identities=25% Similarity=0.196 Sum_probs=36.7
Q ss_pred CeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHHHHHH
Q 045812 26 RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKS 95 (105)
Q Consensus 26 ~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l~~~~ 95 (105)
..+||+--|||.|...-.. - .=..+.+++|+.+.-|-+|-.. ++++.+.+.+.+.
T Consensus 74 ~~~gV~gsGnr~~g~~f~~--------a------~~~i~~~~~vp~l~k~El~gt~-~Dv~~~~~~~~~~ 128 (134)
T PRK03600 74 LLRGVIASGNRNFGDAFAL--------A------GDVISAKCQVPLLYRFELSGTN-EDVENVRKGVEEF 128 (134)
T ss_pred cEEEEEEecCchHHHHHHH--------H------HHHHHHHhCCCeEEEEecCCCH-HHHHHHHHHHHHH
Confidence 4799999999999753221 1 1122455789999999998776 4555555555444
No 319
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=20.44 E-value=4.5e+02 Score=21.43 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeecc
Q 045812 54 VRSLRELVELCCRWGVKVLTVFAFSY 79 (105)
Q Consensus 54 ~~~l~~v~~~c~~~GI~~vT~yafSt 79 (105)
-+.+.+.++++.++++..+.+|.||.
T Consensus 304 ~ed~~~tl~~i~~~~~~~~~~~~~sp 329 (414)
T TIGR01579 304 EEDFQETLRMVKEIEFSHLHIFPYSA 329 (414)
T ss_pred HHHHHHHHHHHHhCCCCEEEeeecCC
Confidence 44566677888888888888888873
No 320
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=20.43 E-value=1.8e+02 Score=18.23 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=11.7
Q ss_pred HHHHHHhcCCCEEEEEe
Q 045812 60 LVELCCRWGVKVLTVFA 76 (105)
Q Consensus 60 v~~~c~~~GI~~vT~ya 76 (105)
.+.++..+|.+.|.++.
T Consensus 72 ~~~~l~~~G~~~v~~l~ 88 (96)
T cd01529 72 AAQELLALGGKPVALLD 88 (96)
T ss_pred HHHHHHHcCCCCEEEeC
Confidence 45567778988776653
No 321
>PRK10602 murein peptide amidase A; Provisional
Probab=20.35 E-value=2e+02 Score=22.46 Aligned_cols=39 Identities=8% Similarity=0.049 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCEEEEEeeccCCH--HHHHHHHHHHHHHHHHH
Q 045812 59 ELVELCCRWGVKVLTVFAFSYDNW--VEVEFLMKLFEKSIKSE 99 (105)
Q Consensus 59 ~v~~~c~~~GI~~vT~yafSteN~--~Ev~~Lm~l~~~~~~~~ 99 (105)
.+-+||.+.||+.+|+= |.- .| +||+...+-+...++..
T Consensus 194 s~~~~a~~~giP~it~E-l~~-~~~~~~v~~~~~~~~~~l~~~ 234 (237)
T PRK10602 194 SFGSWCADLNLHCITAE-LPP-ISADEASEKYLFAMANLLRWH 234 (237)
T ss_pred cHHHHHHHcCCcEEEEe-cCC-cCcHHHHHHHHHHHHHHHhcc
Confidence 35689999999996654 433 55 88988888887777643
No 322
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=20.26 E-value=94 Score=26.72 Aligned_cols=23 Identities=13% Similarity=0.430 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCCEEEEEeec
Q 045812 56 SLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 56 ~l~~v~~~c~~~GI~~vT~yafS 78 (105)
--..+++.|.++||+.|++|.--
T Consensus 13 ia~ri~ra~~~lGi~tvav~s~~ 35 (449)
T COG0439 13 IAVRIIRACRELGIETVAVYSEA 35 (449)
T ss_pred hHHHHHHHHHHhCCeEEEEeccc
Confidence 34568899999999999999753
No 323
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=20.15 E-value=3.9e+02 Score=20.17 Aligned_cols=51 Identities=22% Similarity=0.163 Sum_probs=32.1
Q ss_pred CCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEee--ccCCH-HHHHHHHH
Q 045812 25 PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAF--SYDNW-VEVEFLMK 90 (105)
Q Consensus 25 P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yaf--SteN~-~Ev~~Lm~ 90 (105)
.+.|++|-+.+ ..|...+..+.+.+.+.|++.+....| .+.+| .+|..|.+
T Consensus 137 ~~~vail~~~~---------------~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~ 190 (312)
T cd06346 137 YKSVATTYINN---------------DYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAA 190 (312)
T ss_pred CCeEEEEEccC---------------chhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh
Confidence 46677776554 234445566777788899987764444 56677 66666543
No 324
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=20.06 E-value=1.1e+02 Score=27.75 Aligned_cols=25 Identities=8% Similarity=0.247 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCCEEEEEeeccCC
Q 045812 57 LRELVELCCRWGVKVLTVFAFSYDN 81 (105)
Q Consensus 57 l~~v~~~c~~~GI~~vT~yafSteN 81 (105)
.-.|++-|.++||++|.||....-|
T Consensus 14 AcRVIRtar~lGi~tVAVYSdaDa~ 38 (645)
T COG4770 14 ACRVIRTARDLGIRTVAVYSDADAD 38 (645)
T ss_pred hHHHHHHHHHcCCceEEEEecCCCC
Confidence 4578999999999999999987665
No 325
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=20.06 E-value=4.6e+02 Score=21.90 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeec
Q 045812 55 RSLRELVELCCRWGVKVLTVFAFS 78 (105)
Q Consensus 55 ~~l~~v~~~c~~~GI~~vT~yafS 78 (105)
+.+.+.++++.++++..+.+|.||
T Consensus 313 edf~~tl~fi~e~~~d~~~~f~ys 336 (440)
T PRK14862 313 EDFQMLLDFLKEAQLDRVGCFKYS 336 (440)
T ss_pred HHHHHHHHHHHHcCCCeeeeEeec
Confidence 345566666777777777777766
Done!