RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 045812
         (105 letters)



>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Micrococcus luteus [TaxId: 1270]}
          Length = 229

 Score = 92.2 bits (228), Expect = 4e-25
 Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 4/91 (4%)

Query: 19  LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
           +N   +P+H+A+IMDGN RWA+Q+ +P   GH  G++++R++       GVK LT++AFS
Sbjct: 2   INAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFS 61

Query: 79  YDN----WVEVEFLMKLFEKSIKSELEGFIR 105
            +N      EV +LMKL    + + L   I 
Sbjct: 62  TENWSRPKDEVNYLMKLPGDFLNTFLPELIE 92


>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Escherichia coli [TaxId: 562]}
          Length = 228

 Score = 88.3 bits (218), Expect = 1e-23
 Identities = 29/82 (35%), Positives = 47/82 (57%)

Query: 24  MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWV 83
             RHVA+IMDGN RWA+++G   + GH+AG +S+R  V      G++ LT++AFS +NW 
Sbjct: 5   GCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWN 64

Query: 84  EVEFLMKLFEKSIKSELEGFIR 105
                +    +     L+  ++
Sbjct: 65  RPAQEVSALMELFVWALDSEVK 86


>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 168

 Score = 25.3 bits (54), Expect = 1.4
 Identities = 14/66 (21%), Positives = 19/66 (28%)

Query: 32  MDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKL 91
               V       LP   G E    +    +    R+G K L       D    +  +   
Sbjct: 97  DVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDH 156

Query: 92  FEKSIK 97
           F  SIK
Sbjct: 157 FNSSIK 162


>d1wqji1 g.1.1.1 (I:2-63) Insulin-like growth factor {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 62

 Score = 23.9 bits (52), Expect = 2.2
 Identities = 5/22 (22%), Positives = 9/22 (40%)

Query: 45 PSSAGHEAGVRSLRELVELCCR 66
          P+  G  +       +V+ CC 
Sbjct: 27 PTGYGSSSRRAPQTGIVDECCF 48


>g2gac.1 d.153.1.5 (A:,B:) Glycosylasparaginase
          (aspartylglucosaminidase, AGA) {Flavobacterium
          meningosepticum [TaxId: 238]}
          Length = 275

 Score = 24.6 bits (53), Expect = 2.6
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 13/55 (23%)

Query: 12 RGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCR 66
           GG     +R+      A IMD N             G  A +  ++  + +   
Sbjct: 51 YGGR---PDRDGRVTLDACIMDENYN----------IGSVACMEHIKNPISVARA 92


>d2pf5a1 d.169.1.4 (A:1-95) TSG-6, Link module {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 95

 Score = 23.6 bits (51), Expect = 4.3
 Identities = 6/39 (15%), Positives = 13/39 (33%)

Query: 31 IMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGV 69
          +  G V +   +  P+    + G+      +    RW  
Sbjct: 52 MAKGRVGYPIVKPGPNCGFGKTGIIDYGIRLNRSERWDA 90


>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 216

 Score = 23.7 bits (50), Expect = 5.3
 Identities = 10/51 (19%), Positives = 17/51 (33%)

Query: 26 RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFA 76
              VI +GNV     R L +     A        +E     G++ + +  
Sbjct: 40 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVG 90


>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 95

 Score = 22.9 bits (49), Expect = 6.3
 Identities = 5/13 (38%), Positives = 8/13 (61%)

Query: 86 EFLMKLFEKSIKS 98
            LM+LF  + +S
Sbjct: 78 RELMQLFHTACES 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0553    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 400,749
Number of extensions: 16204
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 14
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)